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USGS2023

Seed dispersal and tree legacies influence spatial patterns of plant invasion dynamics

Invasive plant species alter community dynamics and ecosystem properties, potentially leading to regime shifts. Here, the invasion of a non-native tree species into a stand of native tree species is simulated using an agent-based model. The model describes an invasive tree with fast growth and high seed production that produces litter with a suppressive effect on native seedlings, based loosely on Melaleuca quinquenervia , invasive to southern Florida. The effect of a biocontrol agent, which reduces the invasive tree's growth and reproductive rates, is included to study how effective biocontrol is in facilitating the recovery of native trees. Even under biocontrol, the invader has some advantages over native tree species, such as the ability to tolerate higher stem densities than the invaded species and its litter's seedling suppression effect. We also include a standing dead component of both species, where light interception from dead canopy trees influences neighboring tree demographics. The model is applied to two questions. The first is how the mean seedling dispersal rate affects the spread of the invading species into a pure stand of natives, assuming the same mean dispersal distance for both species. For assumed litter seedling suppression that roughly balances the fitness levels of the two species, which species dominates depends on the mean dispersal distance. The invader dominates at both very high and very low mean seedling dispersal distances, while the native tree dominates for dispersal distances in the intermediate range. The second question is how standing dead trees affect either the rate of spread of the invader or the rate of recovery of the native species. The legacy of standing dead invasive trees may delay the recovery of native vegetation. The results here are novel and show that agent-based modeling is essential in illustrating how the fine-scale modeling of local interactions of trees leads to effects at the population level.

Frontiers in Applied Mathematics and Statistics↗

USGS2005

Selecting a distributional assumption for modelling relative densities of benthic macroinvertebrates

The selection of a distributional assumption suitable for modelling macroinvertebrate density data is typically challenging. Macroinvertebrate data often exhibit substantially larger variances than expected under a standard count assumption, that of the Poisson distribution. Such overdispersion may derive from multiple sources, including heterogeneity of habitat (historically and spatially), differing life histories for organisms collected within a single collection in space and time, and autocorrelation. Taken to extreme, heterogeneity of habitat may be argued to explain the frequent large proportions of zero observations in macroinvertebrate data. Sampling locations may consist of habitats defined qualitatively as either suitable or unsuitable. The former category may yield random or stochastic zeroes and the latter structural zeroes. Heterogeneity among counts may be accommodated by treating the count mean itself as a random variable, while extra zeroes may be accommodated using zero-modified count assumptions, including zero-inflated and two-stage (or hurdle) approaches. These and linear assumptions (following log- and square root-transformations) were evaluated using 9 years of mayfly density data from a 52 km, ninth-order reach of the Upper Mississippi River (n = 959). The data exhibited substantial overdispersion relative to that expected under a Poisson assumption (i.e. variance:mean ratio = 23 ??? 1), and 43% of the sampling locations yielded zero mayflies. Based on the Akaike Information Criterion (AIC), count models were improved most by treating the count mean as a random variable (via a Poisson-gamma distributional assumption) and secondarily by zero modification (i.e. improvements in AIC values = 9184 units and 47-48 units, respectively). Zeroes were underestimated by the Poisson, log-transform and square root-transform models, slightly by the standard negative binomial model but not by the zero-modified models (61%, 24%, 32%, 7%, and 0%, respectively). However, the zero-modified Poisson models underestimated small counts (1 ??? y ??? 4) and overestimated intermediate counts (7 ??? y ??? 23). Counts greater than zero were estimated well by zero-modified negative binomial models, while counts greater than one were also estimated well by the standard negative binomial model. Based on AIC and percent zero estimation criteria, the two-stage and zero-inflated models performed similarly. The above inferences were largely confirmed when the models were used to predict values from a separate, evaluation data set (n = 110). An exception was that, using the evaluation data set, the standard negative binomial model appeared superior to its zero-modified counterparts using the AIC (but not percent zero criteria). This and other evidence suggest that a negative binomial distributional assumption should be routinely considered when modelling benthic macroinvertebrate data from low flow environments. Whether negative binomial models should themselves be routinely examined for extra zeroes requires, from a statistical perspective, more investigation. However, this question may best be answered by ecological arguments that may be specific to the sampled species and locations. ?? 2004 Elsevier B.V. All rights reserved.

Ecological Modelling↗

USGS2010

Development of a channel classification to evaluate potential for cottonwood restoration, lower segments of the Middle Missouri River, South Dakota and Nebraska

This report documents development of a spatially explicit river and flood-plain classification to evaluate potential for cottonwood restoration along the Sharpe and Fort Randall segments of the Middle Missouri River. This project involved evaluating existing topographic, water-surface elevation, and soils data to determine if they were sufficient to create a classification similar to the Land Capability Potential Index (LCPI) developed by Jacobson and others (U.S. Geological Survey Scientific Investigations Report 2007–5256) and developing a geomorphically based classification to apply to evaluating restoration potential. Existing topographic, water-surface elevation, and soils data for the Middle Missouri River were not sufficient to replicate the LCPI. The 1/3-arc-second National Elevation Dataset delineated most of the topographic complexity and produced cumulative frequency distributions similar to a high-resolution 5-meter topographic dataset developed for the Lower Missouri River. However, lack of bathymetry in the National Elevation Dataset produces a potentially critical bias in evaluation of frequently flooded surfaces close to the river. High-resolution soils data alone were insufficient to replace the information content of the LCPI. In test reaches in the Lower Missouri River, soil drainage classes from the Soil Survey Geographic Database database correctly classified 0.8–98.9 percent of the flood-plain area at or below the 5-year return interval flood stage depending on state of channel incision; on average for river miles 423–811, soil drainage class correctly classified only 30.2 percent of the flood-plain area at or below the 5-year return interval flood stage. Lack of congruence between soil characteristics and present-day hydrology results from relatively rapid incision and aggradation of segments of the Missouri River resulting from impoundments and engineering. The most sparsely available data in the Middle Missouri River were water-surface elevations. Whereas hydraulically modeled water-surface elevations were available at 1.6-kilometer intervals in the Lower Missouri River, water-surface elevations in the Middle Missouri River had to be interpolated between streamflow-gaging stations spaced 3–116 kilometers. Lack of high-resolution water-surface elevation data precludes development of LCPI-like classification maps. An hierarchical river classification framework is proposed to provide structure for a multiscale river classification. The segment-scale classification presented in this report is deductive and based on presumed effects of dams, significant tributaries, and geological (and engineered) channel constraints. An inductive reach-scale classification, nested within the segment scale, is based on multivariate statistical clustering of geomorphic data collected at 500-meter intervals along the river. Cluster-based classifications delineate reaches of the river with similar channel and flood-plain geomorphology, and presumably, similar geomorphic and hydrologic processes. The dominant variables in the clustering process were channel width (Fort Randall) and valley width (Sharpe), followed by braiding index (both segments). Clusters with multithread and highly sinuous channels are likely to be associated with dynamic channel migration and deposition of fresh, bare sediment conducive to natural cottonwood germination. However, restoration potential within these reaches is likely to be mitigated by interaction of cottonwood life stages with the highly altered flow regime.

