SEARCH · USGS Science

Results for “Estuaries”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,279 records · Page 71Linked to original sources

USGS1990

Arsenic in benthic bivalves of San Francisco Bay and the Sacramento/San Joaquin River Delta

Arsenic concentrations were determined in fine-grained, oxidized, surface sediments and in two benthic bivalves, Corbicula sp. and Macoma balthica , within San Francisco Bay, the Sacramento/San Joaquin River Delta, and selected rivers not influenced by urban or industrial activity. Arsenic concentrations in all samples were characteristic of values reported for uncontaminated estuaries. Small temporal fluctuations and low arsenic concentrations in bivalves and sediments suggest that most inputs of arsenic are likely to be minor and arsenic contamination is not widespread in the Bay.

California↗

USGS1996

Depositional controls on coal distribution and quality in the Eocene Brunner Coal Measures, Buller Coalfield, South Island, New Zealand

The Buller Coalfield on the West Coast of the South Island, New Zealand, contains the Eocene Brunner Coal Measures. The coal measures unconformably overlie Paleozoic-Cretaceous basement rocks and are conformably overlain by, and laterally interfinger with, the Eocene marine Kaiata Formation. This study examines the lithofacies frameworks of the coal measures in order to interpret their depositional environments. The lower part of the coal measures is dominated by conglomeratic lithofacies that rest on a basal erosional surface and thicken in paleovalleys incised into an undulating peneplain surface. These lithofacies are overlain by sandstone, mudstone and organic-rich lithofacies of the upper part of the coal measures. The main coal seam of the organic-rich lithofacies is thick (10-20 m), extensive, locally split, and locally absent. This seam and associated coal seams in the Buller Coalfield are of low- to high-volatile bituminous rank (vitrinite reflectance between 0.65% and 1.75%). The main seam contains a variable percentage of ash and sulphur. These values are related to the thickening and areal distribution of the seam, which in turn, were controlled by the nature of clastic deposition and peat-forming mire systems, marine transgression and local tidal incursion. The conglomeratic lithofacies represent deposits of trunk and tributary braided streams that rapidly aggraded incised paleovalleys during sea-level stillstands. The main seam represents a deposit of raised mires that initially developed as topogenous mires on abandoned margins of inactive braidbelts. Peat accumulated in mires as a response to a rise in the water table, probably initially due to gradual sea-level rise and climate, and the resulting raised topography served as protection from floods. The upper part of the coal measures consists of sandstone lithofacies of flu vial origin and bioturbated sandstone, mudstone and organic-rich lithofacies, which represent deposits of paralic (deltaic, barrier shoreface, tidal and mire) and marine environments. The fluvial sandstone lithofacies accumulated in channels during a sea-level stillstand. The channels were infilled by coeval braided and meandering streams prior to transgression. Continued transgression, ranging from tidal channel-estuarine incursions to widespread but uneven paleoshoreline encroachment, accompanied by moderate basin subsidence, is marked by a stacked, back-stepping geometry of bioturbated sandstone and marine mudstone lithofacies. Final retrogradation (sea-level highstand) is marked by backfilling of estuaries and by rapid landward deposition of the marine Kaiata Formation in the late Eocene.

International Journal of Coal Geology↗

USGS1985

Subtidal sea level and current variations in the northern reach of San Francisco Bay

Analyses of sea level and current-meter data using digital filters and a variety of statistical methods show a variety of phenomena related to non-local coastal forcing and local tidal forcing in the northern reach of San Francisco Bay, a partially mixed estuary. Low-frequency variations in sea level are dominated by non-local variations in coastal sea level and also show a smaller influence from tidally induced fortnightly sea level variations. Low-frequency currents demonstrate a gravitational circulation which is modified by changes in tidal-current speed over the spring-neap tidal cycle. Transients in gravitational circulation induce internal oscillations with periods of two to four days.

California↗

USGS1985

Increased benthic grazing: An alternative explanation for low phytoplankton biomass in northern San Francisco Bay during the 1976-1977 drought

Among the consequences of extremely low river flow into northern San Francisco Bay during a two-year drought were (1) a gradual increase in salinity, (2) an unusual decline in chlorophyll a concentration, and (3) the upstream migration of estuarine benthic invertebrates to the normally brackish area of the bay. Total abundance in the benthos at a shallow monitoring site increased from a normal 2000 to greater than 20 000 individuals m −2 during the summer of 1977, presumably in response to the increased salinity. Estimated filtration rates derived from equations in the literature for one of the species, the suspended-feeding bivalve Mya arenaria ranged from 1 to 4 m 3 m −2 day −1 during 1977 depending on abundance and mean size on sampling dates. Because water depth at this site is less than 2 m, Mya could have filtered all of the particles (including diatoms) from the water column on the order of once per day. Several other immigrant species undoubtedly contributed to the removal of particles from the near-bottom water as well. Increased benthic grazing, therefore, could have accounted for the anomalously low phytoplankton biomass observed during the drought. These results suggest that during periods of prolonged low river flow and increased salinity benthic food webs could become more important than planktonic food webs in the upper part of the estuary.

