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USGS2015

Combining NLCD and MODIS to create a land cover-albedo database for the continental United States

Land surface albedo is an essential climate variable that is tightly linked to land cover, such that specific land cover classes (e.g., deciduous broadleaf forest, cropland) have characteristic albedos. Despite the normative of land-cover class specific albedos, there is considerable variability in albedo within a land cover class. The National Land Cover Database (NLCD) and the Moderate Resolution Imaging Spectroradiometer (MODIS) albedo product were combined to produce a long-term (14 years) integrated land cover-albedo database for the continental United States that can be used to examine the temporal behavior of albedo as a function of land cover. The integration identifies areas of homogeneous land cover at the nominal spatial resolution of the MODIS (MCD43A) albedo product (500 m × 500 m) from the NLCD product (30 m × 30 m), and provides an albedo data record per 500 m × 500 m pixel for 14 of the 16 NLCD land cover classes. Individual homogeneous land cover pixels have up to 605 albedo observations, and 75% of the pixels have at least 319 MODIS albedo observations (≥ 50% of the maximum possible number of observations) for the study period (2000–2013). We demonstrated the utility of the database by conducting a multivariate analysis of variance of albedo for each NLCD land cover class, showing that locational (pixel-to-pixel) and inter-annual variability were significant factors in addition to expected seasonal (intra-annual) and geographic (latitudinal) effects.

Remote Sensing of Environment↗

USGS2025

Peak streamflow trends in Montana and northern Wyoming and their relation to changes in climate, water years 1921–2020

Frequency analysis on annual peak streamflow (hereinafter, peak flow) is essential to water-resources management applications, including critical structure design (for example, bridges and culverts) and floodplain mapping. Nonstationarity is a statistical property of a peak-flow series such that the distributional properties (the mean, variance, or skew) change either gradually (monotonic trend) or abruptly (shift, step change or change point) through time. Not incorporating or accounting for observed nonstationarity into peak-flow frequency analysis might result in a poor representation of the true probability of large floods and thus misrepresent the actual flood risks to life and property. This report summarizes how hydroclimatic variability might affect the temporal and spatial distributions of peak-flow data in the State of Montana (and northern Wyoming) and is part of a larger study to document peak-flow nonstationarity and hydroclimatic changes across a nine-State region consisting of Illinois, Iowa, Michigan, Minnesota, Missouri, Montana, North Dakota, South Dakota, and Wisconsin. A wide range of analyses and statistical approaches are applied to document the primary mechanisms controlling floods and characterize temporal changes in hydroclimatic variables and peak flows. This study was completed in cooperation with the Montana Department of Natural Resources and Conservation. The purpose of this report is to characterize temporal and spatial patterns of nonstationarity in peak flows and hydroclimatology in Montana and northern Wyoming. In this evaluation, peak-flow, daily streamflow, and model-simulated gridded climatic data were examined for monotonic trends, change points, and other statistical properties that might indicate changing climatic and environmental conditions. This report includes background information on the study area, the history of U.S. Geological Survey peak-flow data collection and frequency analysis in Montana, and the review of research relating to hydroclimatic variability and change in Montana. This study might help provide a framework for addressing potential nonstationarity issues in peak-flow frequency updates that commonly are completed by the U.S. Geological Survey in cooperation with other agencies throughout the Nation. The analytical structure of this study includes analyses of monotonic trends and change points in numerous hydroclimatic variables in assigned 30-, 50-, 75-, and 100-year analysis periods. For Montana and part of Wyoming, the 30-, 50-, 75, and 100-year analyses included 157, 70, 48, and 12 streamgages, respectively. For those streamgages, nonstationarities were analyzed in the following variables: (1) climatic variables, including annual and seasonal (winter, spring, summer, and fall) temperature and precipitation; (2) daily streamflow variables, including the annual center of volume duration, annual center of volume median, and peaks over threshold with a mean of four events per year; and (3) annual peak-flow variables, including peak-flow timing and magnitude. A likelihood approach was used to express statistical confidence and assign the nonstationarity results as likely upward or downward (highest statistical confidence), somewhat likely upward or downward (less statistical confidence), or about as likely as not (little statistical confidence; hereinafter, neutral). For the nonstationarity analyses of the climatic, daily streamflow, and peak-flow variables, the results are presented in detail and discussed with respect to statewide patterns and geographic variability. For each of the 30-, 50-, and 75-year analyses, peak-flow change-point and monotonic trend analyses were compiled for streamgages classified with likely downward or likely upward trends. For those streamgages, the associated basin characteristics and nonstationarity results for peak-flow timing, daily streamflow, and climatic variables were investigated and statistically compared to discern associations among other variables that might contribute to the peak-flow nonstationarity results. The 50- and 75-year peak-flow nonstationarities identified in this study are mostly downward, in association with mostly upward temperature and potential evapotranspiration:precipitation monotonic trends. For the 50-, 75-, and 100-year analyses, the peak-flow change points are predominantly downward and are concentrated in the 1970s and 1980s, which indicates general consistency among the longer trend periods. These findings are in association with substantial research documenting globally rising temperature and atmospheric greenhouse gas concentrations that might be largely attributed to anthropogenic activities. Anthropogenic effects might represent long-term (on the order of several decades to more than a century) climate changes that might happen within highly variable natural climate fluctuations. Several paleo studies in the north-central United States have indicated that hydroclimatic extremes (that is, low- and high-streamflow conditions) before European settlement have been outside of extremes since the 1900s. Depending on the interactions of anthropogenic effects and natural climate variability, extreme high-streamflow conditions might occur in the future, even in the presence of long-term downward peak-flow trends.

