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At least 1,261 records · Page 70Linked to original sources
USGS2019

Functional and geographic components of risk for climate sensitive vertebrates in the Pacific Northwest, USA

Rarity and life history traits inform multiple dimensions of intrinsic risk to climate and environmental change and can help systematically identify at-risk species. We quantified relative geographic rarity (area of occupancy), climate niche breadth, and life history traits for 114 freshwater fishes, amphibians, and reptiles in the U.S. Pacific Northwest. Our approach leveraged presence-only, publicly available data and traits-based inference to evaluate area of occupancy, climate sensitivity (i.e., climate niche breadth), and a Rarity and Climate Sensitivity (RCS) index of all species across multiple geographic extents, grain sizes, and data types. The RCS index was relatively stable across extents, grains, and data types, with climate sensitivity differentiating species with otherwise similar areas of occupancy. We also found that species with sensitivity-associated traits (e.g., long generation time, low fecundity) were not necessarily the same species identified as at-risk with geographical approaches (small range size, small climate niche breadth). Many multispecies assessments using coarse-scale data (e.g., entire range maps or convex-hull approaches) often focus on a single dimension of intrinsic risk; others rely on data-intensive models only applicable to a few well-studied species. What remains is a need for an approach that enables multispecies, multidimensional assessment efforts. This is particularly true at regional scales, where management needs require assessments that are intermediate to coarse- and fine-scale approaches. We demonstrate that by considering multiple dimensions of intrinsic risk to climate change (range size, climate sensitivity, and traits), site-specific locality data may offer a pathway for ensuring vulnerable, understudied species do not go overlooked in conservation.

Pacific Northwest↗
USGS2018

A multi-species synthesis of satellite telemetry data in the Pacific Arctic (1987–2015): Overlap of marine mammal distributions and core use areas

We collated available satellite telemetry data for six species of ice-associated marine mammals in the Pacific Arctic: ringed seals ( Pusa hispida ; n = 118), bearded seals( Erignathus barbatus, n = 51), spotted seals ( Phoca largha , n = 72), Pacific walruses ( Odobenus rosmarus divergens, n = 389); bowhead whales ( Balaena mysticetus , n = 46), and five Arctic and sub-arctic stocks of beluga whales ( Delphinapterus leucas , n = 103). We also included one seasonal resident, eastern North Pacific gray whales ( Eschrichtius robustus , n = 12). This review summarized the distribution of daily locations from satellite-linked transmitters during two analysis periods, summer (May–November) and winter (December–April), and then examined the overlap among species. Six multi-species core use areas were identified during the summer period: 1) Chukotka/Bering Strait; 2) Norton Sound; 3) Kotzebue Sound; 4) the northeastern Chukchi Sea; 5) Mackenzie River Delta/Amundsen Gulf; and 6) Viscount Melville Sound. During the winter period, we identified four multi-species core use areas: 1) Anadyr Gulf/Strait; 2) central Bering Sea; 3) Nunivak Island; and 4) Bristol Bay. During the summer period, four of the six areas were centered on the greater Bering Strait region and the northwestern coast of Alaska and included most of the species we examined. The two remaining summer areas were in the western Canadian Arctic and were largely defined by the seasonal presence of Bering-Chukchi-Beaufort stock bowhead whales and Eastern Beaufort Sea stock beluga whales, whose distribution overlapped during both summer and winter periods. During the winter period, the main multi-species core use area was located near the Gulf of Anadyr and extended northwards through Anadyr and Bering Straits. This area is contained within the Bering Sea “green belt”, an area of enhanced primary and secondary productivity in the Bering Sea. We also described available telemetry data and where they can be found as of 2017. These data are important for understanding ice-associated marine mammal movements and habitat use in the Pacific Arctic and should be archived, with appropriate metadata, to ensure they are available for future retrospective analyses.

Deep Sea Research Part II: Topical Studies in Ocea↗
USGS2024

Fairweather transform boundary Oligocene to present orogenesis: Fairweather Range vertical extrusion and rotation of the Yakutat microplate at ca. 3 Ma

