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Simulation of climate-change effects on streamflow, lake water budgets, and stream temperature using GSFLOW and SNTEMP, Trout Lake Watershed, Wisconsin

Although groundwater and surface water are considered a single resource, historically hydrologic simulations have not accounted for feedback loops between the groundwater system and other hydrologic processes. These feedbacks include timing and rates of evapotranspiration, surface runoff, soil-zone flow, and interactions with the groundwater system. Simulations that iteratively couple the surface-water and groundwater systems, however, are characterized by long run times and calibration challenges. In this study, calibrated, uncoupled transient surface-water and steady-state groundwater models were used to construct one coupled transient groundwater/surface-water model for the Trout Lake Watershed in north-central Wisconsin, USA. The computer code GSFLOW (Ground-water/Surface-water FLOW) was used to simulate the coupled hydrologic system; a surface-water model represented hydrologic processes in the atmosphere, at land surface, and within the soil-zone, and a groundwater-flow model represented the unsaturated zone, saturated zone, stream, and lake budgets. The coupled GSFLOW model was calibrated by using heads, streamflows, lake levels, actual evapotranspiration rates, solar radiation, and snowpack measurements collected during water years 1998–2007; calibration was performed by using advanced features present in the PEST parameter estimation software suite. Simulated streamflows from the calibrated GSFLOW model and other basin characteristics were used as input to the one-dimensional SNTEMP (Stream-Network TEMPerature) model to simulate daily stream temperature in selected tributaries in the watershed. The temperature model was calibrated to high-resolution stream temperature time-series data measured in 2002. The calibrated GSFLOW and SNTEMP models were then used to simulate effects of potential climate change for the period extending to the year 2100. An ensemble of climate models and emission scenarios was evaluated. Downscaled climate drivers for the period 2010–2100 showed increases in maximum and minimum temperature over the scenario period. Scenarios of future precipitation did not show a monotonic trend like temperature. Uncertainty in the climate drivers increased over time for both temperature and precipitation. Separate calibration of the uncoupled groundwater and surface-water models did not provide a representative initial parameter set for coupled model calibration. A sequentially linked calibration, in which the uncoupled models were linked by means of utility software, provided a starting parameter set suitable for coupled model calibration. Even with sequentially linked calibration, however, transmissivity of the lower part of the aquifer required further adjustment during coupled model calibration to attain reasonable parameter values for evaporation rates off a small seepage lake (a lake with no appreciable surface-water outlets) with a long history of study. The resulting coupled model was well calibrated to most types of observed time-series data used for calibration. Daily stream temperatures measured during 2002 were successfully simulated with SNTEMP; the model fit was acceptable for a range of groundwater inflow rates into the streams. Forecasts of potential climate change scenarios showed growing season length increasing by weeks, and both potential and actual evapotranspiration rates increasing appreciably, in response to increasing air temperature. Simulated actual evapotranspiration rates increased less than simulated potential evapotranspiration rates as a result of water limitation in the root zone during the summer high-evapotranspiration period. The hydrologic-system response to climate change was characterized by a reduction in the importance of the snow-melt pulse and an increase in the importance of fall and winter groundwater recharge. The less dynamic hydrologic regime is likely to result in drier soil conditions in rainfed wetlands and uplands, in contrast to less drying in groundwater-fed systems. Seepage lakes showed larger forecast stage declines related to climate change than did drainage lakes (lakes with outlet streams). Seepage lakes higher in the watershed (nearer to groundwater divides) had less groundwater inflow and thus had larger forecast declines in lake stage; however, ground-water inflow to seepage lakes in general tended to increase as a fraction of the lake budgets with lake-stage decline because inward hydraulic gradients increased. Drainage lakes were characterized by less simulated stage decline as reductions in outlet streamflow of set losses to other water flows. Net groundwater inflow tended to decrease in drainage lakes over the scenario period. Simulated stream temperatures increased appreciably with climate change. The estimated increase in annual average temperature ranged from approximately 1 to 2 degrees Celsius by 2100 in the stream characterized by a high groundwater inflow rate and 2 to 3 degrees Celsius in the stream with a lower rate. The climate drivers used for the climate-change scenarios had appreciable variation between the General Circulation Model and emission scenario selected; this uncertainty was reflected in hydrologic flow and temperature model results. Thus, as with all forecasts of this type, the results are best considered to approximate potential outcomes of climate change.

