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Neutron activation analysis in hydrology

Neutron activation analysis in hydrogeochemical and related investigations is increasingly practical because of developments in radiation detectors and computerized data processing. While neutron activation is the most widely used kind of activation analysis other kinds (for example, charged particle activation) are available for special applications. Neutron activation analysis is promising because approximately 70 percent of the elements in the periodic table are detected with satisfactory sensitivity, contamination from reagents is eliminated, simultaneous determination of more than 20 elements is often possible, technique is versatile, is applicable to small samples and is non-destructive in the instrumental form. Developments in theU.S. Geological Survey include a special sampling technique for water; a comprehensive technique using carriers precipitated with sulfide to concentrate desired trace elements; a determination of mercury, silver, and gold; determination of aluminum, vanadium and nine other elements; determinations of two groups of rare earth elements; and adaptations of the analytical methods to sediment and biota.

Open-File Report

Lessons in business recovery following the 2023 Kahramanmaraş earthquake sequence, Türkiye informed by women entrepreneurs

On 6 February 2023, Southern Türkiye was hit by devastating earthquakes, directly affecting over 14 million people in 11 cities, causing more than 50,000 deaths and the destruction of more than 800,000 buildings. This article goes beyond the physical damage imposed by the catastrophe to discuss the effects of the earthquakes on the operations of women-owned businesses. The mixed-method study with entrepreneurs belonging to a women’s business association operating in a moderately disrupted part of the region explores their struggles and recovery expectations. Thirty-five questionnaires were analyzed to identify the reasons for business closure, challenges, and needs faced in the post-disaster period and their recovery strategies. In addition, 23 entrepreneurs participated in roundtable discussions to provide a broader context to their responses to survey topics as well as lessons learned. Across both the survey and roundtables, while many respondents reported minor physical damage to their building, they also experienced financial and personal challenges from disruption to equipment, infrastructure, services, supply chains, institutional decisions, employee well-being, and customer base. Many used their business resources and personal savings to assist employees and others in the community. The women entrepreneurs often felt their recovery needs were ignored by government and private relief organizations and encountered barriers to receiving assistance from public and private institutions. Organizing together as women in business, even informally, provided mutual support during the crisis and recovery periods and catalyzed their role in support of their communities. The results illuminate functional community recovery as a balance of recovery of built infrastructure functionality and recovery of the broader social and economic fabric of the community.

southern Turkey

Precipitation-based flood-inundation maps for the East Fork Little Blue River and tributaries at Lee’s Summit, Missouri, 2024

The U.S. Geological Survey, in cooperation with the City of Lee’s Summit, Missouri, assessed flooding of the East Fork Little Blue River and tributaries for varying precipitation magnitudes and durations, varying antecedent runoff conditions, and projected climate-change conditions. The precipitation scenarios were used to develop a library of flood-inundation maps for a 2.95-mile reach of the East Fork Little Blue River and tributaries within the city. A two-dimensional U.S. Army Corps of Engineers Hydrologic Engineering Center–River Analysis System (HEC–RAS; ver. 6.5) rain-on-grid model was calibrated to selected runoff events representing a range of antecedent runoff conditions and hydrologic responses. Lowest adjacent grades for structures within the nearby study area were incorporated into the terrain, and depth grids and water-surface elevation grids were developed for the study area. Simulated velocities at selected bridge locations were also developed from the model. The model was calibrated using water-surface elevation data collected from water-level loggers (pressure transducers) and streamflow measurements and water-surface elevation measurements made at a reference point during runoff events. The calibrated HEC–RAS model was used to simulate streamflows from design rainfall events of 15-minute to 24-hour durations and ranging from a 100- to 0.1-percent annual exceedance probability (1-year to 1,000-year recurrence intervals). Flood-inundation maps were produced for depths at a reference location of 3 to 16 feet, or a depth exceeding the 0.1-percent annual exceedance probability interval precipitation. The results of each precipitation duration-frequency value were represented by a 1-foot-increment inundation map based on the generated peak streamflow from that rainfall event and the corresponding water-surface elevation at the East Fork Little Blue River reference location. Within the HEC–RAS model, 240 scenarios were developed from the design rainfall events with each of 3 antecedent conditions. Additional scenarios were created to simulate the effects of projected precipitation scenarios on the 100-year recurrence interval, 24-hour storm and the 100-year recurrence interval, 6-hour storm. All simulation results were assigned to a flood-inundation map condition based on the generated peak flow and corresponding water-surface elevation at the East Fork Little Blue River reference location. The flood-inundation maps are shown on a web mapping application made available to the public through the City of Lee’s Summit (hyperlink will be added when available). The flood-inundation maps are tied to real-time precipitation data obtained from the Automated Surface Observing System weather station at the Lee’s Summit Municipal Airport, accessible at https://mesonet.agron.iastate.edu/request/download.phtml?network=MO_ASOS . The availability of these maps, along with information regarding observed rainfall, could help provide emergency management personnel and residents with information that is critical for flood-response activities, such as evacuations and road closures, and for postflood recovery efforts.

