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At least 1,297 records · Page 72Linked to original sources

USGS2014

Geologic framework of thermal springs, Black Canyon, Nevada and Arizona

Thermal springs in Black Canyon of the Colorado River, downstream of Hoover Dam, are important recreational, ecological, and scenic features of the Lake Mead National Recreation Area. This report presents the results from a U.S. Geological Survey study of the geologic framework of the springs. The study was conducted in cooperation with the National Park Service and funded by both the National Park Service and National Cooperative Geologic Mapping Program of the U.S. Geological Survey. The report has two parts: A, a 1:48,000-scale geologic map created from existing geologic maps and augmented by new geologic mapping and geochronology; and B, an interpretive report that presents results based on a collection of fault kinematic data near springs within Black Canyon and construction of 1:100,000-scale geologic cross sections that extend across the western Lake Mead region. Exposures in Black Canyon are mostly of Miocene volcanic rocks, underlain by crystalline basement composed of Miocene plutonic rocks or Proterozoic metamorphic rocks. The rocks are variably tilted and highly faulted. Faults strike northwest to northeast and include normal and strike-slip faults. Spring discharge occurs along faults intruded by dacite dikes and plugs; weeping walls and seeps extend away from the faults in highly fractured rock or relatively porous volcanic breccias, or both. Results of kinematic analysis of fault data collected along tributaries to the Colorado River indicate two episodes of deformation, consistent with earlier studies. The earlier episode formed during east-northeast-directed extension, and the later during east-southeast-directed extension. At the northern end of the study area, pre-existing fault blocks that formed during the first episode were rotated counterclockwise along the left-lateral Lake Mead Fault System. The resulting fault pattern forms a complex arrangement that provides both barriers and pathways for groundwater movement within and around Black Canyon. Regional cross sections in this report show that thick Paleozoic carbonate aquifer rocks of east-central Nevada do not extend into the Black Canyon area and generally are terminated to the south at a major tectonic boundary defined by the northeast-striking Lake Mead Fault System and the northwest-striking Las Vegas Valley shear zone. Faults to the west of Black Canyon strike dominantly north-south and form a complicated pattern that may inhibit easterly groundwater movement from Eldorado Valley. To the east of Black Canyon, crystalline Proterozoic rocks locally overlain by Tertiary volcanic rocks in the Black Mountains are bounded by steep north-south normal faults. These faults may also inhibit westerly groundwater movement from Detrital Valley toward Black Canyon. Finally, the cross sections show clearly that Proterozoic basement rocks and (or) Tertiary plutonic rocks are shallow in the Black Canyon area (at the surface to a few hundred meters depth) and are cut by several major faults that discharge most of the springs in the Black Canyon. Therefore, the faults most likely provide groundwater pathways to sufficient depths that the groundwater is heated to the observed temperatures of up to 55 °C.

Arizona, Nevada↗

USGS2010

Simultaneous modeling of habitat suitability, occupancy, and relative abundance: African elephants in Zimbabwe

The recent development of statistical models such as dynamic site occupancy models provides the opportunity to address fairly complex management and conservation problems with relatively simple models. However, surprisingly few empirical studies have simultaneously modeled habitat suitability and occupancy status of organisms over large landscapes for management purposes. Joint modeling of these components is particularly important in the context of management of wild populations, as it provides a more coherent framework to investigate the population dynamics of organisms in space and time for the application of management decision tools. We applied such an approach to the study of water hole use by African elephants in Hwange National Park, Zimbabwe. Here we show how such methodology may be implemented and derive estimates of annual transition probabilities among three dry-season states for water holes: (1) unsuitable state (dry water holes with no elephants); (2) suitable state (water hole with water) with low abundance of elephants; and (3) suitable state with high abundance of elephants. We found that annual rainfall and the number of neighboring water holes influenced the transition probabilities among these three states. Because of an increase in elephant densities in the park during the study period, we also found that transition probabilities from low abundance to high abundance states increased over time. The application of the joint habitat–occupancy models provides a coherent framework to examine how habitat suitability and factors that affect habitat suitability influence the distribution and abundance of organisms. We discuss how these simple models can further be used to apply structured decision-making tools in order to derive decisions that are optimal relative to specified management objectives. The modeling framework presented in this paper should be applicable to a wide range of existing data sets and should help to address important ecological, conservation, and management problems that deal with occupancy, relative abundance, and habitat suitability.

