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USGS2015

A rapid estimation of near field tsunami run-up

Many efforts have been made to quickly estimate the maximum run-up height of tsunamis associated with large earthquakes. This is a difficult task, because of the time it takes to construct a tsunami model using real time data from the source. It is possible to construct a database of potential seismic sources and their corresponding tsunami a priori.However, such models are generally based on uniform slip distributions and thus oversimplify the knowledge of the earthquake source. Here, we show how to predict tsunami run-up from any seismic source model using an analytic solution, that was specifically designed for subduction zones with a well defined geometry, i.e., Chile, Japan, Nicaragua, Alaska. The main idea of this work is to provide a tool for emergency response, trading off accuracy for speed. The solutions we present for large earthquakes appear promising. Here, run-up models are computed for: The 1992 Mw 7.7 Nicaragua Earthquake, the 2001 Mw 8.4 Perú Earthquake, the 2003Mw 8.3 Hokkaido Earthquake, the 2007 Mw 8.1 Perú Earthquake, the 2010 Mw 8.8 Maule Earthquake, the 2011 Mw 9.0 Tohoku Earthquake and the recent 2014 Mw 8.2 Iquique Earthquake. The maximum run-up estimations are consistent with measurements made inland after each event, with a peak of 9 m for Nicaragua, 8 m for Perú (2001), 32 m for Maule, 41 m for Tohoku, and 4.1 m for Iquique. Considering recent advances made in the analysis of real time GPS data and the ability to rapidly resolve the finiteness of a large earthquake close to existing GPS networks, it will be possible in the near future to perform these calculations within the first minutes after the occurrence of similar events. Thus, such calculations will provide faster run-up information than is available from existing uniform-slip seismic source databases or past events of pre-modeled seismic sources.

Journal of Geophysical Research↗

USGS2025

Ultraviolet and visible remote sensing of volcanic gases

As magma rises in volcanic systems, volatile species exsolve from the silicate melt and are emitted as gases into the atmosphere. Measuring the magnitude and composition of gas emissions from volcanoes provides insights into processes occurring deep within the Earth and helps constrain the impact of volcanic degassing on atmospheric chemistry. Optical remote sensing techniques allow volcanic gas emissions to be characterized without the need to access hazardous areas near active volcanic vents. This paper reviews the state of the art in ultraviolet and visible volcanic gas remote sensing from the ground, air, and space. Special attention is given to discussing the physics of atmospheric radiative transfer on which these techniques are based. The functionality and limitations of different remote sensing instruments are examined, making clear that the ideal choice of instrumentation will depend on the volcanic system to which it is applied and the sought measurement parameters. Common algorithms for determining trace gas column densities, gas burdens, and volcanic emission rates from measurements of spectral radiance are outlined and compared, showing how some algorithms attempt to model the physics of the measurement while others maximize sensitivity. Several examples demonstrate how remote sensing measurements continue to advance our understanding of volcanic systems and their impact on the atmosphere. Finally, a few promising directions of inquiry are suggested that could lead to improvements in remote sensing instrumentation and analysis techniques. By combining spectroscopic and imaging techniques, improving our understanding of atmospheric radiative transfer, expanding the suite of target gases, and increasing the coverage and frequency of observations, we stand to significantly improve our ability to detect and quantify volcanic gas emissions and gain new insights into important Earth-system processes.

Journal of Volcanology and Geothermal Research↗

USGS2013

Selection of hyperspectral narrowbands (HNBs) and composition of hyperspectral twoband vegetation indices (HVIs) for biophysical characterization and discrimination of crop types using field reflectance and Hyperion/EO-1 data