Montana, Wyoming↗

USGS2015

Land-cover types, shoreline positions, and sand extents derived From Landsat satellite imagery, Assateague Island to Metompkin Island, Maryland and Virginia, 1984 to 2014

The U.S. Geological Survey has a long history of responding to and documenting the impacts of storms along the Nation’s coasts and incorporating these data into storm impact and coastal change vulnerability assessments. These studies, however, have traditionally focused on sandy shorelines and sandy barrier-island systems, without consideration of impacts to coastal wetlands. The goal of the Barrier Island and Estuarine Wetland Physical Change Assessment project is to integrate a wetland-change assessment with existing coastal-change assessments for the adjacent sandy dunes and beaches, initially focusing on Assateague Island along the Maryland and Virginia coastline. Assateague Island was impacted by waves and storm surge associated with the passage of Hurricane Sandy in October 2012, including erosion and overwash along the ocean-facing sandy shoreline as well as erosion and overwash deposition in the back-barrier and estuarine bay environments. This report serves as an archive of data that were derived from Landsat 5 and Landsat 8 imagery from 1984 to 2014, including wetland and terrestrial habitat extents; open-ocean, back-barrier, and estuarine mainland shoreline positions; and sand-line positions along the estuarine mainland and barrier shorelines from Assateague Island, Maryland to Metompkin Island, Virginia. The geographic information system data files with accompanying formal Federal Geographic Data Committee metadata can be downloaded from the Data Downloads page.

Maryland, Virginia↗

USGS2003

Trace elements and synthetic organic compounds in streambed sediment and fish tissue in the Great and Little Miami River basins, Ohio and Indiana, 1990-98

Streambed-sediment and fish-tissue samples were collected at eight sites in the Great and Little Miami Basins as part of the U.S. Geological Survey's National Water Quality Assessment Program. The samples were analyzed for trace elements and synthetic organic compounds, including organochlorine insecticides, polychlorinated biphenyls (PCBs), and semivolatile compounds (SVOCs). Data from state-agency investigations within the study unit (more than 200 sites) were incorporated to gain a broader perspective of the occurrence and distribution of contaminants in the study unit. All data were compared to streambed-sediment-quality guidelines and fish-tissue guidelines to identify elevated contaminant concentrations. Guideline exceedances were plotted on distribution maps to identify areas in the study unit that may be of potential concern for wildlife health. Several trace elements were detected in both sediment and fish-tissue samples. In sediment, lead and zinc were most frequently detected at levels that may have adverse effects on aquatic organisms. Generally, only one of the trace elements analyzed for per site exceeded concentrations above which adverse biological effects are frequently anticipated. Organochlorine insecticides were infrequently detected in sediment or fish tissue throughout the study unit. More organochlorine insecticides were detected in fish tissues than in sediment; however, more guidelines were exceeded in sediment. No distinct geographic overlap between sediment and fish-tissue sites was evident with respect to elevated organochlorine insecticide concentrations. Sediment-quality guideline exceedances were generally widespread throughout the study unit, whereas fish-tissue guidelines were exceeded only on the Mad River. PCBs were detected more often in fish tissue than in sediment throughout the study unit. Elevated PCB concentrations in fish tissue were common and widespread. No distinct geographic overlap of PCB exceedances was evident between sediment and fish-tissue sites. In sediments, elevated concentrations were detected most often for SVOCs, particularly for polycyclic aromatic hydrocarbons (PAHs). Areas where SVOC guidelines were frequently exceeded include the Great Miami River main stem from Dayton to south of Hamilton, and the Upper Little Miami River Basin in Greene County. Overall, a higher frequency of trace-element detections in fish tissue and sediment trace-element guideline exceedances was found in the Great Miami River Basin than in the Little Miami River Basin. Organochlorine insecticide guidelines for fish tissue and sediment, as well as PCB and SVOC guidelines for sediment also were exceeded more frequently in the Great Miami River Basin. PCB guideline exceedances for fish tissue were found more often in the Little Miami River Basin.

Water-Resources Investigations Report↗

USGS2016

Statistical analysis and mapping of water levels in the Biscayne aquifer, water conservation areas, and Everglades National Park, Miami-Dade County, Florida, 2000–2009

