SEARCH · USGS Science

Results for “Journal of Plant Research”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

SourceResearch connectionFrom yearThrough year

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 127 records · Page 7Linked to original sources

USGS2015

The continuing medical mystery of Balkan Endemic Nephropathy

Balkan Endemic Nephropathy (BEN) is a disease of subtle onset and insidious progression that typically occurs between the 4th and 6th decade in long‐resident individuals in highly specific geographic locations of the Balkan region and affects 1 – 5% of the population. Though it does not follow typical Mendelian genetics, there is a familial pattern of occurrence. Although residents may live only a few kilometers apart, certain locations are highly affected while others close by, even as close as across the road, remain unscathed. Because of this geographic selectivity scientists have searched for an environmental cause. It is thought that exposure to the toxic plant Aristolochia clematitis is to blame. Genotoxic N‐heterocyclic or polycyclic aromatic containing coal water leachates entering cultivated soil and drinking water are also a possible cause due to the proximity and predictive power of endemic foci to coal deposits. Evidence for Ochratoxin A fungal poisoning also exists. High levels of phthalates have been measured in BEN‐endemic drinking water. BEN is a probably a multifactorial disease that may result from exposure through some of above‐mentioned environmental sources, with genetic factors contributing. This review will discuss recent research concerning the etiology, potential therapies for the treatment of nephropathy, and unexplored research directions for this chronic kidney disease.

Journal of Rare Diseases↗

USGS2013

Monitoring restoration impacts to endemic plant communities in soil inclusions of arid environments

Soil inclusions are small patches of soil with different properties than the surrounding, dominant soil. In arid areas of western North America, soil inclusions called slickspot soils are saltier than adjacent soil and support different types of native vegetation. Traditional sagebrush restoration efforts, such as using drills to plant seeds or herbicides to control invasive vegetation, may damage sensitive slickspot soil and supporting vegetation. USGS scientists David Pyke and Scott Shaff and collaborators monitored slickspot size and cover of endangered slickspot peppergrass for two years to see if they were affected by the application of the herbicide glyphosate or by a minimum-till drill in the Snake River Plain, ID. The researchers examined the use of aerial photographs versus on-the-ground measurements and concluded that slickspot sizes were not affected by these treatments. Remote sensing using aerial photographs proved a useful method for mapping slickspot soils.

International Journal of Agriculture & Biology↗

USGS2012

A shell-neutral modeling approach yields sustainable oyster harvest estimates: a retrospective analysis of the Louisiana state primary seed grounds

A numerical model is presented that defines a sustainability criterion as no net loss of shell, and calculates a sustainable harvest of seed (<75 mm) and sack or market oysters (≥75 mm). Stock assessments of the Primary State Seed Grounds conducted east of the Mississippi from 2009 to 2011 show a general trend toward decreasing abundance of sack and seed oysters. Retrospective simulations provide estimates of annual sustainable harvests. Comparisons of simulated sustainable harvests with actual harvests show a trend toward unsustainable harvests toward the end of the time series. Stock assessments combined with shell-neutral models can be used to estimate sustainable harvest and manage cultch through shell planting when actual harvest exceeds sustainable harvest. For exclusive restoration efforts (no fishing allowed), the model provides a metric for restoration success-namely, shell accretion. Oyster fisheries that remove shell versus reef restorations that promote shell accretion, although divergent in their goals, are convergent in their management; both require vigilant attention to shell budgets.

Journal of Shellfish Research↗

USGS2022

Restoration for resilience: The role of plant-microbial interactions and seed provenance in ecological restoration

With global efforts to restore grassland ecosystems, researchers and land management practitioners are working to reconstruct habitat that will persist and withstand stresses associated with climate change. Part of these efforts involve movement of plant material potentially adapted to future climate conditions from native habitat or seed production locations to a new restoration site. Restoration practice often follows this plant-centered, top-down approach. However, we suggest that restoration of belowground interactions, namely between plants and arbuscular mycorrhizal fungi or rhizobia, is important for restoring resilient grasslands. In this synthesis we highlight these interactions and offer insight into how their restoration might be included in current grassland restoration practice. Ultimately, restoration of belowground interactions may contribute to grassland habitat that can withstand and respond to future climate uncertainties.