Hwange National Park↗

USGS2001

Food webs including parasites, biomass, body sizes, and life stages for three California/Baja California estuaries

This data set presents food webs for three North American Pacific coast estuaries and a “Metaweb” composed of the species/stages compiled from all three estuaries. The webs have four noteworthy attributes: (1) parasites (infectious agents), (2) body-size information, (3) biomass information, and (4) ontogenetic stages of many animals with complex life cycles. The estuaries are Carpinteria Salt Marsh, California (CSM); Estero de Punta Banda, Baja California (EPB); and Bahía Falsa in Bahía San Quintín, Baja California (BSQ). Most data on species assemblages and parasitism were gathered via consistent sampling that acquired body size and biomass information for plants and animals larger than ∼1 mm, and for many infectious agents (mostly metazoan parasites, but also some microbes). We augmented this with information from additional published sources and by sampling unrepresented groups (e.g., plankton). We estimated free-living consumer–resource links primarily by extending a previously published version of the CSM web (which the current CSM web supplants) and determined most parasite consumer–resource links from direct observation. We recognize 21 possible link types including four general interactions: predators consuming prey, parasites consuming hosts, predators consuming parasites, and parasites consuming parasites. While generally resolved to the species level, we report stage-specific nodes for many animals with complex life cycles. We include additional biological information for each node, such as taxonomy, lifestyle (free-living, infectious, commensal, mutualist), mobility, and residency. The Metaweb includes 500 nodes, 314 species, and 11 270 links projected to be present given appropriate species' co-occurrences. Of these, 9247 links were present in one or more of the estuarine webs. The remaining 2023 links were not present in the estuaries but are included here because they may occur in other places or times. Initial analyses have examined and are examining the interrelationships among consumer strategy, body size, abundance, biomass, trophic level, life stages, and food-web structure and dynamics. Further use of these data may enable a more general exploration how infectious processes and parasites impact communities and ecosystems. Additionally, we present the data and metadata in a standardized format, attempting to provide a system-neutral template for future food-web assembly and publication.

Ecology↗

USGS1999

DNA repair and resistance to UV-B radiation in western spotted frogs

We assessed DNA repair and resistance to solar radiation in eggs of members of the western spotted frog complex ( Rana pretiosa and R. luteiventris ), species whose populations are suffering severe range reductions and declines. Specifically, we measured the activity of photoreactivating enzyme (photolyase) in oocytes of spotted frogs. In some species, photoreactivation is the most important mechanism for repair of UV-damaged DNA. Using field experiments, we also compared the hatching success of spotted frog embryos at natural oviposition sites at three elevations, where some embryos were subjected to ambient levels of UV-B radiation and others were shielded from UV-B radiation. Compared with other amphibians, photolyase activities in spotted frogs were relatively high. At all sites, hatching success was unaffected by UV-B. Our data support the interpretation that amphibian embryos with relatively high levels of photolyase are more resistant to UV-B radiation than those with lower levels of photolyase. At the embryonic stage, UV-B radiation does not presently seem to be contributing to the population declines of spotted frogs.

