SEARCH · USGS Science

Results for “Fishes”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,279 records · Page 71Linked to original sources

USGS2001

Source identification and fish exposure for polychlorinated biphenyls using congener analysis from passive water samplers in the Millers River basin, Massachusetts

Measurements of elevated concentrations of polychlorinated biphenyls (PCBs) in fish and in streambed sediments of the Millers River Basin, Massachusetts and New Hampshire, have been reported without evidence of the PCB source. In 1999, an investigation was initiated to determine the source(s) of the elevated PCB concentrations observed in fish and to establish the extent of fish exposure to PCBs along the entire main stems of the Millers River and one of its tributaries, the Otter River. Passive samplers deployed for 2-week intervals in the water-column at 3 1 stations, during summer and fall 1999, were used to assess PCB concentrations in the Millers River Basin. The samplers concentrate PCBs, which diffuse from the water column through a polyethylene membrane to hexane (0.200 liters) contained inside the samplers. Only dissolved PCBs (likely equivalent to the bioavailable fraction) are subject to diffusion through the membrane. The summed concentrations of all targeted PCB congeners (summed PCB) retrieved from the samplers ranged from 1 to 8,000 nanograms per hexane sample. Concentration and congener-pattern comparisons indicated that the historical release of PCBs in the Millers River Basin likely occurred on the Otter River at the upstream margin of Baldwinville, Mass. Elevated water-column concentrations measured in a wetland reach on the Otter River downstream from Baldwinville were compatible with a conceptual model for a present-day (1999) source in streambed sediments, to which the PCBs partitioned after their original introduction into the Otter River and from which PCBs are released to the water now that the original discharge has ceased or greatly decreased. Two four-fold decreases in summed PCB concentrations in the Millers River, by comparison with the highest concentration on the Otter River, likely were caused by (1) dilution with water from the relatively uncontaminated upstream Millers River and (2) volatilization of PCBs from the Millers River in steep-gradient reaches. A relatively constant concentration of summed PCBs in the reach of the Millers River from river mile 20 to river mile 10 was likely a consequence of a balance between decreased volatilization rates in that relatively low-gradient reach and resupply of PCBs to the water column from contaminated streambed sediments. A second high-gradient reach from river mile 10 to the confluence of the Millers River with the Connecticut River also was associated with a decrease in concentration of water-column summed PCBs. Volatilization as a loss mechanism was supported by evidence in the form of slight changes of the congener pattern in the reaches where decreases occurred. Exposure of fish food webs to concentrations of dissolved PCBs exceeded the U.S. Environmental Protection Agency's water-quality criterion for PCBs throughout most of the Millers River and Otter River main stems. Because the apparent source of PCBs discharged was upstream on the Otter River, a large number of river miles downstream (more than 30 mi) had summer water-column PCB concentrations that would likely lead to high concentrations of PCBs in fish.

Water-Resources Investigations Report↗

USGS2001

Comparison of U.S. Geological Survey and Ohio Environmental Protection Agency fish-collection methods using the index of biotic integrity and modified index of well-being, 1996–97

The U.S. Geological Survey (USGS) and Ohio Environmental Protection Agency (OEPA) collected data on fish from 10 stream sites in 1996 and 3 stream sites in 1997 as part of a comparative study of fish community assessment methods. The sites sampled represent a wide range of basin sizes (ranging from 132–6,330 square kilometers) and surrounding land-use types (urban, agricultural, and mixed). Each agency used its own fish-sampling protocol. Using the Index of Biotic Integrity and Modified Index of Well-Being, differences between data sets were tested for significance by means of the Wilcoxon signed-ranks test ( α = 0.05). Results showed that the median of Index of Biotic Integrity differences between data sets was not significantly different from zero ( p = 0.2521); however, the same statistical test showed the median differences in the Modified Index of Well-Being scores to be significantly different from zero ( p = 0.0158). The differences observed in the Index of Biotic Integrity scores are likely due to natural variability, increased variability at sites with degraded water quality, differences in sampling methods, and low-end adjustments in the Index of Biotic Integrity calculation when fewer than 50 fish were collected. The Modified Index ofWell-Being scores calculated by OEPA were significantly higher than those calculated by the USGS. This finding was attributed to the comparatively large numbers and biomass of fish collected by the OEPA. By combining the two indices and viewing them in terms of the percentage attainment of Ohio Warmwater Habitat criteria, the two agencies’ data seemed comparable, although the Index of Biotic Integrity scores were more similar than the Modified Index of Well-Being scores.

