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USGS2020

Gene transcript profiling in desert bighorn sheep

Respiratory disease is a key factor affecting the conservation and recovery of bighorn sheep ( Ovis canadensis ) populations. Innovative, minimally invasive tools such as gene transcription–based diagnostics have the potential to improve our understanding of the broad range of factors that can affect the health of wild sheep. Evaluation of transcript levels for genes representative of multiple internal systems enables measurement of physiological responses of individuals as well as populations to environmental stressors such as pathogens, nutritional deficiency, or contaminants. We developed real‐time polymerase chain reaction assays for 14 genes of interest representing systems including inflammation, cell signaling, detoxification, antiviral, antibacterial, or general stress. Initial results from desert bighorn sheep ( O. c. nelsoni ) sampled from the River, Muddy, and Bare mountains as well as from the Pintwater Range, in southern Nevada, USA, indicated unique transcript profiles associated with each population. This initial study provides the framework from which controlled variable or longitudinal studies can be made, thus augmenting the potential to inform management actions in the future.

Nevada↗

USGS2000

Lead exposure in American black ducks after implementation of non-toxic shot

Lead poisoning from the ingestion of spent shotgun pellets has been recognized as an important disease of North American waterfowl since Bellrose's (1959) research >40 years ago. Nation-wide regulations banning the use of lead shot for waterfowl hunting were established in 1991. We compared the prevalence of lead exposure in American black ducks ( Anas rubripes ) wintering on 2 areas in Tennessee before (1986-88) and after the ban (1997-99) to assess the effect of the ban on lead shot on this species. Prevalence of elevated blood lead in black ducks declined by 44% from before (11.7% prevalence) to after (6.5% prevalence) the implementation of non-toxic shot. The reduction in lead exposure was pronounced in adult black ducks (from 14.3% to 5.3%). However, prevalence in lead exposure remained similar in juvenile black ducks (from 8.2% to 8.3%). Additional evidence from lead ingestion and lead poisoning mortality events also indicates that lead exposure has declined in waterfowl in the Mississippi flyway. We believe that lead ingestion will continue to decline, despite the persistence of lead shot in some wetlands. The impact of reduced lead exposure on waterfowl populations needs to be assessed.

Tennessee↗

USGS2005

Is disease an important mortality factor for Pacific herring?

Marine pelagic forage fishes, including sardines, anchovies, and herring, undergo large oscillations in population abundance. Although over-fishing can have a dramatic impact in reducing population size, this anthropogenic perturbation cannot fully account for all population declines because natural oscillations in marine pelagic fish biomasses occurred prior to the onset of commercial fishing. Among the herring metapopulation in Puget Sound / Straight of Georgia, the mean estimated annual mortality, exclusive of commercial fishing, increased from 20% in the late 1970’s and early 1980’s to 64-87% during 1996-1999. This natural mortality affects primarily the older age cohorts and resulted in recent decreased median ages of adult herring from age 4-6 cohorts to age 2-3 cohorts that die prior to iteroparous spawning. Surveys of wild herring from the region indicate that the protozoan parasite Ichthyophonus sp., is currently ubiquitous among Pacific herring populations in Washington and British Columbia, and prevalence of infection increase directly with herring age, from 12% among juveniles to 58% among the underrepresented age 6+ cohorts. Ichthyophonus can be highly pathogenic to immunologically naïve Pacific herring, causing 80% mortality 2 mo. after exposure in the laboratory. Current laboratory-based studies are underway to determine whether natural Ichthyophonus infections are terminal for the host, and whether these infections account for the decreasing median age of wild Pacific herring populations in recent years.

