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Specimens are used to provide supporting information leading to the diagnosis of a cause of disease or death. A specimen may be an intact carcass, tissues removed from carcasses, parasites, ingested food, feces, or environmental samples. The specimen should be as fresh and undamaged as possible.
The analysis and characterization of competing risks for water resources rely on a wide spectrum of tools to evaluate hazards and risks associated with their management. For example, waters of the lower Colorado River stored in reservoirs such as Lake Mead present a wide range of competing risks related to water quantity and water quality. These risks are often interdependent and complicated by competing uses of source waters for sustaining biological resources and for supporting a range of agricultural, municipal, recreational, and industrial uses. USGS is currently conducting a series of interdisciplinary case-studies on water quality of Lake Mead and its source waters. In this case-study we examine selected constituents potentially entering the Lake Mead system, particularly endocrine disrupting chemicals (EDCs). Worldwide, a number of environmental EDCs have been identified that affect reproduction, development, and adaptive behaviors in a wide range of organisms. Many EDCs are minimally affected by current treatment technologies and occur in treated sewage effluents. Several EDCs have been detected in Lake Mead, and several substances have been identified that are of concern because of potential impacts to the aquatic biota, including the sport fishery of Lake Mead and endangered razorback suckers (Xyrauchen texanus) that occur in the Colorado River system. For example, altered biomarkers relevant to reproduction and thyroid function in fishes have been observed and may be predictive of impaired metabolism and development. Few studies, however, have addressed whether such EDC-induced responses observed in the field have an ecologically significant effect on the reproductive success of fishes. To identify potential linkages between EDCs and species of management concern, the risk analysis and characterization in this reconnaissance study focused on effects (and attendant uncertainties) that might be expressed by exposed populations. In addition, risk reduction measures that may be of interest to resource managers are considered relative to emerging contaminants in treated effluents, interdependencies among biological resources at risk, and uses of reservoir waters derived from multiple inflows of widely varying qualities. ??2009 ASCE.
Tellurium (Te) is a critical element due to its use in solar technology. However, some forms are highly toxic. Few studies have examined Te behavior in the surficial environment, thus little is known about its potential human and environmental health impacts. This study characterizes two physicochemically distinct Te-enriched mine tailings piles (big and flat tailings) deposited by historic gold (Au) mining in the semi-arid Delamar mining district, Nevada. The big tailings are characterized by smaller particle size and higher concentrations of potentially toxic elements (up to 290 mg Te kg-1), which are enriched at the tailings surface. In contrast, the flat tailings have larger particle size and properties that are relatively invariant with depth. Based on the sulfate to sulfide ratio, the tailings were determined to be sulfate dominated suggesting a high degree of weathering, although the flat tailings did contain significant amounts of sulfides (~40%). Tellurium x-ray absorption spectroscopy of the big tailings indicates that tellurate, the less toxic Te species, is the principal form of Te. Electron microscopy indicates that most of the Te present at the site is associated with iron (oxy)hydroxides, sometimes with other potentially toxic elements, especially lead and antimony. Physiologically-based extraction tests indicate that substantially more Te is solubilized in synthetic stomach fluids than in lung fluids, with gastric bioaccessibility ranging from 13-31% of total Te. This points to low to medium bioaccessibility, which is common for iron (oxy)hydroxide associated elements. Together, these results represent a preliminary assessment of Te surficial behavior in a semi-arid environment and indicate that Te in these tailings represent a moderate health concern.
Our goal was to understand movement and its interaction with survival for populations of stream salmonids at long-term study sites in the northeastern United States by employing passive integrated transponder (PIT) tags and associated technology. Although our PIT tag antenna arrays spanned the stream channel (at most flows) and were continuously operated, we are aware that aspects of fish behavior, environmental characteristics, and electronic limitations influenced our ability to detect 100% of the emigration from our stream site. Therefore, we required antenna efficiency estimates to adjust observed emigration rates. We obtained such estimates by testing a full-scale physical model of our PIT tag antenna array in a laboratory setting. From the physical model, we developed a statistical model that we used to predict efficiency in the field. The factors most important for predicting efficiency were external radio frequency signal and tag type. For most sampling intervals, there was concordance between the predicted and observed efficiencies, which allowed us to estimate the true emigration rate for our field populations of tagged salmonids. One caveat is that the model's utility may depend on its ability to characterize external radio frequency signals accurately. Another important consideration is the trade-off between the volume of data necessary to model efficiency accurately and the difficulty of storing and manipulating large amounts of data.