Michigan, New York, Ohio, Pennsylvania↗

USGS2003

Trends in concentrations of polychlorinated biphenyls in fish tissue from selected sites in the Delaware River basin in New Jersey, New York, and Pennsylvania, 1969-98

Polychlorinated biphenyl (PCB) concentrations in fish tissue collected during the 1990's from selected sites in the Delaware River Basin were compared with concentrations in fish tissue collected during 1969-88. Data collected by State and Federal agencies on concentrations in whole-body common carp ( Cyprinus carpio ) and white sucker ( Catostomus commersoni ), and edible portions of American eel ( Anguilla rostrata ), smallmouth bass ( Micropterus dolomieu ), and channel catfish ( Ictalurus punctatus ) during 1969-98 were compiled to define temporal trends in concentrations of PCBs in fish tissue from selected segments of the Delaware River, Lehigh River, Schuylkill River, and Brandywine Creek. The Delaware River in the vicinity of Trenton, New Jersey and Yardley, Pennsylvania (above the tidal influence) had the largest long-term data set among the sites considered for this study and was the only site with sufficient data for statistical analysis. A general pattern of decline in PCB concentrations during 1969-98 was apparent for this river segment. PCB concentrations in whole-body white sucker from this lower Delaware River segment declined during 1969-98 from a highest concentration of 7 micrograms per gram ( μ g/g, wet weight) in a sample collected during 1972 to 0.26 μ g/g (wet weight) in a sample collected during 1998. PCB concentration was negatively correlated with year (Spearman rank correlation -0.46, p < 0.08, n = 15); especially after removal of a sample from 1977 with an unusually low concentration (Spearman rank correlation -0.53, p = 0.05, n = 14). PCB concentrations in edible flesh of American eel declined during 1975-95, from a highest concentration of 3.8 μ g/g (wet weight) in a sample collected during 1976 to less than the reporting limit of 0.26 μ g/g (wet weight) in samples collected during 1993 and 1995. PCB concentrations in most samples (for species considered in this study) collected from the lower Delaware River exceeded the National Academy of Sciences and National Academy of Engineering (NAS/NAE) wildlife guideline level of 0.5 μ g/g during the 1970's and 1980's, and decreased to below this level during the 1990's. No samples of edible portions of game fish exceeded the U.S. Food and Drug Administration (FDA) tolerance level by the mid 1980's. However, the PCB concentration in a smallmouth bass fillet sample that was collected during 1998 (0.37 μ g/g) exceeded the Pennsylvania fish-consumption advisory level of 0.06 μ g/g, and the concentrations in whole-body common carp and white sucker collected during 1998 (1.10 μ g/g and 0.26 μ g/g, respectively) exceeded the New York State Department of Environmental Conservation wildlife criterion concentration of 0.11 μ g/g. (The concentration in carp also exceeded the 1973 NAS/NAE wildlife guideline concentration of 0.5 μ g/g.) Graphical analysis of PCB concentrations in whole white sucker and (or) edible portions of American eel from the upper Delaware River, lower Delaware River, middle Schuylkill River, and Brandywine Creek indicate a decline from the 1970's and (or) 1980's to the middle to late 1990's. Temporal trends in PCB concentrations in white sucker samples from the lower Lehigh and Schuylkill Rivers during 1979-98 are less clear; the PCB concentration (wet-weight basis) from a sample collected in 1998 from the lower Lehigh River was similar to that from a sample collected in 1979, and concentrations actually increased during 1982-98. Similarly, PCB concentrations in samples of white sucker and American eel from the lower Schuylkill River were highly variable over time.

