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At least 1,279 records · Page 71Linked to original sources
USGS2019

San Francisco Bay triennial bird egg monitoring program for contaminants, California—2018

The Regional Monitoring Program for Water Quality in San Francisco Bay (RMP), administered by the San Francisco Estuary Institute, is a large-scale effort to monitor contaminant trends in water, sediment, fish, and birds throughout San Francisco Bay (San Francisco Estuary Institute, 2016). As part of the RMP and the U.S. Geological Survey (USGS) long-term Wildlife Contaminants Program, the USGS samples doublecrested cormorant ( Phalacrocorax auritus ) and Forster’s tern ( Sterna forsteri ) eggs throughout the San Francisco Bay approximately every 3 years to assess temporal trends in contaminant concentrations. This sampling has previously been carried out by USGS in 2009, 2012, and 2016. This document summarizes egg collections for 2018, as well as mercury concentrations in Forster’s tern eggs on an individual egg basis. These data are available in a USGS data release (Ackerman and others, 2019).

California↗
USGS2005

South San Francisco Bay tidal marsh vegetation and elevation surveys-Corkscrew Marsh, Bird Island, and Palo Alto Baylands, California, 1983

Changes in the topography and ecology of the San Francisco Bay Estuary ('Estuary') during the past 200 years have resulted in the loss of nearly 80 percent of the historical salt marsh in the region. Currently, numerous projects are being undertaken by federal, state, and local governments in an attempt to restore wetland habitat and ecosystem function at a number of locations within the Estuary. Much information is needed concerning the historical topographic and ecologic characteristics of the Estuary to facilitate these restoration efforts. This report presents previously unpublished vegetation and elevation data collected in 1983 by the California State Lands Commission at Corkscrew marsh, Bird Island, and Palo Alto Baylands, all located in South San Francisco Bay. These precise and detailed elevation and plant surveys represent a snapshot of South Bay flora before invasion by the Atlantic smooth cordgrass, Spartina alterniflora. Such precise elevation data are rare for relatively undisturbed marshes in the San Francisco Bay; publication of these historical data may facilitate wetland restoration efforts. Marsh-surface and tidal-channel elevations were determined at a total of 962 stations by differential leveling to established tidal benchmark stations at each site and referenced to Mean Lower Low Water (MLLW) relative to the National Tidal Datum Epoch (1960-78). In addition, presence or absence of nine salt marsh species, percentage plant cover, and percentage bare soil were recorded for 1-square meter quadrats at 648 stations where elevations were determined. Collectively, over the three sites, salt marsh vegetation ranged in elevation from 0.98 to 2.94 m above MLLW. S. foliosa and Salicornia virginica were the most frequently observed plant species. Atriplex patula, Deschampsia cespitosa, and Limonium californicum were each recorded at only one of the three sites.

Data Series↗
USGS2003

Response of birds to thinning young Douglas-fir forests

As a result of recent fire history and decades of even-aged forest management, many coniferous forests in western Oregon are composed of young (20-50 yrs), densely stocked Douglas-fir stands. Often these stands are structurally simple - a single canopy layer with one or two overstory tree species - and have a relatively sparse understory. The lack of structural complexity in these stands may limit the availability of key habitat components for several species of vertebrates, including birds. Thinning may increase structural diversity by reducing competition among overstory trees and increasing the amount of sunlight reaching the forest floor, thereby increasing development of understory vegetation. Existing old-growth forests may have developed under lower densities than is typical of contemporary plantations. Thus, thinning also may be a tool for accelerating the development of late-successional forest conditions in some circumstances. In addition to the potential increases in structural and biological diversity, thinning frequently is used to optimize wood fiber production and to generate timber revenue.

Fact Sheet↗
USGS2006

Feral Pigs, Introduced Mosquitoes, and the Decline of Hawai'i's Native Birds

The introduction of mosquitoes, avian pox, and avian malaria to the Hawaiian Islands has had a profound effect on the geographical distribution and population number of highly susceptible Hawaiian honeycreepers, and likely contributed to the extinction of several species. While the mosquito vector (disease-carrier) is most closely associated with human activity, in remote Hawaiian rain forests, feral pigs may be pivotally important to the disease system. Since 1991, USGS scientists have taken a leadership position in identifying the role these diseases continue to play in the decline and extinction of native Hawaiian forest birds and in finding ways to mitigate their impacts.