Natural Areas Journal↗

USGS2009

Stimulating a Great Lakes coastal wetland seed bank using portable cofferdams: implications for habitat rehabilitation

Coastal wetland seed banks exposed by low lake levels or through management actions fuel the reestablishment of emergent plant assemblages (i.e., wetland habitat) critical to Great Lakes aquatic biota. This project explored the effectiveness of using portable, water-filled cofferdams as a management tool to promote the natural growth of emergent vegetation from the seed bank in a Lake Erie coastal wetland. A series of dams stretching approximately 450??m was installed temporarily to isolate hydrologically a 10-ha corner of the Crane Creek wetland complex from Lake Erie. The test area was dewatered in 2004 to mimic a low-water year, and vegetation sampling characterized the wetland seed bank response at low, middle, and high elevations in areas open to and protected from bird and mammal herbivory. The nearly two-month drawdown stimulated a rapid seed-bank-driven response by 45 plant taxa. Herbivory had little effect on plant species richness, regardless of the location along an elevation gradient. Inundation contributed to the replacement of immature emergent plant species with submersed aquatic species after the dams failed and were removed prematurely. This study revealed a number of important issues that must be considered for effective long-term implementation of portable cofferdam technology to stimulate wetland seed banks, including duration of dewatering, product size, source of clean water, replacement of damaged dams, and regular maintenance. This technology is a potentially important tool in the arsenal used by resource managers seeking to rehabilitate the functions and values of Great Lakes coastal wetland habitats.

Journal of Great Lakes Research↗

USGS2010

Carbon, water, and energy fluxes in a semiarid cold desert grassland during and following multiyear drought

The net exchanges of carbon dioxide, water vapor, and energy were examined in a perennial Colorado Plateau grassland for 5 years. The study began within a multiyear drought and continued as the drought ended. The grassland is located near the northern boundary of the influence of the North American monsoon, a major climatic feature bringing summer rain. Following rain, evapotranspiration peaked above 8 mm d -1 but was usually much smaller (2-4 mm d -1 ). Net productivity of the grassland was low compared to other ecosystems, with peak hourly net CO 2 uptake in the spring of 4 (mu or u)mol m -2 s -1 and springtime carbon gain in the range of 42 + or - 11 g C m -2 (based on fluxes) to 72 + or - 55 g C m -2 (based on carbon stocks; annual carbon gain was not quantified). Drought decreased gross ecosystem productivity (GEP) and total ecosystem respiration, with a much larger GEP decrease. Monsoon rains led to respiratory pulses, lasting a few days at most, and only rarely resulted in net CO 2 gain, despite the fact that C 4 grasses dominated plant cover. Minor CO 2 uptake was observed in fall following rain. Spring CO 2 uptake was regulated by deep soil moisture, which depended on precipitation in the prior fall and winter. The lack of CO 2 uptake during the monsoon and the dependence of GEP on deep soil moisture are in contrast with arid grasslands of the warm deserts. Cold desert grasslands are most likely to be impacted by future changes in winter and not summer precipitation.

Colorado Plateau↗

USGS2020

Soil respiration response to rainfall modulated by plant phenology in a montane meadow, East River, Colorado, USA