Scientific Investigations Report↗

USGS1995

Water-quality assessment of the Trinity River Basin, Texas— Analysis of available information on nutrients and suspended sediment, 1974-91

The U.S. Geological Survey is conducting an assessment of water quality in the Trinity River Basin as part of the National Water-Quality Assessment Program. During the planning phase of this study, existing information on nutrients and suspended sediment was compiled and analyzed. A total of about 5,700 water-quality samples were analyzed from local, State, and Federal agencies. Of these, about 4,200 were from streams and about 1,500 were from wells. Additionally, atmospheric deposition data for two locations were obtained and analyzed. Spatial variations in nutrient concentrations in streams are related primarily to point sources and reservoirs. Median total nitrogen concentrations downstream from major point sources, downstream from reservoirs, and on tributaries were 6.0, 1.3, and 2.4 milligrams per liter, respectively. Median total phosphorus concentrations for the same three settings were 1.6, O. 1, and 0.2 milligrams per liter, respectively. The largest concentrations occurred at low flow downstream from Dallas, Texas, when streamflow dominated by treated wastewater from point sources. The smallest concentrations occurred immediately downstream from reservoirs, which act as sinks for nutrients. Nutrient concentrations in agricultural areas were positively correlated to percent of drainage in agricultural land use and to discharge, indicating washoff of nutrients from nonpoint sources during storms. As with concentrations, nutrient loads were related to the presence of point sources and reservoirs. Loads increased substantially in the Dallas-Fort Worth area with the addition of nutrients from point sources; loads decreased substantially as flow passed through Livingston Reservoir. Concentrations of total nitrogen and total phosphorus did not change significantly, at the 95 percent confidence level, from 1974 to 1991 at most sites. The exception was a decrease in phosphorus concentrations at two sites downstream from major wastewater-treatment plants in the Dallas area. Concentrations of organic nitrogen and ammonia declined and concentrations of nitrite plus nitrate increased at sites below major wastewater-treatment plants. These changes are indicative of improvements in wastewater treatment that converts organic nitrogen and ammonia to nitrite and finally nitrate. Because nitrogen conversion reactions consume oxygen, the occurrence of these reactions at the treatment plants instead of in the streams resulted in reduced loading of biochemical oxygen demand to the streams. The only nutrient measured in ground water was nitrate. Nitrate concentrations varied by aquifer with the largest median concentrations in the Queen City and Nacatoch aquifers. There was a significant rank correlation between nitrate concentrations and depth of well for all seven aquifer groups sampled, with largest concentrations present in shallow wells. The large concentrations could result from nonpoint sources of nitrate associated with agricultural and urban land use; however, attempts to correlate nitrogen fertilizer application rates and agricultural land use to concentrations of nitrate in ground water were inconclusive. Only limited suspended-sediment data were available. Four sites had daily sediment-discharge records for three or more water years (October 1 to September 30) between 1974 and 1985. An additional three sites had periodic measurements of suspended-sediment concentrations. There are differences in concentrations and yields among sites; however, the limited amount of data precludes developing statistical or cause-and-effect relations with environmental factors such as land use, soil, and geology. Data are sufficient, and the relation is pronounced enough, to indicate trapping of suspended sediment by Livingston Reservoir.

Texas↗

USGS2005

Precipitation-runoff processes in the Feather River basin, northeastern California, and streamflow predictability, water years 1971-97

Precipitation-runoff processes in the Feather River Basin of northern California determine short- and long-term streamflow variations that are of considerable local, State, and Federal concern. The river is an important source of water and power for the region. The basin forms the headwaters of the California State Water Project. Lake Oroville, at the outlet of the basin, plays an important role in flood management, water quality, and the health of fisheries as far downstream as the Sacramento-San Joaquin Delta. Existing models of the river simulate streamflow in hourly, daily, weekly, and seasonal time steps, but cannot adequately describe responses to climate and land-use variations in the basin. New spatially detailed precipitation-runoff models of the basin have been developed to simulate responses to climate and land-use variations at a higher spatial resolution than was available previously. This report characterizes daily rainfall, snowpack evolution, runoff, water and energy balances, and streamflow variations from, and within, the basin above Lake Oroville. The new model's ability to predict streamflow is assessed. The Feather River Basin sits astride geologic, topographic, and climatic divides that establish a hydrologic character that is relatively unusual among the basins of the Sierra Nevada. It straddles a north-south geologic transition in the Sierra Nevada between the granitic bedrock that underlies and forms most of the central and southern Sierra Nevada and volcanic bedrock that underlies the northernmost parts of the range (and basin). Because volcanic bedrock generally is more permeable than granitic, the northern, volcanic parts of the basin contribute larger fractions of ground-water flow to streams than do the southern, granitic parts of the basin. The Sierra Nevada topographic divide forms a high altitude ridgeline running northwest to southeast through the middle of the basin. The topography east of this ridgeline is more like the rain-shadowed basins of the northeastern Sierra Nevada than the uplands of most western Sierra Nevada river basins. The climate is mediterranean, with most of the annual precipitation occurring in winter. Because the basin includes large areas that are near the average snowline, rainfall and rain-snow mixtures are common during winter storms. Consequently, the overall timing and rates of runoff from the basin are highly sensitive to winter temperature fluctuations. The models were developed to simulate runoff-generating processes in eight drainages of the Feather River Basin. Together, these models simulate streamflow from 98 percent of the basin above Lake Oroville. The models simulate daily water and heat balances, snowpack evolution and snowmelt, evaporation and transpiration, subsurface water storage and outflows, and streamflow to key streamflow gage sites. The drainages are modeled as 324 hydrologic-response units, each of which is assumed homogeneous in physical characteristics and response to precipitation and runoff. The models were calibrated with emphasis on reproducing monthly streamflow rates, and model simulations were compared to the total natural inflows into Lake Oroville as reconstructed by the California Department of Water Resources for April-July snowmelt seasons from 1971 to 1997. The models are most sensitive to input values and patterns of precipitation and soil characteristics. The input precipitation values were allowed to vary on a daily basis to reflect available observations by making daily transformations to an existing map of long-term mean monthly precipitation rates that account for altitude and rain-shadow effects. The models effectively simulate streamflow into Lake Oroville during water years (October through September) 1971-97, which is demonstrated in hydrographs and statistical results presented in this report.