New Jersey, New York, Pennsylvania↗

USGS2002

Effects of urbanization and long-term rainfall on the occurrence of organic compounds and trace elements in reservoir sediment cores, streambed sediment, and fish tissue from the Santa Ana River basin, California, 1998

Organcochlorine compounds, semivolatile-organic compounds (SVOC), and trace elements were analyzed in reservoir sediment cores, streambed sediment, and fish tissue in the Santa Ana River Basin as part of the U.S. Geological Survey's National Water-Quality Assessment Program. Three reservoirs were sampled in areas that have different degrees of urbanization. Streambed sediment and fish tissue collected at 12 sites were divided into two groups, urban and nonurban. More organochlorine compounds were detected in reservoir sediment cores, streambed sediment and fish tissue, and at higher concentrations at urban sites than at nonurban sites. At all sites, except West Street Basin, concentrations of organochlorine compounds were lower than the probable-effect concentration (PEC). At the highly urbanized West Street Basin, chlordane and p,p'-DDE exceeded the PEC throughout the historical record. The less stringent threshold-effect concentration (TEC) was exceeded for six compounds at eight sites. Most of the organochlorine compounds detected in streambed sediment and fish tissue were at urban sites on the Santa Ana River as opposed to its tributaries, suggesting accumulation and persistence in the river. More SVOCs were detected in reservoir sediment cores and streambed sediment, and at higher concentrations, at urban sites than at nonurban sites. At all the sites, except West Street Basin, concentrations of SVOCs were lower than the PEC. At West Street Basin, chrysene, pyrene, and total polycyclic-aromatic hydrocarbons exceeded the PEC throughout the historical record. The TEC was exceeded for 10 compounds at 3 sites. Most of the SVOCs were detected in streambed sediment at urban sites on tributaries to the Santa Ana River rather than the mainstem itself. The less frequent occurrence and lower concentrations in the Santa Ana River suggest that SVOCs are less persistent than organochlorine compounds, possibly as a result of volatization, gradation, or dilution. Most trace-element detections in reservoir sediment cores and streambed sediment were at urban sites, and the concentrations were generally higher than at nonurban sites. Lead and zinc exceeded their PECs at West Street Basin throughout the historical record; copper exceeded its PEC at Canyon Lake, an area of urban growth. The TEC was exceeded for 10 compounds at 11 sites. Frequency of detection and concentration did not differ between tributary and Santa Ana River sites, which may be attributed to the fact that trace elements occur naturally. Four trace elements (arsenic, copper, mercury, and selenium) had higher concentrations in fish tissue at nonurban sites than at urban sites. Concentrations decreased over time for organochlorine compounds at all three reservoirs, probably a result of the discontinued use of many of the compounds. Decreasing trends in SVOCs and trace elements were observed at West Street Basin, but increasing trends were observed at Canyon Lake. Concentrations of organochlorine compounds, SVOCs, and trace elements were higher during periods of above average rainfall at both West Street Basin and Canyon Lake.

Water-Resources Investigations Report↗

USGS2001

Water-Quality Assessment of part of the Upper Mississippi River Basin, Minnesota and Wisconsin— Organochlorine compounds in streambed sediment and fish tissues, 1995-97

Streambed sediments and fish tissues were collected in part of the Upper Mississippi River Basin to assess the presence and distribution of organochlorine compounds (OCs) including PCBs. A total of 13 OCs were detected among 14 of 27 streambed sediment sampling locations. In fish tissues analyzed, 9 OCs were detected among 17 of 24 sites sampled. Eight OCs were detected in both fish and streambed sediment samples, they were: cis-chlordane, o,p'-DDD; p,p'-DDD; p,p'-DDE; p,p'-DDT; hexachlorobenzene; transnonachlor; and PCBs. The most frequently detected OCs were: p,p'-DDE; and p,p'-DDD in streambed sediment and p,p'-DDE and PCBs in fish tissues. No OCs were detected in streambed sediment at agricultural sites; however, the agricultural sites had 17 detections of OCs in fish tissue. Urban streams had concentrations of total DDT and metabolites in streambed sediment that exceed guidelines for classification of sites with high probabilities of adverse effects to aquatic organisms. Total DDT was the only OC within an urban land use that exceeded guidelines for piscivorous wildlife.