Missouri

Groundwater structures fish growth and production across a riverscape

Landscapes are composed of habitat patches and conditions that vary across space and time. While habitat variability and complexity can support important ecological processes and ecosystem services, the dynamic nature of habitats can also constrain organismal growth and production as optimal conditions are fleeting. In riverine ecosystems, groundwater discharge to streams stabilises water temperature and flow regimes, thus mediating how habitat complexity is expressed. Yet, how stable habitats structure growth and production within the broader landscape matrix is not well understood. In this study, we explored the effects of groundwater on spatiotemporal variation in growth and production for juvenile Yellowstone cutthroat trout ( Oncorhynchus virginalis bouvieri ) across the upper Snake River catchment, Wyoming, USA. We combined machine learning techniques and remotely sensed landscape data to estimate groundwater availability across the river network, which we linked to stream temperature regimes and conspecific density. We then used Bayesian hierarchical models to quantify the effects of temperature, density and groundwater on spatiotemporal variation in fish growth and production in 52 focal reaches. Finally, we predicted body size trajectories and trends in total production continuously over both space and time to understand the effect of groundwater at the riverscape scale. Groundwater discharged to streams where topography changes abruptly in valley-bottom areas underlain by coarse glacial deposits. Groundwater stabilised temperature regimes and was associated with high trout densities. Temperature and density, in turn, interacted to influence growth rates: growth increased strongly with temperature, but this effect was reduced when density was high. Accordingly, variation in groundwater availability among stream reaches diversified growth and production regimes. In reaches with low groundwater availability, growth and production declined over time from summer maxima. In contrast, in reaches with high groundwater availability, temporal trends in growth and production were hump-shaped—peaking in autumn—and mean production was greater. At the riverscape scale, temporal asynchrony in growth rates generated convergent spatial variation in growth capacity, but—when combined with density—led to the formation of distinct hotspots of production. Our results demonstrate how groundwater, an important driver of aquatic ecosystem heterogeneity, structures trout growth and production across space and time. Importantly, rare, but stable habitats may disproportionately affect ecological processes and serve as key sources of population diversity at larger spatial scales.