Oblique-slip along transform fault boundaries is often partitioned between a strike-slip system and thrust faults that accommodate contraction. However, topography along the Yakutat-North American transform (Fairweather fault), is asymmetric with low-terrain above active thrusts on the western, Yakutat side of the transform and high topography on the continental side with peaks >4500 m (Mount Fairweather: 4671 m) to the west of the Border Ranges fault, limited recorded earthquakes >M4, and no apparent reverse faults to generate the highest terrain. In this study we compile, for the first time, published U-Pb zircon, 40 Ar/ 39 Ar and K-Ar (hornblende, muscovite, and biotite) and U-Th/He and fission-track (zircon and apatite) bedrock ages (109) from 75 samples to investigate the exhumation history of the Fairweather Range region, complemented by a published detrital sample (ZFT and AFT) and 13 new 40 Ar/ 39 Ar (hornblende, biotite, and K-feldspar) ages on 9 bedrock samples from both sides of the Fairweather fault. Additionally, we examined published seismicity and geodetic data of the Fairweather region and assessed if plate paleo-vectors correlate with the cooling history of the Fairweather Range. Cooling age, seismic, and block-motion patterns indicate the Fairweather Range has been vertically extruded between the Fairweather and the Border Ranges faults as a coherent block since ca. 25 Ma. The pre-6 Ma Pacific plate motion (N30°W) aligns with the N33°W strike of the Fairweather Fault whereas a hypothetical pre-6 Ma Yakutat microplate paleo-vector of (N39°W) does not: indicating a post-6 Ma timing for Yakutat microplate counter-clockwise rotation (9°). We infer that rotation and impingement of the Yakutat microplate along the Fairweather fault at ca. 3 Ma led to the development of the Fairweather restraining bend and increased cooling rates. The resultant thickened Fairweather welt and the ∼30 km thick southeast end of the Yakutat microplate compounded double-indenter tectonics into Alaska's southeast convergent corner

Tectonophysics↗
USGS2024

Turbidite correlation for paleoseismology

Marine turbidite paleoseismology relies on the assumption of synchronous triggering of turbidity currents by earthquake shaking to infer rupture extent and recurrence. Such inference commonly depends on age dating and correlation of the physical stratigraphy of deposits carried by turbidity currents (i.e., turbidites) across great distances. Along the Cascadia subduction zone, which lies offshore the Pacific Northwest, USA, turbidite facies in core photographs, X-ray computed tomography images, and magnetic susceptibility (MS) data exhibit differences in character over relatively short distances, which implies that not all deposits can be correlated with confidence. Thus, subjective correlation based on expected similarity over great distances and weak age constraints does not independently support paleoseismic models. We present a new method for correlating turbidites along the Cascadia margin that can yield a more objective and repeatable stratigraphic framework to underpin earthquake recurrence. We use dynamic time warping to correlate MS logs and measure correlation coefficients of core pairs to evaluate correlation strength. We then compare these measures to a distribution of correlation coefficients of randomly generated turbidite sequences and find that only a small number of core pairs can be correlated more confidently than randomly stacked turbidites. This methodology promises a more robust correlation strategy for future stratigraphic studies.

Oregon, Washington↗
USGS1994

Late Pliocene climate change 3.4-2.3 Ma: paleoceanographic record from the Yabuta Formation, Sea of Japan

Late Pliocene paleoceanographic changes in the Sea of Japan between 3.4 and2.3 Ma were investigated through study of molluscs, diatoms, and ostracodes from the Yabuta Formation in Toyama Prefecture. The period 3.4-2.7 Ma was characterized by relatively high sea level and cool water benthic faunas. A progressive paleoceanographic shift towards colder oceanic conditions and lower sea level occurred beginning near 2.7 Ma, intensifying about 2.5 Ma, when important changes in ostracode and molluscan faunas occurred. Between 2.7 and 2.3 Ma, eight glacial events can be inferred based on drops in sea level of 50-60 m and increasing proportions of cold, shallow water ostracode species whose modern ecology and zoogeography indicate colder winter water temperatures (3-4??C). The glacial events between 2.5 and 2.3 Ma were the most intense. Preliminary interpretation of the faunal and oceanographic events of the Yabuta Formation suggests that they correspond to Northern Hemispheric cooling also known from North Atlantic deep-sea oxygen isotope, IRD, and planktic foraminiferal records, North Pacific diatom and radiolarian record, and the Chinese loess sequences. The eight glacial events may record a 41,000-yr obliquity cycle which characterized other late Pliocene climate proxy records. Inferred sea level drops near 2.5-2.3 Ma of about 50-60 m provide direct evidence from an ocean margin setting that supports deep sea oxygen isotopic evidence indicating major changes in global ice volume changes.