Hawai'i↗
USGS2008

Management and research applications of long-range surveillance radar data for birds, bats, and flying insects

There is renewed interest in using long-range surveillance radar as a biological research tool due to substantial improvements in the network of radars within the United States. Technical improvements, the digital nature of the radar data, and the availability of computing power and geographic information systems, enable a broad range of biological applications. This publication provides a summary of long-range surveillance radar technology and applications of these data to questions about movement patterns of birds and other flying wildlife. The intended audience is potential radar-data end users, including natural-resource management and regulatory agencies, conservation organizations, and industry. This summary includes a definition of long-range surveillance radar, descriptions of its strengths and weaknesses, information on applications of the data, cost, methods of calibration, and what end users need to do, and some key references and resources.

Texas↗
USGS2014

Birds of a feather

Greater sage-grouse ( Centrocercus urophasiunus , hereafter sage-grouse) are broadly distributed, occupy a diversity of sagebrush habitats, and face multiple threats. As a result of these threats, sage-grouse populations are declining and are now absent from almost one-half of their estimated range prior to Euro-American settlement. The risks to sage-grouse are significant enough to merit candidate status for this species for listing under the U.S. Endangered Species Act (Federal Register Notice, March 5, 2010). According to this decision by the U.S. Fish and Wildlife Service in 2010, population and habitat fragmentation coupled with lack of regulatory mechanisms warranted listing, although implementation of actions has been precluded by other priorities. Candidate status for listing under the Endangered Species Act and possible regulatory action in the near future provide strong motivation to better understand the dynamics of sage-grouse populations and their habitat requirements. The general approach currently taken by managers focuses on maintaining or enhancing sage-grouse populations across their distribution in regions containing the highest densities of breeding birds and their important seasonal habitats, also known as priority areas for conservation (PACs). The rationale behind this approach is that it permits limited resources to be applied in regions that have the greatest potential to benefit the largest proportion of sage-grouse. Development and other forms of land use can then proceed under standard regulations in areas outside PACs. Implementation of this approach requires detailed information about habitat, connections among sage-grouse populations, and approaches to restore and maintain sagebrush. These are important topics of study by the U.S. Geological Survey (USGS) and its research partners.

California;Idaho;Nevada;Oregon;Utah;Washington↗
USGS2014

Mercury in birds of San Francisco Bay-Delta, California: trophic pathways, bioaccumulation, and ecotoxicological risk to avian reproduction

San Francisco Bay Estuary in northern California has a legacy of mercury contamination, which could reduce the health and reproductive success of waterbirds in the estuary. The goal of this study was to use an integrated field and laboratory approach to evaluate the risks of mercury exposure to birds in the estuary. We examined mercury bioaccumulation, and other contaminants of concern, in five waterbird species that depend heavily on San Francisco Bay Estuary for foraging and breeding habitat: American avocets ( Recurvirostra americana ), black-necked stilts ( Himantopus mexicanus ), Forster’s terns ( Sterna forsteri ), Caspian terns ( Hydroprogne caspia ), and surf scoters ( Melanitta perspicillata ). These species have different foraging habitats and diets that represent three distinct foraging guilds within the estuary’s food web. In this report, we provide an integrated synthesis of the primary findings from this study and results are synthesized from 54 peer-reviewed publications generated to date with other unpublished results.

California↗
USGS2018

Laboratory evaluation of the Sea-Bird Scientific HydroCycle-PO4 phosphate sensor

Sea-Bird Scientific’s HydroCycle-PO 4 phosphate sensor is a single-analyte wet-chemistry sensor designed for in situ environmental monitoring. The unit was evaluated at the U.S. Geological Survey Hydrologic Instrumentation Facility to assess the accuracy of the sensor in solutions with known phosphorous concentration and to test the effects of chromophoric (colored) dissolved organic matter (CDOM) and natural water matrixes on sensor accuracy. Accuracy was tested with three standards: 0.110, 0.174, and 0.260 milligram per liter, as phosphorous (mg/L as P). The 0.110- and 0.260-mg/L standards were made from a dilution of a National Institute of Standards and Technology-traceable phosphate-phosphorous standard with Type I deionized water (DIW). Average measured phosphate concentrations of the tested standards (0.110, 0.174, and 0.260 mg/L as P) in DIW were 0.132, 0.181, and 0.310 mg/L as P, for differences of 20, 4, and 19 percent, respectively. Measured phosphate concentration of a tested standard was biased by the addition of tea water filtered through a 0.45-micrometer pore size filter (filtered tea water [FTW]) simulating the effect of CDOM. An aliquot of the filtered tea solution was sent to a certified environmental laboratory, which reported a less than reporting level (<0.004 mg/L as P) phosphate concentration. True color of the FTW was measured at 380 platinum-cobalt units by using Standard Methods 8025. For this FTW test, the measured phosphate concentration for the clear 0.260 mg/L as P standard averaged 0.366 mg/L as P. This concentration increased to an average of 0.653 mg/L as P with the addition of 10 percent FTW, and to an average of 0.859 mg/L as P with the addition of 20 percent FTW. These test results indicate a positive bias of up to 40 percent of the concentrations of the measured phosphate concentrations when CDOM is present and indicate a proportional increase in an apparent concentration of phosphorus instrument response as CDOM concentration increases.