American Association of Wildlife Veterinarians↗

USGS2021

White-nose Syndrome and environmental correlates to landscape-scale bat presence

Over the past 13 years, White-nose Syndrome (WNS) has caused North American bat population declines and shifted community structure towards species less or unaffected by the disease. Mist-netting, acoustic surveys, and cave count data have been used to document changes in bat presence and activity through site-specific, pre- and post-WNS studies. Management and survey guidance often must be applied at a combined landscape and site-specific scale. Our objective was to explore the relationships among WNS impact, influence of available hibernacula, and environmental factors for the nightly presence of 3 WNS-affected bats: the Indiana bat ( Myotis sodalis ), northern long-eared bat ( M. septentrionalis ), and big brown bat ( Eptesicus fuscus ). We used recordings from 10 acoustic monitoring study areas, each with 3 survey locations across the states of Virginia, West Virginia, Ohio and Kentucky to assess changes in nightly bat presence during the summer of 2017. There were significant positive and negative correlates of broad land-cover categories for presence of all 3 bat species. Our findings also corroborated trends in abundance and distribution patterns found in prior, smaller-scale studies, supporting the relevance of land cover categories in a large-scale acoustic monitoring framework. We observed a negative association between WNS impact-years and nightly northern long-eared bat presence, but low occurrence and patchy distribution reduced our ability to infer strong relationships. Big brown bat presence showed a significant positive relationship with WNS occurrence on the landscape, providing evidence that big brown bats are maintaining populations after years of exposure. Indiana bats were the least-documented species, limiting the strength of our conclusions, but we did observe significant temporal patterns in nightly presence, with higher probabilities of presence earlier in the summer. Our results show the potential efficacy of using a WNS impact metric to predict summer bat presence, inform current U.S. Fish and Wildlife Service acoustic monitoring guidelines, and highlight which environmental variables are relevant for large-scale acoustic monitoring.

Wildlife Society Bulletin↗

USGS2023

Survival, cause-specific mortality, and population growth of white-tailed deer in western Virginia

Understanding the role of recruitment in population dynamics of white-tailed deer ( Odocoileus virginianus ) is important for management. In the central Appalachian Mountains, deer are part of a largely forested ecosystem that supports 3 carnivore species thought to be capable of influencing white-tailed deer recruitment: black bears ( Urus americanus ), coyotes ( Canis latrans ), and bobcats ( Lynx rufus ). Yet little is known about predation, how other environmental factors influence recruitment, or the importance of neonate survival to white-tailed deer population performance in the region. Our objectives were to identify causes of mortality for neonates, analyze effects of landscape attributes on survival of neonates, estimate survival rates for neonates and adult female white-tailed deer, and to model population growth trends based on current vital rates and hypothetical harvest and neonate survival scenarios. During 2019–2020, we captured 57 neonate deer in Bath County, Virginia, USA, by monitoring 38 pregnant females equipped with global positioning system collars and vaginal implant transmitters and by conducting transect searches for recently born neonates. We observed 37 neonate mortalities and identified cause of death using field and genetic evidence. Mortalities included 28 predation events and 9 deaths from other causes (e.g., abandonment, malnutrition, disease). Black bears accounted for 48.6% of neonate mortalities, and 64.2% of predation events ( n = 18), followed by bobcats ( n = 5) and coyotes ( n = 3). Annual survival for adult female deer was 0.871 and neonate survival to 12 weeks old was 0.310. Elevation was a significant predictor of neonate survival; mortality risk increased 20% for every 100-m increase in elevation. Models of annual population growth using observed vital rates predicted an increasing population (λ = 1.10). A 10% increase in female harvest would still result in a potential population increase of 2% (λ = 1.02), but a 20% increase in harvest rate would result in a potential 7% decline (λ = 0.93). Neonate survival was higher near fertile valley bottoms and lower along forested ridges characterized by shallow, infertile soils and limited edge or early successional forests. While predation, largely influenced by black bears, was the leading cause of neonate mortality and contributed to low neonate survival, we observed little evidence of population decline, and suggest there is opportunity for a modest increase in harvest of female deer.

Virginia↗

USGS2026

Diverse novel and avian-associated viruses in the ileal viromes of northern mockingbird (Mimus polyglottos)

Viruses are the most abundant and diverse organisms on Earth, though only a small portion cause disease. Understanding viral diversity is key to understanding and predicting pathogen emergence and zoonotic spillover. Here, we use meta-transcriptomic sequencing to examine the viral communities in the ileum of 25 Northern Mockingbirds ( Mimus polyglottos ) from various locations across Texas. We assembled high-quality genomes of 43 viral species (40 species identified to 13 families, one to kingdom, and two to realm), 38 of which were novel. They tentatively represent avian- (n = 3), arthropod- (n = 21), plant- (n = 5) and fungi- (n = 4) associated, or other (n = 10) viruses. The arthropod-associated Dicistroviridae family was the most dominant, comprising known and potentially new species. Of potential epidemiological importance were three novel and avian-associated viruses: members of the families Hepeviridae and Picornaviridae , and a new Matryoshka RNA virus. The Matryoshka RNA virus 8 (MaRNAV-8) is sister to other Matryoshka RNA viruses, and its co-occurrence with haemosporida further supports the nested virus-parasite-vector-vertebrate host relationship of this group of viruses, with potential implications for parasite evolution, fitness and load and vector competence. The Picornaviridae virus is a member of an avian hepatovirus clade, found nested within a clade containing both the mammalian pathogens Hepatovirus A – I and the avian Tremovirus pathogens, suggestive of a newly discovered pathogen of Northern Mockingbird. Although the recovered Hepeviridae virus is of unknown pathology, its family members include the Hepatitis E viruses. With the great diversity and novelty described from ileal viromes, discriminating potential pathogens and commensal microbiota from viruses associated with food items remains challenging. A deeper understanding of virus transmission and the risk of potential zoonosis can be enhanced by tracking viruses through the food web and via inter-specific and predator-prey interactions, particular in areas subject to land-use change, where human-wildlife interactions are increased and the risks from emerging pathogens of veterinary and medical importance are more pronounced.