Palaeogeography, Palaeoclimatology, Palaeoecology↗
USGS2009

Occurrence and distribution of iron, manganese, and selected trace elements in ground water in the glacial aquifer system of the northern United States

Dissolved trace elements, including iron and manganese, are often an important factor in use of ground water for drinking-water supplies in the glacial aquifer system of the United States. The glacial aquifer system underlies most of New England, extends through the Midwest, and underlies portions of the Pacific Northwest and Alaska. Concentrations of dissolved trace elements in ground water can vary over several orders of magnitude across local well networks as well as across regions of the United States. Characterization of this variability is a step toward a regional screening-level assessment of potential human-health implications. Ground-water sampling, from 1991 through 2003, of the National Water-Quality Assessment (NAWQA) Program of the U.S. Geological Survey determined trace element concentrations in water from 847 wells in the glacial aquifer system. Dissolved iron and manganese concentrations were analyzed in those well samples and in water from an additional 743 NAWQA land-use and major-aquifer survey wells. The samples are from monitoring and water-supply wells. Concentrations of antimony, barium, beryllium, cadmium, chromium, cobalt, copper, iron, lead, manganese, molybdenum, nickel, selenium, strontium, thallium, uranium, and zinc vary as much within NAWQA study units (local scale; ranging in size from a few thousand to tens of thousands of square miles) as over the entire glacial aquifer system. Patterns of trace element concentrations in glacial aquifer system ground water were examined by using techniques suitable for a dataset with zero to 80 percent of analytical results reported as below detection. During the period of sampling, the analytical techniques changed, which generally improved the analytical sensitivity. Multiple reporting limits complicated the comparison of detections and concentrations. Regression on Order Statistics was used to model probability distributions and estimate the medians and other quantiles of the trace element concentrations. Strontium and barium were the most frequently detected and usually were present in the highest concentrations. Iron and manganese were the next most commonly detected and next highest in concentrations. Iron concentrations were the most variable with respect to the range of variations (both within local networks and aquifer-wide) and with respect to the disparity between magnitude of concentrations (detections) and the frequency of samples below reporting limits (nondetections). Antimony, beryllium, cadmium, silver, and thallium were detected too infrequently for substantial interpretation of their occurrence or distributions or potential human-health implications. For those elements that were more frequently detected, there are some geographic patterns in their occurrence that primarily reflect climate effects. The highest concentrations of several elements were found in the West-Central glacial framework area (High Plains and northern Plains areas). There are few important patterns for any element in relation to land use, well type, or network type. Shallow land-use (monitor) wells had iron concentrations generally lower than the glacial aquifer system wells overall and much lower than major-aquifer survey wells, which comprise mostly private- and public-supply wells. Unlike those for iron, concentration patterns for manganese were similar among shallow land-use wells and major-aquifer survey wells. An apparent relation between low pH and relatively low concentrations of many elements, except lead, may be more indicative of the relatively low dissolved-solids content in wells in the Northeastern United States that comprise the majority of low pH wells, than of a pH dependent pattern. Iron and manganese have higher concentrations and larger ranges of concentrations especially under more reducing conditions. Dissolved oxygen and well depth were related to iron and manganese concentrations. Redox conditions also affect several trace elements such as arsenic and copper; however, a comparison of redox categories, based in part on iron and manganese concentrations, indicated that the concentrations of many redox-sensitive elements were not significantly different among redox categories. Some of the redox-related patterns were not what would be expected on the basis of solubility constraints. Furthermore, barium is affected by redox conditions in at least one well network even though it is not a redox-sensitive element. Concentrations of barium in portions of the glacial aquifer system are limited by sulfate, which is strongly affected by redox conditions. Few samples had concentrations of any trace element that exceeded drinking-water standards (Maximum Contaminant Levels), for compounds regulated in drinking water or Health-Based Screening Levels for unregulated trace elements. More unregulated trace elements had concentrations greater than benchmarks than regulated trace elements. More samples had manganese concentrations greater its benchmark than any other element in the glacial aquifer system wells. Of the 1,590 wells sampled for manganese, only 556 are for private or public drinking-water supplies, and of those, 9.9 percent (55) exceeded the manganese Lifetime Health Advisory. Concentrations of arsenic, selenium, and uranium less frequently exceeded Maximum Contaminant Levels. There are 29 wells that had 2 element concentrations that exceeded their respective benchmarks. Most concentrations that exceeded a health-based benchmark were from wells in the West-Central area (Iowa, Minnesota, North and South Dakota, Nebraska, and Kansas); however, there is little geographical pattern to the wells with element concentrations of concern.