Statistical analyses and maps representing mean, high, and low water-level conditions in the surface water and groundwater of Miami-Dade County were made by the U.S. Geological Survey, in cooperation with the Miami-Dade County Department of Regulatory and Economic Resources, to help inform decisions necessary for urban planning and development. Sixteen maps were created that show contours of (1) the mean of daily water levels at each site during October and May for the 2000–2009 water years; (2) the 25th, 50th, and 75th percentiles of the daily water levels at each site during October and May and for all months during 2000–2009; and (3) the differences between mean October and May water levels, as well as the differences in the percentiles of water levels for all months, between 1990–1999 and 2000–2009. The 80th, 90th, and 96th percentiles of the annual maximums of daily groundwater levels during 1974–2009 (a 35-year period) were computed to provide an indication of unusually high groundwater-level conditions. These maps and statistics provide a generalized understanding of the variations of water levels in the aquifer, rather than a survey of concurrent water levels. Water-level measurements from 473 sites in Miami-Dade County and surrounding counties were analyzed to generate statistical analyses. The monitored water levels included surface-water levels in canals and wetland areas and groundwater levels in the Biscayne aquifer. Maps were created by importing site coordinates, summary water-level statistics, and completeness of record statistics into a geographic information system, and by interpolating between water levels at monitoring sites in the canals and water levels along the coastline. Raster surfaces were created from these data by using the triangular irregular network interpolation method. The raster surfaces were contoured by using geographic information system software. These contours were imprecise in some areas because the software could not fully evaluate the hydrology given available information; therefore, contours were manually modified where necessary. The ability to evaluate differences in water levels between 1990–1999 and 2000–2009 is limited in some areas because most of the monitoring sites did not have 80 percent complete records for one or both of these periods. The quality of the analyses was limited by (1) deficiencies in spatial coverage; (2) the combination of pre- and post-construction water levels in areas where canals, levees, retention basins, detention basins, or water-control structures were installed or removed; (3) an inability to address the potential effects of the vertical hydraulic head gradient on water levels in wells of different depths; and (4) an inability to correct for the differences between daily water-level statistics. Contours are dashed in areas where the locations of contours have been approximated because of the uncertainty caused by these limitations. Although the ability of the maps to depict differences in water levels between 1990–1999 and 2000–2009 was limited by missing data, results indicate that near the coast water levels were generally higher in May during 2000–2009 than during 1990–1999; and that inland water levels were generally lower during 2000–2009 than during 1990–1999. Generally, the 25th, 50th, and 75th percentiles of water levels from all months were also higher near the coast and lower inland during 2000–2009 than during 1990–1999. Mean October water levels during 2000–2009 were generally higher than during 1990–1999 in much of western Miami-Dade County, but were lower in a large part of eastern Miami-Dade County.

Florida↗

USGS2023

Simulation of regional groundwater flow and advective transport of per- and polyfluoroalkyl substances, Joint Base McGuire-Dix-Lakehurst and vicinity, New Jersey, 2018

A three-dimensional numerical model of groundwater flow was developed and calibrated for the unconsolidated New Jersey Coastal Plain aquifers underlying Joint Base McGuire-Dix-Lakehurst (JBMDL) and vicinity, New Jersey, to evaluate groundwater flow pathways of per- and polyfluoroalkyl substances (PFAS) contamination associated with use of aqueous film forming foam (AFFF) at the base. The regional subsurface flow model spans an area of approximately 518 square miles around JBMDL and is based on a previously developed hydrogeologic framework of the area. Steady-state flow in the unconsolidated aquifers was simulated using the MODFLOW 6 groundwater flow model, which is able to account for hydrostratigraphic pinchouts and discontinuities in the Coastal Plain aquifers underlying JBMDL. To account for local patterns of fluid flow driving advective subsurface migration of PFAS, the grid was refined using quadtree meshes spanning 21 areas where historical AFFF use was identified, five off-site reconnaissance areas identified by AFCEC as areas in which the occurrence of PFAS is most likely to pose a potential danger to local drinking water supplies, and along streams that behave as drains in the base-flow-dominated Coastal Plain. Following grid refinement, four physical processes known to govern subsurface flow were introduced to the model. These included effective precipitation recharge, discharge to streams and stream-connected wetlands, regional inflows and outflows along the model bottom, and withdrawals from wells, each of which were incorporated into the model as either external or internal boundary conditions. To account for effective precipitation recharge, a specified-flow boundary was assigned along the top of the model. Similarly, regional flows predicted using the modified U.S Geological Survey’s New Jersey Coastal Plain Regional Aquifer System Analysis model were treated as specified-flow boundary conditions along the bottom of the model. Base-flow losses were treated as drains along streams delineated using a 10-foot LiDAR dataset. Drains were also assigned to cells falling within stream-connected National Hydrologic Database wetlands. Finally, well-pumpage data mined from the New Jersey Water Transfer database were added to the model to account for extraction of groundwater through pumping from industrial-supply and drinking-water-supply wells. Along model edges established at groundwater divides, where the net flux of water across the boundary is equal to zero, natural no-flow boundary conditions were imposed. The refined flow model was calibrated using the parameter-estimation (PEST) program, which adjusts model parameters by performing a gradient search over the sum-of-squared-error objective function until the parameter set that produces simulated water levels and base flows most closely matches 544 water levels and 20 estimated base flows and closely adheres to initial parameter estimates. Based on the analysis of calibration residuals, the model did not appear to be affected by significant model structural error. The MODPATH particle-tracking algorithm was used to estimate advective transport paths of PFAS in the vicinity of JBMDL. Forward tracking was used to determine paths of PFAS away from AFFF source areas to streams, wetlands, pumping wells, and geographic areas that PFAS may contaminate. Additionally, reverse tracking was used to determine particle pathlines away from off-site PFAS reconnaissance areas, or areas within which all sources of PFAS might be advectively transported into subsurface drinking-water supplies, to locations at land surface that may indicate a source of PFAS. The coupled and calibrated groundwater flow and particle-tracking transport model provide valuable tools for predicting the relative extent of PFAS contamination from onsite legacy source areas. The calibrated model also provides measures of water-level and base-flow observation influence that can help guide future data-collection efforts related to groundwater and surface water sampling for PFAS.