Minnesota, Wisconsin↗

USGS1995

Aquatic communities and contaminants in fish from streams of the Red River of the North basin, Minnesota and North Dakota

Available data on the ecology of aquatic organisms in the Red River of the North Basin, a study unit of the U.S. Geological Survey's National Water-Quality Assessment program, were collated from numerous sources. Lack of information for invertebrates and algae precluded a general summary of distribution and ecology throughout the basin. Data on fish species distributions in the major streams of the Red River of the North Basin were analyzed based on the drainage area of the stream and the number of ecoregions the stream flowed through. Species richness increased with both drainage area (log drainage area in square kilometers, R 2 =0.41, p=0.0055) and the number of ecoregions a river flowed through. However, theses two factors are autocorrelated because the larger the drainage, the more likely that the river will flow through more than one ecoregion. A cluster analysis identified five river groups based on similarity of species within the fish community. Analysis of trophic and taxonomic composition provided justification for the cluster groups. There were significant differences (p=0.05) in the trophic composition of the river cluster groups with respect to the number of predator species, omnivore species, benthic insectivore species, and general insectivore species. Although there were no significant differences in the number of species in the bass and sunfish family or the sucker family, the number of species in the minnow family and the darter subfamily were different (p=0.05) among the groups identified by cluster analysis. Data on contaminant concentrations in fish from the Red River of the North indicated that most trace elements and organochlorine compounds present in tissues were not at levels toxic to fish or humans. Minnesota and North Dakota have issued a fish consumption advisory based on levels of mercury and (or) PCBs found in some species.

Minnesota, North Dakota, South Dakota↗

USGS1997

Fish communities of benchmark streams in agricultural areas of eastern Wisconsin

Fish communities were surveyed at 20 stream sites in agricultural areas in eastern Wisconsin in 1993 and 1995 as part of the National Water-Quality Assessment (NAWQA) Program. These streams, designated "benchmark streams," were selected for study because of their potential use as regional references for healthy streams in agricultural areas, based on aquatic communities, habitat, and water chemistry. The agricultural benchmark streams were selected from four physical settings, or relatively homogeneous units (RHU's), that differ in bedrock type, texture of surficial deposits, and land use. Additional data were collected along with the fish-community data, including measures of habitat, water chemistry, and population surveys of algae and benthic invertebrates. Of the 20 sites, 19 are classified as trout (salmonid) streams. Fish species that require cold or cool water were the most commonly collected. At least one species of trout was collected at 18 sites, and trout were the most abundant species at 13 sites. The species with the greatest collective abundance, and collected at 18 of the 20 sites, were mottled sculpin (Cottus bairdi), a coldwater species. The next most abundant species were brown trout (Salmo trutta), followed by brook trout (Salvelinusfontinalis), creek chub (Semotilus atromaculatus), and longnose dace (Rhinichthys cataractae). In all, 31 species of fish were collected. The number of species per stream ranged from 2 to 14, and the number of individuals collected ranged from 19 to 264. According to Index of Biotic Integrity (IBI) scores, 5 sites were rated excellent, 10 sites rated good, 4 rated fair, and 1 rated poor. The ratings of the five sites in the fair to poor range were low for various reasons. Two sites appeared to have more warmwater species than was ideal for a high-quality coldwater stream. One was sampled during high flow and the results may not be valid for periods of normal flow; the other may have been populated by migrating warmwater species. Two sites had insufficient deep-water habitat to support large numbers offish, especially top carnivores. Finally, one stream may be too cool to support enough warmwater species and too warm to support trout. In general, two methods of evaluating site habitat indicate that habitat is not a limiting factor for fish communities. However, two sites were rated as fair according to both habitat evaluation methods due to low base flow. Two sites rated below good according to one habitat evaluation method but rated good or excellent according to the other. Detrended correspondence analysis (DCA) of data for 17 sites showed three station groupings. These groupings fell along RHU divisions and each group was associated with one of three trout species. A species-richness gradient was evident on the station-ordination diagram. Intolerant species were associated with each grouping, a reflection of the generally high water quality at the sites. However, no significant differences were found between IBI scores or habitat indices among the site groupings. The DCA axis 1 and 2 scores correlated with average velocity and percent pool as well as RHU factors percent sandy surficial deposits, percent wetland, percent agriculture, and bedrock. Average velocity was highest at three sites which also had among the highest measured flow and largest drainage areas. Percent pool was generally lower at sites with smaller percentages of sandy surficial deposits, with one exception. The usefulness of ordination methods in conjunction with more traditional methods of defining biotic integrity (IB I) has been noted in previous studies. In this study, however, perhaps because of the relative homogeneity of the benchmark streams, the IBI did not correlate with the same kinds of factors as the DCA axis scores did.