Scientific Investigations Report↗
USGS2013

Application of the SPARROW model to assess surface-water nutrient conditions and sources in the United States Pacific Northwest

The watershed model SPARROW (Spatially Referenced Regressions on Watershed attributes) was used to estimate mean annual surface-water nutrient conditions (total nitrogen and total phosphorus) and to identify important nutrient sources in catchments of the Pacific Northwest region of the United States for 2002. Model-estimated nutrient yields were generally higher in catchments on the wetter, western side of the Cascade Range than in catchments on the drier, eastern side. The largest source of locally generated total nitrogen stream load in most catchments was runoff from forestland, whereas the largest source of locally generated total phosphorus stream load in most catchments was either geologic material or livestock manure (primarily from grazing livestock). However, the highest total nitrogen and total phosphorus yields were predicted in the relatively small number of catchments where urban sources were the largest contributor to local stream load. Two examples are presented that show how SPARROW results can be applied to large rivers—the relative contribution of different nutrient sources to the total nitrogen load in the Willamette River and the total phosphorus load in the Snake River. The results from this study provided an understanding of the regional patterns in surface-water nutrient conditions and should be useful to researchers and water-quality managers performing local nutrient assessments.

Pacific Northwest↗
USGS2014

Competitive interactions and resource partitioning between northern spotted owls and barred owls in western Oregon

The federally threatened northern spotted owl ( Strix occidentalis caurina ) is the focus of intensive conservation efforts that have led to much forested land being reserved as habitat for the owl and associated wildlife species throughout the Pacific Northwest of the United States. Recently, however, a relatively new threat to spotted owls has emerged in the form of an invasive competitor: the congeneric barred owl ( S. varia ). As barred owls have rapidly expanded their populations into the entire range of the northern spotted owl, mounting evidence indicates that they are displacing, hybridizing with, and even killing spotted owls. The range expansion by barred owls into western North America has made an already complex conservation issue even more contentious, and a lack of information on the ecological relationships between the 2 species has hampered recovery efforts for northern spotted owls. We investigated spatial relationships, habitat use, diets, survival, and reproduction of sympatric spotted owls and barred owls in western Oregon, USA, during 2007–2009. Our overall objective was to determine the potential for and possible consequences of competition for space, habitat, and food between these previously allopatric owl species. Our study included 29 spotted owls and 28 barred owls that were radio-marked in 36 neighboring territories and monitored over a 24-month period. Based on repeated surveys of both species, the number of territories occupied by pairs of barred owls in the 745-km 2 study area (82) greatly outnumbered those occupied by pairs of spotted owls (15). Estimates of mean size of home ranges and core-use areas of spotted owls (1,843 ha and 305 ha, respectively) were 2–4 times larger than those of barred owls (581 ha and 188 ha, respectively). Individual spotted and barred owls in adjacent territories often had overlapping home ranges, but interspecific space sharing was largely restricted to broader foraging areas in the home range with minimal spatial overlap among core-use areas. We used an information-theoretic approach to rank discrete-choice models representing alternative hypotheses about the influence of forest conditions, topography, and interspecific interactions on species-specific patterns of nighttime resource selection. Spotted owls spent a disproportionate amount of time foraging on steep slopes in ravines dominated by old (>120 yr) conifer trees. Barred owls used available forest types more evenly than spotted owls, and were most strongly associated with patches of large hardwood and conifer trees that occupied relatively flat areas along streams. Spotted and barred owls differed in the relative use of old conifer forest (greater for spotted owls) and slope conditions (steeper slopes for spotted owls), but we found no evidence that the 2 species differed in their use of young, mature, and riparian-hardwood forest types. Mean overlap in proportional use of different forest types between individual spotted owls and barred owls in adjacent territories was 81% (range = 30–99%). The best model of habitat use for spotted owls indicated that the relative probability of a location being used was substantially reduced if the location was within or in close proximity to a core-use area of a barred owl. We used pellet analysis and measures of food-niche overlap to determine the potential for dietary competition between spatially associated pairs of spotted owls and barred owls. We identified 1,223 prey items from 15 territories occupied by spotted owls and 4,299 prey items from 24 territories occupied by barred owls. Diets of both species were dominated by nocturnal mammals, but diets of barred owls included many terrestrial, aquatic, and diurnal prey species that were rare or absent in diets of spotted owls. Northern flying squirrels ( Glaucomys sabrinus ), woodrats ( Neotoma fuscipes , N. cinerea ), and lagomorphs ( Lepus americanus , Sylvilagus bachmani ) were primary prey for both owl species, accounting for 81% and 49% of total dietary biomass for spotted owls and barred owls, respectively. Mean dietary overlap between pairs of spotted and barred owls in adjacent territories was moderate (42%; range = 28–70%). Barred owls displayed demographic superiority over spotted owls; annual survival probability of spotted owls from known-fate analyses (0.81, SE = 0.05) was lower than that of barred owls (0.92, SE = 0.04), and pairs of barred owls produced an average of 4.4 times more young than pairs of spotted owls over a 3-year period. We found a strong, positive relationship between seasonal (6-month) survival probabilities of both species and the proportion of old (>120 yr) conifer forest within individual home ranges, which suggested that availability of old forest was a potential limiting factor in the competitive relationship between these 2 species. The annual number of young produced by spotted owls increased linearly with increasing distance from a territory center of a pair of barred owls, and all spotted owls that attempted to nest within 1.5 km of a nest used by barred owls failed to successfully produce young. We identified strong associations between the presence of barred owls and the behavior and fitness potential of spotted owls, as shown by changes in movements, habitat use, and reproductive output of spotted owls exposed to different levels of spatial overlap with territorial barred owls. When viewed collectively, our results support the hypothesis that interference competition with barred owls for territorial space can constrain the availability of critical resources required for successful recruitment and reproduction of spotted owls. Availability of old forests and associated prey species appeared to be the most strongly limiting factors in the competitive relationship between these species, indicating that further loss of these conditions can lead to increases in competitive pressure. Our findings have broad implications for the conservation of spotted owls, as they suggest that spatial heterogeneity in vital rates may not arise solely because of differences among territories in the quality or abundance of forest habitat, but also because of the spatial distribution of a newly established competitor. Experimental removal of barred owls could be used to test this hypothesis and determine whether localized control of barred owl numbers is an ecologically practical and socio-politically acceptable management tool to consider in conservation strategies for spotted owls.