Wyoming

USGS—An Unparalleled Scientific Asset

The U.S. Geological Survey (USGS) delivers information critical to powering our economy, managing our natural resources, and keeping Americans safe and healthy. 1 Mapping the Nation $21B Geologic maps save users an estimated 15% in annual costs: a value of between $14B and $21B. $25.6B in annual value to users of imagery from Landsat satellites, which were codeveloped by NASA and the USGS and operated through their lifespans by the USGS. $13.5B in annual benefits is generated by the USGS's 3D Elevation Program. Securing America’s Energy Independence 44% USGS-identified undiscovered geothermal energy is equal to 44% of current U.S. electricity generation. 29.4B barrels of oil and 391.6 trillion cubic feet of gas in recoverable resources are available on U.S. public lands based on USGS assessments. Protecting Americans’ Health and Safety $424B in recent wildland fire damages highlight the need for USGS fire science, which supports efforts to protect communities and reduce risk. USGS earthquake, volcano, landslide, and coastal hazard monitoring and information save lives and minimize costs; for example, $2.8M can be saved because of USGS enhanced information about a Mauna Loa eruption. $4.5B is the estimated cost of annual flooding. Through a network of over 11,885 streamgages, the USGS supports public safety and enables forecasts, early warning systems, and management actions that protect lives and property. Supporting National Security $3.1B The USGS identified a $3.1B risk to the American economy if China restricts gallium imports. This is one example underscoring the importance of the USGS mapping critical minerals, investigating supply chains, and producing the Nation’s critical minerals list. Enhancing Our Lands and Waters $21B in estimated annual costs results from invasive species. The USGS’s invasive species research informs approaches used to reduce their effects on agriculture, water infrastructure, disease transmission, fisheries, and outdoor recreation. USGS innovations support early warnings for harmful algal blooms—over $2M in yearly benefits are provided to Kansas alone. $45B USGS science informs the management of big game (such as deer and elk). The big-game hunting industry contributes $45B to the U.S. economy. Fostering American Prosperity $4.1T Mineral commodities are necessary for the $4.1T in value added to the GDP by major industries that consume processed mineral materials and employ 1 million workers. Because of this, USGS data on mineral supply, demand, and trade are highly valued. 45,000 metric tons Rare earths power the growing technology economy, including cell phones, electric vehicles, and medical devices. For over 70 years, USGS work has supported the discovery of rare earth resources in California’s Mountain Pass area, which produced 45,000 metric tons of rare earth concentrates in 2024—over 11% of the global supply. Guarding American Food Security $70.2B USGS science informs early warning systems and management strategies to mitigate disease outbreaks in agriculture—critical research on highly pathogenic avian influenza, for example, helps safeguard the $70B value in poultry and egg production. $11.8B USGS groundwater tools are vital for agriculture; for example, in the Mississippi Alluvial Plain, 65% of farming relies on groundwater to support its $11.8B annual industry. 1 Values throughout are given in billions (B), millions (M), and trillions (T) of U.S. dollars. GDP is “Gross Domestic Product.” Percentages are shown as %.

General Information Product

A cross-site comparison of ecosystem- and plot-scale methane fluxes across multiple sites

Wetland and upland ecosystems play significant but opposing roles in the global methane (CH 4 ) budget, acting as natural sources and sinks, respectively. Two of the most common approaches for measuring CH 4 fluxes (FCH 4 ) are chambers, which measure fluxes at fine spatial scales (ca. 1 m 2 ), and eddy covariance (EC) towers, which integrate fluxes across larger footprints (ca. 100–10 000 m 2 ). Although chamber and EC observations have been combined in various syntheses and databases to estimate CH 4 budgets, a unified cross-site evaluation of FCH 4 estimates at plot and ecosystem scales is lacking. As a first step toward a systematic spatiotemporal scaling of EC tower and chamber footprints, we quantified differences in site-level aggregate FCH 4 between EC and chamber measurements ( Δ FCH 4 ) across ten wetland and upland sites at half-hourly, hourly, daily, weekly, monthly, and annual timescales. We found that ecosystem-scale median FCH 4 was consistently higher than plot-scale FCH 4 at all temporal scales, with the smallest difference at the daily timescale (multi-site median Δ FCH 4 : 1.36 nmol m −2 s −1 ; median ecosystem-scale FCH 4 = 1.56 nmol m −2 s −1 , median plot-scale FCH 4 = 0.06 nmol m −2 s −1 ) and the largest at annual scales (2.58 nmol m −2 s −1 ; median ecosystem-scale FCH 4 = 25.91 nmol m −2 s −1 , median plot-scale FCH 4 = 6.55 nmol m −2 s −1 ). In general, the agreement between ecosystem- and plot-scale FCH 4 decreased with finer temporal resolution (from Spearman ρ = 0.95 at the annual scale to ρ = 0.65 at the half-hourly scale), while Δ FCH 4 variation was greatest at daily-to-annual scales. Key environmental predictors of Δ FCH 4 across the ten sites included plot-scale spatial heterogeneity, dominant vegetation type, vapor pressure deficit, atmospheric pressure, and friction velocity at the daily and monthly scales. Wind direction was a significant predictor only at the monthly scale, suggesting EC footprint effects at these sites. These findings suggest that accounting for variability in EC footprint extent, chamber measurement placement, and measurement artifacts is key to reconciling multi-scale FCH 4 observations across diverse ecosystems and refining CH 4 budgets.