Wisconsin↗

Establishment of a cell line with reticulo-endothelial characteristics from a rainbow trout spleen explant

A cell line from rainbow trout ( Oncorhynchus mykiss ) with phagocytic-like characteristics was established. First we found that it was necessary to inject the fish with antibiotics (penicillinstreptomycin) in order to clear tissue of bacterial contamination. Two days later, the spleen was excised and minced with scissors in MEM10. The large number of erythrocytes in the suspension were removed by low centrifugation, then the tissue fragments were incubated on tissue culture flasks at 18°C for 30 days with complete changes of media every other day. After 30 days in culture, primary explants from spleen were composed of three types of cells. The majority were large mononucleate, plecmorphic cells with thinly spread cytoplasm. These cells were trypsinized and subcultured. Another cell types was simple, round cells, somewhat similar to mature lymphocytes, while the third type appeared to be similar to fibroblastic cells. After 9 months with the culture in 17 to 20 passages, the predominate cell type was showing similarities to phagocytic cell. These cells had a marked reticular cytoplasm and grew individually without parallel orientations. By enzyme-specific stains, the cells were observed to have abundant acid phosphatase and β-glucuronidase activities of the cytoplasm. They were negative for peroxidase. The cells were also found to have highly adherent and phagocytic properties when incubated with latex particles. The morphological, enzymatic, and functional findings suggested the possibility that these cells in culture have some properties similar to the cells which are composed of reticulo-endothelial system.

Fish Pathology↗

Challenges of implementing a multi-agency monitoring and adaptive management strategy for federally threatened Chinook salmon and steelhead trout during and after dam removal in the Elwha River

Adaptive management, a process of planning, implementing, and evaluating management strategies, is often recommended for monitoring ecological systems. However, few examples of successful implementation and retrospective case studies exist. We provide a case study of adaptively managing hatchery-assisted protection and recovery for Chinook salmon ( Oncorhynchus tshawytscha ) and winter steelhead trout ( O. mykiss ) during and after the removal of two large mainstem dams in the Elwha River, WA. We summarize key aspects of the monitoring and adaptive management plan over the last decade and highlight successes, challenges, and complications during the plan’s implementation. The Elwha Monitoring and Adaptive Management Guidelines included a trigger-based system for moving through four phases of recovery that included preservation, recolonization, local adaptation, and viable natural population, each with differing levels of hatchery production as the management actions. The monitoring component of the plan has been very successful, providing critical data to guide management actions that otherwise may not have occurred and, opportunistically, provided data for other native species in the Elwha River. Implementing adaptive management provided mixed results and was at times hindered by divergent management goals among project partners, the inflexibility of the Endangered Species Act regulatory requirements as implemented for this project, and conflicting information among guidance documents. We learned that some metrics and triggers in the plan were ill-defined or too difficult to measure in the field. In some cases, the performance indicators and/or triggers were successfully modified to incorporate what was learned; however, in other cases, we were unable to revise the values due to differing opinions among partners. The ability to reach consensus on revised triggers appeared to be influenced by the recovery trajectory of the species involved. The implemented adaptive management strategy resulted in substantial collaboration and learning, which resulted in revised management strategies, but was imperfect. Sufficient long-term funding is necessary to implement a well-designed monitoring program and could benefit from including a defined leadership position to shepherd and facilitate a multi-stakeholder adaptive management program. Additionally, incorporating adaptive management into legally binding conditions under the Endangered Species Act is feasible, but requires substantial pre-planning in close coordination with regulatory agencies.