Texas↗

USGS2006

Wetland environmental conditions associated with the risk of avian cholera outbreaks and the abundance of Pasteurella multocida

Avian cholera is a significant infectious disease affecting waterfowl across North America and occurs worldwide among various avian species. Despite the importance of this disease, little is known about the factors that cause avian cholera outbreaks and what management strategies might be used to reduce disease mortality. Previous studies indicated that wetland water conditions may affect survival and transmission of Pasteurella multocida, the agent that causes avian cholera. These studies hypothesized that water conditions affect the likelihood that avian cholera outbreaks will occur in specific wetlands. To test these predictions, we collected data from avian cholera outbreak and non-outbreak (control) wetlands throughout North America (wintera??spring 1995a??1996 to 1998a??1999) to evaluate whether water conditions were associated with outbreaks. Conditional logistic regression analysis on paired outbreak and non-outbreak wetlands indicated no significant association between water conditions and the risk of avian cholera outbreaks. For wetlands where avian cholera outbreaks occurred, linear regression showed that increased eutrophic nutrient concentrations (Potassium [K], nitrate [NO3], phosphorus [P], and phosphate [PO3]) were positively related to the abundance of P. multocida recovered from water and sediment samples. Wetland protein concentration and an El Ni??o event were also associated with P. multocida abundance. Our results indicate that wetland water conditions are not strongly associated with the risk of avian cholera outbreaks; however, some variables may play a role in the abundance of P. multocida bacteria and might be important in reducing the severity of avian cholera outbreaks.

Journal of Wildlife Management↗

USGS2001

Conservation status and recovery strategies for endemic Hawaiian birds

Populations of endemic Hawaiian birds declined catastrophically following the colonization of the islands by Polynesians and later cultures. Extinction is still occurring, and recovery programs are urgently needed to prevent the disappearance of many other species. Programs to recover the endemic avifauna incorporate a variety of conceptual and practical approaches that are constrained by biological, financial, social, and legal factors. Avian recovery is difficult to implement in Hawai‘i because a variety of challenging biological factors limit bird populations. Hawaiian birds are threatened by alien predatory mammals, introduced mosquitoes that transmit diseases, alien invertebrate parasites and predators that reduce invertebrate food resources, and alien animals and plants that destroy and alter habitats. Life in the remote Hawaiian Archipelago has imposed other biological constraints to avian recovery, including limited geographical distributions and small population sizes. Recovery of the endemic avifauna is also challenging because resources are insufficient to mitigate the many complex, interacting factors that limit populations. Decisions must be made for allocating limited resources to species teetering on the brink of extinction and those in decline. If funds are spent primarily on saving the rarest species, more abundant species will decline and become more difficult to recover. However, critically rare species will disappear if efforts are directed mainly towards restoring species that are declining but not in immediate danger of becoming extinct. Determining priorities is difficult also because management is needed both to supplement bird populations and to restore habitats of many species. Rare species cannot respond quickly to management efforts intended only to improve habitat and reduce limiting factors. Recovery is slow, if it occurs at all, because years or decades are generally required for habitat rehabilitation and because small populations of birds initially increase slowly even when habitat conditions are favorable. Consequently, even as habitat conditions begin to improve, small populations may disappear unless they are supplemented directly. Hawaiian bird conservation is also affected by social and legal factors, including hunting alien game species, commercial land use practices, and lawsuits and policies concerning endangered species and critical habitat. Influenced by this mixture of conflicting and competing issues, Hawaiian bird recovery programs range from management of single species and some components of their habitats to limited forms of community or ecosystem management. Although the effectiveness of most programs is difficult to evaluate because of monitoring limitations, several programs exemplify species and community management. Programs primarily intended to recover single species include Hawaiian Goose or Nene ( Branta sandvicensis ), Hawaiian Crow or ‘Alala ( Corvus hawaiiensis ), and Palila ( Loxioides bailleui ). Programs attempting to manage entire communities of forest birds include Hakalau Forest National Wildlife Refuge and Hawai‘i Volcanoes National Park on Hawai‘i, and Waikamoi Preserve, Hanawi Natural Area Reserve, and Haleakala National Park on Maui.