Biogeosciences

Lithium resource in the Smackover Formation brines of Southern Arkansas

Lithium-rich brine deposits occur throughout the United States, including in the Smackover Formation. The concentration of lithium in Smackover Formation brines was predicted across southern Arkansas by using a machine-learning model that incorporated lithium concentration data and geologic information. Between 5.1 and 19.0 million metric tons of lithium are calculated to be present in the brines of the Smackover Formation in southern Arkansas. The range in possible total lithium reflects the uncertainty in machine-learning predictions of lithium concentrations and the range of Smackover Formation porosity. This estimate quantifies the in-place lithium resource and does not consider the technological and economic feasibility of extracting the lithium from the brines.

Arkansas

Postglacial ecosystem development of a hydrothermal landscape in Yellowstone National Park

The Yellowstone geo-ecosystem has been the subject of much research, but the ecological history of the Yellowstone Plateau volcanic field and its iconic geyser basins is less known. In this investigation, paleoenvironmental analyses of sediment cores from lakes in Lower Geyser Basin were compared with regional records and paleoclimate model simulations to reconstruct the vegetation, wildfire, limnology, hydrothermal dynamics, and climate drivers since deglaciation, 15,000 to 14,000 years ago. Pollen data from Lower Geyser Basin lakes reveal the strong influence of infertile rhyolitic soils on vegetation history: an initial late-glacial steppe was replaced by lodgepole pine forest from 12.8 to 11.0 ka, with little change in forest composition or cover thereafter despite changing climate. This stability contrasts with the more dynamic vegetation response on nonrhyolite substrates in the Yellowstone region where nutrient and moisture availability is greater. Highest wildfire activity and low lake nutrient levels in Lower Geyser Basin occurred from 12 to 4 ka, when summers were substantially warmer and drier and fire-inducing vapor pressure deficits were 29 to 56% higher. The hydrothermal history, inferred from sedimentary arsenic and cesium abundances, was spatially and temporally variable but lake-forming hydrothermal events align with periods of abundant moisture. Thus, long-term changes in wildfire, limnology, and, to some extent, hydrothermal activity were governed by insolation-driven climate variations, whereas the vegetation response was muted and constrained by geologic processes. These findings suggest that warmer, drier conditions in the future could result in less hydrothermal activity yet little change in forest cover across the Yellowstone Plateau volcanic field despite more wildfires.

Idaho, Montana, Wyoming

Thickness of the Saudi Arabian crust

As part of a joint Saudi Geological Survey (SGS) and U.S. Geological Survey (USGS) project, we analyzed P-wave receiver functions from seismic stations covering most of the Kingdom of Saudi Arabia to map the thickness of the crust across the Arabia Plate. We present an update of crustal-thickness estimates and fill in gaps for the western Arabian Shield and the rifted margin at the Red Sea (the coastal plain), as well as the eastern Arabian Platform. We applied a conventional H-k stacking algorithm and included careful attention to stacking weights, two forms of sedimentary corrections for stations located on the Arabian Platform, and additional processing for noisy stations. We obtained useful results at 154 stations from 898 teleseismic events over a 2-year period from 1995–1997 (for non-SGS stations) and a 6-year period from 2008–2014 (for SGS stations). Average crustal thickness (that is, depth to the Mohorovičić discontinuity [Moho] below the surface) beneath the Red Sea coastal plain (the rift margin) is 29 kilometers (km), beneath the volcanic fields (known in Arabic as harra [plural] or harrat [singular]) is 35 km, beneath the Arabian Shield (excluding harrats) is 37 km, and beneath the Arabian Platform is 38 km. Crustal thinning appears not to extend east of the rift escarpment, suggesting uniform extension that is no broader at depth than at the surface. In contrast to some previous claims that the Arabian Platform crust is thicker than that of the Arabian Shield, we find no statistically significant difference between their whole crustal thicknesses. However, the average subsedimentary crustal thickness (that is, the crystalline crust) for stations on the Arabian Platform is 34 km, 3 km thinner than the crust of the Arabian Shield. Individual station P-wave (pressure) velocity and S-wave (shear) velocity ratios ( V P / V S ) are highly variable for the Arabia Plate, ranging from 1.60 to 1.97 and averaging 1.75, with a standard deviation of 0.07. There are no statistically significant differences between V P / V S ratios of the different geologic regions of Saudi Arabia. Similar V P / V S ratios, coupled with similar crustal thicknesses for harrats and the Arabian Shield, indicate that Cenozoic magmatism has contributed negligibly to crustal growth.