Washington↗

Evidence for the use of mucus swabs to detect Renibacterium salmoninarum in brook trout

Efforts to advance fish health diagnostics have been highlighted in many studies to improve the detection of pathogens in aquaculture facilities and wild fish populations. Typically, the detection of a pathogen has required sacrificing fish; however, many hatcheries have valuable and sometimes irreplaceable broodstocks, and lethal sampling is undesirable. Therefore, the development of non-lethal detection methods is a high priority. The goal of our study was to compare non-lethal sampling methods with standardized lethal kidney tissue sampling that is used to detect Renibacterium salmoninarum infections in salmonids. We collected anal, buccal, and mucus swabs (non-lethal qPCR) and kidney tissue samples (lethal DFAT) from 72 adult brook trout ( Salvelinus fontinalis ) reared at the Colorado Parks and Wildlife Pitkin Brood Unit and tested each sample to assess R. salmoninarum infections. Standard kidney tissue detected R. salmoninarum 1.59 times more often than mucus swabs, compared to 10.43 and 13.16 times more often than buccal or anal swabs, respectively, indicating mucus swabs were the most effective and may be a useful non-lethal method. Our study highlights the potential of non-lethal mucus swabs to sample for R. salmoninarum and suggests future studies are needed to refine this technique for use in aquaculture facilities and wild populations of inland salmonids.

Pathogens↗

Discriminating among Pacific salmon, Rainbow Trout, and Atlantic Salmon species using common genetic screening methods

The five most common species of Pacific salmon, Rainbow Trout (steelhead) Oncorhynchus spp., and Atlantic Salmon Salmo salar intermingle in the North Pacific Ocean and its freshwater tributaries. Efficient morphological methods for distinguishing among these species are sometimes limited by condition of the specimen (degraded or missing morphology), life history stage, or training of the observer. Researchers have successfully applied various genetic methods to distinguish among these species when morphological analyses are not possible, but they cannot easily incorporate these methods into standard fish and wildlife population monitoring analysis workflows. Here we test five 5′–3′ exonuclease (TaqMan) assays developed from mitochondrial genes and provide novel methods that take advantage of TaqMan output to distinguish among these species. We found that combinations of as few as two of the five assays were adequate to distinguish all species. TaqMan chemistry is designed to interrogate a single nucleotide locus. We also explore the basis for the variation in the observed scatter plot distributions (variation in florescent signals) and show that this variation is due to nucleotide diversity in and near the probe site. Because the SNPs underlying the assays developed here are all physically close to one another along the mitochondrial genome, the potential exists to develop a single DNA sequence-based assay to discriminate among salmon species. This single assay can be added to a genotyping-by-sequencing panel to identify and exclude nontarget species from analyses.

Journal of Fish and Wildlife Management↗

The distribution of anadromy in steelhead / rainbow trout in the Eel River, northwestern California

To inform management and conservation of the species, we investigated the distribution of anadromy and residency of steelhead/rainbow trout ( Oncorhynchus mykiss ) in the Eel River of northwestern California. We determined maternal anadromy versus residency for 106 juvenile O. mykiss using otolith microchemistry. To attempt to relate patterns of anadromy with environmental factors known to influence its distribution in O. mykiss in other places, fish were collected from 52 sites throughout the drainage covering a range of stream size (0.1–7.7 m 3 / s estimated mean annual run-off) and distance from the ocean (23–219 km). Sixty-one of 91 fish sampled below prospective barriers had anadromous mothers, while 1 of 15 fish sampled above barriers had an anadromous mother. We did not detect any influence of stream size or distance from the ocean on the occurrence of anadromy. Fish with resident mothers were found at 21 of 46 sites below barriers. The current broad distribution of fish with resident mothers indicates the importance of maintaining freshwater conditions suitable for resident adults and juveniles age-1 and older, such as preserving dry-season streamflows.

California↗

An antigenic comparison between infectious hematopoietic necrosis virus (OSV strain) and the virus of haemorrhagic septicaemia of rainbow trout (Salmo gairdneri) (Denmark strain) by cross neutralization

The infectious hematopoietic necrosis virus (OSV strain) and the virus of haemorrhagic septicaemia of rainbow trout ( Salmo gairdneri ) (Denmark strain) were examined for possible antigenic relationship by plaque neutralization using homologous and heterologous antisera. No neutralization of either virus was observed on exposure to heterologous antiserum. This indicates that there is no antigenic relationship between these two viruses as determined by this method.

Journal of Wildlife Diseases↗

Post-spawning mortality of rainbow trout (Salmo gairdneri) associated with Lactobacillus

A Lactobacillus sp. was consistently isolated from dead and moribund postspawning brood stock rainbow trout. Pathology was characterized by massive chronic inflammation throughout the abdominal cavity and formation of pseudomembranes. The bacteria were most abundant in spent testes. Repeated handling was considered to be the major stressor leading to this infection and subsequent high mortality.