Soil respiration is a primary component of the terrestrial carbon cycle. However, predicting the response of soil respiration to climate change remains a challenge due to the complex interactions between environmental drivers, especially plant phenology, temperature, and soil moisture. In this study, we use a 1‐D diffusion‐reaction model to calculate depth‐resolved CO 2 production rates from soil CO 2 concentrations and surface efflux observations in a subalpine meadow in the East River watershed, CO. Modeled rates are compared to in situ soil temperature and moisture conditions and MODIS satellite enhanced vegetation index (EVI) representing plant phenology across three hydrologically distinct growing seasons from 2016–2018. While soil respiration correlated with temperature on diel timescales ( p < 0.05), seasonal variability was dominated by soil moisture and plant phenology ( p < 0.05). We observed significant respiration increases in response to precipitation events; however, magnitude and duration were significantly higher in 2017 than 2016 despite similar wetting characteristics. Based on MODIS EVI, we suggest that the respiration response to rainfall is controlled by plant phenology, which in turn reflects the capacity of plants to respond to precipitation via increased photosynthesis and autotrophic respiration, behavior that is not captured in typical soil respiration pulse models. Projected changes in montane climate such as earlier snowmelt and prolonged fore‐summer drought may decrease soil respiration fluxes by decreasing the overlap between peak productivity and the summer monsoon. Finally, we observed significant late season CO 2 fluxes from the deep subsoil (>165 cm) that support growing evidence for the importance of subsoil processes in driving integrated respiration fluxes.

Colorado↗

USGS2016

Effects of permafrost aggradation on peat properties as determined from a pan-Arctic synthesis of plant macrofossils

Permafrost dynamics play an important role in high-latitude peatland carbon balance and are key to understanding the future response of soil carbon stocks. Permafrost aggradation can control the magnitude of the carbon feedback in peatlands through effects on peat properties. We compiled peatland plant macrofossil records for the northern permafrost zone (515 cores from 280 sites) and classified samples by vegetation type and environmental class (fen, bog, tundra and boreal permafrost, and thawed permafrost). We examined differences in peat properties (bulk density, carbon (C), nitrogen (N) and organic matter content, and C/N ratio) and C accumulation rates among vegetation types and environmental classes. Consequences of permafrost aggradation differed between boreal and tundra biomes, including differences in vegetation composition, C/N ratios, and N content. The vegetation composition of tundra permafrost peatlands was similar to permafrost-free fens, while boreal permafrost peatlands more closely resembled permafrost-free bogs. Nitrogen content in boreal permafrost and thawed permafrost peatlands was significantly lower than in permafrost-free bogs despite similar vegetation types (0.9% versus 1.5% N). Median long-term C accumulation rates were higher in fens (23 g C m −2   yr −1 ) than in permafrost-free bogs (18 g C m −2  yr −1 ) and were lowest in boreal permafrost peatlands (14 g C m −2  yr −1 ). The plant macrofossil record demonstrated transitions from fens to bogs to permafrost peatlands, bogs to fens, permafrost aggradation within fens, and permafrost thaw and reaggradation. Using data synthesis, we have identified predominant peatland successional pathways, changes in vegetation type, peat properties, and C accumulation rates associated with permafrost aggradation.

Journal of Geophysical Research: Biogeosciences↗

USGS2019

The Miocene Atastra Creek sinter (Bodie Hills volcanic field, California and Nevada): 4D evolution of a geomorphically intact siliceous hot spring deposit

The Atastra Creek siliceous hot spring deposit, or sinter, occurs in the Paramount-Bald Peak alteration zone, due north of the Bodie precious metals mining district in the Miocene Bodie Hills volcanic field, California and Nevada, U.S.A. Distinctive features include its geomorphically intact geyser vent mounds, the presence of growth-fault-stepped sinter terraces that developed westward along a NNW trending fault, and atypical Hg, Sb and As concentrations. High-temperature (>75 °C), subaerial, proximal apron sinter occurs in two settings – (1) radiating botryoidal geyserite in vent mounds and (2) bedded geyserite (columnar, nodular, size-sorted geyser eggs) intercalated with mid- to low-temperature (<60 °C), middle to distal apron terrace sinter. The active geyser vent mounds migrated from south to north across the apron terrace through time. A newly recognized, visually striking type of sinter – termed silica infiltrate herein – formed directly beneath the subaerial geyserite deposits. It is characterized by mainly parallel, thin, irregular beds of white silica with narrow borders of dark blue-gray silica, as well as swirly to globular white silica, all chaotically linked together by silica ‘necks’ and ‘bridges’. The silica infiltrate permeates the pre-existing sinter, and is interpreted to represent super-heated fluid injections into the immediately overlying geyser vent mounds and pools. The adjacent sinter sheets preserve fluid-flow directions of warm-water channels that traversed the discharge apron, including microbial streamer fabric and wavy laminated sinter with flattened bubbles. More distal sinter textures are recorded by rimmed terracettes with mammillated and palisade microbial fabrics and rare, warm pool-related stromatolites. However, plants are absent, probably due to the high metalloids, in particular As. Post-depositional events include an inferred hydrothermal eruption breccia and an interpreted drop in the water table accompanied by incursion of steam acid condensate, as evidenced by pervasive hydrothermal alteration of the Atastra Creek deposits. Hence, the well-exposed sedimentary facies distributions, well-preserved geomorphology, and stratigraphic and structural relationships together allow an unusually complete, paleoenvironmental reconstruction of the Atastra Creek paleohydrothermal deposit.