Hawaii↗

USGS2010

Deer carcass decomposition and potential scavenger exposure to chronic wasting disease

Chronic wasting disease (CWD) is a transmissible spongiform encephalopathy afflicting the Cervidae family in North America, causing neurodegeneration and ultimately death. Although there are no reports of natural cross-species transmission of CWD to noncervids, infected deer carcasses pose a potential risk of CWD exposure for other animals. We placed 40 disease-free white-tailed deer (Odocoileus virginianus) carcasses and 10 gut piles in the CWD-affected area of Wisconsin (USA) from September to April in 2003 through 2005. We used photos from remotely operated cameras to characterize scavenger visitation and relative activity. To evaluate factors driving the rate of carcass removal (decomposition), we used KaplanMeier survival analysis and a generalized linear mixed model. We recorded 14 species of scavenging mammals (6 visiting species) and 14 species of scavenging birds (8 visiting species). Prominent scavengers included American crows (Corvus brachyrhynchos), raccoons (Procyon lotor), and Virginia opossums (Didelphis virginiana). We found no evidence that deer consumed conspecific remains, although they visited gut piles more often than carcasses relative to temporal availability in the environment. Domestic dogs, cats, and cows either scavenged or visited carcass sites, which could lead to human exposure to CWD. Deer carcasses persisted for 18 days to 101 days depending on the season and year, whereas gut piles lasted for 3 days. Habitat did not influence carcass decomposition, but mammalian and avian scavenger activity and higher temperatures were positively associated with faster removal. Infected deer carcasses or gut piles can serve as potential sources of CWD prions to a variety of scavengers. In areas where surveillance for CWD exposure is practical, management agencies should consider strategies for testing primary scavengers of deer carcass material.

Journal of Wildlife Management↗

USGS2022

Efficacy of secondary electric fences at preventing direct contact among white-tailed deer

Free-ranging and captive cervid herds are at risk for chronic wasting disease transmission from direct contacts at fences, so we explored the use of a secondary electric fence to prevent contacts in white-tailed deer ( Odocoileus virginianus ). Using a captive herd of white-tailed deer in Pennsylvania, USA, we tested the efficacy of two electric fence designs (one three-strand and one six-strand) constructed along separate primary fence lines (each composed of 20 m of chain link and 20 m of woven wire fencing) dividing paddocks of captive deer. From June to November 2019, we conducted three trials of variable lengths to assess how season, age, and sex impacted behavior and motivation of deer to breach the electric fence. When no electric fence was in place, we observed 117 direct contacts through woven wire and chain link fences. With the electric fences in place, we observed electric fence breaches (which led to direct contact between deer) by weaned fawns (37 breaches, 4 direct contacts) and males in the mid- and late-rut (2 breaches, 1 direct contact). The majority of breaches occurred across the three-strand-fence. Our results suggest that no style of primary fence alone is sufficient to prevent direct contacts and that the addition of a secondary, properly designed electric fence constructed along the primary fence of captive white-tailed deer facilities could prevent direct contact between captive and free-ranging deer.

