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Self-guided decision support groundwater modelling with Python

The GMDSI tutorial notebooks repository provides learners with a comprehensive set of tutorials for self-guided training on decision-support groundwater modelling using Python-based tools. Although targeted at groundwater modelling, they are based around model-agnostic tools and readily transferable to other environmental modelling workflows. The tutorials are divided into three parts. The first covers fundamental theoretical concepts. These are intended as background reading for reference on an as-needed basis. Tutorials in the second part introduce learners to some of the core concepts parameter estimation in a groundwater modelling context, as well as providing a gentle introduction to the PEST, PEST++ and pyEMU software. Lastly, the third part demonstrates how to implement highly-parameterized applied decision-support modelling workflows. The tutorials aim to provide examples of both “how to use” the software as well as “how to think” about using the software. A key advantage to using notebooks in this context is that the workflows described run the same code as practitioners would run on a large-scale real- world application. Using a small synthetic model facilitates rapid progression through the workflow.

Journal of Open Source Education

Estimation of dynamic geologic CO2 storage resources in the Illinois Basin, including effects of brine extraction, anisotropy, and hydrogeologic heterogeneity

Since the vast majority of carbon dioxide (CO 2 ) storage resources in the United States are in deep saline aquifers, optimizing the use of these saline storage resources could be crucial for efficient development of geologic CO 2 storage (GCS) resources and basin- or larger-scale deployment of GCS in the country. Maximum CO 2 injection rates can be enhanced by extracting brine from the CO 2 storage unit. However, disposal of the extracted brine is both a technological and economic challenge. The lowest-cost option would likely be reinjection of the extracted brine into another formation above or below the CO 2 storage unit. Therefore, it is important to estimate brine injectivity as it will constrain the potential to increase CO 2 injectivity at an injection site that has access to multiple geologic storage units where either CO 2 or brine can be injected. Using a simulation-optimization framework, coupled with a non-isothermal, multiphase CO 2 -water-salt equation-of-state module, we developed a computationally efficient method for evaluating optimization of simultaneous CO 2 injection, brine extraction, and brine (re)injection at hypothetical injection sites deployed across a geologic basin. The Illinois basin is ideal for testing our methodology because it contains multiple geologic storage units with seals in between them to isolate injection of CO 2 in one unit from interfering with the injection of either brine or CO 2 in another unit above or below it. In addition, we investigated the relative effects of variation in key geologic parameters as well as two reservoir structures (hydrogeologic heterogeneity/anisotropy and homogeneity/isotropy) on CO 2 injectivities and enhancement of CO 2 injectivity through extracting brine. Results suggest that permeability, depth, and especially thickness of the storage unit could be the most influential parameters determining CO 2 injectivity. They also suggest that only injecting CO 2 into the storage unit with the greatest injectivity, enhancing that unit’s injectivity by extracting brine, and disposing of the produced brine in other suitable units could maximize total CO 2 injectivity in limited regions of the basin. At the majority of simulated injection sites, however, we found that injecting CO 2 into all of the accessible and suitable storage units was more likely to maximize the CO 2 storage resource.

Illinois, Kentucky, Indiana

Modeling interconnected minerals markets with multicommodity supply curves: Examining the copper-cobalt-nickel system

Demand for many of the metals used in the energy transition is expected to grow rapidly. Many of these are by-products, often considered critical because their production responds weakly to prices and is instead tied to the economics of the host mineral. We present a model of prices and production for jointly produced commodities that accounts for interconnectivity between host and by-product markets at the mine level. We demonstrate this method using the copper–cobalt–nickel system, in which approximately 99% of cobalt is a by-product of copper or nickel mining. Our results show that the model more accurately captures the economic benefits of diversified mine outputs than previous approaches. Furthermore, changes in demand drivers for any two commodities produce non-linear effects on production and price. We challenge the prior best-practice assumption that cobalt cannot impact the copper or nickel markets. Recognizing the importance of both copper and cobalt for future electrification, we emphasize that incentivizing the copper industry to reduce cobalt supply risks could inadvertently undermine copper supply.