Ecological Applications↗

USGS2025

Similar population dynamics before and after a chytridiomycosis outbreak in a tropical riparian amphibian species

Emerging infectious diseases can cause rapid, widespread host mortality, and the lack of demographic data before and after pathogen emergence complicates understanding mechanisms of host persistence. This challenge is further compounded by environmental conditions that influence host behavior, while driving pathogen growth and virulence. These interactions create complex disease outcomes that hinder predictions of when and how hosts endure pathogen outbreaks. Here, we analyzed 10 years of capture-mark-recapture data (2000–2014) spanning wet and dry seasons for male Espadarana prosoblepon in El Copé, Panama, encompassing a period before (2000–2004) and after (2010–2014) a Batrachochytrium dendrobatidis ( Bd ) outbreak using Jolly-Seber models. We found that post- Bd male E. prosoblepon population size (range in mean population size among primary periods = 136–225 individuals) was similar to pre- Bd population size (range in mean population size among primary periods = 201–242 individuals). Pre- Bd , average monthly survival probability in the wet season was 0.93 (95% credible interval [CI] = 0.90–0.96). Post- Bd , uninfected individuals had survival probability higher in the wet season (mean = 0.97; [95% CI = 0.95–0.98]) than the dry season (mean = 0.90 [95% CI = 0.84–0.94]), while survival probability for infected individuals decreased as a function of Bd infection intensity. Pre- Bd , mean monthly per-capita entry probability was 0.07 (95% CI = 0.05–0.10), and post- Bd , mean monthly per-capita entry probability was 0.06 (95% CI = 0.00–0.10). Lastly, infection probability during the wet season was lower (mean = 0.04 [95% CI = 0.03–0.05]) than the dry season (mean = 0.10 [95% CI = 0.05–0.15]), and recovery probability during the wet season was lower (mean = 0.19 [95% CI = 0.11–0.28]) than the dry season (mean = 0.54 [95% CI = 0.20–0.88]). Our findings suggest that survival probabilities of uninfected individuals, as well as per-capita entry probabilities, are similar pre- and post- Bd , leading to a stable and similar sized pre- Bd population. These results contribute to understanding disease dynamics and tropical amphibian ecology.

Ecosphere↗

USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗

USGS2002

The lizard fauna of Guam's fringing islets: Island biogeography, phylogenetic history, and conservation implications

We sampled the lizard fauna of twenty-two small islets fringing the Pacific island of Guam and used these data to shed light on the processes responsible for present-day diversity. Habitat diversity, measured by islet area and vegetation complexity, was significantly correlated with the number of species found on an islet. However, islet distance and elevation were not significant predictors of diversity. Distribution patterns were slightly different for the two major families in our sample, Scincidae and Gekkonidae: skinks needed larger islets to maintain a population than did geckos. Presence/absence patterns were highly and significantly nested, and population density was correlated with the number of islets on which a species was found. An area cladogram was poorly supported and showed no faunal similarity between nearby islands. These patterns indicate that extinctions on most islets were due mostly to non-catastrophic, long-acting biological causes. The presence on the islets of species extirpated on Guam and the lack of significant nestedness on islands with greater maximum elevation highlight the impact that predators (primarily brown treesnakes) can have. Our findings also show that small reserves will not suffice to protect endangered lizard faunas, and that the islets may serve as a short-term repository of such species until snake-free areas can be established on Guam.

Global Ecology and Biogeography Letters↗

USGS2022

Mapping first to final uses for rare earth elements, globally and in the United States

Estimating the material flows of rare earth elements (REEs) is essential to understanding which industries are most vulnerable to potential REE supply disruptions which, in turn, may inform policy recommendations aimed at reducing the supply risk. However, the REEs are a group of mineral commodities characterized by highly uncertain estimates of supply and demand due to the REE market's complexity, opacity, and small size. In this study, a streamlined methodology was applied to map mineral commodity first-use to final-use applications and to estimate total requirements at the national level based on available industrial data for final-use finished goods. This analysis examines REEs both as a group and individually, showing that total US requirements are between 15% and 16.5% of world requirements for the year 2015, the latest year with the most complete information available. The findings shed light on US industrial capabilities by revealing the discrepancy between the types of REEs that go into US raw material consumption and those that are contained in embedded consumption. For instance, given the United States’ large oil refining industry, US raw material consumption of lanthanum is quite high. In contrast, US raw material consumption of neodymium is relatively low, whereas embedded demand is comparatively high. This reflects the lack of industrial capacity to process REE concentrates into magnet material combined with the US's high imports of products that contain rare earth permanent magnets.