Pennsylvania↗

USGS2013

Pregnancy rates in central Yellowstone bison

Plains bison ( Bison b. bison ) centered on Yellowstone National Park are chronically infected with brucellosis ( Brucella abortus ) and culled along the park boundaries to reduce the probability of disease transmission to domestic livestock. We evaluated the relationship between pregnancy rates and age, dressed carcass weight, and serological status for brucellosis among bison culled from the central Yellowstone subpopulation during the winters of 1996–1997, 2001–2002, and 2002–2003. A model with only dressed carcass weight was the best predictor of pregnancy status for all ages with the odds of pregnancy increasing by 1.03 (95% CI = 1.02–1.04) for every 1-kg increase in weight. We found no effect of age or the serological status for brucellosis on pregnancy rates across age classes; however, we did find a positive association between age and pregnancy rates for bison ≥2 years old. Bison ≥2 years old had an overall pregnancy rate of 65% with markedly different rates in alternate ages for animals between 3 and 7 years old. Pregnancy rates were 0.50 (95% CI = 0.31–0.69) for brucellosis positive and 0.57 (95% CI = 0.34–0.78) for brucellosis negative 2- and 3-year-olds and 0.74 (95% CI = 0.60–0.85) in brucellosis positive and 0.69 (95% CI = 0.49–0.85) in brucellosis negative bison ≥4 years old. Only 1 of 21 bison <2 years old was pregnant. Our findings are important to accurately predict the effects of brucellosis on Yellowstone bison population dynamics. We review our results relative to other studies of Yellowstone bison that concluded serological status for brucellosis influences pregnancy rates.

Wyoming↗

USGS2022

Assembling a safe and effective toolbox for integrated flea control and plague mitigation: Fipronil experiments with prairie dogs

Background Plague, a widely distributed zoonotic disease of mammalian hosts and flea vectors, poses a significant risk to ecosystems throughout much of Earth. Conservation biologists use insecticides for flea control and plague mitigation. Here, we evaluate the use of an insecticide grain bait, laced with 0.005% fipronil (FIP) by weight, with black-tailed prairie dogs (BTPDs, Cynomys ludovicianus ). We consider safety measures, flea control, BTPD body condition, BTPD survival, efficacy of plague mitigation, and the speed of FIP grain application vs. infusing BTPD burrows with insecticide dusts. We also explore conservation implications for endangered black-footed ferrets ( Mustela nigripes ), which are specialized predators of Cynomys . Principal findings During 5- and 10-day laboratory trials in Colorado, USA, 2016–2017, FIP grain had no detectable acute toxic effect on 20 BTPDs that readily consumed the grain. During field experiments in South Dakota, USA, 2016–2020, FIP grain suppressed fleas on BTPDs for at least 12 months and up to 24 months in many cases; short-term flea control on a few sites was poor for unknown reasons. In an area of South Dakota where plague circulation appeared low or absent, FIP grain had no detectable effect, positive or negative, on BTPD survival. Experimental results suggest FIP grain may have improved BTPD body condition (mass:foot) and reproduction (juveniles:adults). During a 2019 plague epizootic in Colorado, BTPDs on 238 ha habitat were protected by FIP grain, whereas BTPDs were nearly eliminated on non-treated habitat. Applications of FIP grain were 2–4 times faster than dusting BTPD burrows. Significance Deltamethrin dust is the most commonly used insecticide for plague mitigation on Cynomys colonies. Fleas on BTPD colonies exhibit the ability to evolve resistance to deltamethrin after repeated annual treatments. Thus, more tools are needed. Accumulating data show orally-delivered FIP is safe and usually effective for flea control with BTPDs, though potential acute toxic effects cannot be ruled out. With continued study and refinement, FIP might be used in rotation with, or even replace deltamethrin, and serve an important role in Cynomys and black-footed ferret conservation. More broadly, our stepwise approach to research on FIP may function as a template or guide for evaluations of insecticides in the context of wildlife conservation.

South Dakota↗

USGS2013

Seventy-five years of science—The U.S. Geological Survey’s Western Fisheries Research Center