California↗

USGS1989

Spatial and temporal variability in South San Francisco Bay (USA). I. Horizontal distributions of salinity, suspended sediments, and phytoplankton biomass and productivity

The horizontal pattern of mesoscale (1–4 km) variability in salinity was a poor predictor of mesoscale patterns in chlorophyll a , suspended particulate matter, and daily primary productivity in the South San Francisco Bay estuary during spring 1987. The tidally-averaged salinity distribution varied over weekly time scales, reflecting inputs of freshwater as well as transport processes. Spatial distributions of the other quantities also varied weekly, but not in concert with the salt field. Spatial patterns of phytoplankton biomass (chlorophyll a ) deviated from the salinity patterns, largely reflecting in situ production of phytoplankton biomass during the spring bloom. The tidally-averaged distribution of suspended particulate matter (SPM) was highly dynamic and responded to (1) the riverine input of suspended sediment during a freshet, (2) neap-spring variations in tidally-driven resuspension, and (3) resuspension in shallows following a period of wind mixing. Two-dimensional distributions of primary productivity P ′, derived from maps of biomass and turbidity (SPM), also varied weekly, but the spatial variability of P ′ was only about half that of SPM and chlorophyll. Since the magnitude and patterns of spatial variability differ among nonconservative quantities, at least in part because of local sources and sinks, we conclude that the spatial distributions of nonconservative quantities cannot be predicted from distributions of conservative tracers, such as salinity.

California↗

USGS1991

Physiography, surficial sediments and Quaternary stratigraphy of the inner continental shelf and nearshore region of the Gulf of Maine

The western margin of the Gulf of Maine is a bedrock-framed, glaciated continental shelf that has only recently been geologically mapped. The bathymetry is divisible into four physiographic areas: nearshore basins, shelf valleys, rocky zones, and outer basins. The nearshore basins are largely floored by mud except near rock outcrops where shelly gravel occurs. Shelf valleys extend seaward from nearshore basins and estuaries and generally possess less sediment than nearshore basins. Abundant exposures of Pleistocene sediment with rippled substrates suggest that contemporary reworking is occurring. Rocky zones are the most abundant physiographic area and include both exposed bedrock and glacial gravel outcrops. Shell material produced by organisms living on or near rocks is common both in the rocky zones and in abutting environments. The outer basin begins at a depth of about 60 m and extends beyond the 100 m isobath. This area is occasionally bordered on its landward side by the late Quaternary lowstand shoreline. Below this shoreline thicker deposits of sediment exist, while all environments landward were reworked by a regression and transgression of the sea.

Gulf of Maine↗

USGS1975

Location of the non-tidal current null zone in northern San Francisco Bay

Variations in Sacramento-San Joaquin River discharge into northern San Francisco Bay causes shifts in location of the bottom density current null zone. At a river flow of 2000 m 3 /s this null zone is approximately 20 km from the seaward end of the estuary, whereas at a river flow of 100 m 3 /s it is 80 km from the seaward end; the corresponding distances of salinity penetration are approximately 40 and 90 km from the seaward end. Seaward of the null zone, during low (summer) river discharge conditions, the inward-flowing bottom density current appears typically strong (5–15 cm/s) relative to the outward-flowing river current (river discharge per unit cross-channel area) of <2 cm/s. Landward from this null zone the average river current increases with decreasing cross-channel area. This circulation implies that during the summer water within the null zone has the longest average advective replacement time relative to water seaward or landward of the null zone.

California↗

USGS1978

Numerical simulation of dissolved silica in the San Fancisco Bay

A two-dimensional (vertical) steady-state numerical model that simulates water circulation and dissolved-silica distributions is applied to northern San Francisco Bay. The model (1) describes the strong influence of river inflow on estuarine circulation and, in turn, on the biologically modulated silica concentration, and (2) shows how rates of silica uptake relate to silica supply and mixing rates in modifying a conservative behavior. Longitudinal silica distributions influenced by biological uptake (assuming both vertically uniform and vertically decreasing uptake situations) show that uptake rates of 1 to 10 μg-at. l −1 day −1 are sufficient to depress silica concentrations at river inflows of 100–400 m 3 s −1 , respectively, and that the higher rates appear ineffective at inflows above 400 m 3 s −1 . The simulations further indicate that higher silica utilization in the null zone is not essential to depress silica concentrations strongly there. Advective water-replacement times at river inflows of 400, 200 and 100 m 3 s −1 are computed to be less than 25, 45 and 75 days, respectively, for a 120-km estuary-river system.