The overarching goal of this study was to establish optimal hyperspectral vegetation indices (HVIs) and hyperspectral narrowbands (HNBs) that best characterize, classify, model, and map the world's main agricultural crops. The primary objectives were: (1) crop biophysical modeling through HNBs and HVIs, (2) accuracy assessment of crop type discrimination using Wilks' Lambda through a discriminant model, and (3) meta-analysis to select optimal HNBs and HVIs for applications related to agriculture. The study was conducted using two Earth Observing One (EO-1) Hyperion scenes and other surface hyperspectral data for the eight leading worldwide crops (wheat, corn, rice, barley, soybeans, pulses, cotton, and alfalfa) that occupy ~70% of all cropland areas globally. This study integrated data collected from multiple study areas in various agroecosystems of Africa, the Middle East, Central Asia, and India. Data were collected for the eight crop types in six distinct growth stages. These included (a) field spectroradiometer measurements (350-2500 nm) sampled at 1-nm discrete bandwidths, and (b) field biophysical variables (e.g., biomass, leaf area index) acquired to correspond with spectroradiometer measurements. The eight crops were described and classified using ~20 HNBs. The accuracy of classifying these 8 crops using HNBs was around 95%, which was ~ 25% better than the multi-spectral results possible from Landsat-7's Enhanced Thematic Mapper+ or EO-1's Advanced Land Imager. Further, based on this research and meta-analysis involving over 100 papers, the study established 33 optimal HNBs and an equal number of specific two-band normalized difference HVIs to best model and study specific biophysical and biochemical quantities of major agricultural crops of the world. Redundant bands identified in this study will help overcome the Hughes Phenomenon (or “the curse of high dimensionality”) in hyperspectral data for a particular application (e.g., biophysi- al characterization of crops). The findings of this study will make a significant contribution to future hyperspectral missions such as NASA's HyspIRI.

Africa;Central Asia;Middle East↗

USGS2015

Nest predation research: Recent findings and future perspectives

Nest predation is a key source of selection for birds that has attracted increasing attention from ornithologists. The inclusion of new concepts applicable to nest predation that stem from social information, eavesdropping or physiology has expanded our knowledge considerably. Recent methodological advancements now allow focus on all three players within nest predation interactions: adults, offspring and predators. Indeed, the study of nest predation now forms a vital part of avian research in several fields, including animal behaviour, population ecology, evolution and conservation biology. However, within nest predation research there are important aspects that require further development, such as the comparison between ecological and evolutionary antipredator responses, and the role of anthropogenic change. We hope this review of recent findings and the presentation of new research avenues will encourage researchers to study this important and interesting selective pressure, and ultimately will help us to better understand the biology of birds.

Journal of Ornithology↗

USGS2006

Tectonic stressing in California modeled from GPS observations

What happens in the crust as a result of geodetically observed secular motions? In this paper we find out by distorting a finite element model of California using GPS-derived displacements. A complex model was constructed using spatially varying crustal thickness, geothermal gradient, topography, and creeping faults. GPS velocity observations were interpolated and extrapolated across the model and boundary condition areas, and the model was loaded according to 5-year displacements. Results map highest differential stressing rates in a 200-km-wide band along the Pacific-North American plate boundary, coinciding with regions of greatest seismic energy release. Away from the plate boundary, GPS-derived crustal strain reduces modeled differential stress in some places, suggesting that some crustal motions are related to topographic collapse. Calculated stressing rates can be resolved onto fault planes: useful for addressing fault interactions and necessary for calculating earthquake advances or delays. As an example, I examine seismic quiescence on the Garlock fault despite a calculated minimum 0.1-0.4 MPa static stress increase from the 1857 M???7.8 Fort Tejon earthquake. Results from finite element modeling show very low to negative secular Coulomb stress growth on the Garlock fault, suggesting that the stress state may have been too low for large earthquake triggering. Thus the Garlock fault may only be stressed by San Andreas fault slip, a loading pattern that could explain its erratic rupture history.

Journal of Geophysical Research B: Solid Earth↗

USGS2016

sbtools: A package connecting R to cloud-based data for collaborative online research

The adoption of high-quality tools for collaboration and reproducible research such as R and Github is becoming more common in many research fields. While Github and other version management systems are excellent resources, they were originally designed to handle code and scale poorly to large text-based or binary datasets. A number of scientific data repositories are coming online and are often focused on dataset archival and publication. To handle collaborative workflows using large scientific datasets, there is increasing need to connect cloud-based online data storage to R. In this article, we describe how the new R package sbtools enables direct access to the advanced online data functionality provided by ScienceBase, the U.S. Geological Survey’s online scientific data storage platform.