New Jersey↗

USGS2002

Occurrence and status of volatile organic compounds in ground water from rural, untreated, self-supplied domestic wells in the United States, 1986-99

Samples of untreated ground water from 1,926 rural, self-supplied domestic wells were analyzed for volatile organic compounds (VOCs) during 1986-99. This information was used to characterize the occurrence and status of VOCs in domestic well water. The samples were either collected as part of the U.S. Geological Survey?s National Water-Quality Assessment (NAWQA) Program occurrence-assessment studies or were compiled by NAWQA from existing ambient ground-water or source-water-quality monitoring programs conducted by local, State, and other Federal agencies. Water samples were collected at the wellhead prior to treatment or storage. In most samples, 55 target VOCs were analyzed, and occurrence and status information generally was computed at an assessment level of 0.2 mg/L (microgram per liter). At least one VOC was detected in 12 percent of samples (232 samples) at an assessment level of 0.2 mg/L. This detection frequency is relatively low compared to the 26 percent detection frequency of at least one VOC in public sup-ply wells sampled by NAWQA, and the difference may be due, in part, to the higher pumping rates, pumping stress factors, and larger contributing areas of public supply wells. Samples with detections of at least one VOC were collected from wells located in 31 of 39 States. Solvents were the most frequently detected VOC group with detections in 4.6 percent of samples (89 samples) at an assessment level of 0.2 mg/L. The geographic distribution of detections of some VOC groups, such as fumigants and oxygenates, relates to the use pattern of com-pounds in that group. With the exception of com-pounds used in organic synthesis, detection frequencies of VOCs by group are proportional to the average half-life of compounds in the group. When the organic synthesis group is excluded from the analysis, a good correlation exists between the detection frequency of VOCs by group and average half-life of compounds in the group. Individually, VOCs were not commonly detected at an assessment level of 0.2 mg/L, with the seven most frequently detected VOCs found in only 1 to 5 percent of samples. Mixtures (two or more compounds) were a common mode of occurrence for VOCs when no assessment level was applied, and mixtures occurred in one-half of all samples that contained at least one VOC. Only 1.4 percent of samples (27 samples) had one or more VOC concentrations that exceeded a federally established drinking-water standard or health criterion. Only 0.1 percent of samples (2 samples) had one or more VOC concentrations that exceeded a taste/odor threshold. Potential point sources of VOCs near domestic wells are numerous. Leaks from under-ground storage tanks and aboveground storage tanks that hold gasoline, diesel fuel, or heating oil have the potential to be major point sources of contaminants to domestic wells. Shock chlorination may be a source of trichloromethane and other trihalomethanes in some domestic wells. Septic systems are believed to be an important source of contaminants to domestic wells, but extensive research on this subject does not exist. VOCs frequently are ingredients in household products such as cleansers and insecticides, and some VOCs have been found in septic systems.

Water-Resources Investigations Report↗

USGS2002

Rocky Mountain futures: An ecological perspective

The Rocky Mountain West is largely arid and steep, with ecological scars from past human use visible for hundreds of years. Just how damaging were the past 150 years of activity? How do current rates of disturbance compare with past mining, grazing, and water diversion activities? In the face of constant change, what constitutes a "natural" ecosystem? And can a high quality of life be achieved for both human and natural communities in this region. Rocky Mountain Futures presents a comprehensive and wide-ranging examination of the ecological consequences of past, current, and future human activities in the Rocky Mountain region of the United States and Canada. The book brings together 32 leading ecologists, geographers, and other scientists and researchers to present an objective assessment of the cumulative effects of human activity on the region's ecological health and to consider changes wrought by past human use. This combined view of past and present reveals where Rocky Mountain ecosystems are heading, and the authors project what the future holds based upon current economic and social trends and the patterns that emerge from them. The book: examines the biogeographic and paleoenvironmental setting and historical climate that have shaped Rocky Mountain ecosystems traces the direct human influences on landscapes and ecosystems over the past 150 years explores the cumulative effects of past, present, and projected future human activities on tundra, subalpine and montane forests, valleys, grasslands, and waters offers case studies that illustrate specific examples of human influence and current efforts to restore the environment Case studies focus on northern New Mexico; Summit County, Colorado; Flathead Valley, Montana; and Alberta, Canada. Among the contributors are Craig D. Allen, N. Thompson Hobbs, Linda L. Joyce, Robert E. Keane, David Schindler, Timothy R. Seastedt, David Theobald, Diana Tomback, William Travis, Cathy Whitlock, and Jack Stanford. The United Nations has proclaimed 2002 as the International Year of Mountains to increase international awareness of the global importance of mountain ecosystems. The case-based multidisciplinary approach of this book constitutes an important new model for understanding the implications of land-use practices and economic activity on mountains, and will serve a vital role in improving decisionmaking both in the Rocky Mountains and in other parts of the world that face similar challenges.

Book↗

USGS2015

Synoptic evaluation of scale-dependent metrics for hydrographic line feature geometry