Journal of Wildlife Diseases↗

Dieldrin and DDT: accumulation from water and food by lake trout (Salvelinus namaycush) in the laboratory

In the laboratory we measured the amounts of dieldrin and p,p'DDT accumulated by fish from contaminated water and food to determine how fish from Lake Michigan accumulate high concentrations of these insecticides from an environment where the concentrations in water are generally less than 0.01 ppb. Eight groups of yearling lake trout (Salvelinus namaycush) were exposed to different combinations of dieldrin and p,p'DDT in water and food. Concentrations of dieldrin and p,p'DDT ranged from 0.006 to 0.010 ppb in water and from 1,700 to 2,300 ppb in food (Oregon moist pellets). After 152 days of exposure to insecticides in water, fish had accumulated an average of 478 ppb dieldrin or 352 ppb p,p'DDT. Fish exposed to dieldrin and p,p'DDT in food accumulated 470 and 648 ppb, respectively. However, it was difficult to determine exactly how much of either insecticide was accumulated from the food because trace amounts (0.003-0.004 ppb) had leached from food or feces. After exposure to the insecticide was terminated, fish eliminated dieldrin at a much faster rate than p,p'DDT. In fish exposed to a combination of dieldrin and p,p'DDT in water and then held for 125 days in uncontaminated water, the total amount of dieldrin (I?g) declined 89%, but the total amount of p,p'DDT remained unchanged. We used data from this study to estimate how much p,p'DDT adult Lake Michigan coho salmon (Oncorhynchus kisutch) accumulated from water and from food during a 104-day period (May-August 1968). The estimates suggest that during these months coho salmon accumulated most of the body burden of p,p'DDT from food.

Proceedings of the Conference on Great Lakes Resea↗

Mass-marking of otoliths of lake trout sac fry by temperature manipulation

The otoliths of 676,000 sac fry of lake trout Salvelinus namaycush in 1986, and of 1,100,000 in 1987, were marked by daily manipulation of water temperature. The fish were stocked into Lake Huron in the spring. Otolith marks consisted of groups of daily growth rings accentuated into recognizable patterns by steadily raising and lowering the temperature about 10 degrees C (from a base of 1-4 degrees C) over 14 h. In 1987, groups of marked and control fish were held for 6 months. The otoliths were removed from samples of the fish, embedded in epoxy, thin sectioned by grinding in the sagittal plane, etched, and viewed by using a combination of a compound microscope (400-1000x) and a video enhancement system. One or more readable otolith sections were obtained from 39 of a sample of 40 fish. Three independent readers examined 41 otoliths for marks and correctly classified the otoliths, with accuracies of 85, 98, and 100%, as being from marked or unmarked fish. The exact number of rings in a recognizable pattern sometimes differed from the number of temperature cycles to which the fish were exposed. Counts of daily rings within groups of six rings varied less than counts within groups of rings.

American Fisheries Society Symposium↗

Trends of chlorinated organic contaminants in Great Lakes trout and walleye from 1970-1998

Levels of chlorinated organic contaminants in predator fish have been monitored annually in each of the Great Lakes since the 1970s. This article updates earlier reports with data from 1991 to 1998 for lake trout (Salvelinus namaycush) and (Lake Erie only) walleye (Sander vitreus) to provide a record that now extends nearly 30 years. Whole fish were analyzed for a number of industrial contaminants and pesticides, including polychlorinated biphenyls (PCBs), dichloro-diphenyl-trichloroethane (DDT), dieldrin, toxaphene, and mirex, and contaminant trends were quantified using multicompartment models. As in the past, fish from Lakes Michigan, Ontario, and Huron have the highest levels of PCBs, DDT, and dieldrin; Superior has the highest levels of toxaphene; and Ontario has the highest levels of mirex. In the period after curtailment of chemical use, concentrations rapidly decreased, represented by relatively short half-lives from approximately 1 to 9 years. Although trends depend on both the contaminant and the lake, in many cases the rate of decline has been decreasing, and concentrations are gradually approaching an irreducible concentration. For dioxin-like PCBs, levels have not been decreasing during the most recent 5-year period (1994 to 1998). In some cases, the year-to-year variation in contaminant levels is large, mainly because of food-web dynamics. Although this variation sometimes obscures long-term trends, the general pattern of a rapid decrease followed by slowing or leveling-off of the downward trend seems consistent across the Great Lakes, and future improvements of the magnitude seen in the 1970s and early 1980s likely will take much longer.