Professional Paper

A crosswalk of the 2015 World Terrestrial Ecosystems to the International Union for the Conservation of Nature Global Ecosystem Typology Framework

To support ecosystem mapping and accounting applications, we aligned the 2015 U.S. Geological Survey/Esri/The Nature Conservancy-World Terrestrial Ecosystems (WTEs) with the International Union for Conservation of Nature Global Ecosystem Typology (GET) framework. This process, known as “crosswalking,” enabled the development of a global map of GET level 3 Ecosystem Functional Groups (EFGs) at a 250-meter spatial resolution. Crosswalking involved manually assigning 1,781 biogeographically stratified WTEs to their most probable EFG based on similarities in climate, terrain, vegetation, and geographic distribution. We compared attributes of the WTE dataset with summary characteristics of the EFGs. The resulting crosswalked global map of International Union for Conservation of Nature GET ecosystems is intended to be useful for standardizing ecosystem classification and reporting under frameworks such as the Kunming-Montreal Global Biodiversity Framework and the United Nations System of Environmental-Economic Accounting. We discuss key challenges in reconciling non-identical classifications, such as many-to-one relationships and variation in data quality.

Open-File Report

Prediction of regional broadband strong ground motions using a teleseismic source model of the 18 April 2014 Mw 7.3 Papanoa, Mexico, earthquake

To estimate predicted ground motion from a teleseismic slip model, we use a low‐ and high‐frequency hybrid method to simulate the regional, strong ground motions observed following the 18 April 2014 moment magnitude ( ⁠M w ⁠ ) 7.3 Papanoa, Mexico, earthquake. To generate the regional ground motion at low frequencies (<1 Hz), a teleseismically derived, finite‐fault, kinematic model is used to define the earthquake source, taking into account slip‐model variations identified with a parameter sampling approach that considers possible errors in the fault geometry, the hypocenter depth, and the rupture velocity. A 3D crustal model is used to calculate the low‐frequency ground motions using a finite‐element calculation that includes topography and considers variations in the source model to estimate the uncertainty in the calculations. High frequencies (>1 Hz) are added using a 1D full‐wave propagation code that estimates uncertainties by considering multiple random distributions of slip with different spatial correlation lengths. The synthetic, broadband (0.05–10.0 Hz) ground motions are obtained by combining the low‐ and high‐frequency portions match filtered at 1 Hz. These synthetic ground motions are compared with the regional observations using velocity records, peak ground acceleration, and medians of the orientation‐independent response spectra of the horizontal components (RotD50) calculated at periods of 0.2, 0.3, 0.5, 1.0, 2.0, 3.0, 5.0, 7.5, and 10.0 s. The results indicate that ground motions estimated at these periods using our hybrid approach based primarily on a teleseismically derived source model are comparable to the values observed for the 2014 Papanoa earthquake at regional distances. The approach could be used to estimate strong‐motion spectral levels expected for regions with limited local and regional recordings and could also fill in magnitude or distance gaps in ground‐motion prediction relations utilized in the assessment of seismic hazard.