Invasive Central American boas ( Boa imperator ) have established a reproducing population on the western side of St. Croix, U.S. Virgin Islands but prevalence throughout the island is largely unknown. The large snakes threaten endemic and endangered species through competition and predation, jeopardizing island biodiversity. Environmental DNA (eDNA) methods were used to investigate occurrence and focal areas for management efforts in the Salt River Bay National Historical Park and Ecological Preserve (SARI). To validate a previously developed assay, we collected tissue samples and 13 × 60 mL water samples from a captive boa enclosure in St. Croix. We implemented this assay for both a pilot and main field sampling effort. The pilot in December 2023 resulted in analysis of 7 × 60 mL water samples per site from SARI (3 sites) and from the western forests where boas are established (1 site). The main sampling event in July 2024 collected 15 × 60 mL water samples per site within SARI (11 sites) and western forests (4 sites). Pilot sample replicates were filtered individually, while main samples were consolidated into groups, resulting in seven replicates for pilot sites and five replicates for main event sites, totaling 103 environmental samples. eDNA was isolated using a modified phenol-chloroform isolation method to remove PCR inhibitors, and target eDNA was amplified using droplet digital PCR technology. Water samples from the captive boa amplified target eDNA in 12 of 13 samples, indicating assay effectiveness ex-situ. Low concentrations of eDNA (below the 95% limit of detection) were amplified in 4 of 5 sites in the western forest and in 8 of 14 sites within the National Historic Park. Overall, boa eDNA concentrations were consistently low, as expected in water samples targeting a semi-arboreal snake species with a low rate of eDNA shedding. Further optimization of methods could enable recovery of greater eDNA concentrations in future studies. Additional eDNA method testing and ground-truthing may help to improve the assessment of invasive Boa imperator in St. Croix.
The U.S. Department of Energy (DOE) is the lead federal agency for the development and deployment of carbon sequestration technologies. The Regional Carbon Sequestration Partnerships (RCSPs) are the mechanism DOE utilizes to prove the technology and to develop human capital, stakeholder networks, information for regulatory policy, best practices documents and training to work toward the commercialization of carbon capture and storage (CCS). The RCSPs are tasked with determining the most suitable technologies, regulations, and infrastructure for carbon capture, transport, and storage in their respective geographic areas of responsibility. The seven partnerships include more than 400 state agencies, universities, national laboratories, private companies, and environmental organizations, spanning 43 states and four Canadian provinces. The Regional Partnerships Initiative is being implemented in three phases: Characterization, Validation, and Development. The initial Characterization Phase began in 2003 and was completed in 2005 and focused on characterization of CO2 storage potential within each region. It was followed by the Validation Phase, which began in 2005 and is nearing completion in 2011. The focus of the Validation Phase has been on small-scale field tests throughout the seven partnerships in various formation types such as saline, oil-bearing, and coal seams. The Validation Phase has characterized suitable CO2 storage reservoirs and identified the need for comprehensive legal and regulatory frameworks to enable commercial-scale CCS deployment. Finally, the Development Phase will consist of a series of large-scale, one-million-ton, injection tests throughout the United States and Canada. The objective of these large-scale tests is to identify the regulatory path or challenges in permitting CCS projects, to demonstrate the technology can inject CO2 safely, and to verify its permanence in geologic formations in preparation for the commercialization of geologic sequestration. ?? 2010 Elsevier Ltd. All rights reserved. ?? 2011 Published by Elsevier Ltd.