Oregon↗
USGS2012

A 28,000 year history of vegetation and climate from Lower Red Rock Lake, Centennial Valley, Southwestern Montana, USA

A sediment core extending to 28,000 cal yr BP from Lower Red Rock Lake in the Centennial Valley of southwestern Montana provides new information on the nature of full-glacial vegetation as well as a history of late-glacial and Holocene vegetation and climate in a poorly studied region. Prior to 17,000 cal yr BP, the eastern Centennial Valley was occupied by a large lake (Pleistocene Lake Centennial), and valley glaciers were present in adjacent mountain ranges. The lake lowered upon erosion of a newly formed western outlet in late-glacial time. High pollen percentages of Juniperus, Poaceae, Asteraceae, and other herbs as well as low pollen accumulation rates suggest sparse vegetation cover. Inferred cold dry conditions are consistent with a strengthened glacial anticyclone at this time. Between 17,000 and 10,500 cal yr BP, high Picea and Abies pollen percentages suggest a shift to subalpine parkland and warmer conditions than before. This is attributed to the northward shift of the jet stream and increasing summer insolation. From 10,500 to 7100 cal yr BP, pollen evidence of open dry forests suggests warm conditions, which were likely a response to increased summer insolation and a strengthened Pacific subtropical high-pressure system. From 7100 to 2400 cal yr BP, cooler moister conditions promoted closed forest and wetlands. Increases in Picea and Abies pollen percentages after 2400 cal yr BP suggest increasing effective moisture. The postglacial pattern of Pseudotsuga expansion indicates that it arrived later on the Atlantic side of the Continental Divide than on the Pacific side. The Divide may have been a physical barrier for refugial populations or it delimited different climate regions that influenced the timing of Pseudotsuga expansion.

Montana↗
USGS2012

Fat or lean: adjustment of endogenous energy stores to predictable and unpredictable changes in allostatic load