Nature Communications

Climate-driven sulfate export in alpine watersheds may stimulate methylmercury production

Climate change is increasing sulfate export and changing wetland extent in mountain regions. These changes may increase microbially mediated production of the neurotoxic substance methylmercury due to enhanced sulfate metabolism in mountain environments. Here, we assess methylmercury concentrations and formation rates across high-elevation wetlands in the Colorado Rocky Mountains. We also investigate sulfate controls on methylmercury production within subalpine peatlands by amending soils with sulfate to mimic increased stream export of sulfate from the alpine zone and measuring methylmercury formation rates for different sulfate treatments. We found that subalpine peatlands have statistically significant higher methylmercury concentrations and formation rates compared to alpine, mineral-soil wetlands. Methylmercury production in subalpine peatlands also increased significantly ( p < 0.05) following sulfate additions; the highest rates occurred in sediments with intermediate extractable sulfate concentrations (∼0.60–1.4 mg sulfate g −1 dry soil). Our study is the first to identify soil sulfate-related thresholds for methylmercury production and sulfate-limitation of methylmercury production in subalpine peatlands. These findings highlight important linkages between climate-driven mineral weathering and mercury cycling in mountain regions globally.

Colorado

Quantitative risk of earthquake disruption to global copper and rhenium supply

Earthquakes have the potential to substantially affect mining operations, potentially leading to supply chain disruptions and adversely affecting the global economy. This study explores the quantification of earthquake risk to copper and rhenium commodity supply by examining the spatial concentration of high earthquake hazard areas and the commodity-specific mining, smelting, and refining operations across the globe. Because many of the largest facilities are concentrated geographically near the highly seismic regions of South America, East Asia, and the Pacific, there is a potential for cascading effects on the entire supply chain. The analysis indicates that the expected annual disruption of global production is 0.3–1.1 percent for copper mines, 1.8–4.0 percent for smelters, and 1.5–3.3 percent for refineries. Expected annual disruption of global rhenium production capacity is 0.32–1.32 percent. The research highlights that the potential lost revenue from earthquake disruptions is from $315 million to $1.29 billion for copper mining, $1.92 billion to $4.33 billion for copper smelting, $2.06 billion to $4.52 billion for copper refining, and $337,000 to $1.40 million for rhenium production capacity.

Open-File Report

Tectonically driven integration of the 4.8 Ma Colorado River USA tracked with detrital sanidine and fish genetics

The development of the continental-scale Colorado River system, western USA, from 8 to 4.8 Ma, is revealed using 60-40 Ma detrital sanidine tracer grains and fish phylogeny. Here we show that precursor paleoriver segments became integrated north to south as traced by 60-40 Ma sand grains that were derived from the north and sequentially appeared in the 25-8 Ma Browns Park Formation of Utah, 7-6 Ma upper Bidahochi Formation of Arizona, and 4.8 Ma Bouse Formation of the lower Colorado River and proto Gulf of California. This timing is mimicked by molecular clock estimates of divergence times among fish lineages. River integration was a response to headwater uplifts in the Yellowstone hotspot track and Rocky Mountains. 40 Ar/ 39 Ar ages refine the timing for mantle-drips that caused subsidence, then uplift, of depositional basins that influenced the integration pathway and tempo. The ~ 3-million-year timescale suggests that multiscale mantle-driven uplift, rather than lake spillover, was the primary driver for integration of the proto-Colorado River through Grand Canyon.

Colorado River

Perspectives on transportable array Alaska background noise levels

Background seismic noise fundamentally sets a lower bound on our ability to record signals arising from earthquakes. The background noise spectrum at a station is a combination of cultural noise, ocean-generated microseism noise, intrinsic instrument self-noise, and the sensitivity of the instrument to nonseismic noise sources. The USArray-Transportable Array Alaska deployed 195 stations across Alaska and parts of Canada (Yukon, British Columbia, and Northwest Territories). These stations were all installed using similar techniques and made use of instruments with similar self-noise levels. As such, this network provides an opportunity to look at how geographic location influences seismic background. Using these broadband stations, we report background noise levels from 0.2 to 75 s period in six discrete bands. By constructing “noise maps,” we depict both spatial and temporal changes in the background noise field. Using these maps, combined with targeted analysis, we infer sources and contributing factors to noise levels in these different period bands. These include cultural noise, the formation of sea ice, seasonal changes in permafrost and wave activity in the Gulf of Alaska, and magnetic field variability. We use this study as an opportunity to review several previous studies examining seismic noise in Arctic regions.