The R Journal↗

USGS2019

Age of the dacite of Sunset Amphitheater, a voluminous Pleistocene tephra from Mount Rainier (USA), and implications for Cascade glacial stratigraphy

The dacite of Sunset Amphitheater, Mount Rainier (USA), illustrates the difficulties in establishing accurate ages of Pleistocene tephra eruptions. Nearly uniform whole-rock, glass, and mineral compositions, texture, and phenocryst assemblage establish that certain conspicuous dissected pumice exposures scattered from Mount Rainier to southern Puget Sound are products of the same Pleistocene Plinian eruption . Deposit thicknesses and pumice sizes support an eruption on the order of low Volcanic Explosivity Index (VEI) 5, atypically explosive for dominantly lava-producing Mount Rainier. Statistically permissible 40 Ar/ 39 Ar plateau ages of plagioclase phenocryst separates are 138 ± 20 ka and 101 ± 11 ka (2σ). A previously published result of 206 ± 11 ka is herein shown to result from a sample selection error. Zircon from the pumice yields a U-Th crystallization age of 147 ± 8 ka if the isochron is required to pass through the tephra U-Th isotopic composition . In contrast, pooled (U-Th)/He measurements on the zircon yield an age of 85 ± 6 ka (2σ), which accords with well-behaved 40 Ar/ 39 Ar ages of stratigraphically associated lavas high on Mount Rainier, and is the best estimate of the pumice's true eruption age. Inclusions of undegassed melt (glass) in the plagioclase separates are proposed as biasing apparent 40 Ar/ 39 Ar plateau ages to old values through coupling of undegassed magmatic excess Ar with radiogenic Ar that accumulated post-eruptively from relatively K-rich glass. U-Th ages record zircon growth prior to eruption, consistent with a possible complex history of advanced solidification followed by remobilization . The ca. 85 ka eruption age confirms that bracketing glacial tills on the flanks of Mount Rainier were products of the Penultimate Glaciation (MIS 6) and Last Glacial Maximum (MIS 2). This eruption age also provides an important time marker for glacial and other sedimentary deposits in southern Puget Sound lowland that, excepting the Vashon Drift (MIS 2), generally lack reliable age determinations.

Washington↗

USGS2018

Soil science and geology: Connects, disconnects and new opportunities in geoscience education

Despite historical linkages, the fields of geology and soil science have developed along largely divergent paths in the United States during much of the mid- to late- twentieth century. The shift in recent decades within both disciplines to greater emphasis on environmental quality issues and a systems approach has created new opportunities for collaboration and cross-training. Because of the importance of the soil as a dynamic interface between the hydrosphere, biosphere, atmosphere, and lithosphere, introductory and advanced soil science classes are now being taught in a number of earth and environmental science departments. The National Research Council's recent report, Basic Research Opportunities in Earth Science, highlights the soil zone as part of the land surface-to-groundwater "critical zone" requiring additional investigation. To better prepare geology undergraduates to deal with complex environmental problems, their training should include a fundamental understanding of the nature and properties of soils. Those undergraduate geology students with an interest in this area should be encouraged to view soil science as a viable earth science specialty area for graduate study. Summer internships such as those offered by the National Science Foundation-funded Integrative Graduate Education, Research, and Training (IGERT) programs offer geology undergraduates the opportunity to explore research and career opportunities in soil science.

Journal of Geoscience Education↗

USGS1994

The 1989-1990 eruptions of Redoubt Volcano: an introduction

Redoubt Volcano, located on the west side of Cook Inlet in south-central Alaska, erupted explosively on over 20 separate occasions between December 14, 1989 and April 21, 1990. Fourteen lava domes were emplaced in the summit area, thirteen of which were subsequently destroyed. The eruption caused economic losses estimated at over $160,000,000 making this the second most costly eruption in U.S. history. This economic impact provided the impetus for a integrated comprehensive account of an erupting volcano using both modern and classical research and modern techniques which in turn led to advances in eruption monitoring and interpretation. Research on such topics as dome formation and collapse and the resulting pyroclastic flows, elutriated ash, lightning, tephra, and flooding was blended with the rapid communication of associated hazards to a large user group. The seismology successes in predicting and monitoring eruption dynamics were due in part to (1) the recognition of long-period seismic events as indicators of the readiness of the volcano to erupt, and (2) to the development of new tools that allowed the seismicity to be assessed instantaneously. Integrated studies of the petrology of erupted products and volatile content over time gave clues as to the progress of the eruption towards completion.