Northeastern California↗

USGS2007

Water-quality characteristics for selected sites within the Milwaukee Metropolitan Sewerage District planning area, Wisconsin, February 2004-September 2005

The Milwaukee Metropolitan Sewerage District (MMSD) Corridor Study is a three-phase project designed to improve the understanding of water resources in the MMSD planning area to assist managers and policy makers in their decisions. Phase I of the Study involved the compilation of existing data from multiple agencies into a single database. These data were analyzed to identify spatial, temporal, and technological gaps in the planning area, and were used to develop Phase II of the Study. Phase II, the subject of this report, involved an intensive data-collection effort by the U.S. Geological Survey (USGS) in cooperation with MMSD (from February, 2004, through September, 2005). This phase addressed the data gaps identified in Phase I and completed a baseline assessment of water quality for selected stream and harbor sites in the MMSD planning area. This baseline assessment included evaluations of surface-water chemistry and microbial concentrations in the streams and harbor sites; additionally, stream sites were evaluated for discharge, sediment chemistry, fish-tissue chemistry, habitat, and the quality of biological communities (including fish, macroinvertebrates, and algae). In all, data were collected at 15 stream and 6 harbor sites within the MMSD planning area, including manual sampling and analysis for more than 220 water-quality properties and constituents at all 21 sites, stream-discharge data for 14 stream sites, and automated water-quality sampling at 4 stream sites. A bioassessment during autumn 2004 included collection of biologic-community data and stream-habitat data at wadeable streams. Quartiles of Phase II aggregate bioassessment rankings were used to divide the 14 wadeable stream sites into four groups to investigate relations between bioassessment data and site characteristic and water-quality data. Quartile numbers reflect relative water quality: quartile 1 contained sites where the bioassessment data indicated the least-degraded water quality among those sampled, and quartile 4 contained sites that indicated the most-degraded water quality. Quartiles contained the following stream sites: Quartile 1: Milwaukee River near Cedarburg, Milwaukee River at Milwaukee, Jewel Creek, and Menomonee River at Menomonee Falls; Quartile 2: Willow Creek, Root River near Franklin, and Root River at Grange Avenue; Quartile 3: Menomonee River at Wauwatosa, Oak Creek, and Little Menomonee River; and Quartile 4: Honey Creek, Underwood Creek, Lincoln Creek, and Kinnickinnic River. Site characteristics (in this case, drainage area and land use) and selected water-quality data were summarized based on the four bioassessment quartiles to determine if there were relations with the aggregate bioassessment rankings. In general, sites having the largest drainage basins with the lowest proportion of urban land use were in quartile 1, and the smallest drainage basins with the highest proportion of urban land use were in quartile 4. Major ions, indicator organisms, and wastewater compounds generally had the lowest overall results in quartile 1 and highest overall results in quartile 4, with intermediate results in quartiles 2 and 3. Results for other constituent types (nutrients, mercury, pathogenic organisms, and bed sediment) were mixed, with results for some constituents decreasing from quartile 1 to quartile 4. Where sufficient Phase I data were available, summary statistics (including medians) for chemical and biological data were calculated, allowing some comparisons to be made between Phase I and Phase II data. Comparisons between Phase I and Phase II results indicated a variety of changes with respect to water quality. Concentrations of chloride, nitrate, chlorophyll a, total phosphorus in water; arsenic in bed sediment; and fish Index of Biotic Integrity ratings generally indicated declines in water quality. However, concentrations of total nitrogen, suspended sediment, and fecal coliform in water; some trace eleme

Wisconsin↗

USGS2006

Occurrence, distribution, loads, and yields of selected pesticides in the Little River basin, Kentucky, 2003-04

Water resources in the Little River Basin are potentially vulnerable to applications of pesticides associated with both agricultural and nonagricultural activities, because much of the basin is characterized by karst topography. Concerns about water quality resulting from pesticide use in karst areas and lack of data on concentrations of pesticides in surface water led to further investigation of water quality in the Little River Basin, which includes about 600 square miles in Christian and Trigg Counties and a portion of Caldwell County in western Kentucky. Water samples were collected in streams in the Little River Basin, Kentucky during 2003-04 as part of a study conducted in cooperation with the Kentucky Department of Agriculture. The objectives of the study were to assess the occurrence and distribution of pesticides, to evaluate the spatial and seasonal variability of pesticides, and to evaluate loads and yields of selected pesticides in the basin. A total of 91 water samples was collected at 4 fixed-network sites from March through November 2003 and from February through November 2004. An additional 20 samples were collected at 5 synoptic-network sites within the same period. Twenty-four pesticides were detected of the 127 pesticides analyzed in the stream samples. Of the 24 detected pesticides, 15 were herbicides, 7 were insecticides, and 2 were fungicides. The most commonly detected pesticides-atrazine, simazine, metolachlor, and acetochlor-were those most heavily used on crops during the study. Atrazine and simazine were detected in 100 percent of all surface-water samples, and metolachlor and acetochlor were detected in more than 45 percent. The pesticide degradate, deethylatrazine, was detected in 100 percent of the samples. Only one nonagricultural herbicide, prometon, was detected in more than 50 percent of the samples. Diazinon, the most commonly detected insecticide, was found in 25 percent of all samples and was found at all sites except Casey Creek. Metalaxyl was the most commonly detected fungicide (14 percent); most detections were in samples from the Sinking Fork subbasin. Concentrations of herbicides were highest following application in the spring (March-May). In contrast, insecticides typically were present during the summer (June-August). The most commonly detected pesticides in the Little River Basin were found at low concentrations in streams year-round. Atrazine and simazine (row-crop herbicides) had the highest measured concentrations (22 and 6.1 micrograms per liter (?g/L), respectively) and were the most heavily applied herbicides in the basin. Metolachlor also was heavily applied in the basin, but measured concentrations did not exceed 0.32 ?g/L. The insecticide, Malathion, was only detected in 4 percent of the samples, although it was heavily applied in the basin during 2003-04. Most detections of pesticides were at low concentrations in relation to drinking-water standards and guidelines established for the protection of aquatic life. Only two pesticide compounds--atrazine and simazine--exceeded the U.S. Environmental Protection Agency (USEPA) standards for drinking water. Atrazine exceeded the USEPA's maximum contaminant level (MCL) 19 times in 111 detections; simazine exceeded the established MCL 2 times in 111 detections. These exceedences occurred in the spring. Concentrations of atrazine also exceeded the established aquatic-life criterion (1.8 ?g/L) in 32 samples collected from all sites. Concentrations of deethylatrazine, an herbicide-transformation compound, tended to follow the same monthly concentration pattern as its parent compound (atrazine), but concentrations of deethylatrazine were lower than those of atrazine. Atrazine may have been present in the soil much longer at these sites, which might have allowed microbial populations to transform atrazine into deethylatrazine. A statistical comparison of concentrations of selected pesticides among four fixed-network sites