As of January 2010, 75 years have elapsed since Dr. Frederic Fish initiated the pioneering research program that would evolve into today’s Western Fisheries Research Center (WFRC). Fish began his research working alone in the basement of the recently opened Fisheries Biological Laboratory on Lake Union in Seattle, Washington. WFRC’s research began under the aegis of the U.S. Fish and Wildlife Service and ends its first 75 years as part of the U.S. Geological Survey with a staff of more than 150 biologists and support personnel and a heritage of fundamental research that has made important contributions to our understanding of the biology and ecology of the economically important fish and fish populations of the Nation. Although the current staff may rarely stop to think about it, WFRC’s antecedents extend many years into the past and are intimately involved with the history of fisheries conservation in the Western United States. Thus, WFRC Director Lyman Thorsteinson asked me to write the story of this laboratory “while there are still a few of you around who were here for some of the earlier years” to document the rich history and culture of WFRC by recognizing its many famous scientists and their achievements. This historyalso would help document WFRC’s research ‘footprint’ in the Western United States and its strategic directions. Center Director Thorsteinson concluded that WFRC’s heritage told by an emeritus scientist also would add a texture of legitimacy based on personal knowledge that will all-to-soon be lost to the WFRC and to the USGS. The WFRC story is important for the future as well as for historical reasons. It describes how we got to the place we are today by documenting the origin, original mission, and our evolving role in response to the constantly changing technical information requirements of new environmental legislation and organizational decision-making. The WFRC research program owes its existence to the policy requirements of Federal conservation legislation originating with the construction of Grand Coulee Dam in 1933. The research program was shaped by laws enacted in subsequent years such as the Federal Water Pollution Control Act (1972), National Environmental Policy Act (1973), Endangered Species Act (1974), and Northwest Power Planning Act (1980), to name only a few. The WFRC has not been constrained by direct management or regulatory responsibility for a particular fishery (such as providing sustainable catch limits data to a resource management structure). Thus, WFRC has been able to concentrate on scientific pursuits and information needs required by contemporary environmental legislation. Over the years, we have pioneered in several important areas of fisheries research including the diagnoses and control of diseases in economically important fish, effects of environmental alterations on the physiological quality and survival of Pacific salmon released from federal mitigation hatcheries, applications in biotelemetry, and the bioenergetics of predator-prey interactions in the Columbia River. The WFRC of today is a widely distributed organization in the Western United States. Knowledge of the historical connections and accomplishments of our predecessors is important beyond the sense of pride and unity it instills in the WFRC family of today. For example, a discerning reader will note the evolution of WFRC’s research from a single disciplinary focus (early era—hatchery disease problems), to multiple disciplines (middle to late era—species, populations, habitats; threatened and endangered species), to the present era (multidisciplinary and with increasing process focus). For the benefit of the current WFRC staff, more emphasis has been placed on the early years rather than on the present day because people are quite naturally more familiar with the recent past than with the research done during the first decades of WFRC’s existence. By every rational measure, the WFRC has evolved into a fisheries research organization well positioned to provide the biological information needed to support the continued conservation and management of our Nation’s living aquatic natural resources. The high standard of excellence that connects WFRC’s past to our present research program provides a firm foundation on which to base the work yet to be done. In another 75 years, WFRC will undoubtedly be a very different place than it is today, but its evolution will be forever rooted in the story of the research and of the people related here. More about the diverse fisheries research projects WFRC scientists are conducting today is available at WFRC’s website: http://wfrc.usgs.gov/.

Washington↗

USGS2021

Negligible evidence for detrimental effects of Leucocytozoon infections among Emperor Geese (Anser canagicus) breeding on the Yukon-Kuskokwim Delta, Alaska

Emperor Geese ( Anser canagicus ) are iconic waterfowl endemic to Alaska and adjacent areas of northeastern Russia that are considered to be near threatened by the International Union for Conservation. This species has been identified as harboring diverse viruses and parasites which have, at times, been associated with disease in other avian taxa. To better assess if disease represents a vulnerability for Emperor Geese breeding on the Yukon-Kuskokwim Delta, Alaska, we evaluated if haemosporidian parasites were associated with decreased mass or survival among adult female nesting birds captured during 2006–2016. Through molecular analyses, we detected genetically diverse Leucocytozoon , Haemoproteus , and Plasmodium parasites in 28%, 1%, and 1% of 607 blood samples screened in triplicate, respectively. Using regression analysis, we found evidence for a small effect of Leucocytozoon infection on the mass of incubating adult female Emperor Geese. The estimated mass of infected individuals was approximately 43 g (95% CI: 20–67 g), or approximately 2%, less than uninfected birds when captured during the second half of incubation (days 11–25). We did not, however, find support for an effect of Leucocytozoon infection on survival of adult female nesting Emperor Geese using a multi-state hidden Markov framework to analyze mark-resight and recapture data. Using parasite mitochondrial DNA cytochrome b sequences, we identified 23 haplotypes among infected Emperor Geese. Leucocytozoon haplotypes clustered into three phylogenetically supported clades designated as ‘ L. simondi clade A’, ‘ L. simondi clade B’, and ‘other Leucocytozoon ’. We did not find evidence that parasites assigned to any of these clades were associated with differential mass measures among nesting adult female Emperor Geese. Collectively, our results provide negligible evidence for Leucocytozoon parasites as causing detrimental effects to adult female Emperor Geese breeding on the Yukon-Kuskokwim Delta.