Journal of Volcanology and Geothermal Research↗

USGS2008

Hepatic minerals of white-tailed and mule deer in the southern Black Hills, South Dakota

Because there is a paucity of information on the mineral requirements of free-ranging deer, data are needed from clinically healthy deer to provide a basis for the diagnosis of mineral deficiencies. To our knowledge, no reports are available on baseline hepatic mineral concentrations from sympatric white-tailed deer (Odocoileus virginianus) and mule deer (Odocoileus hemionus) using different habitats in the Northern Great Plains. We assessed variation in hepatic minerals of female white-tailed deer (n=42) and mule deer (n=41). Deer were collected in February and August 2002 and 2003 from study areas in Custer and Pennington Counties, South Dakota, in and adjacent to a wildfire burn. Hepatic samples were tested for levels (parts per million; ppm) of aluminum (Al), antimony (Sb), arsenic (As), barium (Ba), boron (B), cadmium (Cd), calcium (Ca), chromium (Cr), cobalt (Co), copper (Cu), iron (Fe), lead (Pb), magnesium (Mg), manganese (Mn), mercury (Hg), molybdenum (Mo), nickel (Ni), phosphorus (P), potassium (K), selenium (Se), sodium (Na), sulfur (S), thalium (T1), and zinc (Zn). We predicted that variability in element concentrations would occur between burned and unburned habitat due to changes in plant communities and thereby forage availability. We determined that Zn, Cu, and Ba values differed (P???0.05) between habitats. Because of the nutritional demands of gestation and lactation, we hypothesized that elemental concentrations would vary depending on reproductive status; Cd, Cu, Ca, P, Mn, Mo, Na, and Zn values differed (P???0.05) by reproductive status. We also hypothesized that, due to variation in feeding strategies and morphology between deer species, hepatic elemental concentrations would reflect dietary differences; Ca, Cu, K, Co, Mo, Se, and Zn differed (P???0.05) between species. Further research is needed to determine causes of variation in hepatic mineral levels due to habitat, reproductive status, and species. ?? Wildlife Disease Association 2008.

Journal of Wildlife Diseases↗

USGS2017

Dissolved organic matter compositional change and biolability during two storm runoff events in a small sgricultural watershed

Agricultural watersheds are globally pervasive, supporting fundamentally different organic matter source, composition, and concentration profiles in comparison to natural systems. Similar to natural systems, agricultural storm runoff exports large amounts of organic carbon from agricultural land into waterways. But intense management of upper soil layers, waterway channelization, wetland and riparian habitat removal, and postharvest vegetation removal promise to uniquely drive organic matter release to waterways. During a winter first flush and a subsequent storm event, this study investigated the influence of a small agricultural watershed on dissolved organic matter (DOM) source, composition, and biolability. Storm water discharge released strongly terrestrial yet biolabile (23 to 32%) dissolved organic carbon (DOC). Following a 21 day bioassay, a parallel factor analysis identified an 80% reduction in a protein-like (phenylpropyl) component (C2) that was previously correlated to lignin phenol concentration, and a 10% reduction in a humic-like, terrestrially sourced component (C4). Storm-driven releases tripled DOC concentration (from 2.8 to 8.7 mg L −1 ) during the first flush event in comparison to base flow and were terrestrially sourced, with an eightfold increase in vascular plant derived lignin phenols (23.0 to 185 μg L −1 ). As inferred from system hydrology, lignin composition, and nitrate as a groundwater tracer, an initial pulse of dilute water from the upstream watershed caused a counterclockwise DOC hysteresis loop. DOC concentrations peaked after 3.5 days, with the delay between peak discharge and peak DOC attributed to storm water hydrology and a period of initial water repellency of agricultural soils, which delayed DOM leaching.