Scientific Investigations Report↗

USGS2024

Using local monitoring results to inform the Chesapeake Bay Program’s Watershed Model

The Chesapeake Bay Program’s Watershed Model (CBWM) has been used as an accounting tool for the Chesapeake Bay Total Maximum Daily Load (TMDL). However, some of the fundamental parameters that underpin the watershed model may not represent local watershed characteristics at all scales. Significant investments have been made by state and local governments, and other local stakeholders, who are interested in validating loads and progress in implementing measures to achieve the pollutant reductions called for in the TMDL through local monitoring data. For the purposes of this STAC workshop, local monitoring is considered any relevant data collected by a local, regional, state, or federal organization that has not been used previously in the development, calibration, or validation of the CBWM. Some of these local monitoring efforts have been collecting data over the past 5-10 years, with some datasets extending back over more than two decades. However, the data and the CBWM are often not directly comparable due to differences in temporal and spatial scales or because the water quality parameters being monitored are not those estimated by the model. Therefore, a Scientific and Technical Advisory Committee (STAC) workshop was convened to bring together Chesapeake Bay Program (CBP) modelers, local and state government stakeholders, and scientists who are monitoring and analyzing local water quality data to recommend ways in which local monitoring data can be used to inform the CBWM, identify gaps between modeled and monitored data, and validate model predictions at the local scale. The workshop, “Using Local Monitoring Results to Inform the Chesapeake Bay Program’s Watershed Model”, was held in March 2023 to provide insight on the scope of local water quality monitoring efforts within and outside of the Bay watershed that could be used to inform the CBWM. Scientists and managers developed recommendations that could be used by modelers for either calibration or knowledge generation to inform the Phase 7 version of the CBWM currently under development for a 2027 decision by the CBP, recommendations for how local monitoring efforts could be designed or altered to better inform the CBWM, and recommendations for how monitored trends could be used in management. The preliminary presentations for the workshop provided essential background information on the CBWM and data used to parameterize it. This information was the foundation for discussions on existing data gaps, the importance of current local monitoring networks, and best practices for developing future monitoring networks. More information on this STAC-funded effort including workshop presentation slides and recordings can be accessed on the workshop webpage. Confidence in the loading estimates of the CBWM is critical because of its role as the accounting mechanism for measuring progress toward the Bay TMDL’s nutrient and sediment reduction goals. Those who are being asked or required to pay for these reductions, from state and local government managers to farmers, property owners and developers, must have confidence in the scientific validity of the CBWM’s loading estimates or trust in the restoration effort will dissipate. Toward that end, several local entities have invested in extensive urban, suburban, and agricultural monitoring programs to characterize nutrient and sediment loading (among other water quality parameters) at a relatively fine scale (from a few acres to 5 square miles). Monitoring networks outside of the Bay watershed were also included as their relevance and similarities to Bay watershed landscapes, hydrology, and climate conditions can help build the body of knowledge necessary for better parameterization of the CBWM. Local monitoring results could be analyzed for loads and trends for calibration of Phase 7, comparison against trends, informing the structure and parameterization of the model, and potentially in policy evaluation. The effectiveness of management practices at the small watershed scale is a primary question of watershed managers that could be addressed by local monitoring, but to do so study design and statistical techniques may need to be altered if these datasets are intended to inform parameterization of the Bay modeling tools. The partnership would benefit from the redesign of some existing monitoring programs so that they are hypothesis-driven, with fully described inputs, outputs, and practices. New statistical tools could be applied to evaluate the relative importance of various drivers affecting water quality and influenced by hydrogeologic setting and watershed condition.

Chesapeake Bay watershed↗

USGS1996

Concentrations and transport of atrazine in the Delaware River-Perry Lake system, northeast Kansas, July 1993 through September 1995