North American sapsuckers are considered double keystone species because they (1) excavate nest cavities that are used by other birds, small mammals, and invertebrates, and (2) create and maintain sap wells, a temporary nutritional resource available to a variety of secondary consumers. Most previous reports of secondary sap consumption relied on human observers and were based on either brief or incidental observations. However, modern technology can greatly enhance observational techniques and provide additional insights into the functional, community-level importance of sap wells. We used visual surveys, camera traps, and environmental DNA (eDNA) to identify secondary consumers of sap from wells created by red-naped ( Sphyrapicus nuchalis ) and Williamson's ( S. thyroideus ) sapsuckers among three functional groups of shrubs and trees in south-central Colorado: shrub willows ( Salix spp.), Rocky Mountain maple ( Acer glabrum ), and conifer trees (Pinopsida). Camera traps and eDNA revealed additional sap-well visitors not identified from direct observations. Camera traps were effective for detecting nocturnal sap-well visitors such as small rodents as well as occasional diurnal visitors. Environmental DNA analyses corroborated findings from other methods and identified four additional taxa as possible sap consumers. The physiology of sap-well visitors, such as the ability to taste and assimilate compounds within sap, may aid in determining consumption versus contact when evaluating the results of eDNA analyses. Total vertebrate taxa detected using all 3 methods included 17 bird taxa in 10 families within 3 orders and 8 mammal taxa in 6 families within 4 orders. Shrub-willow sap wells attracted the most diverse vertebrate taxa (23), followed by Rocky Mountain maple (13) and conifer trees (10). Invertebrates in 13 families within 3 orders were observed feeding from sap wells during visual surveys. Because many secondary sap consumers perform ecological services such as pollination, seed dispersal, and pest control, the methods described here may aid in elucidating the importance of sap-well creators in supporting biodiversity and ecosystem functioning.
Uranium mill tailings (UMT) are a high volume, low specific activity radioactive waste typically disposed in surface impoundments. This review focuses on research on UMT and related earth materials during the past decade relevant to the assessment of: (1) mineral hosts of radionuclides; (2) the use of soil analogs in predicting long-term fate of radionuclides; (3) microbial and diagenetic processes that may alter radionuclide mobility in the surficial environment; (4) waste-management technologies to limit radionuclide migration; and (5) the impact of UMT on biota.
The Society of Environmental Toxicology and Chemistry (SETAC) is a global organization whose mission is the advancement of environmental science and the promotion of science-informed decision making. On SETAC’s 45th anniversary, the following question was raised: Are the 1979 founding principles of SETAC, multidisciplinary approaches to solving environmental problems, multisector engagement and scientific objectivity, still relevant to the fulfillment of its mission? In a special session held at the 45th Annual Meeting in Fort Worth, Texas, U.S., a critical evaluation of the founding principles was initiated by reviewing SETAC’s history and ongoing activities, and recommendations were made for the future. With few exceptions, participants appreciated SETAC’s purposeful efforts to approach challenging environmental issues through multisector balance, an approach that is unique amongst scientific societies. We recognized that scientists have biases and views of what they find important, regardless of employing organization, and that objectivity is best served by being aware of these biases and views. SETAC’s founding principles have stood the test of time and continue to provide a strong foundation for the Society’s mission, and with a few suggested improvements, will continue to be instrumental in guiding environmental science, stewardship and policy into the future. The significance of SETAC’s contribution of robust science grounded in reliable evidence and data was recognized as being especially crucial at this time of triple planetary crisis (climate change, pollution and biodiversity loss), compounded by rapid technological developments and geopolitical issues.
The U.S. Department of Energy (DOE) has formed a nationwide network of seven regional partnerships to help determine the best approaches for capturing and permanently storing gases that can contribute to global climate change. The Regional Carbon Sequestration Partnerships (RCSPs) are tasked with determining the most suitable technologies, regulations, and infrastructure for carbon capture, transport, and storage in their areas of the country and parts of Canada. The seven partnerships include more than 350 state agencies, universities, national laboratories, private companies, and environmental organizations, spanning 42 states, two Indian nations, and four Canadian provinces. The Regional Partnerships initiative is being implemented in three phases: ???Characterization Phase (2003-2005): The objective was to collect data on CO 2 sources and sinks and develop the human capital to support and enable future carbon sequestration field tests and deployments. The completion of this Phase was marked by release of the Carbon Sequestration Atlas of the United States and Canada-Version 1 which included a common methodology for capacity assessment and reported over 3,000GT of storage capacity in saline formations, depleted oil and gas fields, and coal seams.???Validation Phase (2005-2009): The objective is to plan and implement small-scale (<1??million tons CO 2 ) field testing of storage technologies in areas determined to be favorable for carbon storage. The partnerships are currently conducting over 20 small-scale geologic field tests and 11 terrestrial field tests.???Development Phase (2008-2018): The primary objective is the development of large-scale (>1??million tons of CO 2 ) Carbon Capture and Storage (CCS) projects, which will demonstrate that large volumes of CO 2 can be injected safely, permanently, and economically into geologic formations representative of large storage capacity. Even though the RCSP Program is being implemented in three phases, it should be viewed as an integrated whole, with many of the goals and objectives transitioning from one phase to the next. Accomplishments and results from the Characterization Phase have helped to refine goals and activities in the Validation and Deployment Phases. The RCSP Program encourages and requires open information sharing among its members by sponsoring both general workshops and meetings to facilitate information exchange. Although each RCSP has its own objectives and field tests, mutual cooperation has been an important part of the Program thus far. The primary goal of the RCSP initiative is to promote the development of a regional framework and the infrastructure necessary to validate and deploy carbon sequestration technologies within each Partnership's region. ?? 2009 Elsevier Ltd. All rights reserved.