California↗

USGS1973

A study of the distribution of the polychlorinated biphenyls in the aquatic environment

Data gathered from monitoring activities and project studies indicate the ubiquitous occurrence and distribution of polychlorinated biphenyls in the aquatic environment. Residues have been detected in samples from 19 States, representing nearly every region of the country. Concentrations ranged from 0.1 to 4.0 ug/l in unfiltered water samples and 5.0 to 3,200 ug/kg in bottom sediments. PCB residues were also found in fish and aquatic plants. Samples were prepared by the same techniques used for general chlorinated insecticide detection, with special attention to cleanup and separation of PCB's from other compounds. Basic identification and quantification were made by dual-column electron-capture gas chromatography and confirmed by gas chromatography mass spectrometry whenever possible. The sampling program is expected to be broadened geographically in 1973 and increased in successive years in order to more adequately define the distribution of PCB residues in the major drainage basins of the United States.

Journal of Research of the U.S. Geological Survey↗

USGS2004

Waterbirds foods in winter-managed ricefields in Mississippi

Ricefields are important foraging habitats for waterfowl and other waterbirds in primary North American wintering regions. We conducted a large-scale experiment to test effects of post-harvest ricefield treatment, winter water management, and temporal factors on availabilities of rice, moist-soil plant seeds, aquatic invertebrates, and green forage in the Mississippi Alluvial Valley (MAV), Mississippi, USA, fall-winter 1995-1997. Our results revealed that a large decrease in rice grain occurred between harvest and early winter (79-99%), which, if generally true throughout the MAV, would have critical implications on foraging carrying capacity of ricefields for migrating and wintering waterbirds. During the remainder of winter, food resources generally were similar among treatment combinations. An exception was biomass of aquatic invertebrates, which demonstrated potential to increase by late winter in ricefields that remained flooded. We offer revised calculations of foraging carrying capacity for waterfowl in MAV ricefields and recommend continuing research and management designed to increase availability of residual rice and aquatic invertebrates in winter.

Mississippi↗

USGS2013

Accumulation of atmospheric sulfur in some Costa Rican soils

Sulfur is one of the macronutrient elements whose sources to terrestrial ecosystems should shift from dominance by rock-weathering to atmospheric deposition as soils and underlying substrate undergo progressive weathering and leaching. However, the nature and timing of this transition is not well known. We investigated sources of sulfur to tropical rain forests growing on basalt-derived soils in the Osa Peninsula region of Costa Rica. Sulfur sources were examined using stable isotope ratios (δ 34 S) and compared to chemical indices of soil development. The most weathered soils, and the forests they supported, are dominated by atmospheric sulfur, while a less weathered soil type contains both rock-derived and atmospheric sulfur. Patterns of increasing δ 34 S with increasing soil sulfur concentration across the landscape suggest atmospheric sulfur is accumulating, and little rock-derived sulfur has been retained. Soil sulfur, minus adsorbed sulfate, is correlated with carbon and nitrogen, implying that sulfur accumulation occurs as plants and microbes incorporate sulfur into organic matter. Only the lower depth increments of the more weathered soils contained significant adsorbed sulfate. The evidence suggests a pattern of soil development in which sulfur-bearing minerals in rock, such as sulfides, weather early relative to other minerals, and the released sulfate is leached away. Sulfur added via atmospheric deposition is retained as organic matter accumulates in the soil profile. Adsorbed sulfate accumulates later, driven by changes in soil chemistry and mineralogy. These aspects of sulfur behavior during pedogenesis in this environment may hasten the transition to dominance by atmospheric sources.