A study of the distribution and transport of atrazine in surface water in the 1,117 square-mile Delaware River Basin in northeast Kansas was conducted from July 1992 through September 1995. The purpose of this report is to present information to assess the present (1992-95) con ditions and possible future changes in the distri bution and magnitude of atrazine concentrations, loads, and yields spatially, temporally, and in rela tion to hydrologic conditions and land-use characteristics. A network of 11 stream-monitoring and sam-ple-collection sites was established within the basin. Stream-water samples were collected during a wide range of hydrologic conditions throughout the study. Nearly 5,000 samples were analyzed by enzyme-linked immunosorbent assay (ELISA) for triazine herbicide concentrations. Daily mean triazine herbicide concentrations were calculated for all sampling sites and subsequently used to estimate daily mean atrazine concentrations with a linear-regression relation between ELISA-derived triazine concentrations and atrazine concentrations determined by gas chromatography/mass spectrometry for 141 dual-analyzed surface-water samples. During May, June, and July, time-weighted, daily mean atrazine concentrations in streams in the Delaware River Basin commonly exceeded the value of the 3.0-μg/L (micrograms per liter) annual mean Maximum Contaminant Level (MCL) established by the U.S. Environmental Protection Agency for drinking-water supplies. Time-weighted, daily mean concentrations equal to or greater than 20 μg/L were not uncommon. However, most time-weighted, daily mean concentrations were less than 1.0 μg/L from August through April. The largest time-weighted, monthly mean atrazine concentrations occurred during May, June, and July. Most monthly mean concentrations between August and April were less than 0.50 μg/L. Large differences were documented in monthly mean concentrations within the basin. Sites receiving runoff from the northern and northeastern parts of the Delaware River Basin had the largest monthly and annual mean atrazine concentrations. Time-weighted, annual mean atrazine concen trations did not exceed the MCL in water from any sampling site for either the 1993 or 1994 crop years (April—March); however, concentrations were larger during 1994 than during 1993. Time- weighted, annual mean concentrations in water from among the 11 sampling sites during the 1993 crop year ranged from 0.27 to 1.5 μg/L and from 0.36 to 2.8 μg/L during the 1994 crop year. Fur thermore, concentrations in samples from the out- flow of Perry Lake were larger during the first 6 months of the 1995 crop year than during the previous year. Flow-weighted, annual mean atrazine concentrations were larger than time-weighted, annual mean concentrations in water from all sampling sites upstream of Perry Lake, and samples from several sites had concentrations that were substantially larger than the MCL. This difference explained why time-weighted, annual mean concentrations in the outflow of Perry Lake were larger than corresponding time-weighted concentrations in water from sampling sites upstream of Perry Lake. Flow-weighted, annual mean concentrations in water from among the 11 sampling sites during the 1993 crop year ranged from 1.0 to 4.4 and from 1.0 to 8.9 μg/L during the 1994 crop year. Statistically significant linear-regression equa tions were identified relating the percentage of subbasin in cropland to time- and flow-weighted, average annual mean atrazine concentrations. The relations indicate that time-weighted, average annual mean atrazine concentrations may not exceed the MCL in water from subbasins with at least about 70-percent cropland. However, flow- weighted, average annual mean atrazine concen trations may exceed the MCL when the percent- age of cropland is greater than about 40 percent. Approximately 90 percent of the annual atrazine load is transported from May through July. Atrazine loads and yields were larger during the 1993 crop year than during the 1994 crop year because of much greater runoff in 1993. Yields at sampling sites upstream of Perry Lake ranged from 2.4 to 17 lb/mi2 (pounds per square mile) during the 1993 crop year and from 0.29 to 4.4 lb/mi2 during the 1994 crop year. Loads and yields were largest at sampling sites receiving runoff from the northern and northeastern parts of the Delaware River Basin. A statistically significant linear-regression equation was identified relating percentage of subbasin in cropland to atrazine yields. About 283,000 lb (pounds) of atrazine are applied each year in the Delaware River Basin. Annual atrazine loads (5,200 and 2,000 lb), yields (4.7 and 1.8 lb/mi2), and transport ratios (1.8 and 0.7 percent) were estimated for the entire Delaware River Basin for the 1993 and 1994 crop years, respectively. Differences between the 1993 and 1994 crop years are the result of differences in rainfall amounds and subsequent runoff volumes.

Kansas↗

USGS2000

Streamflow changes in the Sierra Nevada, California, simulated using a statistically downscaled general circulation model scenario of climate change

Simulations of future climate using general circulation models (GCMs) suggest that rising concentrations of greenhouse gases may have significant consequences for the global climate. Of less certainty is the extent to which regional scale (i.e., sub-GCM grid) environmental processes will be affected. In this chapter, a range of downscaling techniques are critiqued. Then a relatively simple (yet robust) statistical downscaling technique and its use in the modelling of future runoff scenarios for three river basins in the Sierra Nevada, California, is described. This region was selected because GCM experiments driven by combined greenhouse-gas and sulphate-aerosol forcings consistently show major changes in the hydro-climate of the southwest United States by the end of the 21st century. The regression-based downscaling method was used to simulate daily rainfall and temperature series for streamflow modelling in three Californian river basins under current-and future-climate conditions. The downscaling involved just three predictor variables (specific humidity, zonal velocity component of airflow, and 500 hPa geopotential heights) supplied by the U.K. Meteorological Office couple ocean-atmosphere model (HadCM2) for the grid point nearest the target basins. When evaluated using independent data, the model showed reasonable skill at reproducing observed area-average precipitation, temperature, and concomitant streamflow variations. Overall, the downscaled data resulted in slight underestimates of mean annual streamflow due to underestimates of precipitation in spring and positive temperature biases in winter. Differences in the skill of simulated streamflows amongst the three basins were attributed to the smoothing effects of snowpack on streamflow responses to climate forcing. The Merced and American River basins drain the western, windward slope of the Sierra Nevada and are snowmelt dominated, whereas the Carson River drains the eastern, leeward slope and is a mix of rainfall runoff and snowmelt runoff. Simulated streamflow in the American River responds rapidly and sensitively to daily-scale temperature and precipitation fluctuations and errors; in the Merced and Carson Rivers, the response to the same short-term influences is much less. Consequently, the skill of simulated flows was significantly lower in the American River model than in the Carson and Merced. The physiography of the three basins also accounts for differences in their sensitivities to future climate change. Increases in winter precipitation exceeding +100% coupled with mean temperature rises greater than +2°C result in increased winter streamflows in all three basins. In the Merced and Carson basins, these streamflow increases reflect large changes in winter snowpack, whereas the streamflow changes in the lower elevation American basin are driven primarily by rainfall runoff. Furthermore, reductions in winter snowpack in the American River basin, owing to less precipitation falling as snow and earlier melting of snow at middle elevations, lead to less spring and summer streamflow. Taken collectively, the downscaling results suggest significant changes to both the timing and magnitude of streamflows in the Sierra Nevada by the end of the 21st Century. In the higher elevation basins, the HadCM2 scenario implies more annual streamflow and more streamflow during the spring and summer months that are critical for water-resources management in California. Depending on the relative significance of rainfall runoff and snowmelt, each basin responds in its own way to regional climate forcing. Generally, then, climate scenarios need to be specified — by whatever means — with sufficient temporal and spatial resolution to capture subtle orographic influences if projections of climate-change responses are to be useful and reproducible.