Open-File Report↗
USGS2019

Trends in mammalian predator control trapping events intended to protect ground-nesting, endangered birds at Haleakalā National Park, Hawaiʻi: 2000–14

Predation and habitat degradation by non-native species are principal terrestrial threats to the federally endangered Hawaiian Petrel (ʻuaʻu, Pterodroma sandwichensis ) and Hawaiian Goose (nēnē, Branta sandvicensis ) within Haleakalā National Park (HALE), Maui, Hawaiʻi. Since 1981, HALE has maintained a network of live traps to control invasive mammalian predators and protect these endangered birds. To evaluate trapping efficiency in HALE, we evaluated four types of trap outcomes for the years 2000–14: Bait Lost (62 percent), No Event (23 percent), Trap Triggered (10 percent), and Predator Event (Rat Caught, Cat Caught, or Mongoose Caught; 4 percent). We used a multinomial logistic regression model to explore trends in the probabilities of broad outcomes (No Event, Other Event [Bait Lost or Trap Triggered], or Predator Event [Rat Caught, Cat Caught, or Mongoose Caught]). Temporal variations in the probabilities of No Event, Other Event, or Predator Event were best explained by ʻuaʻu season (off-season, pre-laying, incubation, or nestling), month, year, and seasonal rainfall with greater probabilities of Predator Event during the ʻuaʻu nestling period (July–October). The probability of Predator Event or Other Event decreased with increased rainfall. Spatial analysis showed that percent vegetative cover and vegetation type best explained variations in the probabilities of trapping outcomes with the probability of Predator Event being greatest in developed and tree covered areas. The proportion of trapping events that resulted in Rat Caught was at least 20 times greater than the proportions of events resulting in Cat or Mongoose Caught throughout the 15-year management period. Temporal analysis showed that season, year, and maximum temperature best explained variations in probabilities of Predator Event; the probability of Rat Caught was greatest during the ʻuaʻu pre-laying and incubation periods (February–June), was greater during periods of warmer maximum temperatures, and overall, increased over the 15-year management period. The probability of Mongoose Caught was greatest during the ʻuaʻu offseason (November–January), decreased through time (2000–14), and decreased with increasing weekly maximum temperatures. Trends in Cat Caught were hard to detect because of small sample sizes, though slight trends indicated cat captures were most frequent during the ʻuaʻu off season and less frequent through time (2000–14). The probability of a Cat Caught event was also negatively correlated with weekly temperatures. Spatial analysis showed elevation best explained variations in probabilities of capture for rats, cats, and mongoose. Overall, predator catches were fewer at higher elevations, and of predators caught at higher elevations, the clear majority were rats. Our results are being used by HALE Endangered Wildlife Management staff to evaluate existing methods for predator control and efficacy of existing trap-based control strategies intended to protect ʻuaʻu and nēnē.

Hawaii↗
USGS2019

The effects of management practices on grassland birds—Greater Sage-Grouse ( Centrocercus urophasianus )

Keys to Greater Sage-Grouse ( Centrocercus urophasianus ) management are maintenance of expansive stands of sagebrush ( Artemisia species [spp.]), especially varieties of big sagebrush ( Artemisia tridentata ) with abundant forbs in the understory, particularly during spring; undisturbed and somewhat open sites for leks; and healthy perennial grass and forb stands intermixed with sagebrush for brood rearing. Within suitable habitats, areas should have 15–25 percent canopy cover of sagebrush 30–80 centimeters (cm) tall for nesting and 10–25 percent canopy cover 40–80 cm tall for brood rearing. In winter habitats, shrubs should be exposed 25–35 cm above snow and have 10–30 percent canopy cover exposed above snow. In nesting and brood-rearing habitats, the understory should have at least 15 percent cover of grasses and at least 10 percent cover of forbs greater than or equal to 18 cm tall. Greater Sage-Grouse have been reported to use habitats with 5–110 cm average vegetation height, 5–160 cm visual obstruction reading, 3–51 percent grass cover, 3–20 percent forb cover, 3–69 percent shrub cover, 7–63 percent sagebrush cover, 14–51 percent bare ground, and 0–18 percent litter cover. Unless otherwise noted, this account refers to habitat requirements and environmental factors affecting Greater Sage-Grouse but not Gunnison Sage-Grouse ( Centrocercus minimus ). Habitats used by Gunnison Sage-Grouse are generally similar to habitats used by Greater Sage-Grouse, but some differences have been reported. The Greater Sage-Grouse is a game bird and is hunted throughout most of its current range. This account does not address harvest or its effects on populations; rather, this account focuses on the effects of habitat management.