Alaska↗

USGS2022

Examining landowners’ preferences for a chronic wasting disease management program

Private landowners are key partners in chronic wasting disease (CWD) management, especially in landscapes where there is limited public ownership. In this study, we evaluated landowners' preferences for alternative hypothetical CWD management programs using a stated choice experiment. We were particularly interested in understanding preferences for the use of financial incentives to motivate white-tailed deer harvest and facilitate hunter access to private lands as potential CWD management tools. We used latent class analysis to characterize preference heterogeneity among landowners stemming from patterns of choice. We compared means and distributions of auxiliary variables related to landowners' perceived risks, trust, attitudes toward management, and sociodemographics across latent classes stemming from choice model results. The pooled model demonstrated that reducing deer population density, providing payments to landowners for CWD-positive deer taken from their property, the form of incentives for public access, and banning recreational deer feeding had a small positive effect on respondents' choice of CWD management program. However, providing financial payments to hunters for harvesting CWD-positive deer and the use of targeted culling had the opposite effect on choice. Latent class models revealed that a majority of respondents exhibited a pattern of preference where all forms of incentives exerted a negative effect on choice, but smaller subsets of landowners positively evaluate the use of some incentives. Post-hoc contrasts revealed relationships between patterns of preferences and trust, risk, and attitudes toward CWD management with small to medium effects. Results demonstrated limited support for the use of financial incentives as a tool to manage access and harvest in the southeast Minnesota CWD management zone

Minnesota↗

USGS2021

Oral sylvatic plague vaccine does not adequately protect prairie dogs (Cynomys spp.) for endangered black-footed ferret (Mustela nigripes) conservation

The plague bacterium Yersinia pestis is lethal to endangered black-footed ferrets ( Mustela nigripes , BFF) and the prairie dogs ( Cynomys spp., PD) on which they depend for habitat and prey. We assessed the effectiveness of an oral sylvatic plague vaccine delivered in baits to black-tailed PD ( Cynomys ludovicianus , BTPD) from 2013 to 2017 on the Charles M. Russell National Wildlife Refuge (CMR) in northcentral Montana. We permanently marked BTPD on four paired vaccine ( N = 1,349 individuals) and placebo plots ( N = 926; 7,027 total captures). We analyzed capture–recapture data under a Cormack–Jolly–Seber model to estimate annual apparent survival. Overall, survival averaged 0.05 lower on vaccine plots than on paired placebo plots. Immediately before noticeable die-offs and detecting plague on pairs CMR1 and CMR2, 89% of BTPD sampled on vaccine plots had consumed at least one bait and the immune systems (pleural) of 40% were likely boosted by consuming baits over multiple years. Survival to the following year was 0.16 and 0.05 on the vaccine plots and 0.19 and 0.06 on the placebo plots for pairs CMR1 and CMR2, respectively. These rates were markedly lower than 0.63, the overall average estimate on those same plots during the previous 3 years. PD populations subjected to such large die-offs would not be expected to sustain a BFF population. An overriding limitation to achieving sufficient protection rests with vaccine delivery constraints. Late summer/fall bait distribution results in the highest bait uptake rates. However, the PD birth pulse each spring can double the size of populations in most years, greatly reducing the proportion of vaccinates in populations and diminishing potential herd immunity benefits. In addition to nonvaccinated juveniles and PD that do not consume bait, incomplete vaccine protection and time required for immunity to develop leaves a large majority of PD populations vulnerable to plague for 6–7 months or more each year.

Montana↗

USGS2008

Elk calf survival and mortality following wolf restoration to Yellowstone National Park