Geochemical surveys in relation to health may be classified as having one, two or three dimensions. One-dimensional surveys examine relations between concentrations of elements such as Pb in soils and other media and burdens of the same elements in humans, at a given time. The spatial distributions of element concentrations are not investigated. The primary objective of two-dimensional surveys is to map the distributions of element concentrations, commonly according to stratified random sampling designs based on either conceptual landscape units or artificial sampling strata, but systematic sampling intervals have also been used. Political units have defined sample areas that coincide with the units used to accumulate epidemiological data. Element concentrations affected by point sources have also been mapped. Background values, location of natural or technological anomalies and the geographic scale of variation for several elements often are determined. Three-dimensional surveys result when two-dimensional surveys are repeated to detect environmental changes. -Author
Throughout its history, the United States has made major investments in assessing natural resources, such as soils, timber, oil and gas, and water. These investments allow policy makers, the private sector and the American public to make informed decisions about cultivating, harvesting or conserving these resources to maximize their value for public welfare, environmental conservation and the economy. As policy issues evolve, new priorities and challenges arise for natural resource assessment, and new approaches to monitoring are needed. For example, new technologies for oil and gas development or alternative energy sources may present new risks for water resources both above and below ground. There is a need to evaluate whether today’s water monitoring programs are generating the information needed to answer questions surrounding these new policy priorities. The Northeast-Midwest Institute (NEMWI), in cooperation with the U.S. Geological Survey (USGS) National Water-Quality Assessment (NAWQA) Program, initiated this project to explore the types and amounts of water data needed to address water-quality related policy questions of critical concern to today’s policy makers and whether those data are currently available. The collaborating entities identified two urgent water policy questions and conducted case studies in the Northeast-Midwest region to determine the water data needed, water data available, and the best ways to fill the data gaps relative to those questions. This report details the output from one case study and focuses on the Susquehanna River Basin, a data-rich area expected to be a best-case scenario in terms of water data availability.
The Southeastern United States has many lakes, streams, and reservoirs that serve as important drinking water sources with recreational, agricultural, and ecological uses. However, harmful algal blooms (HABs) are becoming more common in these waters, causing health issues for humans and animals. HABs have been listed as a contaminant of emerging concern, and the magnitude, frequency, and duration of HABs appear to be increasing at the global scale. While it is well known that nutrients stimulate algae growth, it is not clear how climate change and other parameters stimulate the development of toxin production by HABs. The scientific literature describes parameters, such as storm occurrence, temperature, dissolved metals, erosion of soils, increasing length of growing season, discharge, and hydroperiod, that may affect algae growth and toxin production. Climate and hydrologic models address many of the physical and environmental parameters that influence HABs, but no climate models directly address HABs. This report compiles information from the existing literature pertaining to HABs and the modeling and forecasting of HABS. This compilation is done through the incorporation of climate change models. HAB research that involves climate change will require multiple disciplines that bring together ecologists, hydrologists, climatologists, engineers, economists, and new technology. Resource managers could use geographic data about the occurrence and distribution of HABs to develop models that identify waterbodies more vulnerable to HAB events. Development of such models will require teams capable of integrating biological, chemical, and physical factors. Model development will require additional research that can resolve anthropogenic and climate-related environmental factors to identify trends in freshwater HABs. The complexity and interconnectedness of the parameters that influence HAB occurrences will make model development challenging and require rigorous regional calibration.