Methods of acquisition and feature simplification for vector feature data impact cartographic representations and scientific investigations of these data, and are therefore important considerations for geographic information science (Haunert and Sester 2008). After initial collection, linear features may be simplified to reduce excessive detail or to furnish a reduced-scale version of the features through cartographic generalization (Regnauld and McMaster 2008, Stanislawski et al. 2014). A variety of algorithms exist to simplify linear cartographic features, and all of the methods affect the positional accuracy of the features (Shahriari and Tao 2002, Regnauld and McMaster 2008, Stanislawski et al. 2012). In general, simplification operations are controlled by one or more tolerance parameters that limit the amount of positional change the operation can make to features. Using a single tolerance value can have varying levels of positional change on features; depending on local shape, texture, or geometric characteristics of the original features (McMaster and Shea 1992, Shahriari and Tao 2002, Buttenfield et al. 2010). Consequently, numerous researchers have advocated calibration of simplification parameters to control quantifiable properties of resulting changes to the features (Li and Openshaw 1990, Raposo 2013, Tobler 1988, Veregin 2000, and Buttenfield, 1986, 1989). This research identifies relations between local topographic conditions and geometric characteristics of linear features that are available in the National Hydrography Dataset (NHD). The NHD is a comprehensive vector dataset of surface 18 th ICA Workshop on Generalisation and Multiple Representation, Rio de Janiero, Brazil 2015 2 water features within the United States that is maintained by the U.S. Geological Survey (USGS). In this paper, geometric characteristics of cartographic representations for natural stream and river features are summarized for subbasin watersheds within entire regions of the conterminous United States and compared to topographic metrics. A concurrent processing workflow is implemented using a Linux high-performance computing cluster to simultaneously process multiple subbasins, and thereby complete the work in a fraction of the time required for a single-process environment. In addition, similar metrics are generated for several levels of simplification of the hydrographic features to quantify the effects of simplification over the various landscape conditions. Objectives of this exploratory investigation are to quantify geometric characteristics of linear hydrographic features over the various terrain conditions within the conterminous United States and thereby illuminate relations between stream geomorphological conditions and cartographic representation. The synoptic view of these characteristics over regional watersheds that is afforded through concurrent processing, in conjunction with terrain conditions, may reveal patterns for classifying cartographic stream features into stream geomorphological classes. Furthermore, the synoptic measurement of the amount of change in geometric characteristics caused by the several levels of simplification can enable estimation of tolerance values that appropriately control simplification-induced geometric change of the cartographic features within the various geomorphological classes in the country. Hence, these empirically derived rules or relations could help generate multiscale-representations of features through automated generalization that adequately maintain surface drainage variations and patterns reflective of the natural stream geomorphological conditions across the country.

Conference Paper↗

USGS2001

Sea otter studies in Glacier Bay National Park and Preserve: Aerial surveys, foraging observations, and intertidal clam sampling

Following translocations to the outer coast of Southeast Alaska in 1965, sea otters have been expanding their range and increasing in abundance. We began conducting surveys for sea otters in Cross Sound, Icy Strait and Glacier Bay, Alaska in 1994, following initial reports of their presence in Glacier Bay in 1993. Since 1995, the number of sea otters in Glacier Bay proper has increased from about 5 to more than 500. Between 1993 and 1997 sea otters were apparently only occasional visitors to Glacier Bay, but in 1998 long-term residence was established as indicated by the presence of adult females and their dependent pups. Sea otter distribution is limited to the Lower Bay, south of Sandy Cove, and is not continuous within that area. Concentration occur in the vicinity of Sita Reef and Boulder Island and between Pt. Carolus and Rush Pt. on the west side of the Bay (Figure 1). We describe the diet of sea otters in Glacier Bay and south Icy Strait through visual observations of prey during >4,000 successful forage dives. In 2,399 successful foraging dives observed in Glacier Bay proper, diet consisted of 40% clam, 21% urchins, 18% mussel, 4% crab, 5% other and 12% unidentified. Most prey recovered by sea otters are commercially, socially, or ecological important species. Species of clam are primarily Saxidomus gigantea , Protothaca staminea , and Serripes groenlandicus . Urchins are primarily Strongylocentrotus droebachiensis while both mussles, Modiolus modiolus and Mytilus trossulus , are taken. Crabs include species of Cancer, Chinoecetes, Paralithodes, and Telmessus. Although we characterize diet at broad geographic scales, we found diet to vary between sites separated by as little as several hundred meters. Dietary variation among and within sites can reflect differences in prey availability and individual choice. We estimated species composition, density, biomass, and sizes of intertidal clams at 59 sites in Glacier Bay, 14 sites in Idaho Inlet, 12 sites in Port Althorp and 2 sites in Dundas Bay. There is no direct evidence of otter foraging at any of our clam sampling sites except at Port Althorp where sea otters have been present for >20 years and regularly forage intertidally. There is some indication of intertidal foraging in Idaho Inlet, based on reduced mean size of preferred clam species. Sea otters have been present in Idaho Inlet for at least 12 years. We sampled 48 systematically selected sites to allow inference throughout Glacier Bay intertidal areas and 12 preferred habitat intertidal sites to estimate maximum clam densities in the Bay. We also sampled 14 and 12 random sites in Idaho Inlet and Port Althorp, respectively, to provide contrast between sites with and without sea otters. Densities and biomass of intertidal clams were greater in the Lower Bay than either the East or West Arms. Mean densities (#/0.25m 2 ) of all species of clams > 10.0 mm total length were 96.5 at preferred sites, 32.8 in the Lower Bay, 12.2 in the East Arm, 6.6 in the West Arm, 11.32 at Port Althorp and 27.1 at Idaho Inlet. Clam densities were lower in the Upper Arms of Glacier Bay, compared to the Lower Bay and were similar to densities at Port Althorp. In the Lower Bay, clam densities were nearly twice as high at preferred clam sites compared to those systematically sampled. Species of Macoma were the numerically dominant intertidal clam at most sites in Glacier Bay, while Protothaca staminea was dominant at Idaho Inlet and Port Althorp. Biomas (g/0.25m 2 ) was higher in the Lower Bay (23.5) than either Arm (2.1 and .91) and higher at preferred sites (73.4) than systematically selected sites in Glacier Bay. Biomass estimates at Port Althorp were 5.2 and 9.7 at Idaho Inlet. Biomass estimates were dominated by species of Saxidomus , Protothaca and Mya in Glacier Bay and by Protothaca and Saxidomus at Idaho Inlet and Port Althrop. We suspect differences in density and biomass relate to habitat differences between areas within Glacier Bay