Wisconsin↗

USGS2012

Heterogeneous detection probabilities for imperiled Missouri River fishes: implications for large-river monitoring programs

Occupancy modeling was used to determine (1) if detection probabilities (p) for 7 regionally imperiled Missouri River fishes (Scaphirhynchus albus, Scaphirhynchus platorynchus, Cycleptus elongatus, Sander canadensis, Macrhybopsis aestivalis, Macrhybopsis gelida, and Macrhybopsis meeki) differed among gear types (i.e. stationary gill nets, drifted trammel nets, and otter trawls), and (2) how detection probabilities were affected by habitat (i.e. pool, bar, and open water), longitudinal position (five 189 to 367 rkm long segments), sampling year (2003 to 2006), and season (July 1 to October 30 and October 31 to June 30). Adult, large-bodied fishes were best detected with gill nets (p: 0.02–0.74), but most juvenile large-bodied and all small-bodied species were best detected with otter trawls (p: 0.02–0.58). Trammel nets may be a redundant sampling gear for imperiled fishes in the lower Missouri River because most species had greater detection probabilities with gill nets or otter trawls. Detection probabilities varied with river segment for S. platorynchus, C. elongatus, and all small-bodied fishes, suggesting that changes in habitat influenced gear efficiency or abundance changes among river segments. Detection probabilities varied by habitat for adult S. albus and S. canadensis, year for juvenile S. albus, C. elongatus, and S. canadensis, and season for adult S. albus. Concentrating sampling effort on gears with the greatest detection probabilities may increase species detections to better monitor a population's response to environmental change and the effects of management actions on large-river fishes.

Endangered Species Research↗

USGS2003

Mobile fishing gear reduces benthic megafaunal production on Georges Bank

This study addresses the effect of mobile fishing gear disturbance on benthic megafaunal production on the gravel pavement of northern Georges Bank. From 1994 to 2000, we sampled benthic megafauna with a 1 m Naturalists' dredge at shallow (47 to 62 m) and deep (80 to 90 m) sites. The cessation of fishing in large areas of Georges Bank in January 1995 allowed us to monitor changes in production at a previously disturbed site. Production at a shallow disturbed site varied little over the sampling period (32 to 57 kcal m-2 yr-1) and was markedly lower than production at the nearby recovering site, where production increased from 17 kcal m-2yr -1 in 1994 before the closure to 215 kcal m-2 yr -1 in 2000. Atlantic sea scallops Placopecten magellanicus and green sea urchins Strongylocentrotus droebachiensis dominated production at the recovering site. The community production:biomass ratio decreased over time at the recovering site as the sea scallop population matured. At the deep sites, production remained significantly higher at undisturbed sites (174 to 256 kcal m-2 yr-1) than at disturbed sites (30 to 52 kcal m -2 yr-1). The soft-bodied tube-building polychaete Thelepus cincinnatus dominated production at the undisturbed site, while hard-shelled bivalve molluscs Astarte spp. and P. magellanicus were prevalent at the disturbed site. Mobile fishing gear disturbance has a conspicuous effect on benthic megafaunal production in this hard-bottom habitat. Cessation of mobile fishing has resulted in a marked increase in benthic megafaunal production. These findings should help fishery managers to gauge the costs and benefits of management tools such as area closures and low-impact fishing gears.