Cities have important and varying incentives to transform their energy sector to all-electric with low carbon emissions. However, they often encounter a number of impediments when attempting to implement such a change. For example, while urban areas have the highest energy demand-density, cities often lack the space for installing additional energy generation and/or long-duration energy storage systems. Cities also have existing environmental issues from energy sources (e.g., pollution from dust, waste heat or noise) that make residents sensitive to energy infrastructure development. Utilizing power from conventional sources, such as natural gas, biomass and hydropower, which usually are distanced from the urban areas, also make cities more vulnerable to supply disruptions. One promising de-carbonizing energy option for cities focuses on their heating and cooling needs, which constitutes around 1/3 of U.S. and 1/2 of European energy consumption (including industrial processes like drying, pasteurization, etc.; Jadun and others, 2017; EU Commission 2022). If heating and cooling loads can be met by geothermal direct-use technologies, then the need for new electric sources can be greatly lessened. Despite the proven efficacy of geothermal energy as a city/community-scale heating and cooling resource, it is currently only a niche resource in the heating and cooling sector, though has significant potential for future growth. Historically, emphasis has been placed on geothermal electricity generation potential that requires higher temperature (greater than 90 °C) resources at drillable depths, but potentially viable areas are geographically limited and typically well removed from urban centers. Key drivers for investments were represented by greater political interest in renewable electricity production, higher revenues and less effort in distributing the produced energy via grids. In contrast, low-temperature (less than 90 °C) geothermal resources can be used directly for heating and cooling almost everywhere and are cost-effective in urban/suburban settings. In addition, the increased prominence of renewable electricity sources, such as wind and solar onto city-scale electric grids, has led to new urgency around questions of energy storage. Underground thermal energy storage (UTES), wherein surplus or waste heat is stored underground for later use, could present a long-duration energy storage solution. From October 2022 through September 2024, a transcontinental consortium consisting of geological surveys, geoscience organizations, industry representatives and universities aims to develop an understanding of the global potential for city-scale geothermal, proposing guidelines to aid in promoting the economic utilization of low temperature geothermal resources. Efforts will focus on providing city managers and other decision makers with the information needed to evaluate and implement suitable city/community-scale geothermal technologies. Funded by the U.S. Geological Survey’s John Wesley Powell Center for Analysis and Synthesis, this interdisciplinary consortium will showcase tools, datasets, and scientific recommendations to accelerate the broader understanding and adoption of renewable energy systems that access geothermal resources. The collaborative research activities include standardization of nomenclatures, resource description and characterization strategies globally. The results from these activities will be combined with a preliminary climate-driven, city-based energy needs related analysis to perform energy supply/demand matching analysis. The identification of city-specific applications that would benefit from the geothermal technologies provides the basis to up-scale city-specific determinations to regional and national assessments of resource estimates. The city-scale geothermal energy research initiative will ultimately provide the synergies and management analysis that can address benefits, environmental impacts, regulatory frameworks, sustainability, and suitability in retrofitted buildings or new as well as existing heating networks.
Control technology for dreissenid mussels ( Dreissena polymorpha and D. bugensis ) currently relies heavily on chemical molluscicides that can be both costly and ecologically harmful. There is a need for more environmentally neutral tools to manage dreissenid mussels, particularly in cooler water. Carbon dioxide (CO 2 ) has been shown to be lethal to several species of invasive bivalves, including zebra mussels and Asian clams ( Corbicula fluminea ). We evaluated the effectiveness of unpressurized infusion of CO 2 for 24 to 96 h (100 000–300 000 µatm PCO 2 ) at a water temperature of 12 °C on mortality, byssal thread formation, and attachment of zebra mussels. The safety of elevated CO 2 to a nontarget native freshwater mussel (Fatmucket, Lampsilis siliquoidea ) was also determined. Elevated PCO 2 exposure induced narcotization and reduced attachment of zebra mussels within 24 h. Mortality increased with exposure duration and PCO 2 . An estimated LT50 (lethal time to produce 50% mortality) for fixed PCO 2 ranged from 24 h at 275 000 µatm to ~ 96 h at 100 000 µatm. Exposure of zebra mussels to CO 2 for 96 h caused 80–100% mortality at all treatment levels. Fatmucket juveniles survived all PCO 2 treatments but burial and byssal thread production were adversely affected during exposure. Our results demonstrate that CO 2 is a viable option for management of zebra mussels in cool water and may have less adverse effect for native lampsiline mussels than current-use molluscicides.