Annual Report↗

USGS2009

Bat Rabies and Other Lyssavirus Infections

Bat Rabies and Other Lyssavirus Infections offers readers an overview of the virus variants that cause bat rabies, and geographical patterns in occurrence of this disease. The section Species Susceptibility describes infection rates and trends among bats, humans, and other animals. Disease Ecology considers the biological and environmental dynamics of the disease in various species of bats. Points to Ponder: Interspecies Interactions in Potential Bat Rabies Transmission Settings discusses the narrowing interface of bat colonies and human society and how humans and domestic animals play a role in transmission of bat rabies. Disease Prevention and Control outlines how to limit exposure to rabid bats and other animals. Appendixes include extensive tables of reported infections in bat species and in humans, and a glossary of technical terms is included. The author, Denny G. Constantine, helped define rabies infection in insect-eating bats and has investigated bat rabies ecology for more than half a century. He has authored more than 90 papers during the course of his career and is widely considered to be the world's foremost authority on the disease. Currently, Dr. Constantine is a public health officer emeritus and veterinary epidemiologist for the California Department of Health Services Viral and Rickettsial Disease Laboratory. Milt Friend, first director of the USGS National Wildlife Health Center, wrote the foreword. David Blehert, a USGS microbiologist who is investigating the emergence and causes of bat white-nose syndrome, edited the volume. Bat Rabies is intended for scholars and the general public. Dr. Constantine presents the material in a simple, straightforward manner that serves both audiences. The goal of the author is to increase people's understanding of both bat and disease ecology and also provide a balanced perspective on human risks pertaining to bat rabies.

Circular↗

USGS2007

ASTER-Derived 30-Meter-Resolution Digital Elevation Models of Afghanistan

INTRODUCTION The Advanced Spaceborne Thermal Emission and Reflection Radiometer (ASTER) is an imaging instrument aboard the Terra satellite, launched on December 19, 1999, as part of the National Aeronautics and Space Administration's (NASA) Earth Observing System (EOS). The ASTER sensor consists of three subsystems: the visible and near infrared (VNIR), the shortwave infrared (SWIR), and the thermal infrared (TIR), each with a different spatial resolution (VNIR, 15 meters; SWIR, 30 meters, TIR 90 meters). The VNIR system has the capability to generate along-track stereo images that can be used to create digital elevation models (DEMs) at 30-meter resolution. Currently, the only available DEM dataset for Afghanistan is the 90-meter-resolution Shuttle Radar Topography Mission (SRTM) data. This dataset is appropriate for macroscale DEM analysis and mapping. However, ASTER provides a low cost opportunity to generate higher resolution data. For this publication, study areas were identified around populated areas and areas where higher resolution elevation data were desired to assist in natural resource assessments. The higher resolution fidelity of these DEMs can also be used for other terrain analysis including landform classification and geologic structure analysis. For this publication, ASTER scenes were processed and mosaicked to generate 36 DEMs which were created and extracted using PCI Geomatics' OrthoEngine 3D Stereo software. The ASTER images were geographically registered to Landsat data with at least 15 accurate and well distributed ground control points with a root mean square error (RMSE) of less that one pixel (15 meters). An elevation value was then assigned to each ground control point by extracting the elevation from the 90-meter SRTM data. The 36 derived DEMs demonstrate that the software correlated on nearly flat surfaces and smooth slopes accurately. Larger errors occur in cloudy and snow-covered areas, lakes, areas with steep slopes, and southeastern-facing slopes. In these areas, holes, large pits, and spikes were generated by the software during the correlation process and the automatic interpolation method. To eliminate these problems, overlapping DEMs were generated and filtered using a progressive morphologic filter. The quadrangles used to delineate the DEMs in the publication were derived from the Afghan Geodesy and Cartography Head Office's (AGCHO) 1:100,000-scale maps series quadrangles. Each DEM was clipped and assigned a name according to the associated AGCHO quadrangle name. The geospatial data included in this publication are intended to be used with any GIS software packages including, but not limited to, ESRI's ArcGIS and ERDAS IMAGINE.

Data Series↗

USGS2008

Homage to Linnaeus: How many parasites? How many hosts?

Estimates of the total number of species that inhabit the Earth have increased significantly since Linnaeus's initial catalog of 20,000 species. The best recent estimates suggest that there are ≈6 million species. More emphasis has been placed on counts of free-living species than on parasitic species. We rectify this by quantifying the numbers and proportion of parasitic species. We estimate that there are between 75,000 and 300,000 helminth species parasitizing the vertebrates. We have no credible way of estimating how many parasitic protozoa, fungi, bacteria, and viruses exist. We estimate that between 3% and 5% of parasitic helminths are threatened with extinction in the next 50 to 100 years. Because patterns of parasite diversity do not clearly map onto patterns of host diversity, we can make very little prediction about geographical patterns of threat to parasites. If the threats reflect those experienced by avian hosts, then we expect climate change to be a major threat to the relatively small proportion of parasite diversity that lives in the polar and temperate regions, whereas habitat destruction will be the major threat to tropical parasite diversity. Recent studies of food webs suggest that ≈75% of the links in food webs involve a parasitic species; these links are vital for regulation of host abundance and potentially for reducing the impact of toxic pollutants. This implies that parasite extinctions may have unforeseen costs that impact the health and abundance of a large number of free-living species.