Georges Banks↗

USGS2021

Reconnecting the Elwha River: Spatial patterns of fish response to dam removal

The removal of two large dams on the Elwha River was completed in 2014 with a goal of restoring anadromous salmonid populations. Using observations from ongoing field studies, we compiled a timeline of migratory fish passage upstream of each dam. We also used spatially continuous snorkeling surveys in consecutive years before (2007, 2008) and after (2018, 2019) dam removal during summer baseflow to assess changes in fish distribution and density over 65 km of the mainstem Elwha River. Before dam removal, anadromous fishes were limited to the 7.9 km section of river downstream of Elwha Dam, potamodromous species could not migrate throughout the river system, and resident trout were the most abundant species. After dam removal, there was rapid passage into areas upstream of Elwha Dam, with 8 anadromous species (Chinook, Coho, Sockeye, Pink, Chum, Winter Steelhead, Summer Steelhead, Pacific Lamprey, and Bull Trout) observed within 2.5 years. All of these runs except Chum Salmon were also observed in upper Elwha upstream of Glines Canyon Dam within 5 years. The spatial extent of fish passage by adult Chinook Salmon and Summer Steelhead increased by 50 km and 60 km, respectively, after dam removal. Adult Chinook Salmon densities in some previously inaccessible reaches in the middle section of the river exceeded the highest densities observed in the lower section of the river prior to dam removal. The large number (>100) of adult Summer Steelhead in the upper river after dam removal was notable because it was among the rarest anadromous species in the Elwha River prior to dam removal. The spatial extent of trout and Bull Trout remained unchanged after dam removal, but their total abundance increased and their highest densities shifted from the lower 25 km of the river to the upper 40 km. Our results show that reconnecting the Elwha River through dam removal provided fish access to portions of the watershed that had been blocked for nearly a century.

Washington↗

USGS2023

Seven dam challenges for migratory fish: Insights from the Penobscot River

More than a century of impoundments in the Penobscot River, Maine, USA, has contributed to population declines in migratory fish in the system. A decade of change, research, and monitoring has revealed direct and indirect ways that dams have influenced the river habitat, connectivity for migratory fish, and the food web. The removal of two main-stem dams (in 2012 and 2013) and bolstering of fish passage have been part of coordinated restoration efforts in the watershed. Integral to this undertaking was support for short- and long-term monitoring and research that included physical habitat, fish passage, and broad scale ecological assessments. Herein we discuss the seven interconnected and complex ways that dams have affected the Penobscot River ecosystem, particularly for migratory fish. These include familiar influences ascribed to dams: i) impaired access to habitat, ii) injury and mortality, and iii) delays of migration. Other ecological influences are less studied and more subtle: iv) facilitation of predation, v) community shifts, and vi) demographic shifts. Lastly, dams result in vii) a loss of ecosystem services that would otherwise be intact in an unimpounded system. We draw on both direct examples from the Penobscot River and broader information to characterize how impoundments have transformed this ecosystem for more than a century. Recent dam removals and mitigation efforts have reestablished some of these ecological functions.

Maine↗

USGS2023

Fish life-history traits predict abundance-occupancy patterns in artificial lakes

Life-history traits of a species have been postulated as a factor in abundance and occupancy patterns. Understanding how traits contribute to the ubiquity and rarity of taxa can facilitate the development of effective conservation policy by establishing a connection between species requirements and resource. The goal was to evaluate fish assemblages in artificial lakes for evidence of the abundance-occupancy patterns reported in natural environments and, if evident, to explore if observed patterns of abundance and occupancy could be attributed to species traits. Fish abundance and occupancy were estimated over 1990–2018 in 22 artificial lakes impounded within the Tennessee River basin, USA. Consistent with reports for many other taxonomic groups in natural environments, there was a positive association amidst 114 fish species between abundance and occupancy in artificial lakes ( R 2 = 0.78). This result indicates that the fish assemblages that develop in these anthropized environments follow the fundamental abundance-occupancy patterns uncovered in natural environments, despite assemblages having been disfigured by the dramatic rearrangement of habitats brought by impoundment. Moreover, a redundancy analysis focusing mostly on reproductive and habitat traits adequately predicted abundance-occupancy patterns of fish assemblages in artificial lakes ( R 2 = 0.69). Species abundance-occupancy is influenced by the interplay between life-history traits and habitat availability, even in artificial lakes, and by extension, possibly other artificial ecosystems.