Journal of Industrial Ecology↗

USGS2010

Occam's shadow: levels of analysis in evolutionary ecology - where to next?

Evolutionary ecology is the study of evolutionary processes, and the ecological conditions that influence them. A fundamental paradigm underlying the study of evolution is natural selection. Although there are a variety of operational definitions for natural selection in the literature, perhaps the most general one is that which characterizes selection as the process whereby heritable variation in fitness associated with variation in one or more phenotypic traits leads to intergenerational change in the frequency distribution of those traits. The past 20 years have witnessed a marked increase in the precision and reliability of our ability to estimate one or more components of fitness and characterize natural selection in wild populations, owing particularly to significant advances in methods for analysis of data from marked individuals. In this paper, we focus on several issues that we believe are important considerations for the application and development of these methods in the context of addressing questions in evolutionary ecology. First, our traditional approach to estimation often rests upon analysis of aggregates of individuals, which in the wild may reflect increasingly non-random (selected) samples with respect to the trait(s) of interest. In some cases, analysis at the aggregate level, rather than the individual level, may obscure important patterns. While there are a growing number of analytical tools available to estimate parameters at the individual level, and which can cope (to varying degrees) with progressive selection of the sample, the advent of new methods does not reduce the need to consider carefully the appropriate level of analysis in the first place. Estimation should be motivated a priori by strong theoretical analysis. Doing so provides clear guidance, in terms of both (i) assisting in the identification of realistic and meaningful models to include in the candidate model set, and (ii) providing the appropriate context under which the results are interpreted. Second, while it is true that selection (as defined) operates at the level of the individual, the selection gradient is often (if not generally) conditional on the abundance of the population. As such, it may be important to consider estimating transition rates conditional on both the parameter values of the other individuals in the population (or at least their distribution), and population abundance. This will undoubtedly pose a considerable challenge, for both single- and multi-strata applications. It will also require renewed consideration of the estimation of abundance, especially for open populations. Thirdly, selection typically operates on dynamic, individually varying traits. Such estimation may require characterizing fitness in terms of individual plasticity in one or more state variables, constituting analysis of the norms of reaction of individuals to variable environments. This can be quite complex, especially for traits that are under facultative control. Recent work has indicated that the pattern of selection on such traits is conditional on the relative rates of movement among and frequency of spatially heterogeneous habitats, suggesting analyses of evolution of life histories in open populations can be misleading in some cases.

Journal of Applied Statistics↗

USGS2021

Long-term multidecadal data from a prairie-pothole wetland complex reveal controls on aquatic-macroinvertebrate communities

Interactions between climate and hydrogeologic settings contribute to the hydrologic and chemical variability among depressional wetlands, which influences their aquatic communities. These interactions and resulting variability have led to inconsistent results in terms of identifying reliable predictors of aquatic-macroinvertebrate community composition for depressional wetlands. This is especially true in the Prairie Pothole Region of North America where, in addition to pronounced climate variability, studies are often confounded by fish introductions. We used environmental monitoring data collected over a 24-year period from a complex of sixteen depressional wetlands and structural equation modeling techniques that incorporated theoretical and empirical relationships outlined in the Wetland Continuum to identify key environmental (climate and hydrogeologic setting) and biotic (competition and predation) drivers of aquatic-macroinvertebrate community composition for prairie-pothole wetlands. Uplands in the study area were primarily native prairie, thus, embedded wetlands were impacted minimally by agricultural influences. Additionally, study wetlands were predominately fishless. In the absence of the overwhelming influence of fishes, major drivers influencing aquatic-macroinvertebrate communities were revealed through the use of data spanning multidecadal-long climate cycles. We found variables related to the placement of wetlands along axes of the Wetland Continuum, e.g., hydrogeologic setting (relative wetland elevation) and hydroclimatic setting (proportion of wetland ponded), to be influential drivers of within-wetland habitat characteristics, such as the proportion of open-water area, which in turn was the strongest predictor of macroinvertebrate community composition. In contrast, predatory invertebrate and salamander abundance and non-predatory invertebrate biomass (i.e., predation and competition) were found to have minimal influence on community composition.