Proceedings of the National Academy of Sciences of↗

USGS2013

National Park Service Vegetation Inventory Program, Cuyahoga Valley National Park, Ohio

The National Park Service (NPS) Vegetation Inventory Program (VIP) is an effort to classify, describe, and map existing vegetation of national park units for the NPS Natural Resource Inventory and Monitoring (I&M) Program. The NPS VIP is managed by the NPS Biological Resources Management Division and provides baseline vegetation information to the NPS Natural Resource I&M Program. The U.S. Geological Survey (USGS) Vegetation Characterization Program lends a cooperative role in the NPS VIP. The USGS Upper Midwest Environmental Sciences Center, NatureServe, and NPS Cuyahoga Valley National Park (CUVA) have completed vegetation classification and mapping of CUVA. Mappers, ecologists, and botanists collaborated to identify and describe vegetation types within the National Vegetation Classification Standard (NVCS) and to determine how best to map them by using aerial imagery. The team collected data from 221 vegetation plots within CUVA to develop detailed descriptions of vegetation types. Data from 50 verification sites were also collected to test both the key to vegetation types and the application of vegetation types to a sample set of map polygons. Furthermore, data from 647 accuracy assessment (AA) sites were collected (of which 643 were used to test accuracy of the vegetation map layer). These data sets led to the identification of 45 vegetation types at the association level in the NVCS at CUVA. A total of 44 map classes were developed to map the vegetation and general land cover of CUVA, including the following: 29 map classes represent natural/semi-natural vegetation types in the NVCS, 12 map classes represent cultural vegetation (agricultural and developed) in the NVCS, and 3 map classes represent non-vegetation features (open-water bodies). Features were interpreted from viewing color-infrared digital aerial imagery dated October 2010 (during peak leaf-phenology change of trees) via digital onscreen three-dimensional stereoscopic workflow systems in geographic information systems (GIS). The interpreted data were digitally and spatially referenced, thus making the spatial database layers usable in GIS. Polygon units were mapped to either a 0.5 ha or 0.25 ha minimum mapping unit, depending on vegetation type. A geodatabase containing various feature-class layers and tables shows the locations of vegetation types and general land cover (vegetation map), vegetation plot samples, verification sites, AA sites, project boundary extent, and aerial photographic centers. The feature-class layer and relate tables for the CUVA vegetation map provides 4,640 polygons of detailed attribute data covering 13,288.4 ha, with an average polygon size of 2.9 ha. Summary reports generated from the vegetation map layer show map classes representing natural/semi-natural types in the NVCS apply to 4,151 polygons (89.4% of polygons) and cover 11,225.0 ha (84.5%) of the map extent. Of these polygons, the map layer shows CUVA to be 74.4% forest (9,888.8 ha), 2.5% shrubland (329.7 ha), and 7.6% herbaceous vegetation cover (1,006.5 ha). Map classes representing cultural types in the NVCS apply to 435 polygons (9.4% of polygons) and cover 1,825.7 ha (13.7%) of the map extent. Map classes representing non-NVCS units (open water) apply to 54 polygons (1.2% of polygons) and cover 237.7 ha (1.8%) of the map extent. A thematic AA study was conducted of map classes representing natural/semi-natural types in the NVCS. Results present an overall accuracy of 80.7% (kappa index of 79.5%) based on data from 643 of the 647 AA sites. Most individual map-class themes exceed the NPS VIP standard of 80% with a 90% confidence interval. The CUVA vegetation mapping project delivers many geospatial and vegetation data products in hardcopy and/or digital formats. These products consist of an in-depth project report discussing methods and results, which include descriptions and a dichotomous key to vegetation types, map classification and map-class descriptions, and a contingency table showing AA results. The suite of products also includes a database of vegetation plots, verification sites, and AA sites; digital pictures of field sites; field data sheets; aerial photographic imagery; hardcopy and digital maps; and a geodatabase of vegetation types and land cover (map layer), fieldwork locations (vegetation plots, verification sites, and AA sites), aerial photographic index, project boundary, and metadata. All geospatial products are projected in Universal Transverse Mercator, Zone 17, by using the North American Datum of 1983. Information on the NPS VIP and completed park mapping projects are located on the Internet at <http://science.nature.nps.gov/im/inventory/veg> and <http://www.usgs.gov/core_science_systems/csas/vip/index.html>.

Natural Resource Technical Report↗

USGS2017

Five hydrologic and landscape databases for selected National Wildlife Refuges in the Southeastern United States

This report serves as metadata and a user guide for five out of six hydrologic and landscape databases developed by the U.S. Geological Survey, in cooperation with the U.S. Fish and Wildlife Service, to describe data-collection, data-reduction, and data-analysis methods used to construct the databases and provides statistical and graphical descriptions of the databases. Six hydrologic and landscape databases were developed: (1) the Cache River and White River National Wildlife Refuges (NWRs) and contributing watersheds in Arkansas, Missouri, and Oklahoma, (2) the Cahaba River NWR and contributing watersheds in Alabama, (3) the Caloosahatchee and J.N. “Ding” Darling NWRs and contributing watersheds in Florida, (4) the Clarks River NWR and contributing watersheds in Kentucky, Tennessee, and Mississippi, (5) the Lower Suwannee NWR and contributing watersheds in Georgia and Florida, and (6) the Okefenokee NWR and contributing watersheds in Georgia and Florida. Each database is composed of a set of ASCII files, Microsoft Access files, and Microsoft Excel files. The databases were developed as an assessment and evaluation tool for use in examining NWR-specific hydrologic patterns and trends as related to water availability and water quality for NWR ecosystems, habitats, and target species. The databases include hydrologic time-series data, summary statistics on landscape and hydrologic time-series data, and hydroecological metrics that can be used to assess NWR hydrologic conditions and the availability of aquatic and riparian habitat. Landscape data that describe the NWR physiographic setting and the locations of hydrologic data-collection stations were compiled and mapped. Categories of landscape data include land cover, soil hydrologic characteristics, physiographic features, geographic and hydrographic boundaries, hydrographic features, and regional runoff estimates. The geographic extent of each database covers an area within which human activities, climatic variation, and hydrologic processes can potentially affect the hydrologic regime of the NWRs and adjacent areas. The hydrologic and landscape database for the Cache and White River NWRs and contributing watersheds in Arkansas, Missouri, and Oklahoma has been described and documented in detail (Buell and others, 2012). This report serves as a companion to the Buell and others (2012) report to describe and document the five subsequent hydrologic and landscape databases that were developed: Chapter A—the Cahaba River NWR and contributing watersheds in Alabama, Chapter B—the Caloosahatchee and J.N. “Ding” Darling NWRs and contributing watersheds in Florida, Chapter C—the Clarks River NWR and contributing watersheds in Kentucky, Tennessee, and Mississippi, Chapter D—the Lower Suwannee NWR and contributing watersheds in Georgia and Florida, and Chapter E—the Okefenokee NWR and contributing watersheds in Georgia and Florida.