Professional Paper↗
USGS2020

The effects of management practices on grassland birds—Merlin ( Falco columbarius )

The key to Merlin ( Falco columbarius ) management is maintaining an interspersion of groves of deciduous or coniferous trees for nesting and open grasslands for hunting. Merlins do not build their own nests but rather use former nests of other bird species, including those of corvids (crows, ravens, and magpies) and accipitrids (hawks). In recent decades, Merlins have established breeding populations in urban and residential areas in the northern Great Plains.

Professional Paper↗
USGS2020

The effects of management practices on grassland birds—Prairie Falcon ( Falco mexicanus )

Keys to Prairie Falcon ( Falco mexicanus ) management include maintaining cliffs with suitable recesses for use as nest sites (that is, the substrate that supports the nest or the specific location of the nest on the landscape), protecting nest sites from human disturbance by designating buffer zones, and maintaining open landscapes and habitats that support populations of ground squirrels ( Urocitellus species) and small birds.

Professional Paper↗
USGS2024

Accounting for the fraction of carcasses outside the searched area in the estimation of bird and bat fatalities at wind energy facilities

Accurate estimation of bird and bat mortality at wind energy facilities requires accounting for carcasses that lie outside the search plots because they lie beyond the search radius or in areas within the search radius that remain unsearched due to sub-optimal search conditions such as thick vegetation, rough or dangerous ground, water, or restricted access to the land. However, carcass density is not constant around a turbine and the fraction of carcasses within the unsearched area can vary greatly depending on where the area lies relative to the turbine. The density-weighted proportion approach takes into account the changing density of carcasses around turbines to estimate the fraction of carcasses lying in unsearched areas (dwp). It involves tallying the carcasses found in concentric rings centered at the turbine, fitting a curve to the carcass densities in the rings, and dividing the integral of the curve over the area searched by the integral over the total area. Accounting for unsearched area presents special difficulties such as extrapolation beyond the search radius, spatial prediction, and model selection, which are frequently ignored or under-appreciated, potentially resulting in substantial estimation errors. A powerful new R software package (dwp) is available to perform the calculations, given the distances at which carcasses were found from turbines and a map of the searched area used to discern the fraction of the ground searched at each distance. If all ground within a given search radius has been searched, the map is simply the search radius. For more complicated search plots, other kinds of maps may be used: R polygons for plots that can be readily delineated into searched and not-searched areas (for example, searches restricted to access roads and turbine pads), GIS shape files for complicated search patterns (for example, non-uniform vegetation or ground texture resulting in spatially varying search conditions), or raster files for complicated search patterns coupled with carcass spatial distribution that depends on both distance and direction from turbines. This study discusses estimation and interpretation of dwp in the context of several realistic examples; provides guidance for use of the dwp software for doing the analyses; and addresses questions of extrapolation, spatial prediction, and model selection.

Techniques and Methods↗
USGS2013

Mapping risk of avian influenza transmission at the interface of domestic poultry and wild birds

Emergence of avian influenza viruses with high lethality to humans, such as the currently circulating highly pathogenic A(H5N1) (emerged in 1996) and A(H7N9) cause serious concern for the global economic and public health sectors. Understanding the spatial and temporal interface between wild and domestic populations, from which these viruses emerge, is fundamental to taking action. This information, however, is rarely considered in influenza risk models, partly due to a lack of data. We aim to identify areas of high transmission risk between domestic poultry and wild waterfowl in China, the epicenter of both viruses. Two levels of models were developed: one that predicts hotspots of novel virus emergence between domestic and wild birds, and one that incorporates H5N1 risk factors, for which input data exists. Models were produced at 1 and 30 km spatial resolution, and two temporal seasons. Patterns of risk varied between seasons with higher risk in the northeast, central-east, and western regions of China during spring and summer, and in the central and southeastern regions during winter. Monte-Carlo uncertainty analyses indicated varying levels of model confidence, with lowest errors in the densely populated regions of eastern and southern China. Applications and limitations of the models are discussed within.