California↗

USGS2016

Users and uses of Landsat 8 satellite imagery—2014 survey results

Executive Summary In 2013, Landsat 8 began adding high quality, global, moderate-resolution imagery to the more than 40-year archive of Landsat imagery. To assess the potential effects of the availability of Landsat 8 imagery on users and their work, the U.S. Geological Survey (USGS) Land Remote Sensing Program (LRS) initiated a survey of Landsat users. The objectives of the survey were to 1. Characterize various Landsat user groups, such as United States (U.S.) and international users and Landsat 8 and non-Landsat 8 users; 2. Identify any differences among user groups in uses and preferences; 3. Measure the importance of and satisfaction with Landsat 8 attributes; 4. Assess the importance to users of the frequency of usable imagery; and 5. Determine any challenges in using Landsat 8. The online survey was sent to 51,617 Landsat users registered with USGS in May 2014. Almost 13,000 people responded to the survey for a response rate of 25 percent (n = 12,966). Current Landsat users (users who had used Landsat in their work in the year prior to the survey) composed 89 percent of the sample (n = 11,549) and past Landsat users composed 11 percent (n = 1,417). The results reported here apply to current Landsat users registered with the USGS Earth Resources Observation and Science (EROS) Center. Users from 161 countries responded to the survey. Of those, 19 percent were citizens or permanent residents of the United States and 81 percent resided in other countries. More than 70 percent of current users had used Landsat 8 in the year prior to the survey. The majority of Landsat 8 users (65 percent) were established users who used Landsat imagery regularly both before and after Landsat 8 imagery became available. The average current Landsat user was male, 36 years old, and highly educated, with 9 years of experience using satellite imagery or geographic information system (GIS) software. Landsat 8 users had, on average, two more years of experience than non-Landsat 8 users. Users were employed predominantly by academic institutions (65 percent), followed by private businesses (13 percent), Federal governments (10 percent), State and local governments (6 percent), and nonprofit organizations (6 percent). Of the Landsat imagery obtained in the past year by current users, on average 31 percent came from a Landsat 8 sensor. An equivalent amount came from the Landsat 7 ETM+ sensor (33 percent); slightly less came from Landsats 4 and 5 TM sensors (27 percent). Much less came from Landsats 1 through 5 MSS sensors (5 percent). Overall, more than a third of users’ work used Landsat imagery (38 percent). Of this work, on average, 37 percent of the work was operational. Landsat 8 users considered a greater proportion of their work operational than non-Landsat 8 users (39 percent compared with 29 percent). Environmental sciences and management were the most commonly selected primary applications (selected by 42 percent of users). Land use/land cover (23 percent) was the second most commonly selected primary application, followed by education (12 percent), agriculture (9 percent), and planning and development (6 percent). Landsat 8 users were asked to rank the importance of certain attributes in determining whether to use Landsat 8 imagery in their work. The archive was ranked most important, followed by cost, spatial resolution, extent of coverage, data quality, and frequency of revisit. Users were asked how satisfied they were with these same attributes as they currently apply to Landsat 8 imagery. On average, users were most satisfied with lack of cost, extent of coverage, data quality, and the archive, but they were satisfied with all attributes. Users were asked how often they needed Landsat imagery to meet various requirements for their primary application. The survey question specifically asked how often users needed usable imagery, which differs from how often they would like the Landsat satellites to acquire an image. Users were asked to identify their needed frequency of usable imagery for the following levels: 1. Threshold level—the minimum frequency of usable imagery needed to be of any value to their primary application. 2. Breakthrough level—the frequency of usable imagery that would result in a significant improvement for their primary application of the imagery. 3. Target level—the frequency of usable imagery that would only provide a limited additional increase in the expected performance for their primary application. To meet the threshold level, three-quarters of users needed usable imagery every 17 days or less frequently. At the breakthrough level, two-thirds of users (64 percent) needed a usable image every 5–16 days. The current constellation of two satellites (Landsat 7 and 8) is capable of meeting the threshold and breakthrough needs of most users at least some of the time, but a single satellite would be highly unlikely to do so. Two-fifths of users (40 percent) felt that usable imagery provided every 4 days or more frequently would meet their target level which the current Landsat constellation cannot provide. Landsat 8 users were significantly more likely than non-Landsat 8 users to need usable imagery more frequently to meet their target levels. Additionally, U.S. Landsat 8 users were significantly more likely than other Landsat users to need usable imagery more frequently in order meet both their breakthrough and target levels. To explore the effect of the availability of Landsat 8 imagery on Landsat imagery use in general, established users (those who had consistently used Landsat imagery both before and after Landsat 8 imagery became available) using Landsat 8 imagery were asked about changes in the amount of Landsat imagery they used. The majority of established users using Landsat 8 imagery (60 percent) reported an average increase of 51 percent in the number of scenes obtained after Landsat 8 imagery became available. Landsat 8 users were asked if they had encountered challenges in using Landsat 8 whereas non-Landsat 8 users were asked if such challenges had played a role in why they were not using Landsat 8 imagery. Although many users did not encounter challenges when using or trying to use Landsat 8 data, slightly less than 30 percent did encounter issues with processing the data to a usable point. The most common issue reported was not being able to create or have access to a surface reflectance corrected product. Other challenges were related to the file sizes of images being too large to download, store, or analyze. There were no statistically significant differences between Landsat 8 and non-Landsat 8 users in terms of challenges encountered when using or trying to use the imagery, which indicates that users were not unduly discouraged by the challenges they may have encountered. When asked about potential consequences of not using Landsat 8, more than half of the non-Landsat 8 users did not report detrimental effects on their work from not using the imagery. Of those who did report detrimental effects, decreased quality of work, decreased scope of work, and increased time spent on work were the most common.