California↗

USGS1983

Distribution of submersed aquatic macrophytes in the tidal Potomac River

Results of a 3-year survey (1978?1980) and review of historic trends have shown a major decline in the number of species and the distribution of submersed aquatic macrophytes in the tidal Potomac River since the early 1900's. The freshwater tidal river is essentially devoid of plants and only very sparse populations remain in the mesohaline section of the estuary. Present plant populations are largely confined to the transition-zone region where salinity instability at the fresh-to-brackish water interface is believed to reduce biotic stress on submersed vegetation. Many factors may be implicated in the loss of vegetation over major regions of the tidal Potomac River; however, long-term conditions of excessive nutrients appear to be primarily responsible for the present distribution.

Aquatic Botany↗

USGS1985

The effects of grazers and light penetration on the survival of transplants of Vallisneria americana Michs in the tidal Potomac River, Maryland

Poor light penetration and grazing are among the factors potentially responsible for the lack of submersed aquatic macrophytes in the tidal Potomac River. Between 1980 and 1983, plugs, springs and tubers of Vallisneria americana Michx were transplanted from the oligohaline Potomac Estuary to six sites in the freshwater tidal Potomac River. Transplants made in 1980 and 1981 were generally successful only when protected by full exclosures which prevented grazing. Grazing resulted in the removal of whole plants or clipping off of plant leaves in unprotected plots. Plants protected in the first year were permanently established, despite the occurrence of grazing in subsequent years, at Elodea Cove and Rosier Bluff, where light penetration was high (average 1% light level was 1.6–1.7 m). Plants were not permanent;y established at Goose Island, where light penetration was lower (average 1% light level was 1.4 m) and grazing occurred, or Neabsco Bay where light penetration was very low (average 1% light level was 1.0 m) and grazing may not have occurred. In 1983, Secchi depth transparencies in the upper tidal river were improved significantly compared to 1978–1981. Both protected and unprotected transplants thrived in 1983.

Maryland↗

USGS1982

Mechanisms for trace metal enrichment at the surface microlayer in an estuarine salt marsh

The relative contributions of adsorption to particulate surfaces, complexation with surface-active organic ligands and uptake by micro-organisms were evaluated with respect to their importance in the surface microlayer enrichment (‘partitioning’) of Cd, Pb and Cu. The contributions of each process were inferred from field data in which partitioning of the dissolved and particulate forms of Cd, Pb and Cu, total and dissolved organic carbon, particles and total bacteria were observed. In the South San Francisco Bay estuary, particle enrichment appears to control trace metal partitioning. Trace metal association with the particulate phase and the levels of partitioning observed were in the order Pb > Cu > Cd and reflect the calculated equilibrium chemical speciation of these metals in computer-simulated seawater matrices.

Marine Chemistry↗

USGS1977

Suspended particle transport and circulation in San Francisco Bay - an overview

Differences in the relative magnitude and timing of wind stress and river inflow in the northern and southern reaches of San Francisco Bay create different sedimentary conditions. The northern reach is a partially to well mixed estuary receiving most of the total annual fresh-water input (840 m 3 sec −1 ) and suspended sediment input (4 × 10 6 metric tons) into the bay; more than 80% of the sediment is received during winter. Density-driven nontidal estuarine circulation (~5 cm sec −1 ) maintains a turbidity maximum which changes seasonally in particle concentration (40 to 80 mg litre −1 ). Strong tidal currents (≤225 cm sec −1 ) and wind-generated waves resuspend sediment from the shallow bay floor: some of the riverborne sediment deposited during winter is resuspended during summer and transported landward to the turbidity maximum. Long-term sediment data (extrapolated from bathymetrie charts) indicate that the northern reach is an effective sediment trap. In contrast, long-term sediment data suggest that the southern reach is experiencing net erosion. The southern reach receives little river inflow or riverborne suspended sediment, and the average nontidal circulation is weak (≤2 cm sec −1 ). The principal source of suspended sediment (25 mg litre −1 ) in the southern reach is the shallow bay floor (average depth 6 m).