Alaska↗

USGS2005

The calcite → aragonite transformation in low-Mg marble: Equilibrium relations, transformations mechanisms, and rates

Experimental transformation of a rather pure natural calcite marble to aragonite marble did not proceed via the expected straightforward polymorphic replacement. Instead, the small amount of Mg in the starting material (0.36 wt %) was excluded from the growing aragonite and diffused preferentially into the remaining calcite grains, producing Mg-rich calcite rods that persisted as relicts. Nucleation of aragonite occurred exclusively on grain boundaries, with aragonite [001] oriented subparallel to calcite [0001]. The aragonite crystals preferentially consumed the calcite crystal on which they nucleated, and the reaction fronts developed preferentially along the {010} and {110} planes of aragonite. Each aragonite neoblast that grew was nearly free of Mg (typically <0.1 wt %). The excess Mg was taken up by the calcite grains in between, stabilizing them and causing a few volume percent rodlike relicts of Mg-enriched calcite (up to 10 wt % MgO) to be left behind by the advancing reaction front. The aragonite growth rates are approximately linear and range from &sim;3 × 10 −11 m s −1 at 600°C to &sim;9 × 10 −9 m s −1 at 850°C, with an apparent activation enthalpy of 166 ± 91 kJ mol −1 . This reaction mechanism and the resultant texture are akin to cellular precipitation reactions in metals. Similar transformation textures have been reported from high-Mg marbles in Japan and China that disproportionated to low-Mg calcite and dolomite.

Journal of Geophysical Research B: Solid Earth↗

USGS2009

A case of timely satellite image acquisitions in support of coastal emergency environmental response management

The synergistic application of optical and radar satellite imagery improves emergency response and advance coastal monitoring from the realm of “opportunistic” to that of “strategic.” As illustrated by the Hurricane Ike example, synthetic aperture radar imaging capabilities are clearly applicable for emergency response operations, but they are also relevant to emergency environmental management. Integrated with optical monitoring, the nearly real-time availability of synthetic aperture radar provides superior consistency in status and trends monitoring and enhanced information concerning causal forces of change that are critical to coastal resource sustainability, including flooding extent, depth, and frequency.

Journal of Coastal Research↗

USGS1997

Contrasts within an outlier-reef system: Evidence for differential quaternary evolution, south Florida windward margin, U.S.A.

Closely spaced, high-resolution, seismic-reflection profiles acquired off the upper Florida Keys (i.e., north) reveal a platform-margin reef-and-trough system grossly similar to, yet quite different from, that previously described off the lower Keys (i.e., south). Profiles and maps generated for both areas show that development was controlled by antecedent Pleistocene topography (presence or absence of an upper-slope bedrock terrace), sediment availability, fluctuating sea level, and coral growth rate and distribution. The north terrace is sediment-covered and exhibits linear, buried, low-relief, seismic features of unknown character and origin. The south terrace is essentially sediment-free and supports multiple, massive, high-relief outlier reefs. Uranium disequilibrium series dates on outlier-reef corals indicate a Pleistocene age (~83-84 ka). A massive Pleistocene reef with both aggradational (north) and progradational (south) aspects forms the modern margin escarpment landward of the terrace. Depending upon interpretation (the north margin-escarpment reef may or may not be an outlier reef), the north margin is either more advanced or less advanced than the south margin. During Holocene sea-level rise, Pleistocene bedrock was inundated earlier and faster first to the north (deeper offbank terrace), then to the south (deeper platform surface). Holocene overgrowth is thick (8 m) on the north outer-bank reefs but thin (0.3 m) on the south outlier reefs. Differential evolution resulted from interplay between fluctuating sea level and energy regime established by prevailing east-southeasterly winds and waves along an arcuate (ENE-WSW) platform margin.