1. The ability to store energy endogenously is an important ecological mechanism that allows animals to buffer predictable and unpredictable variation in allostatic load. The secretion of glucocorticoids, which reflects changes in allostatic load, is suggested to play a major role in the adjustment of endogenous stores to these varying conditions. 2. Although crucially important, the relationship between allostatic load and energy stores remains largely unexplored. Two contrasting hypotheses describe how stores may be adjusted: animals may use low allostatic loads to increase stores to a maximum possible (‘fat and fit’), or they can attain a lean physique due to fitness advantages of a low body mass (‘lean and fit’). 3. We compiled observational and experimental data available for a long-lived seabird to examine the relationship between glucocorticoids and stored energy at two life history stages (incubation and chick-rearing). Data were collected across multiple years and colonies in the North Pacific, thereby reflecting the wide range of environmental conditions birds' encounter in the marine environment. During experimental manipulations, allostatic load was minimized by supplementing food to free-living birds. 4. We found that the relationship between allostatic load and energy stores was clearly curvilinear at both life history stages. Observational data suggested that energy stores remained relatively stable under low allostatic load and decreased under high loads. Experimental data showed that birds did not maximize energy stores under favourable conditions but maintained energy stores below a physiologically attainable level. 5. Energy stores remained consistently lower during chick-rearing compared to incubation across the wide range of variations in allostatic load suggesting that stage-specific trade-offs limit the accumulation of energy during favourable environmental conditions. Secretion of glucocorticoids did not appear to mediate this shift in energy stores between the life history stages. 6. Overall, results of this study support the ‘lean and fit’ hypothesis. We conclude that increased energy stores may not necessarily reflect better environmental conditions experienced by individuals or predict their higher fitness. A major advantage of adopting a lean physique when environmental conditions allow may be the avoidance of additional energetic costs for moving a heavy body. In breeding seabirds, this advantage may be more important during chick-rearing. In the focal species, the secretion of glucocorticoids might be involved in regulation of energy stores within a life history stage but does not appear to mediate an adaptive shift in energy stores between the incubating and chick-rearing stages of reproduction.

Functional Ecology↗
USGS2015

The dynamics of avian influenza in western Arctic snow geese: implications for annual and migratory infection patterns

Wild water birds are the natural reservoir for low-pathogenic avian influenza viruses (AIV). However, our ability to investigate the epizootiology of AIV in these migratory populations is challenging, and despite intensive worldwide surveillance, remains poorly understood. We conducted a cross-sectional, retrospective analysis in Pacific Flyway lesser snow geese Chen caerulescens to investigate AIV serology and infection patterns. We collected nearly 3,000 sera samples from snow geese at 2 breeding colonies in Russia and Canada during 1993-1996 and swab samples from > 4,000 birds at wintering and migration areas in the United States during 2006-2011. We found seroprevalence and annual seroconversion varied considerably among years. Seroconversion and infection rates also differed between snow goose breeding colonies and wintering areas, suggesting that AIV exposure in this gregarious waterfowl species is likely occurring during several phases (migration, wintering and potentially breeding areas) of the annual cycle. We estimated AIV antibody persistence was longer (14 months) in female geese compared to males (6 months). This relatively long period of AIV antibody persistence suggests that subtype-specific serology may be an effective tool for detection of exposure to subtypes associated with highly-pathogenic AIV. Our study provides further evidence of high seroprevalence in Arctic goose populations, and estimates of annual AIV seroconversion and antibody persistence for North American waterfowl. We suggest future AIV studies include serology to help elucidate the epizootiological dynamics of AIV in wild bird populations.

Ecological Applications↗
USGS2016

Using smooth sheets to describe groundfish habitat in Alaskan waters, with specific application to two flatfishes

In this analysis we demonstrate how preferred fish habitat can be predicted and mapped for juveniles of two Alaskan groundfish species – Pacific halibut ( Hippoglossus stenolepis ) and flathead sole ( Hippoglossoides elassodon ) – at five sites (Kiliuda Bay, Izhut Bay, Port Dick, Aialik Bay, and the Barren Islands) in the central Gulf of Alaska. The method involves using geographic information system (GIS) software to extract appropriate information from National Ocean Service (NOS) smooth sheets that are available from NGDC (the National Geophysical Data Center). These smooth sheets are highly detailed charts that include more soundings, substrates, shoreline and feature information than the more commonly-known navigational charts. By bringing the information from smooth sheets into a GIS, a variety of surfaces, such as depth, slope, rugosity and mean grain size were interpolated into raster surfaces. Other measurements such as site openness, shoreline length, proportion of bay that is near shore, areas of rocky reefs and kelp beds, water volumes, surface areas and vertical cross-sections were also made in order to quantify differences between the study sites. Proper GIS processing also allows linking the smooth sheets to other data sets, such as orthographic satellite photographs, topographic maps and precipitation estimates from which watersheds and runoff can be derived. This same methodology can be applied to larger areas, taking advantage of these free data sets to describe predicted groundfish essential fish habitat (EFH) in Alaskan waters.