Archives of Environmental Contamination and Toxico↗

Growth and mortality of fry of Lake Michigan lake trout during chronic exposure to PCB's and DDE

Fry hatched from eggs of Lake Michigan lake trout (Salvelinus namaycush) were exposed (beginning about 1 week after hatching) to contaminant concentrations of PCB's and DDE similar to those in water and plankton in southeastern Lake Michigan (1X level), and to concentrations about 5 (5X) and 25 (25X) times greater. Body concentrations of contaminants in fry (I?g/g) decreased at 1X levels of PCB's and at 1X and 5X levels of DDE, but generally increased at all other contaminant exposure levels. Uptake of PCB's and DDE was evident from increases in body burden (I?g/fish) of the contaminants at all exposure levels and the controls. Growth was not significantly affected by any of the contaminant exposures. Mortalities of fry exposed to the lower concentrations (1X and 5X) were significantly less than those of control fry before day 56; however, between days 57 and 136, mortality rates increased dramatically and were significantly higher in all nine exposed groups than in the control group. For the last 40-day period (days 137-176), mortality was low and leveled off, but continued to be significantly higher in all exposed fry (except those in 1X and 5X PCB's) than in control fry. By the end of the 176-day study, the total cumulative mortality ranged from 30.5 to 46.5% in the exposed groups and was 21.7% in the control group.

Technical Paper↗

Temperature selection by young lake trout after chronic exposure to PCB's and DDE

Temperature selection tests were conducted with fry of Lake Michigan lake trout (Salvelinus namaycush) exposed to PCB's, DDE and a combination of these contaminants in food and water at levels 25 times the ambient levels in plankton and water in Lake Michigan. The observed effect of the contaminants was a lowering of the preferred temperature. After 98 days of exposure, mean preferred temperatures were 10.3A?C for fry exposed to PCB's, 9.8A?C for those exposed to DDE, and 8.7A?C for those exposed to PCB's + DDE, as compared with 11.2A?C for control fry. Frequency distributions of residence temperatures were significantly (P < 0.01) different among all treatments. Such a change in the preferred temperature caused by a contaminant could reduce the energetic efficiency of a fish and thereby reduce growth and survival.

Technical Paper↗

Detecting contaminant-induced apoptosis and necrosis in lake trout thymocytes via flow cytometry.

This chapter details the cytofluorometric techniques employed to assess levels of active (apoptosis) and passive (necrotic) cell death in untreated and contaminant-treated fish thymocytes. The thymus is believed to be a central component of hematopoiesis and immune function in teleosts (Abelli et al., 1996). Hence, chemically-elicited adverse effects to the thymus may result in immunomodulation and organ dysfunction. However, it is not well documented that environmental contaminants induce apoptosis, or programmed cell death. There is some evidence suggesting that low level exposure to waterborne contaminants can specifically induce cell death in the olfactory epithelium of rainbow trout (Julliard et al., 1996). Presently, only limited information is available in the literature regarding apoptotic death in piscine immune cells (Alford et al., 1994; Greenlee et al., 1991).

Book chapter↗

Furunculosis in wild trout

Furunculosis, or as it has been more appropiately termed, "fish septicemia," is a disease primarily affecting salmon and trout. It is caused by the invasion and growth of Bacterium salmonicida Emmerich and Weibel, a Gram negative, non-spore forming, diplobacterium belonging to the family Bacteriaceae Cohn. After gaining entrance to the host, presumably by way of the digestive tract, the organism is spread by the blood stream and produces focal necrosis and subsequent liquefaction throughout the tissues. The more conspicuous gross lesions are those of the body musculature, characterized by the formation of deep seated "boils" or "bloody blotches"&mdash;blisters filled with liquefied muscle tissue and blood. Under favorable conditions, the muscle lesions enlarge rapidly and eventually rupture through the skin producing a characteristic, ragged, deep, undermining type of ulcer. Although the muscle lesions are most conspicuous, essentially the same progressive necrosis and liquefaction are to be found throughout the internal organs, particularly in the spleen and kidneys. The host has no adequate defense mechanism against this disease and no verified recovery from furunculosis has ever been recorded. Cases may be arrested by low water temperatures or other adverse factors, only to break out with renewed vigor when conditions again become favorable. The reader is referred to Plehn, Davis, Williamson, and Duff and Stewart for a more complete description of furunculosis.