Papanoa

Engineering and risk research—A strategic vision for extending USGS earthquake science to risk assessment and mitigation

As a part of the U.S. Geological Survey (USGS) Natural Hazards Mission Area, the Engineering and Risk Project (ERP) of the Geologic Hazards Science Center conducts civil engineering research to extend natural hazards science to risk assessments. The ERP includes predominantly, but not exclusively, staff funded by the USGS Earthquake Hazards Program. A major focus of the ERP is to deliver actionable information to decisionmakers that helps promote the safety, security, and economic well-being of the Nation. The report discusses briefly the ERP’s evolution and scope, its organization structure, describes key products and deliverables, their efforts to engage with external partners, and its strategy and vision in conducting range of engineering and risk research. The research topics outlined in this report, as developed by the ERP, may be used to facilitate project planning activities during the next 10 years and serve as a longer-term planning resource for the USGS Earthquake Hazards Program and Geologic Hazards Science Center.

Circular

Constraining landslide frequency across the United States to inform county-level risk reduction

Informative landslide hazard estimates are needed to support landslide mitigation strategies to reduce landslide risk across the United States. Whereas existing national-scale landslide susceptibility products assess where landslides are likely to occur, they do not address how often , which is a critical element of landslide hazard and risk assessments. In particular, the U.S. Federal Emergency Management Agency's National Risk Index (NRI) requires landslide frequency estimates to inform expected annual loss estimates. We present county-level landslide frequency (landslides per area per year) estimates for the 50 US states. We applied Bayesian negative binomial regression to estimate both the expected (average) reported landslide frequency and full distribution of annual landslide counts for each county. We compared a suite of models that used combinations of landslide-susceptible area, probability of potentially triggering earthquakes, frequency of potentially triggering precipitation, and ecological region as predictors. We trained our models with landslide inventory data from counties with the most comprehensive records available nationwide and used zero-inflated negative binomial distributions as an incompleteness model to correct for temporal reporting gaps. We selected a preferred frequency model to inform the NRI based on information criteria and physically plausible parameter estimates. The model showed that average annual reported landslide frequencies vary by 5 orders of magnitude across US counties, ranging from 0.002 (0.00015–0.05) landslides 1000 km −2 yr −1 in Kusilvak Census Area, Alaska, to 29 (19–46) landslides 1000 km −2 yr −1 in Lake County, California, reflecting the country's strong variations in landslide susceptibility, earthquake probability, and other factors for which ecological region serves as a proxy. Counties with estimated frequencies in the top 20 % of all counties are predominately along the West Coast of the continental United States, in mountainous regions of the Pacific Northwest and Intermountain West, in locally steep or earthquake-prone regions of the Midwest and Southeast, along the Appalachians, in southern and southeastern Alaska, and on some Hawaiian islands. By examining the number of landslides predicted in 99th percentile years for each county, we identified that 26 % of US counties likely have potential for widespread landsliding with more than 10 landslides 1000 km −2 yr −1 , even when such large events have not been reported in the training data for that county. Overall, our results better represent the range of possible landslide frequencies and spatial variations than previous national-scale estimates reported in the NRI, and our approach can inform other risk-reduction and loss-mitigation efforts across the United States and globally.

Natural Hazards and Earth System Sciences

Mineralization processes at Escanaba Trough

Escanaba Trough off northern California is the southernmost and only sediment covered segment of the Gorda Ridge. Hydrothermal mineralization was first discovered in Escanaba Trough in 1985, and subsequent investigations included the delineation of the NESCA (northern Escanaba) and SESCA (southern Escanaba) sections of Escanaba Trough, as well as drilling by Ocean Drilling Program (ODP) Leg 169 in 1996. Preliminary research conducted in the 1980s distinguished two classes of sulfide mineral assemblages within the Escanaba Trough: one dominated by pyrrhotite (Fe 1-x S) and one containing ‘mixed sulfides’ including chalcopyrite (CuFeS 2 ) and sphalerite (ZnS). In 2022, we conducted a research expedition to the Escanaba Trough to more thoroughly characterize mineralization processes and consider preservation of precipitated minerals throughout hydrothermally active and inactive sections of Escanaba Trough, with the specific objective of characterizing the host minerals, and processes of enrichment for specific elements which are currently listed as critical elements and can also be toxic under certain conditions (Sb, As, Ba, Co, Ga, Ge, Te). The following will include initial results from that work.