Frontiers in Public Health↗
USGS2019

A phylogenomic supertree of birds

It has long been appreciated that analyses of genomic data (e.g., whole genome sequencing or sequence capture) have the potential to reveal the tree of life, but it remains challenging to move from sequence data to a clear understanding of evolutionary history, in part due to the computational challenges of phylogenetic estimation using genome-scale data. Supertree methods solve that challenge because they facilitate a divide-and-conquer approach for large-scale phylogeny inference by integrating smaller subtrees in a computationally-efficient manner. Here, we combined information from sequence capture and whole-genome phylogenies using supertree methods. However, available phylogenomic trees had limited overlap so we used taxon-rich (but not phylogenomic) megaphylogenies to weave them together. This allowed us to construct a phylogenomic supertree, with support values, that included 707 bird species (~7% of avian species diversity). We estimated branch lengths using mitochondrial sequence data and we used this to estimate divergence times. Our time-calibrated supertree supports radiation of all three major avian clades (Palaeognathae, Galloanseres, and Neoaves) near the Cretaceous-Paleogene (K-Pg) boundary. The approach we used will permit the continued addition of taxa to this supertree as new phylogenomic data are published, and it could be applied to other taxa as well.

Diversity↗
USGS2024

Infectivity of wild-bird origin Influenza A viruses in Minnesota wetlands across seasons

The environmental tenacity of influenza A viruses (IAVs) in the environment likely plays a role in their transmission; IAVs are able to remain infectious in aquatic habitats and may have the capacity to seed outbreaks when susceptible wild bird hosts utilize these same environments months or even seasons later. Here, we aimed to assess the persistence of low-pathogenicity IAVs from naturally infected ducks in Northwestern Minnesota through a field experiment. Viral infectivity was measured using replicate samples maintained in distilled water in a laboratory setting as well as in filtered water from four natural water bodies maintained in steel perforated drums (hereafter, mesocosms) within the field from autumn 2020 to spring 2021. There was limited evidence for the extended persistence of IAVs held in mesocosms; from 65 initial IAV-positive samples, only six IAVs persisted to at least 202 days in the mesocosms compared to 17 viruses persisting at least this long when held under temperature-controlled laboratory settings in distilled water. When accounting for the initial titer of samples, viruses detected at a higher concentration at the initiation of the experiment persisted longer than those with a lower starting titer. A parallel experimental laboratory model was used to further explore the effects of water type on viral persistence, and the results supported the finding of reduced tenacity of IAVs held in mesocosms compared to distilled water. The results of this investigation provide evidence that many factors, including temperature and physicochemical properties, impact the duration of viral infectivity in natural settings, further extending our understanding of the potential and limitations of environmental-based methodologies to recover infectious IAVs.

Minnesota↗
USGS2013

Effect of salt on the response of birds to sucrose

The preference of male red-winged blackbirds for solutions of sucrose and sucrose with 0.03 M sodium chloride was tested, using a two-bottle choice test. Preliminary experiments demonstrated that the birds were indifferent to 0.03 M NaCl in water. Both control and experimental animals exhibited indifference to the solutions at the lowest concentration and aversion at the highest. The data suggest that the added sodium chloride makes the sucrose stimulus more discriminable.

Physiological Psychology↗
USGS2008

Biological and societal dimensions of lead poisoning in birds in the USA

The ingestion of spent lead shot was known to cause mortality in wild waterfowl in the US a century before the implementation of nontoxic shot regulations began in 1972. The biological foundation for this transition was strongly supported by both field observations and structured scientific investigations. Despite the overwhelming evidence, various societal factors forestalled the full transition to nontoxic shot for waterfowl hunting until 1991. Now, nearly 20 years later, these same factors weigh heavily in current debates about nontoxic shot requirements for hunting other game birds, requiring nontoxic bullets for big game hunting in California Condor range and for restricting the use of small lead sinkers and jig heads for sport-fishing. As with waterfowl, a strong science-based foundation is requisite for further transitions to nontoxic ammunition and fishing weights. Our experiences have taught us that the societal aspects of this transition are as important as the biological components and must be adequately addressed before alternatives to toxic lead ammunition, fishing weights, and other materials will be accepted as an investment in wildlife conservation.

Book chapter↗