Alabama, Arkansas, Florida, Georgia, Kentucky, Mis↗

USGS2011

Adapting generalization tools to physiographic diversity for the united states national hydrography dataset

This paper reports on generalization and data modeling to create reduced scale versions of the National Hydrographic Dataset (NHD) for dissemination through The National Map, the primary data delivery portal for USGS. Our approach distinguishes local differences in physiographic factors, to demonstrate that knowledge about varying terrain (mountainous, hilly or flat) and varying climate (dry or humid) can support decisions about algorithms, parameters, and processing sequences to create generalized, smaller scale data versions which preserve distinct hydrographic patterns in these regions. We work with multiple subbasins of the NHD that provide a range of terrain and climate characteristics. Specifically tailored generalization sequences are used to create simplified versions of the high resolution data, which was compiled for 1:24,000 scale mapping. Results are evaluated cartographically and metrically against a medium resolution benchmark version compiled for 1:100,000, developing coefficients of linear and areal correspondence.

Cartography and Geographic Information Science↗

USGS2015

Estimation of unaltered daily mean streamflow at ungaged streams of New York, excluding Long Island, water years 1961-2010

The lakes, rivers, and streams of New York State provide an essential water resource for the State. The information provided by time series hydrologic data is essential to understanding ways to promote healthy instream ecology and to strengthen the scientific basis for sound water management decision making in New York. The U.S. Geological Survey, in cooperation with The Nature Conservancy and the New York State Energy Research and Development Authority, has developed the New York Streamflow Estimation Tool to estimate a daily mean hydrograph for the period from October 1, 1960, to September 30, 2010, at ungaged locations across the State. The New York Streamflow Estimation Tool produces a complete estimated daily mean time series from which daily flow statistics can be estimated. In addition, the New York Streamflow Estimation Tool provides a means for quantitative flow assessments at ungaged locations that can be used to address the objectives of the Clean Water Act—to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters. The New York Streamflow Estimation Tool uses data from the U.S. Geological Survey streamflow network for selected streamgages in New York (excluding Long Island) and surrounding States with shared hydrologic boundaries, and physical and climate basin characteristics to estimate the natural unaltered streamflow at ungaged stream locations. The unaltered streamflow is representative of flows that are minimally altered by regulation, diversion, or mining, and other anthropogenic activities. With the streamflow network data, flow-duration exceedance probability equations were developed to estimate unaltered streamflow exceedance probabilities at an ungaged location using a methodology that equates streamflow as a percentile from a flow-duration curve for a particular day at a hydrologically similar reference streamgage with streamflow as a percentile from the flow-duration curve for the same day at an ungaged location. The reference streamgage is selected using map correlation, a geostatistical method in which variogram models are developed that correlate streamflow at one streamgage with streamflows at all other locations in the study area. Regression equations used to predict 17 flow-duration exceedance probabilities were developed to estimate the flow-duration curves at ungaged locations for New York using geographic information system-derived basin characteristics. A graphical user interface, with an integrated spreadsheet summary report, has been developed to estimate and display the daily mean streamflows and statistics and to evaluate different water management or water withdrawal scenarios with the estimated monthly data. This package of regression equations, U.S. Geological Survey streamgage data, and spreadsheet application produces an interactive tool to estimate an unaltered daily streamflow hydrograph and streamflow statistics at ungaged sites in New York. Among other uses, the New York Streamflow Estimation Tool can assist water managers with permitting water withdrawals, implementing habitat protection, estimating contaminant loads, or determining the potential affect from chemical spills.

New York↗

USGS2013

Developing standards for a national spatial data infrastructure

The concept of a framework for data and information linkages among producers and users, known as a National Spatial Data Infrastructure (NSDI), is built upon four corners: data, technology, institutions, and standards. Standards are paramount to increase the efficiency and effectiveness of the NSDI. Historically, data standards and specifications have been developed with a very limited scope - they were parochial, and even competitive in nature, and promoted the sharing of data and information within only a small community at the expense of more open sharing across many communities. Today, an approach is needed to grow and evolve standards to support open systems and provide consistency and uniformity among data producers. There are several significant ongoing activities in geospatial data standards: transfer or exchange, metadata, and data content. In addition, standards in other areas are under discussion, including data quality, data models, and data collection.

Cartography and Geographic Information Systems↗