Journal of Coastal Research↗

USGS2016

Application of genetics and genomics to wildlife epidemiology

Wildlife diseases can have significant impacts on wildlife conservation and management. Many of the pathogens that affect wildlife also have important implications for domestic animal and human health. However, management interventions to prevent or control wildlife disease are hampered by uncertainties about the complex interactions between pathogens and free-ranging wildlife. We often lack crucial knowledge about host ecology, pathogen characteristics, and host–pathogen dynamics. The purpose of this review is to familiarize wildlife biologists and managers with the application of genetic and genomic methodologies for investigating pathogen and host biology to better understand and manage wildlife diseases. The genesis of this review was a symposium at the 2013 annual Wildlife Society Conference. We reviewed the scientific literature and used our personal experiences to identify studies that illustrate the application of genetic and genomic methods to advance our understanding of wildlife epidemiology, focusing on recent research, new techniques, and innovative approaches. Using examples from a variety of pathogen types and a broad array of vertebrate taxa, we describe how genetics and genomics can provide tools to detect and characterize pathogens, uncover routes of disease transmission and spread, shed light on the ways that disease susceptibility is influenced by both host and pathogen attributes, and elucidate the impacts of disease on wildlife populations. Genetic and increasingly genomic methodologies will continue to contribute important insights into pathogen and host biology that will aid efforts to assess and mitigate the impacts of wildlife diseases on global health and conservation of biodiversity.

Journal of Wildlife Management↗

USGS2021

Progress towards integrating an understanding of chemical ecology into sea lamprey control

The sea lamprey, Petromyzon marinus , is a destructive invader in the Laurentian Great Lakes that relies on several complex chemical cues to complete their life cycle. The central roles of chemical cues in sea lamprey reproduction provide opportunities to leverage knowledge of sea lamprey chemical ecology when developing alternative or supplemental strategies for sea lamprey control. A solid foundation has been laid regarding sea lamprey chemical ecology, with recent advances in our understanding of the migratory pheromone, male sex pheromone, and alarm cues broadening our fundamental understanding of the diversity, complexity, and evolution of chemical cues used by sea lamprey. Additionally, research applying semiochemicals in differing management scenarios has provided useful insights into the challenges of incorporating chemical cues into the sea lamprey control program. Here, we synthesize new findings related to fundamental research of chemosensory cues along with knowledge learned from management-based tests and explore options for integrating an understanding of chemical ecology into sea lamprey control in light of new knowledge. We also highlight current unknowns and future research needs that should be addressed prior to implementation of sea lamprey chemical ecology into the sea lamprey control program.

Great Lakes↗

USGS2011

Inference for occupancy and occupancy dynamics

This chapter deals with the estimation of occupancy as a state variable to assess the status of, and track changes in, species distributions when sampling with camera traps. Much of the recent interest in occupancy estimation and modeling originated from the models developed by MacKenzie et al. (2002, 2003), although similar methods were developed independently (Azuma et al. 1990; Bayley and Petersen 2001; Nichols and Karanth, 2002; Tyre et al. 2003), all of which deal with species occurrence information and imperfect detection. Less than a decade after these publications, the modeling and estimation of species occurrence and occupancy dynamics have increased significantly. Special features of scientific journals have explored innovative uses of detection–nondetection data with occupancy models (Vojta 2005), and an entire volume has synthesized the use and application of occupancy estimation methods (MacKenzie et al. 2006). Reviews of the topical concepts, philosophical considerations, and various sampling designs that can be used for occupancy estimation are now readily available for a range of audiences (MacKenzie and Royle 2005; MacKenzie et al. 2006; Bailey et al. 2007; Royle and Dorazio 2008; Conroy and Carroll 2009; Kendall and White 2009; Hines et al. 2010; Link and Barker 2010). As a result, it would be pointless here to recast all that these publications have so eloquently articulated, but that said, a review of any scientific topic requires sufficient context and relevant background information, especially when relatively new methodologies and techniques such as occupancy estimation and camera traps are involved. This is especially critical in a digital age where new information is published at warp speed, making it increasingly difficult to stay abreast of theoretical advances and research developments.