Alabame, Georgia, Kentucky, Mississippi, North Car↗

USGS2012

Immunity to fish rhabdoviruses

Members of the family Rhabdoviridae are single-stranded RNA viruses and globally important pathogens of wild and cultured fish and thus relatively well studied in their respective hosts or other model systems. Here, we review the protective immune mechanisms that fish mount in response to rhabdovirus infections. Teleost fish possess the principal components of innate and adaptive immunity found in other vertebrates. Neutralizing antibodies are critical for long-term protection from fish rhabdoviruses, but several studies also indicate a role for cell-mediated immunity. Survival of acute rhabdoviral infection is also dependent on innate immunity, particularly the interferon (IFN) system that is rapidly induced in response to infection. Paradoxically, rhabdoviruses are sensitive to the effects of IFN but virulent rhabdoviruses can continue to replicate owing to the abilities of the matrix (M) protein to mediate host-cell shutoff and the non-virion (NV) protein to subvert programmed cell death and suppress functional IFN. While many basic features of the fish immune response to rhabdovirus infections are becoming better understood, much less is known about how factors in the environment affect the ecology of rhabdovirus infections in natural populations of aquatic animals.

Viruses↗

USGS2023

Antimycin A species sensitivity distribution: Perspectives for non-indigenous fish control

The global transfer of aquatic biota outside their native geographical range has resulted in dramatic changes to biological communities. Many nonnative species introductions are facilitated by human activity and then spread intra-continentally through connected watersheds once established. Resource managers therefore utilize multiple control technologies, such as management chemicals, for fisheries management to remove non-indigenous fishes. Antimycin-A (ANT-A) is a management chemical, previously registered in the United States, that has been extensively studied and used to control non-indigenous fishes. The present study examines ANT-A species sensitivity among fish and aquatic invertebrates and summarizes factors that influence toxicity. ANT-A species sensitivity distributions 20th percentile hazard concentrations (HC20) for acute studies ≤ 24 h demonstrated fish (0.088 µg/L) are 174-fold more sensitive to ANT-A than invertebrates (15.35 µg/L). Similar to previous reports, toxicity was demonstrated to be influenced by water pH, temperature, and fish mass. Therefore, the present study and results characterize ANT-A toxicity for aquatic resource managers and future use in fisheries management.

Management of Biological Invasions↗

USGS2017

The thermal regime and species composition of fish and invertebrates in Kelly Warm Spring, Grand Teton National Park, Wyoming

We evaluated the thermal regime and relative abundance of native and nonnative fish and invertebrates within Kelly Warm Spring and Savage Ditch, Grand Teton National Park, Wyoming. Water temperatures within the system remained relatively warm year-round with mean temperatures >20 °C near the spring source and >5 °C approximately 2 km downstream of the source. A total of 7 nonnative species were collected: Convict/Zebra Cichlid ( Cichlasoma nigrofasciatum ), Green Swordtail ( Xiphophorus hellerii ), Tadpole Madtom ( Noturus gyrinus ), Guppy ( Poecilia reticulata ), Goldfish ( Carassius auratus ), red-rimmed melania snail ( Melanoides tuberculata ), and American bullfrog tadpoles ( Lithobates catesbeianus ). Nonnative fish (Zebra Cichlids and Green Swordtails), red-rimmed melania snails, and bullfrog tadpoles dominated the upper 2 km of the system. Abundance estimates of the Zebra Cichlid exceeded 12,000 fish/km immediately downstream of the spring source. Relative abundance of native species increased movingdownstream as water temperatures attenuated with distance from the thermally warmed spring source; however, nonnative species were captured 4 km downstream from the spring. Fish diseases were prevalent in both native and nonnative fish from the Kelly Warm Spring pond. Clinostomum marginatum, a trematode parasite, was found in native species samples, and the tapeworm Diphyllobothrium dendriticum was present in samples from nonnative species. Diphyllobothrium dendriticum is rare in Wyoming. Salmonella spp. were also found in some samples of nonnative species. These bacteria are associated with aquarium fish and aquaculture and are generally not found in the wild.