North Dakota↗

USGS2009

Complex influences of low-head dams and artificial wetlands on fishes in a Colorado River tributary system

Low-head dams in arid regions restrict fish movement and create novel habitats that have complex effects on fish assemblages. The influence of low-head dams and artificial wetlands on fishes in Muddy Creek, a tributary of the Colorado River system in the USA was examined. Upstream, fish assemblages were dominated by native species including two species of conservation concern, bluehead sucker, Catostomus discobolus Cope, and roundtail chub, Gila robusta Baird and Girard. The artificial wetlands contained almost exclusively non-native fathead minnow, Pimephales promelas Rafinesque, and white sucker, Catostomus commersonii (Lacep??de). Downstream, fish assemblages were dominated by non-native species. Upstream spawning migrations by non-native white suckers were blocked by dams associated with the wetlands. However, the wetlands do not provide habitat for native fishes and likely inhibit fish movement. The wetlands appear to be a source habitat for non-native fishes and a sink habitat for native fishes. Two non-native species, sand shiner, Notropis stramineus (Cope), and redside shiner, Richardsonius balteatus (Richardson), were present only downstream of the wetlands, suggesting a beneficial role of the wetlands in preventing upstream colonisation by non-native fishes. ?? 2009 Blackwell Publishing Ltd.

Fisheries Management and Ecology↗

USGS1975

Relation of water level and fish availability to wood stork reproduction in the southern Everglades, Florida

The wood stork is a species of colonial wading bird in the Everglades that is most sensitive to changes in the availability of food. Previous studies have shown that the initiation and success of wood stork nesting depends on high densities of fish concentrated in ponds and other catchment basins during the dry season. The extreme dependence of the wood stork on the cyclic hydrologic regime of the southern Florida wetlands makes it an indicator of the well-being and ecological stability of the Everglades. The wood stork has declined in numbers over the last 25 years. One reason for the decline in wood stork population was the change in the hydrologic regimen of the Everglades which affected the feeding habitat and the food production. The fish on which the wood stork feeds increase in density during the dry season as water levels fall. In the Everglades marsh, densities were highest in front of the drying edge of surface water at a depth of about 0.3 m. Dry-season densities were greatest when a drought occurred the previous year. Historically wood stork nesting success was associated with high summer water levels, high rates of surface-water discharge and high rates of drying. Before the closure of the south side of Conservation Area 3 in 1962, years of successful and unsuccessful nesting were characterized by different patterns of drying. These patterns changed after 1962 and generally the predictability of successful nesting breaks down thereafter. Only two nesting years after 1962 were successful and in only one of these was the drying rate similar to years of successful nesting before 1962. Two other potentially successful years failed after 1962. This suggests that further changes in the hydrobiological relations occurred within the Everglades after 1962. Lack of successful nesting after 1962 can be attributed in large part to late colony formation and the interruption of nesting by winter rainfall. In this period (1962-72), colonies formed earlier in years of high early drying rates than in years of low early drying rates. Delay of colony formation is ultimately the result of inability to attain a suitable nutritional state since food supply is the primary factor in the initiation of nesting. Many of the complex food associations of the wood stork remain to be explained.

Florida↗

USGS2017

A life cycle database for parasitic acanthocephalans, cestodes, and nematodes

Parasitologists have worked out many complex life cycles over the last ~150 years, yet there have been few efforts to synthesize this information to facilitate comparisons among taxa. Most existing host-parasite databases focus on particular host taxa, do not distinguish final from intermediate hosts, and lack parasite life-history information. We summarized the known life cycles of trophically transmitted parasitic acanthocephalans, cestodes, and nematodes. For 973 parasite species, we gathered information from the literature on the hosts infected at each stage of the parasite life cycle (8510 host-parasite species associations), what parasite stage is in each host, and whether parasites need to infect certain hosts to complete the life cycle. We also collected life-history data for these parasites at each life cycle stage, including 2313 development time measurements and 7660 body size measurements. The result is the most comprehensive data summary available for these parasite taxa. In addition to identifying gaps in our knowledge of parasite life cycles, these data can be used to test hypotheses about life cycle evolution, host specificity, parasite life-history strategies, and the roles of parasites in food webs.