Book chapter↗

USGS2011

Catfish science: Status and trends in the 21st century

Catfish science, the study of the fish order Siluriformes, is a diverse and expanding field in terms of advances and breadth of topics. We compiled literature from primary fisheries journals as an index of interest and advances in catfish science to examine temporal trends in the field. The number of catfish scientific publications varied over the past century with strong peaks during 1975–1979 and 2005–2010, which may be the result of interactive scientific and societal influences. Catfish biology was the predominant publication topic until the late 1990s, when ecology, techniques, and management publications became more prevalent. Articles on catfish ecology were most numerous in both the first and second international catfish symposia, but publications on techniques and conservation were more numerous in the second catfish symposium than the first. We summarize the state of knowledge, recent advances, and areas for future attention among topics in catfish science, including sampling and aging techniques, population dynamics, ecology, fisheries management, species diversity, nonnative catfish, and human dimensions, with an emphasis on the gains in this second symposium. Areas that we expect to be pursued in the future are development of new techniques and validation of existing methods; expansion of research to less-studied catfish species; broadening temporal, spatial, and organizational scales; interdisciplinary approaches; and research on societal views and constituent demands. Meeting these challenges will require scientists to span beyond their professional comfort zones to effectively reach higher standards. We look forward to the coming decade and the many advances in the conservation, ecology, and management of catfish that will be shared.

Conference Paper↗

USGS2012

Mapping river bathymetry with a small footprint green LiDAR: Applications and challenges

Airborne bathymetric Light Detection And Ranging (LiDAR) systems designed for coastal and marine surveys are increasingly sought after for high-resolution mapping of fluvial systems. To evaluate the potential utility of bathymetric LiDAR for applications of this kind, we compared detailed surveys collected using wading and sonar techniques with measurements from the United States Geological Survey’s hybrid topographic⁄ bathymetric Experimental Advanced Airborne Research LiDAR (EAARL). These comparisons, based upon data collected from the Trinity and Klamath Rivers, California, and the Colorado River, Colorado, demonstrated that environmental conditions and postprocessing algorithms can influence the accuracy and utility of these surveys and must be given consideration. These factors can lead to mapping errors that can have a direct bearing on derivative analyses such as hydraulic modeling and habitat assessment. We discuss the water and substrate characteristics of the sites, compare the conventional and remotely sensed river-bed topographies, and investigate the laser waveforms reflected from submerged targets to provide an evaluation as to the suitability and accuracy of the EAARL system and associated processing algorithms for riverine mapping applications.

Journal of the American Water Resources Associatio↗

USGS2008

Correlation of the Deccan and Rajahmundry Trap lavas: Are these the longest and largest lava flows on Earth?

We propose that the Rajahmundry Trap lavas, found near the east coast of peninsular India , are remnants of the longest lava flows yet recognized on Earth (∼ 1000 km long). These outlying Deccan-like lavas are shown to belong to the main Deccan Traps. Several previous studies have already suggested this correlation, but have not demonstrated it categorically. The exposed Rajahmundry lavas are interpreted to be the distal parts of two very-large-volume pāhoehoe flow fields, one each from the Ambenali and Mahabaleshwar Formations of the Wai Sub-group in the Deccan Basalt Group. Eruptive conditions required to emplace such long flows are met by plausible values for cooling and eruption rates, and this is shown by applying a model for the formation of inflated pāhoehoe sheet flow lobes. The model predicts flow lobe thicknesses similar to those observed in the Rajahmundry lavas. For the last 400 km of flow, the lava flows were confined to the pre-existing Krishna valley drainage system that existed in the basement beyond the edge of the gradually expanding Deccan lava field, allowing the flows to extend across the subcontinent to the eastern margin where they were emplaced into a littoral and/or shallow marine environment. These lavas and other individual flow fields in the Wai Sub-group may exceed eruptive volumes of 5000 km 3 , which would place them amongst the largest magnitude effusive eruptive units yet known. We suggest that the length of flood basalt lava flows on Earth is restricted mainly by the size of land masses and topography. In the case of the Rajahmundry lavas, the flows reached estuaries and the sea, where their advance was perhaps effectively terminated by cooling and/or disruption. However, it is only during large igneous province basaltic volcanism that such huge volumes of lava are erupted in single events, and when the magma supply rate is sufficiently high and maintained to allow the formation of very long lava flows. The Rajahmundry lava fields were emplaced around 65 Ma during the later times of Deccan volcanism, probably just after the K/T environmental crisis. However, many lava-forming eruptions of similar magnitude and style straddled the K/T boundary.

Rajahmundry Trap↗