Alaska↗
USGS2026

Post-wildfire water quality and aquatic ecosystem response in the U.S. Pacific Northwest: science and monitoring gaps

An increase in the occurrence of large, high severity wildfires in the western Pacific Northwest (PNW), USA, has created an urgent need for science to better inform forest management and policy decisions to maintain source water quality in the region. The western PNW faces similar challenges to other regions with shifting wildfire regimes and large population centers reliant on surface water from forested catchments. However, the uniquely wet and highly seasonal climate of the western PNW suggests that findings from other, more frequently burned regions may not be directly applicable. To identify science, monitoring, and management gaps and opportunities in the western PNW, this review was collaboratively undertaken by academics, non-government and industry representatives, and local, state, and federal government entities who have been working together since the 2020 Labor Day fires in Oregon. Focusing on Oregon and Washington, we found that monitoring networks for continuous water quantity and quality cover much of the state with greater representation in western U.S. ecoregions, but few studies have analyzed and published these data to capture and communicate the post-wildfire response. Approximately half of the streamgages in Oregon and Washington record major water quality parameters, and hundreds of sites in the area have discrete sampling for a wide range of water quality constituents. Still, numerous gaps exist in understanding the short- and long-term impacts of wildfire on hydrology, water chemistry, including pH and dissolved oxygen, mobilization of metals, aquatic ecosystems, and downstream drinking water treatment. Collective action to further collect, analyze, interpret, and publish the key data could help improve our understanding of post-wildfire water quality impacts in this and other increasingly wildfire-affected regions.

Oregon, Washington↗
USGS2022

Thermal heterogeneity and cold-water anomalies within the lower Yakima River, Yakima and Benton Counties, Washington

Warm water temperatures in the lower Yakima River in central Washington are key limitations to the restoration of Pacific salmon ( Onchorhynchus spp .) populations within the Yakima River Basin. Identification of the location and magnitude of cold-water anomalies, which are cooler than ambient river temperatures during summer months, and the processes that create and maintain them is needed to inform salmon restoration efforts within the Yakima River Basin. Longitudinal thermal profiles of nine reaches in the lower Yakima River were surveyed at ambient river velocity during summer 2018 when surface-water temperatures were near their annual maximum and the difference between surface-water and groundwater temperatures was greatest. The profiles were compared to previously published profiles of the same reaches measured in 2001, 2002, 2008, and 2009, and analyzed in the context of hydrologic, geomorphic, and hydrogeologic conditions that may create and maintain cold-water inputs to the river. Cold-water anomalies that departed from expected diurnal increases in water temperature were measured in all nine study reaches and were attributed to diffuse groundwater discharge through the streambed, discrete groundwater discharge at seeps and springs, and cold-water tributaries entering the river. Some cold-water anomalies were measured during repeated surveys in different years, whereas other cold-water anomalies did not persist across surveys. Additionally, some discrete cold-water anomalies were confined to one side of the channel, but others associated with diffuse groundwater discharge were present across the channel for several river miles. Hydrogeologic conditions including the extent and thickness of aquifers connected to the Yakima River, geomorphic conditions including channel gradient, channel geometry, and floodplain extent, and the location of tributaries, irrigation returns, and other surface-water inputs created the large-scale conditions that facilitate the formation and maintenance of cold-water anomalies. Finer-scale geomorphic features such as side channels, gravel-bar alcoves, deep pools, and other locations, where colder water collected and remained relatively unmixed with upstream surface water, were also important factors in the occurrence and distribution of cold-water anomalies. These hydrogeologic and geomorphic conditions, coupled with the alteration of the Yakima River’s hydrologic regime to support irrigation within the Yakima Valley, contributed to the surveyed distribution of cold-water anomalies within the river.

Washington↗
USGS2014

North Atlantic migratory bird flyways provide routes for intercontinental movement of avian influenza viruses

Avian influenza virus (AIV) in wild birds has been of increasing interest over the last decade due to the emergence of AIVs that cause significant disease and mortality in both poultry and humans. While research clearly demonstrates that AIVs can move across the Pacific or Atlantic Ocean, there has been no data to support the mechanism of how this occurs. In spring and autumn of 2010 and autumn of 2011 we obtained cloacal swab samples from 1078 waterfowl, gulls, and shorebirds of various species in southwest and west Iceland and tested them for AIV. From these, we isolated and fully sequenced the genomes of 29 AIVs from wild caught gulls (Charadriiformes) and waterfowl (Anseriformes) in Iceland. We detected viruses that were entirely (8 of 8 genomic segments) of American lineage, viruses that were entirely of Eurasian lineage, and viruses with mixed American-Eurasian lineage. Prior to this work only 2 AIVs had been reported from wild birds in Iceland and only the sequence from one segment was available in GenBank. This is the first report of finding AIVs of entirely American lineage and Eurasian lineage, as well as reassortant viruses, together in the same geographic location. Our study demonstrates the importance of the North Atlantic as a corridor for the movement of AIVs between Europe and North America.