California

Perspectives and insights gained from applying landscape ecological approaches to the Upper Mississippi riverscape

Advances in remote sensing, spatial data collection, hydraulic and geospatial models, and the maturation of landscape ecology during the early 2000s spurred the concept of rivers as landscapes or ‘riverscapes’. Since that time, the Upper Mississippi River Restoration (UMRR) Program - one of the world’s longest running large-river ecosystem restoration and monitoring programs - has applied landscape ecological principles to the Upper Mississippi River System (UMRS). I examine spatial patterns of aquatic nutrient concentrations, submersed aquatic vegetation, and fish and mussel communities, finding that within-river patterns are often patchy in nature, likely resulting from how nutrient processes and community traits interact with spatial variability in hydraulic exchange patterns. Local-scale patchy spatial patterns in the UMRS are embedded in system-scale longitudinal gradients and a hierarchical view of the river has provided a foundation for strategic river restoration planning. Key Words: Aquatic Habitat, hydraulic connectivity, patch, restoration, riverscape

BioScience

Distribution functions for statistics derived from bivariate normal and bivariate two-parameter log-normal populations

The distribution functions for statistics that may be used to assess the significance of differences between sample means, standard deviations, coefficients of skewness, and coefficients of variation are obtained by Monte Carlo experiments. The distributions are expressed as functions of sample size, cross correlation, and skewness. In general, the distributions are more sensitive to cross correlation than to skewness. As sample size increases, however, the distributions tend to become more sensitive to skewness.

Open-File Report

A global database of soil microbial phospholipid fatty acids and enzyme activities

Soil microbes drive ecosystem function and play a critical role in how ecosystems respond to global change. Research surrounding soil microbial communities has rapidly increased in recent decades, and substantial data relating to phospholipid fatty acids (PLFAs) and potential enzyme activity have been collected and analysed. However, studies have mostly been restricted to local and regional scales, and their accuracy and usefulness are limited by the extent of accessible data. Here we aim to improve data availability by collating a global database of soil PLFA and potential enzyme activity measurements from 12,258 georeferenced samples located across all continents, 5.1% of which have not previously been published. The database contains data relating to 113 PLFAs and 26 enzyme activities, and includes metadata such as sampling date, sample depth, and soil pH, total carbon, and total nitrogen. This database will help researchers in conducting both global- and local-scale studies to better understand soil microbial biomass and function.

Scientific Data

Factors influencing distribution of Coccidioides immitis in soil, Washington State, 2016

Coccidioides immitis and Coccidioides posadasii are causative agents of Valley fever, a serious fungal disease endemic to regions with hot, arid climate in the United States, Mexico, and Central and South America. The environmental niche of Coccidioide s spp. is not well defined, and it remains unknown whether these fungi are primarily associated with rodents or grow as saprotrophs in soil. To better understand the environmental reservoir of these pathogens, we used a systematic soil sampling approach, quantitative PCR (qPCR), culture, whole-genome sequencing, and soil chemical analysis to identify factors associated with the presence of C. immitis at a known colonization site in Washington State linked to a human case in 2010. We found that the same strain colonized an area of over 46,000 m 2 and persisted in soil for over 6 years. No association with rodent burrows was observed, as C. immitis DNA was as likely to be detected inside rodent holes as it was in the surrounding soil. In addition, the presence of C. immitis DNA in soil was correlated with elevated levels of boron, calcium, magnesium, sodium, and silicon in soil leachates. We also observed differences in the microbial communities between C. immitis -positive and -negative soils. Our artificial soil inoculation experiments demonstrated that C. immitis can use soil as a sole source of nutrients. Taken together, these results suggest that soil parameters need to be considered when modeling the distribution of this fungus in the environment.

Washington