Fry mortality which was first observed in the late 1960s in Great Lakes salmonines and in Baltic Sea salmon in 1974 has now been linked to thiamine deficiency (historically referred to as Early Mortality Syndrome, or EMS and M74, respectively). Over the past 14 years significant strides have been made in our understanding of this perplexing problem. It is now known that thiamine deficiency causes embryonic mortality in these salmonids. Both overt mortality and secondary effects of thiamine deficiency are observed in juvenile and adult animals. Collectively the morbidity and mortality (fry and adult mortality, secondary metabolic and behavior affects in juveniles and adult fish) are referred to as Thiamine Deficiency Complex (TDC). A workshop was held in Ann Arbor, MI on 6-7 November 2008 that brought together 38 federal, state, provincial, tribal and university scientists to share information, present data and discuss the latest observations on thiamine status of aquatic animals with thiamine deficiency and the causative agent, thiaminase. Twenty presentations (13 oral and 7 posters) detailed current knowledge. In Lake Huron, low alewife Alosa pseudoharengus abundance has persisted and egg thiamine concentrations in salmonines continue to increase, along with evidence of natural reproduction in lake trout Salvelinus namaycush. Lake Michigan Chinook salmon Oncorhynchus tshawytscha appear to have a lower thiamine requirement than other salmonids in the lake. Lake Ontario American eel Anguilla rostrata foraging on alewife have approximately one third the muscle thiamine compared to eels not feeding on alewife, suggesting that eels may be suffering from thiamine deficiency. Secondary effects of low thiamine exist in Great Lakes salmonines and should not be ignored. Thiaminase activity in dreissenid mussels is extremely high but a connection to TDC has not been made. Thiaminase in net plankton was found more consistently in lakes Michigan and Ontario than other lakes evaluated. The biological role of thiaminase I, associated with thiamine deficiency, remains to be determined whereas thiaminase II has been reported to be part of a salvage pathway leading to thiamine synthesis. The use of gene array technology and 3-dimensional histology is adding new understanding to the affects of thiamine deficiency. Research is needed to determine the thiamine status of species feeding on dreissenids, the environmental sources of thiaminase and the biological role of thiaminase I.
Use cases, information modeling, and linked data techniques are Semantic Web technologies used to develop a prototype system that integrates scientific observations from four independent USGS and cooperator data systems. The techniques were tested with a use case goal of creating a data set for use in exploring potential relationships among freshwater fish populations and environmental factors. The resulting prototype extracts data from the BioData Retrieval System, the Multistate Aquatic Resource Information System, the National Geochemical Survey, and the National Hydrography Dataset. A prototype user interface allows a scientist to select observations from these data systems and combine them into a single data set in RDF format that includes explicitly defined relationships and data definitions. The project was funded by the USGS Community for Data Integration and undertaken by the Community for Data Integration Semantic Web Working Group in order to demonstrate use of Semantic Web technologies by scientists. This allows scientists to simultaneously explore data that are available in multiple, disparate systems beyond those they traditionally have used.
An integrated analytical approach has been used to determine the mode of occurrence of arsenic in samples of four widely used US coals: the Pittsburgh, Illinois #6, Elkhorn/Hazard, and Wyodak. Results from selective leaching, X-ray absorption fine structure (XAFS) spectroscopy, and electron microprobe analysis show that pyrite is the principal source of arsenic in the three bituminous coals, but the concentration of As in pyrite varies widely. The Wyodak sample contains very little pyrite; its arsenic appears to be primarily associated with organics, as As3+, or as arsenate. Significant (10-40%) fractions of arsenate, derived from pyrite oxidation, are also present in the three bituminous coal samples. This information is essential in developing predictive models for arsenic behavior during coal combustion and in other environmental settings.