We conducted a 3‐year study (May 2003–Apr 2006) of mortality of northern Yellowstone elk ( Cervus elaphus ) calves to determine the cause for the recruitment decline (i.e., 33 calves to 13 calves/100 adult F) following the restoration of wolves ( Canis lupus ). We captured, fit with radiotransmitters, and evaluated blood characteristics and disease antibody seroprevalence in 151 calves ≤6 days old (68M:83F). Concentrations (x̄, SE) of potential condition indicators were as follows: thyroxine (T4; 13.8 μg/dL, 0.43), serum urea nitrogen (SUN; 17.4 mg/dL, 0.57), γ‐glutamyltransferase (GGT; 66.4 IU/L, 4.36), gamma globulins (GG; 1.5 g/dL, 0.07), and insulin‐like growth factor‐1 (IGF‐1; 253.6 ng/mL, 9.59). Seroprevalences were as follows: brucellosis ( Brucella abortus ; 3%), bovine‐respiratory syncytial virus (3%), bovine‐viral‐diarrhea virus type 1 (25%), infectious‐bovine rhinotracheitis (58%), and bovine parainfluenza‐3 (32%). Serum urea nitrogen, GGT, GG, and IGF‐1 varied with year; T4, SUN, and GG varied with age ( P ≤ 0.01); and SUN varied by capture area ( P = 0.02). Annual survival was 0.22 (SE = 0.035, n = 149) and varied by calving area but not year. Neonates captured in the Stephens Creek/Mammoth area of Yellowstone National Park, USA, had annual survival rates >3× higher (0.54) than those captured in the Lamar Valley area (0.17), likely due to the higher predator density in Lamar Valley. Summer survival (20 weeks after radiotagging) was 0.29 (SE = 0.05, n = 116), and calving area, absolute deviation from median birth date, and GG were important predictors of summer survival. Survival during winter (Nov‐Apr) was 0.90 (SE= 0.05, n = 42), and it did not vary by calving area or year. Sixty‐nine percent ( n = 104) of calves died within the first year of life, 24% ( n = 36) survived their first year, and 7% ( n = 11) had unknown fates. Grizzly bears ( Ursus arctos ) and black bears ( Ursus americanus ) accounted for 58–60% ( n = 60–62) of deaths, and wolves accounted for 14–17% ( n = 15–18). Summer predation (95% of summer deaths) increased, and winter malnutrition (0% of winter deaths) decreased, compared with a similar study during 1987–1990 (72% and 58%, respectively). Physiological factors (e.g., low levels of GG) may predispose calves to predation. Also, the increase in bear numbers since wolf restoration and spatial components finer than the northern range should be considered when trying to determine the causes of the northern Yellowstone elk decline. This is the first study to document the predation impacts from reintroduced wolves on elk calf mortality in an ecosystem already containing established populations of 4 other major predators (i.e., grizzly and black bears, cougars [ Puma concolor ], and coyotes [ Canis latrans ]). The results are relevant to resource managers of the Yellowstone ecosystem in understanding the dynamics of the elk population, in providing harvest quota recommendations for local elk hunts to the Montana Department of Fish, Wildlife and Parks, the United States Fish and Wildlife Service regarding wolf and grizzly bear recovery, and to all areas worldwide where predators are increasing, by providing managers with information about potential carnivore impacts on elk populations.

Idaho, Montana, Wyoming↗

USGS2014

Contrasting past and current numbers of bears visiting Yellowstone cutthroat trout streams

Spawning cutthroat trout ( Oncorhynchus clarkii bouvieri ) were historically abundant within tributary streams of Yellowstone Lake within Yellowstone National Park and were a highly digestible source of energy and protein for Yellowstone’s grizzly bears ( Ursus arctos ) and black bears ( U. americanus ). The cutthroat trout population has subsequently declined since the introduction of non-native lake trout (Salvelinus namaycush), and in response to effects of drought and whirling disease ( Myxobolus cerebralis ). The trout population, duration of spawning runs, and indices of bear use of spawning streams had declined in some regions of the lake by 1997–2000. We initiated a 3-year study in 2007 to assess whether numbers of spawning fish, black bears, and grizzly bears within and alongside stream corridors had changed since 1997– 2000. We estimated numbers of grizzly bears and black bears by first compiling encounter histories of individual bears visiting 48 hair-snag sites along 35 historically fished streams.We analyzed DNA encounter histories with Pradel-recruitment and Jolly-Seber (POPAN) capture-mark-recapture models. When compared to 1997–2000, the current number of spawning cutthroat trout per stream and the number of streams with cutthroat trout has decreased. We estimated that 48 (95% CI¼42–56) male and 23 (95% CI¼21–27) female grizzly bears visited the historically fished tributary streams during our study. In any 1- year, 46 to 59 independent grizzly bears (8–10% of estimated Greater Yellowstone Ecosystem population) visited these streams. When compared with estimates from the 1997 to 2000 study and adjusted for equal effort, the number of grizzly bears using the stream corridors decreased by 63%. Additionally, the number of black bears decreased between 64% and 84%. We also document an increased proportion of bears of both species visiting front-country (i.e., near human development) streams. With the recovery of cutthroat trout, we suggest bears that still reside within the Lake basin will readily use this high-quality food resource.

Journal of Wildlife Management↗