Ecology↗

USGS2018

Population genomic analysis suggests strong influence of river network on spatial distribution of genetic variation in invasive saltcedar across the southwestern United States

Understanding the complex influences of landscape and anthropogenic elements that shape the population genetic structure of invasive species provides insight into patterns of colonization and spread. The application of landscape genomics techniques to these questions may offer detailed, previously undocumented insights into factors influencing species invasions. We investigated the spatial pattern of genetic variation and the influences of landscape factors on population similarity in an invasive riparian shrub, saltcedar ( Tamarix L.) by analysing 1,997 genomewide SNP markers for 259 individuals from 25 populations collected throughout the southwestern United States. Our results revealed a broad-scale spatial genetic differentiation of saltcedar populations between the Colorado and Rio Grande river basins and identified potential barriers to population similarity along both river systems. River pathways most strongly contributed to population similarity. In contrast, low temperature and dams likely served as barriers to population similarity. We hypothesize that large-scale geographic patterns in genetic diversity resulted from a combination of early introductions from distinct populations, the subsequent influence of natural selection, dispersal barriers and founder effects during range expansion.

Molecular Ecology↗

USGS2022

Integrating principles and tools of decision science into value-driven watershed planning for compensatory mitigation

Several environmental policies strive to restore impaired ecosystems and could benefit from a consistent and transparent process — co-developed with key stakeholders — to prioritize impaired ecosystems for restoration activities. The Clean Water Act, for example, establishes reallocation mechanisms to transfer ecosystem services from sites of disturbance to compensation sites to offset aquatic resource functions that are unavoidably lost through land development. However, planning for the prioritization of compensatory mitigation areas is often hampered by decision-making processes that fall into a myopic decision frame because they are not co-produced with stakeholders. In this study, we partnered with domain experts from the North Carolina Division of Mitigation Services (NCDMS) to co-develop a real-world decision framework to prioritize catchments by potential for the development of mitigation projects following principles of a structured decision-making process and knowledge co-production. Following an iterative decision analysis cycle, domain experts revised foundational components of the decision framework and progressively added complexity and realism as they gained additional insights or more information became available. Through the course of facilitated in-person and remote interactions, the co-development of a decision framework produced three main ‘breakthroughs’ from the perspective of the stakeholder group: a) recognition of the problem as a multi-objective decision driven by several values in addition to biogeophysical goals (e.g., functional uplift; restoring or enhancing lost functionality of ecosystems), b) that the decision comprises a linked and sequential planning-to-implementation process, and c) future risk associated with land-use and climate change must be considered. We also present an interactive tool for ‘on-the-fly’ assessment of alternatives and tradeoff analysis, allowing domain experts to quickly test, react to, and revise prioritization strategies. The decision framework described in this study is not limited to the prioritization of compensatory mitigation activities across North Carolina, but rather serves as a framework to prioritize a wide range of restoration, conservation, and resource allocation activities in similar environmental contexts across the nation.

Ecological Applications↗

USGS2015

Assessing accuracy and precision for field and laboratory data: a perspective in ecosystem restoration

Unlike most laboratory studies, rigorous quality assurance/quality control (QA/QC) procedures may be lacking in ecosystem restoration (“ecorestoration”) projects, despite legislative mandates in the United States. This is due, in part, to ecorestoration specialists making the false assumption that some types of data (e.g. discrete variables such as species identification and abundance classes) are not subject to evaluations of data quality. Moreover, emergent behavior manifested by complex, adapting, and nonlinear organizations responsible for monitoring the success of ecorestoration projects tend to unconsciously minimize disorder, QA/QC being an activity perceived as creating disorder. We discuss similarities and differences in assessing precision and accuracy for field and laboratory data. Although the concepts for assessing precision and accuracy of ecorestoration field data are conceptually the same as laboratory data, the manner in which these data quality attributes are assessed is different. From a sample analysis perspective, a field crew is comparable to a laboratory instrument that requires regular “recalibration,” with results obtained by experts at the same plot treated as laboratory calibration standards. Unlike laboratory standards and reference materials, the “true” value for many field variables is commonly unknown. In the laboratory, specific QA/QC samples assess error for each aspect of the measurement process, whereas field revisits assess precision and accuracy of the entire data collection process following initial calibration. Rigorous QA/QC data in an ecorestoration project are essential for evaluating the success of a project, and they provide the only objective “legacy” of the dataset for potential legal challenges and future uses.