Journal of Geophysical Research: Biogeosciences↗

USGS1993

Diatom zonation in southern Oregon tidal marshes relative to vascular plants, foraminifera, and sea level

Diatom assemblages across estuarine marshes show a three-part vertical ecologic zonation of the intertidal zone similar to zonations of foraminiferal and vascular plant assemblages. Gradual changes in the compositions of all three types of assemblages reflect gradational zone boundaries, 5-40m wide. Modern mudflat, low marsh, and high marsh zones can be distinguished from one another with diatom assemblage data at three silty marshes in the middle parts of two river-dominated estuaries. The compositions of vascular plant and diatom assemblages on a transect at a sandy site near the mouth of a third estuary differ from those of the silty transects. A particularly distinct diatom subzone (the marsh border subzone) is marked by a dominance of fresh-to-brackish-water diatoms in a few samples from the upper part of the high marsh and lowest part of the upland zone on all four transects, but the vertical range of the marsh border subzone is large (c0.7m) and its range may vary from site to site depending on the amount of freshwater seepage and runoff into marshes. -from Authors

Journal of Coastal Research↗

USGS2003

Habitat use by Swainson's Hawks on their austral winter grounds in Argentina

We examined the use of agricultural habitats by Swainson's Hawks (Buteo swainsoni)in La Pampa and Santa Fe provinces, Argentina. We found an association of foraging Swainson's Hawks with permanent pastures such as fallow, natural, and alfalfa fields. The hawks also used plowed fields for sunning, resting, and preening. Fields planted with annual crops and pastures were used very little, except when they were cut for hay, plowed, and harvested, or when low crop height and cover allowed the hawks to land in fields. The availability of abundant, yet widely-spaced and transient food-sources, such as insect outbreaks, appeared to be the principal factor influencing habitat use by the hawks. Their reliance on agricultural habitats makes Swainson's Hawks highly vulnerable to pesticide contamination and has contributed to the occurrence of significant mortality events on their wintering grounds.

Journal of Raptor Research↗

USGS1978

Relationship between hydrology and bottomland vegetation in the Ozark Mountains of Missouri

The identification of plants and plant assemblages that are common to stream reaches that gain water and those that do not is an important key in the study of limestone hydrology. In the Ozark Mountains of Missouri, a rapid change from a stream-channel growth of abundant willows ( Salix spp.), touch-me-nots ( Impatiens capensis ), and sedges such as Carex Frankii and Eleocharis spp. to an abundant growth of bluestars ( Amsonia illustris ) indicates a rapid increase in depth to water. Vegetative indicators of hydrologic conditions are most helpful when used in conjunction with other information, but they are independently useful in pinpointing areas of abrupt hydrologic changes.

Missouri↗

USGS2003

Research observation: Hydrolyzable and condensed tannins in plants of northwest Spain forests

Tannins are secondary metabolites that may influence feeding by mammals on plants . We analyzed hydrolyzable and condensed tannins in 30 plant species consumed by livestock and deer, as a preliminary attempt to study their possible implications on browsing and grazing in forest ecosystems. Heathers ( Ericaceae ) and plants of the Rose ( Rosaceae ) family had tannins , while forbs, grasses and shrubs other than the heathers did not show astringency properties. We found the highest tannin content of all the species in Rubus sp., with the highest value around 180 mg TAE/g dry weight in spring. Potentilla erecta , Alnus glutinosa and Quercus robur were next with 57 to 44 mg TAE/g dw. Total tannins in heathers ranged from 22 to 36 mg TAE/g dw. Levels of condensed tannins were higher than hydrolyzable for most of the species. Only Betula alba , Calluna vulgaris , Pteridium aquilinum and Vaccinium myrtillus had 100% hydrolyzable tannins . Tannin content of the species changed seasonally with highest values during the growing season, corresponding to late winter or early spring, depending on the species.

northwest Spain↗