Wyoming↗

USGS2018

Necropsy-based wild fish health assessment

Anthropogenic influences from increased nutrients and chemical contaminants, to habitat alterations and climate change, can have significant effects on fish populations. Adverse effects monitoring, utilizing biomarkers from the organismal to the molecular level, can be used to assess the cumulative effects on fishes and other organisms. Fish health has been used worldwide as an indicator of aquatic ecosystem health. The necropsy-based fish health assessment provides data on visible abnormalities and lesions, parasites, condition and organosomatic indices. These can be compared by site, season and sex, as well as temporally, to document change over time. Severity ratings can be assigned to various observations to calculate a fish health index for more quantitative assessment. A drawback of the necropsy-based assessment is that it is based on visual observations and condition factors, which are not as sensitive as tissue and subcellular biomarkers for sublethal effects. Additionally, it is rarely possible to identify causes or risk factors associated with observed abnormalities. So, for instance a raised lesion or "tumor" on the fins, lips or body surface may be a neoplasm. However, it could also be a response to a parasite, chronic inflammation or hyperplasia of normal cells in response to an irritant. Conversely, neoplasms, certain parasites, other infectious agents and many tissue changes are not visible and so may be underestimated. However, during the necropsy-based assessment, blood (plasma), tissues for histopathology (microscopic pathology), genomics and other molecular analyses, and otoliths for aging can be collected. These downstream analyses, together with geospatial analyses, habitat assessments, water quality and contaminant analyses can all be important in comprehensive ecosystem evaluations.

Journal of Visualized Experiments↗

USGS2013

Effects of summer drawdown on the fishes and larval chironomids in Beulah Reservoir, Oregon

Summer drawdown of Beulah Reservoir, Oregon, could adversely affect fish and invertebrate production, limit sport fishing opportunities, and hinder the recovery of threatened species. To assess the impacts of drawdown, we sampled fish and Chironomidae larvae in Beulah Reservoir in the springs of 2006 to 2008. The reservoir was reduced to 68% of full pool in 2006 and to run-of-river level in 2007. From spring 2006 to spring 2007, the catch per unit effort (CPUE) of fyke nets decreased significantly for dace [Rhinichthys spp.] and northern pikeminnow [Ptychocheilus oregonensis], increased significantly for suckers [Catastomus spp.] and white crappies [Pomoxis nigromaculatus], and was similar for redside shiners [Richardsonius balteatus]. CPUE of gillnets either increased significantly or remained similar depending on genera, and the size structure of redside shiners, suckers, and white crappies changed appreciably. From 2007 to 2008, the CPUE of northern pikeminnow, redside shiners, suckers, and white crappies decreased significantly depending on gear and the size structure of most fishes changed. Springtime densities of chironomid larvae in the water column were significantly higher in 2006 than in 2008, but other comparisons were similar. The densities of benthic chironomids were significantly lower in substrates that were frequently dewatered compared to areas that were partially or usually not dewatered. Individuals from frequently dewatered areas were significantly smaller than those from other areas and the densities of benthic chironomids in 2008 were significantly lower than other years. Summer drawdown can reduce the catch and alter the size structure of fishes and chironomid larvae in Beulah Reservoir.

Oregon↗

USGS1982

Some observations on the ecology and fish management of reservoirs in the United States

By 1980 there were 1,608 reservoirs (over 202 ha each) with a surface area of 4 million ha in the United States. Construction of new reservoirs has decreased in recent years because of the lack of suitable sites and the opposition of environmental interests. Reservoirs have characteristics of both lacustrine and riverine ecosystems. Reservoirs have been segmented into riverine, transitional and lacustrine zones for simulation modelling.Fish and plankton production increases rapidly after initial impoundment and then decreases and stabilizes at lower levels. Decreases in the number of fish species and in fish biomass following impoundment are caused by reduced quantity and quality of spawning and nursery habitat and decreased detrital input. Plankton populations can be followed downstream in a series of reservoirs and increases in abundance were associated with the inundation of vegetation or the introduction of nutrients.In addition to water level management, the most effective fish management programs have included introducing new fishes, developing vegetation or building structures on the reservoir bottom. Considerable progress has been made in predicting the effects of environmental parameters on fish production.

Montana, Nebraska, North Dakota, South Dakota↗