North Atlantic↗
USGS2019

Serologic evidence for influenza A virus exposure in three loon species (Gavia spp.) breeding in Alaska

Limited information exists about exposure to influenza A viruses (IAVs) in many wild waterbird species, including loons. We analyzed serum samples from breeding adult Pacific ( Gavia pacifica ), Red-throated ( Gavia stellata ), and Yellow-billed ( Gavia adamsii ) loons sampled at three locations along the coast of Alaska, US from 2008 to 2017 to gain a better understanding of the potential role loons play in IAV ecology. We screened loon sera for IAV antibodies using three tests—blocking enzyme-linked immunosorbent assay (bELISA), agar gel immunodiffusion (AGID), and hemagglutination inhibition (HI)—and examined patterns in seroprevalence among species and sampling locations. We found evidence of IAV infection in all loon species and at all breeding locations, although concordance was imperfect among serological tests. Diagnostic tests yielded seroprevalence estimates of 24% (42/172) with bELISA, 8% (5/60) with AGID, and 6% (4/70) with HI. The IAV subtypes to which loon sera reacted using HI were consistent with those detected in waterfowl and gulls at other locations in Alaska, suggesting that loons may be exposed to IAV maintained in sympatric waterbirds. Our study provided evidence that loons inhabiting Alaska were exposed to IAV. However, given imperfect concordance among serologic tests, and relatively low seroprevalence as compared to other avian taxa exposed to IAV in Alaska, they make poor IAV surveillance targets.

Alaska↗
USGS2018

Defining the risk landscape in the context of pathogen pollution: Toxoplasma gondii in sea otters along the Pacific Rim

Pathogens entering the marine environment as pollutants exhibit a spatial signature driven by their transport mechanisms. The sea otter ( Enhydra lutris ), a marine animal which lives much of its life within sight of land, presents a unique opportunity to understand land–sea pathogen transmission. Using a dataset on Toxoplasma gondii prevalence across sea otter range from Alaska to California, we found that the dominant drivers of infection risk vary depending upon the spatial scale of analysis. At the population level, regions with high T. gondii prevalence had higher human population density and a greater proportion of human-dominated land uses, suggesting a strong role for population density of the felid definitive host of this parasite. This relationship persisted when a subset of data were analysed at the individual level: large-scale patterns in sea otter T. gondii infection prevalence were largely explained by individual exposure to areas of high human housing unit density, and other landscape features associated with anthropogenic land use, such as impervious surfaces and cropping land. These results contrast with the small-scale, within-region analysis, in which age, sex and prey choice accounted for most of the variation in infection risk, and terrestrial environmental features provided little variation to help in explaining observed patterns. These results underscore the importance of spatial scale in study design when quantifying both individual-level risk factors and landscape-scale variation in infection risk.

California↗
USGS2002

Simulations of seismic hazard for the Pacific Northwest of the United States from earthquakes associated with the Cascadia subduction zone

We investigate the impact of different rupture and attenuation models for the Cascadia subduction zone by simulating seismic hazard models for the Pacific Northwest of the U.S. at 2% probability of exceedance in 50 years. We calculate the sensitivity of hazard (probabilistic ground motions) to the source parameters and the attenuation relations for both intraslab and interface earthquakes and present these in the framework of the standard USGS hazard model that includes crustal earthquakes. Our results indicate that allowing the deep intraslab earthquakes to occur anywhere along the subduction zone increases the peak ground acceleration hazard near Portland, Oregon by about 20%. Alternative attenuation relations for deep earthquakes can result in ground motions that differ by a factor of two. The hazard uncertainty for the plate interface and intraslab earthquakes is analyzed through a Monte-Carlo logic tree approach and indicates a seismic hazard exceeding 1 g (0.2 s spectral acceleration) consistent with the U.S. National Seismic Hazard Maps in western Washington, Oregon, and California and an overall coefficient of variation that ranges from 0.1 to 0.4. Sensitivity studies indicate that the paleoseismic chronology and the magnitude of great plate interface earthquakes contribute significantly to the hazard uncertainty estimates for this region. Paleoseismic data indicate that the mean earthquake recurrence interval for great earthquakes is about 500 years and that it has been 300 years since the last great earthquake. We calculate the probability of such a great earthquake along the Cascadia plate interface to be about 14% when considering a time-dependent model and about 10% when considering a time-independent Poisson model during the next 50-year interval.

Pure and Applied Geophysics↗