Copeia↗

Genetic variation reveals influence of landscape connectivity on population dynamics and resiliency of western trout in disturbance-prone habitats

Salmonid fishes have evolved and persisted in dynamic ecosystems where disturbance events vary in frequency, magnitude, timing, and duration, as well as the specific nature of associated effects (e.g., changes in thermal or flow regimes, geomorphology, or water chemistry). In the western United States, one of the major drivers of disturbance in stream ecosystems is fire. Although there is a growing consensus that fish populations can ultimately benefit from the productive and heterogeneous habitats created by fire, to persist they obviously have to withstand the immediate and shorter-term effects of fire, which can reduce or even extirpate local populations. Movement among interconnected stream habitats is thought to be an important strategy enabling persistence during and following fire, and there is mounting concern that the extensive isolation of salmonid populations in fragmented habitats is reducing their resiliency to fire. In spite of this concern, there are few direct observations of salmonid responses to fire. In fact, guidance is based largely on a broader understanding of the influences of landscape structure and disturbance in general on salmonid fishes, and there is considerable uncertainty about how best to manage for salmonid resilience to wildfire. Studies are limited by the difficult logistics of following fish responses in the face of unpredictable events such as wildfires. Therefore, BACI (Before-After-Control-Impact) study designs are nearly impossible, and replication is similarly challenging because fires are often low-frequency events. Furthermore, conventional ecological study approaches (e.g., studies of fish distribution, abundance, life histories, and movement) are logistically difficult to implement. Overall, a major challenge to understanding resilience of salmonid populations in fire-prone environments is related to moving beyond localized case studies to those with broader applicability in wildfire management . Genetic data can be useful for overcoming many of the limitations inherent in ecological studies. Here we review several case studies of western trout where population genetic data have provided insight about fish responses to fragmentation and disturbance more generally, and specifically in relation to fire. Results of these studies confirm the importance of movement and landscape connectivity for ensuring fish persistence in fire-prone landscapes, and highlight the usefulness of genetic approaches for broad-scale evaluation and monitoring of population responses to fire and related management actions.

Technical Report↗

Modeling brook trout presence and absence from landscape variables using four different analytical methods

As a part of the Great Lakes Regional Aquatic Gap Analysis Project, we evaluated methodologies for modeling associations between fish species and habitat characteristics at a landscape scale. To do this, we created brook trout Salvelinus fontinalis presence and absence models based on four different techniques: multiple linear regression, logistic regression, neural networks, and classification trees. The models were tested in two ways: by application to an independent validation database and cross-validation using the training data, and by visual comparison of statewide distribution maps with historically recorded occurrences from the Michigan Fish Atlas. Although differences in the accuracy of our models were slight, the logistic regression model predicted with the least error, followed by multiple regression, then classification trees, then the neural networks. These models will provide natural resource managers a way to identify habitats requiring protection for the conservation of fish species.

Book chapter↗

Analysis of brook trout spatial behavior during passage attempts in corrugated culverts using near-infrared illumination video imagery

We used video recording and near-infrared illumination to document the spatial behavior of brook trout of various sizes attempting to pass corrugated culverts under different hydraulic conditions. Semi-automated image analysis was used to digitize fish position at high temporal resolution inside the culvert, which allowed calculation of various spatial behavior metrics, including instantaneous ground and swimming speed, path complexity, distance from side walls, velocity preference ratio (mean velocity at fish lateral position/mean crosssectional velocity) as well as number and duration of stops in forward progression. The presentation summarizes the main results and discusses how they could be used to improve fish passage performance in culverts.

Conference Paper↗