Open-File Report↗

USGS1999

Distribution of major herbicides in ground water of the United States

Information on the concentrations and spatial distributions of pesticides and their transformation products, or degradates, in the hydrologic system is essential for managing pesticide use in both agricultural and nonagricultural settings to protect water resources. This report examines the occurrence of selected herbicides and their degradates in ground water, primarily on the basis of results from two large-scale, multistate investigations by the U.S. Geological Survey—the National Water-Quality Assessment (NAWQA) Program and the Midwest Pesticide Study (MWPS). The NAWQA pesticide data were derived from 2,227 sites (wells and springs) sampled in 20 major hydrologic basins across the United States from 1993 to 1995; the MWPS data were obtained from the sampling of 303 wells in a 12-state area of the northern midcontinent from 1991 to 1994. Data are presented for seven high-use herbicides: five of current interest to the U.S. Environmental Protection Agency for designing Pesticide Management Plans (atrazine, cyanazine, simazine, alachlor and metolachlor), a largely nonagricultural herbicide (prometon), and an agricultural herbicide first registered in 1994 for use in the United States (acetochlor). Six of the herbicides (all except acetochlor) were detected by the U.S. Geological Survey studies in shallow ground water—that is, ground water recharged within the past 10 years—in a variety of agricultural and nonagricultural settings, as well as in several aquifers that are sources of drinking-water supply. Acetochlor was not detected by the MWPS in the summer of 1994, but was detected in shallow ground water during the NAWQA Program by early 1995, and during another U.S. Geological Survey study in Iowa during the summers of 1995 and 1996. The acetochlor observations suggest that, in agreement with results from previous field studies, some pesticides may be detected in shallow ground water within 1 year following their application. In accord with the results from other largescale multistate studies of pesticides in ground water, more than 98 percent of the detections during the NAWQA and MWPS investigations were at concentrations of less than 1 microgram per liter. Consequently, water quality criteria for drinking water—that is, standards established to protect human health—were exceeded at fewer than 0.1 percent of the sites sampled by NAWQA (all of these exceedances involving atrazine alone) and at none of those sampled in 1992 by the MWPS. These criteria, however, may not accurately reflect the overall health risks associated with pesticide detections in water resources because they have been established only for a relatively small number of pesticides and they do not account for the additive or synergistic effects of mixtures, impacts on the health of aquatic ecosystems, or the effects of pesticide degradates. Among the sites sampled during the NAWQA and MWPS investigations, 19.7 and 13.8 percent, respectively, had detections of two or more of the herbicides of interest. Furthermore, for most of the herbicides for which degradates were examined, detection frequencies for major degradates were typically higher than for their respective parent compounds, particularly for the herbicides that are less persistent in aerobic soil. Frequencies of detection at or above 0.01 microgram per liter in shallow ground water beneath agricultural areas during the NAWQA study were significantly correlated with agricultural use in those areas for atrazine, cyanazine, alachlor, and metolachlor (P<0.05; Spearman rank correlations), but not for simazine (P>0.05). In urban areas, overall frequencies of detection of these five herbicides in shallow ground water were positively correlated with their total nonagricultural use nationwide (P=0.026; simple linear correlation). Multivariate statistical analysis indicated that frequencies of detection in shallow ground water beneath agricultural areas were positively correlated with half-lives for transformation in aerobic soil and agricultural use of the compounds (P≤0.0001 for both parameters). Although frequencies of detection were not significantly correlated with their subsurface mobility (K oc ; P=0.19) or the median well depths of the sampled networks (P=0.72), the range of K oc values among the five herbicides and the range of well depths were limited.

Water-Resources Investigations Report↗

USGS2006

The Amphibian Research and Monitoring Initiative (ARMI): 5-year report

The Amphibian Research and Monitoring Initiative (ARMI) is an innovative, multidisciplinary program that began in 2000 in response to a congressional directive for the Department of the Interior to address the issue of amphibian declines in the United States. ARMI’s formulation was cross-disciplinary, integrating U.S. Geological Survey scientists from Biology, Water, and Geography to develop a course of action (Corn and others, 2005a). The result has been an effective program with diverse, yet complementary, expertise. ARMI’s approach to research and monitoring is multiscale. Detailed investigations focus on a few species at selected local sites throughout the country; monitoring addresses a larger number of species over broader areas (typically, National Parks and National Wildlife Refuges); and inventories to document species occurrence are conducted more extensively across the landscape. Where monitoring is conducted, the emphasis is on an ability to draw statistically defensible conclusions about the status of amphibians. To achieve this objective, ARMI has instituted a monitoring response variable that has nationwide applicability. At research sites, ARMI focuses on studying species/environment interactions, determining causes of observed declines, and developing new techniques to sample populations and analyze data. Results from activities at all scales are provided to scientists, land managers, and policymakers, as appropriate. The ARMI program and the scientists involved contribute significantly to understanding amphibian declines at local, regional, national, and international levels. Within National Parks and National Wildlife Refuges, findings help land managers make decisions applicable to amphibian conservation. For example, the National Park Service (NPS) selected amphibians as a vital sign for several of their monitoring networks, and ARMI scientists provide information and assistance in developing monitoring methods for this NPS effort. At the national level, ARMI has had major exposure at a variety of meetings, including a dedicated symposium at the 2004 joint meetings of the Herpetologists’ League, the American Society of Ichthyologists and Herpetologists, and the Society for the Study of Amphibians and Reptiles. Several principal investigators have brought international exposure to ARMI through venues such as the World Congress of Herpetology in South Africa in 2005 (invited presentation by Dr. Gary Fellers), the Global Amphibian Summit, sponsored by the International Union for Conservation of Nature (IUCN) and Wildlife Conservation International, in Washington, D.C., 2005 (invited participation by Dr. P.S. Corn), and a special issue of the international herpetological journal Alytes focused on ARMI in 2004 (edited by Dr. C.K. Dodd, Jr.). ARMI research and monitoring efforts have addressed at least 7 of the 21 Threatened and Endangered Species listed by the U.S. Fish and Wildlife Service (California red-legged frog [Rana draytonii], Chiricahua leopard frog [R. chiricahuensis], arroyo toad [Bufo californicus], dusky gopher frog [Rana sevosa], mountain yellow-legged frog [R. muscosa], flatwoods salamander [Ambystoma cingulatum], and the golden coqui [Eleutherodactylus jasperi]), and 9 additional species of concern recognized by the IUCN. ARMI investigations have addressed time-sensitive research, such as emerging infectious diseases and effects on amphibians related to natural disasters like wildfire, hurricanes, and debris flows, and the effects of more constant, environmental change, like urban expansion, road development, and the use of pesticides. Over the last 5 years, ARMI has partnered with an extensive list of government, academic, and private entities. These partnerships have been fruitful and have assisted ARMI in developing new field protocols and analytic tools, in using and refining emerging technologies to improve accuracy and efficiency of data handling, in conducting amphibian disease, malformation, and environmental effects research, and in implementing a network of monitoring and research sites. Accomplishments from these endeavors include more than 40 publications on amphibian status and trends, nearly 100 publications on amphibian ecology and causes of declines, and over 30 methodological publications. Several databases have emerged as a result of ARMI and its partnerships; one, a digital atlas of ranges for all U.S. amphibian species, was used by the IUCN to display amphibian distribution maps in the Global Amphibian Assessment Project. Given the scope of ARMI and the panoply of projects, findings have had implications for policy. Investigations that demonstrate amphibian declines or illuminate causes of declines provide valuable information about habitat management, environmental effects, mechanisms for the spread of disease, and human/amphibian interfaces. This information has been made available to land managers, scientists, educators, Congress and other policymakers, and the public. The support afforded ARMI by Congress has been influential in the program’s development and success. The value of ARMI’s efforts will continue to increase as we are able to extend our studies spatially and temporally to answer critical questions with more confidence. We are using ARMI’s resources efficiently and continuing to develop innovative mechanisms for leveraging resources for maximum effectiveness during challenging financial times. This report is a 5-year retrospective of the structure, methodology, progress, and contributions to the broader scientific community that have resulted from this national USGS program. We evaluate ARMI’s success to date, with regard to the challenges faced by the program and the strengths that have emerged. We chart objectives for the next 5 years that build on current accomplishments, highlight areas meriting further research, and direct efforts to overcome existing weaknesses.