Book chapter↗

USGS2015

Measuring storm tide and high-water marks caused by Hurricane Sandy in New York: Chapter 2

In response to Hurricane Sandy, personnel from the U.S. Geological Survey (USGS) deployed a temporary network of storm-tide sensors from Virginia to Maine. During the storm, real-time water levels were available from tide gages and rapid-deployment gages (RDGs). After the storm, USGS scientists retrieved the storm-tide sensors and RDGs and surveyed high-water marks. These data demonstrate that the timing of peak storm surge relative to astronomical tide was extremely important in southeastern New York. For example, along the south shores of New York City and western Suffolk County, the peak storm surge of 6–9 ft generally coincided with the astronomical high tide, which resulted in substantial coastal flooding. In the Peconic Estuary and northern Nassau County, however, the peak storm surge of 9 ft and nearly 12 ft, respectively, nearly coincided with normal low tide, which helped spare these communities from more severe coastal flooding.

New York↗

USGS2025

Predictive regressive models of recent marsh sediment thickness improve the quantification of coastal marsh sediment budgets

Coastal marsh wetlands experience variations in vertical gains and losses through time, which have allowed them to infill relict topography and record variations in drivers. The stratigraphic unit associated with the development of the marsh also reflects the long-term importance of key ecosystem services supplied by the marsh environment, including carbon storage and storm mitigation. Mapping these coastal wetland sediments and the marsh unit thickness is challenging as traditional coastal geophysical tools are not easily deployable (acoustic methods) or are unreliable in saline-soil environments (e.g., ground-penetrating radar), leaving core-based methods the most viable mapping method. In the present study, we utilized prior information on the geologic architecture of the region to select spatial and physical metrics that likely persisted throughout evolution of the marsh during the late Holocene. We then assessed the individual and collective power of these metrics to predict marsh thickness observed from cores. Employing regressive predictive models powered by these data, we improve the quantification of marsh thickness for a coastal fringing marsh within the Grand Bay estuary in Mississippi and Alabama (USA). The information gained from this approach yields improved estimates of the carbon stocks in this environment. Additionally, the stored sediment masses reflect the past, and potential future, persistence of the Grand Bay marsh under historical and present marsh-estuarine sediment exchange fluxes. Such improvements to both the sediment budget of recent marsh stratigraphic units and the spatial extent provide new resources for comparison with large-scale landscape models, the latter of which may be used, when validated, to predict future change and ecosystem transformations.

Alabama. Mississippi↗

USGS2015

Component-specific dynamics of riverine mangrove CO 2 efflux in the Florida coastal Everglades

Carbon cycling in mangrove forests represents a significant portion of the coastal wetland carbon (C) budget across the latitudes of the tropics and subtropics. Previous research suggests fluctuations in tidal inundation, temperature and salinity can influence forest metabolism and C cycling. Carbon dioxide (CO2) from respiration that occurs from below the canopy is contributed from different components. In this study, we investigated variation in CO2 flux among different below-canopy components (soil, leaf litter, course woody debris, soil including pneumatophores, prop roots, and surface water) in a riverine mangrove forest of Shark River Slough estuary, Everglades National Park (Florida, USA). The range in CO2 flux from different components exceeded that measured among sites along the oligohaline-saline gradient. Black mangrove (Avicennia germinans) pneumatophores contributed the largest average CO2 flux. Over a narrow range of estuarine salinity (25–35 practical salinity units (PSU)), increased salinity resulted in lower CO2 flux to the atmosphere. Tidal inundation reduced soil CO2 flux overall but increased the partial pressure of CO2 (pCO2) observed in the overlying surface water upon flooding. Higher pCO2 in surface water is then subject to tidally driven export, largely as HCO3. Integration and scaling of CO2 flux rates to forest scale allowed for improved understanding of the relative contribution of different below-canopy components to mangrove forest ecosystem respiration (ER). Summing component CO2fluxes suggests a more significant contribution of below-canopy respiration to ER than previously considered. An understanding of below-canopy CO2 component fluxes and their contributions to ER can help to elucidate how C cycling will change with discrete disturbance events (e.g., hurricanes) and long-term change, including sea-level rise, and potential impact mangrove forests. As such, key controls on below-canopy ER must be taken into consideration when developing and modeling mangrove forest C budgets.