Restoration Ecology↗

USGS2019

Bats in a changing landscape: Linking occupancy and traits of a diverse montane bat community to fire regime

1. Wildfires are increasing in incidence and severity across the western US, leading to changes in forest structure and wildlife habitats. Knowledge of how species respond to fire-driven habitat changes in these landscapes is limited and generally disconnected from our understanding of adaptations that underpin responses to fire. 2. We aimed to identify relationships between fire regime, physiographic and forest structure variables, and occupancy and functional traits of a diverse bat community, to inform forest management in a fire-prone landscape. 3. We recorded bats acoustically at 83 sites (n = 249 recording nights) across the Plumas National Forest in the northern Sierra Nevada over 3 summers (2015-2017). We investigated relationships between fire regime, physiographic and forest structure and probability of bat occupancy for 9 species. We used fourth corner regression and RLQ analysis to identify ecomorphological traits (body mass; call frequency, bandwidth and duration; and open, edge or clutter (structurally complex vegetation) adapted foraging strategy) driving species-environment relationships across all 17 bat species. 4. Relationships between bat traits and fire regime were driven by adaptations to diverse forest structure. Bats adapted to foraging in open habitats and emitting longer duration and narrow bandwidth calls were associated with higher severity and more frequent fires, and bats adapted to foraging in a more cluttered environment were negatively associated with fire. Relationships between edge-adapted bat species and fire were driven by prey preference or habitat availability and configuration at a landscape scale. 5. Predicted increases in fire frequency and severity in the western US are likely to shift dominance in the bat community to species adapted to open environments and those able to exploit post-fire resource pulses (aquatic insects, beetles, snags). Managing for pyrodiversity within the western US is likely important for maintaining bat community diversity, as well as diversity of other biotic communities. Identifying trait-fire regime relationships will help forest managers develop appropriate management interventions and focus limited resources to provide for a broad range of species.

Ecology and Evolution↗

USGS2016

Influence of glacier runoff on ecosystem structure in Gulf of Alaska fjords

To better understand the influence of glacier runoff on fjord ecosystems, we sampled oceanographic conditions, nutrients, zooplankton, forage fish and seabirds within 4 fjords in coastal areas of the Gulf Alaska. We used generalized additive models and geostatistics to identify the range of glacier runoff influence into coastal waters within fjords of varying estuarine influence and topographic complexity. We also modeled the response of depth-integrated chlorophyll a concentration, copepod biomass, fish and seabird abundance to physical, nutrient and biotic predictor variables. The effects of glacial runoff were traced at least 10 km into coastal fjords by cold, turbid, stratified and generally nutrient-rich near-surface conditions. Glacially modified physical gradients, nutrient availability and among-fjord differences explained 67% of the variation in phytoplankton abundance, which is a driver of ecosystem structure at higher trophic levels. Copepod, euphausiid, fish and seabird distribution and abundance were related to environmental gradients that could be traced to glacial freshwater input, particularly turbidity and temperature. Seabird density was predicted by prey availability and silicate concentrations, which may be a proxy for upwelling areas where this nutrient is in excess. Similarities in ecosystem structure among fjords were attributable to an influx of cold, fresh and sediment-laden water, whereas differences were likely related to fjord topography and local differences in estuarine vs. ocean influence. We anticipate that continued changes in the timing and volume of glacial runoff will ultimately alter coastal ecosystems in the future.

Alaska↗