Scientific Investigations Report↗

USGS2014

Simulation of the effects of rainfall and groundwater use on historical lake water levels, groundwater levels, and spring flows in central Florida

The urbanization of central Florida has progressed substantially in recent decades, and the total population in Lake, Orange, Osceola, Polk, and Seminole Counties more than quadrupled from 1960 to 2010. The Floridan aquifer system is the primary source of water for potable, industrial, and agricultural purposes in central Florida. Despite increases in groundwater withdrawals to meet the demand of population growth, recharge derived by infiltration of rainfall in the well-drained karst terrain of central Florida is the largest component of the long-term water balance of the Floridan aquifer system. To complement existing physics-based groundwater flow models, artificial neural networks and other data-mining techniques were used to simulate historical lake water level, groundwater level, and spring flow at sites throughout the area. Historical data were examined using descriptive statistics, cluster analysis, and other exploratory analysis techniques to assess their suitability for more intensive data-mining analysis. Linear trend analyses of meteorological data collected by the National Oceanic and Atmospheric Administration at 21 sites indicate 67 percent of sites exhibited upward trends in air temperature over at least a 45-year period of record, whereas 76 percent exhibited downward trends in rainfall over at least a 95-year period of record. Likewise, linear trend analyses of hydrologic response data, which have varied periods of record ranging in length from 10 to 79 years, indicate that water levels in lakes (307 sites) were about evenly split between upward and downward trends, whereas water levels in 69 percent of wells (out of 455 sites) and flows in 68 percent of springs (out of 19 sites) exhibited downward trends. Total groundwater use in the study area increased from about 250 million gallons per day (Mgal/d) in 1958 to about 590 Mgal/d in 1980 and remained relatively stable from 1981 to 2008, with a minimum of 559 Mgal/d in 1994 and a maximum of 773 Mgal/d in 2000. The change in groundwater-use trend in the early 1980s and the following period of relatively slight trend is attributable to the concomitant effects of increasing public-supply withdrawals and decreasing use of water by the phosphate industry and agriculture. On the basis of available historical data and exploratory analyses, empirical lake water-level, groundwater-level, and spring-flow models were developed for 22 lakes, 23 wells, and 6 springs. Input time series consisting of various frequencies and frequency-band components of daily rainfall (1942 to 2008) and monthly total groundwater use (1957 to 2008) resulted in hybrid signal-decomposition artificial neural network models. The final models explained much of the variability in observed hydrologic data, with 43 of the 51 sites having coefficients of determination exceeding 0.6, and the models matched the magnitude of the observed data reasonably well, such that models for 32 of the 51 sites had root-mean-square errors less than 10 percent of the measured range of the data. The Central Florida Artificial Neural Network Decision Support System was developed to integrate historical databases and the 102 site-specific artificial neural network models, model controls, and model output into a spreadsheet application with a graphical user interface that allows the user to simulate scenarios of interest. Overall, the data-mining analyses indicate that the Floridan aquifer system in central Florida is a highly conductive, dynamic, open system that is strongly influenced by external forcing. The most important external forcing appears to be rainfall, which explains much of the multiyear cyclic variability and long-term downward trends observed in lake water levels, groundwater levels, and spring flows. For most sites, groundwater use explains less of the observed variability in water levels and flows than rainfall. Relative groundwater-use impacts are greater during droughts, however, and long-term trends in water levels and flows were identified that are consistent with historical groundwater-use patterns. The sensitivity of the hydrologic system to rainfall is expected, owing to the well-drained karst terrain and relatively thin confinement of the Floridan aquifer system in much of central Florida. These characteristics facilitate the relatively rapid transmission of infiltrating water from rainfall to the water table and contribute to downward leakage of water to the Floridan aquifer system. The areally distributed nature of rainfall, as opposed to the site-specific nature of groundwater use, and the generally high transmissivity and low storativity properties of the semiconfined Floridan aquifer system contribute to the prevalence of water-level and flow patterns that mimic rainfall patterns. In general, the data-mining analyses demonstrate that the hydrologic system in central Florida is affected by groundwater use differently during wet periods, when little or no system storage is available (high water levels), compared to dry periods, when there is excess system storage (low water levels). Thus, by driving the overall behavior of the system, rainfall indirectly influences the degree to which groundwater use will effect persistent trends in water levels and flows, with groundwater-use impacts more prevalent during periods of low water levels and spring flows caused by low rainfall and less prevalent during periods of high water levels and spring flows caused by high rainfall. Differences in the magnitudes of rainfall and groundwater use during wet and dry periods also are important determinants of hydrologic response. An important implication of the data-mining analyses is that rainfall variability at subannual to multidecadal timescales must be considered in combination with groundwater use to provide robust system-response predictions that enhance sustainable resource management in an open karst aquifer system. The data-driven approach was limited, however, by the confounding effects of correlation between rainfall and groundwater use, the quality and completeness of the historical databases, and the spatial variations in groundwater use. The data-mining analyses indicate that available historical data when used alone do not contain sufficient information to definitively quantify the related individual effects of rainfall and groundwater use on hydrologic response. The knowledge gained from data-driven modeling and the results from physics-based modeling, when compared and used in combination, can yield a more comprehensive assessment and a more robust understanding of the hydrologic system than either of the approaches used separately.

Florida↗