Florida↗

USGS2024

Rates of osmoconformation in triploid eastern oysters, and comparison to their diploid half-siblings

Triploid eastern oysters ( Crassostrea virginica ) suffer greater mortalities than diploids in the U.S. Gulf of Mexico estuaries when extreme low salinities (< 5) and elevated temperatures (≥ 28 °C) coincide. To investigate potential causes, changes in plasma osmolality, hemolymph pH, valve opening and mortality in diploid and triploid oyster half-siblings were compared during a step-down gradual acclimation from a salinity of 5 to 1 (5, 2.5, 2.0, 1.5, 1.0) at 23 °C (expt 1) and at 28 °C (expt 2). To further explore differences in diploid and triploid oyster responses to changing salinity, we compared their plasma osmolality after abrupt decreases in salinity from 20 to 10 and 5, followed by increases in salinity from 5 and 10 to 20 once oysters had osmoconformed to the lowered salinities (expt 3). Lastly, changes in wet weights of mantle tissue explants were compared between diploid and triploid oysters every 10 min for 40 min after being transferred from a salinity of 20 to 10 (expt 4). Oysters of both ploidies were able to osmoconform to water at salinities between 5 and 1.5. After a decrease in salinity, triploid oysters were slower to open their valves and osmoconform, were less efficient in maintaining acid-base status enduring longer periods of acidic hemolymph pH, and were less efficient in regulating tissue water content compared to half-sibling diploid oysters. At a salinity of 1.0, plasma of both diploid and triploid oysters remained hyperosmotic, their hemolymph acidic and their valves closed. Oysters osmoconformed faster at 28 °C than at 23 °C, but the combination of low salinity (≤ 1.5) and higher temperature caused rapid mortalities regardless of ploidies. Triploid oysters, however, started dying earlier and at greater percentages when salinity of 1.5 and temperature of 28 °C were combined. Triploids have been embraced as a means to support higher production, but results indicate superimposed stressors, such as low salinity and high temperature, may be more lethal to triploid than diploid oysters.

Aquaculture↗

USGS2008

Calculating wave-generated bottom orbital velocities from surface-wave parameters

Near-bed wave orbital velocities and shear stresses are important parameters in many sediment-transport and hydrodynamic models of the coastal ocean, estuaries, and lakes. Simple methods for estimating bottom orbital velocities from surface-wave statistics such as significant wave height and peak period often are inaccurate except in very shallow water. This paper briefly reviews approaches for estimating wave-generated bottom orbital velocities from near-bed velocity data, surface-wave spectra, and surface-wave parameters; MATLAB code for each approach is provided. Aspects of this problem have been discussed elsewhere. We add to this work by providing a method for using a general form of the parametric surface-wave spectrum to estimate bottom orbital velocity from significant wave height and peak period, investigating effects of spectral shape on bottom orbital velocity, comparing methods for calculating bottom orbital velocity against values determined from near-bed velocity measurements at two sites on the US east and west coasts, and considering the optimal representation of bottom orbital velocity for calculations of near-bed processes. Bottom orbital velocities calculated using near-bed velocity data, measured wave spectra, and parametric spectra for a site on the northern California shelf and one in the mid-Atlantic Bight compare quite well and are relatively insensitive to spectral shape except when bimodal waves are present with maximum energy at the higher-frequency peak. These conditions, which are most likely to occur at times when bottom orbital velocities are small, can be identified with our method as cases where the measured wave statistics are inconsistent with Donelan's modified form of the Joint North Sea Wave Project (JONSWAP) spectrum. We define the 'effective' forcing for wave-driven, near-bed processes as the product of the magnitude of forcing times its probability of occurrence, and conclude that different bottom orbital velocity statistics may be appropriate for different problems. ?? 2008 Elsevier Ltd.

Computers & Geosciences↗

USGS2021

Retrospective analysis of estrogenic endocrine disruption and land-use influences in the Chesapeake Bay watershed

The Chesapeake Bay is the largest estuary in the United States and its watershed includes river drainages in six states and the District of Columbia. Sportfishing is of major economic interest, however, the rivers within the watershed provide numerous other ecological, recreational, cultural and economic benefits, as well as serving as a drinking water source for millions of people. Consequently, major fish kills and the subsequent finding of estrogenic endocrine disruption (intersex or testicular oocytes and plasma vitellogenin in male fishes) raised public and management concerns. Studies have occurred at various sites within the Bay watershed to document the extent and severity of endocrine disruption, identify risk factors and document temporal and spatial variability. Data from these focal studies, which began in 2004, were used in CART (classification and regression trees) analyses to better identify land use associations and potential management practices that influence estrogenic endocrine disruption. These analyses emphasized the importance of scale (immediate versus upstream catchment) and the complex mixtures of stressors which can contribute to surface water estrogenicity and the associated adverse effects of exposure. Both agricultural (percent cultivated, pesticide application, phytoestrogen cover crops) and developed (population density, road density, impervious surface) land cover showed positive relationships to estrogenic indicators, while percent forest and shrubs generally had a negative association. The findings can serve as a baseline for assessing ongoing restoration and management practices.

Chesapeake Bay river watersheds↗