Book chapter

Digitizer Suite: The Albuquerque Seismological Laboratory Digitizer Testing Suite

Laboratory testing of digitizers and seismometers helps ensure that prior to deployment the instrumentation can produce high quality data and is operating within specifications. In this work we detail the software package called: the Albuquerque Seismological Laboratory (ASL) Digitizer Test Suite. This Java software package provides several algorithms to verify various performance parameters of digitizers commonly used for recording analog seismic instruments. The goal of these tests is not to be exhaustive, but to identify common failures that could compromise the integrity of seismic data being recorded on the digitizer. For example, Sandia National Laboratories (e.g., Slad and Merchant, 2018) routinely do comprehensive testing of digitizers for various monitoring missions. While these tests reports are valuable for comprehensively characterizing a recording system, it would be resource intensive to conduct such tests on every seismic recorder used in a network. We focus on tests that include ways to estimate the sensitivity, timing, self-noise, and clip-level of the digitizer, as well as the fidelity of the signal being recorded. The software is publicly available and provides a way for the community to verify the integrity of a digitizer using a minimum amount of outside equipment.

Seismological Research Letters

Bayesian ETAS modeling for the Pacific Northwest: Uncovering effects of tectonic regimes, regional differences, and swarms on aftershock parameters

The Pacific Northwest (PNW) of North America has high seismic hazard due to numerous earthquake sources under populated areas. It hosts several tectonic regimes and subregional seismic zones that are hypothesized to have different patterns of earthquake and aftershock occurrence. It is also predisposed to earthquake swarms, which can complicate the statistical modeling of these patterns. We present the first statistical seismicity model of the PNW catalog using the epidemic‐type aftershock sequence (ETAS) framework. We develop a Bayesian inference procedure that provides a stable estimation of both ETAS parameters and their uncertainties for different sets of PNW earthquakes, even those with very sparse catalogs. The Bayesian approach allows us to investigate how parameter estimates change between the intraslab and crustal tectonic regimes, the northern and southern PNW, and when swarms are included and excluded from the catalog. We also utilize our Bayesian framework to calculate parameter estimates under different prior beliefs about PNW seismicity, as well as to propagate catalog measurement errors into ETAS parameter estimates. We discuss the implications of parameter differences across the region for aftershock forecasting for the PNW.

Pacific Northwest

Uncertainty and spatial correlation in station measurements for mb magnitude estimation

The body‐wave magnitude (⁠⁠) is a long‐standing network‐averaged, amplitude‐based magnitude used to estimate the magnitude of seismic sources from teleseismic observations. The U.S. Geological Survey National Earthquake Information Center (NEIC) relies on in its global real‐time earthquake monitoring mission. Although waveform modeling‐based moment magnitudes are the modern standard to characterize earthquake size, is important because (1) in many cases, waveform modeling is not possible (e.g., low signal‐to‐noise events), (2) is applicable over a broad range of magnitudes, ∼M 4–7, and (3) there is a many decades‐long history of estimating magnitudes. We use the NEIC Preliminary Determination of Epicenters earthquake catalog to investigate the uncertainty in NEIC station measurements. We show that measurements are spatially correlated, which can bias event ⁠, and we describe an empirical relation between this spatial correlation and station‐to‐station distance. We further describe an approach to mitigate bias from the spatial correlation. Accounting for the spatial covariance of observations can change the event from −0.15 to 0.07 units (10th to 90th percentile) for smaller events (⁠⁠). These smaller events have the largest standard deviations ranging from 0.05 to 0.15 units (10th to 90th percentile).

The Seismic Record

Testing characteristic magnitude distributions in modern PSHA models

The characteristic magnitude distribution hypothesis predicts a higher rate of large earthquakes than a Gutenberg–Richter extrapolation of the small‐earthquake rate would imply. Characteristic magnitude distributions have been commonly applied to faults in probabilistic seismic hazard analysis (PSHA), and in modern models they can emerge from the way short‐term seismicity constraints are combined with long‐term geologic and geodetic constraints. We test the characteristic magnitude distribution hypothesis by comparing the fault‐based magnitude distributions from the 2023 update to the National Seismic Hazard Model (NSHM23) in the Western United States with observed seismicity over the past 93 yr. We find that observed magnitude distributions fall outside the model‐predicted confidence bounds in regions where NSHM23 produces characteristic magnitude distributions: in these regions, the model predicts higher rates of large earthquakes than are observed. An analysis of the earlier California model (Uniform California Earthquake Rupture Forecast, version 3) also reveals discrepancies between the modeled and observed magnitude distributions. In addition, we find that observed magnitude distributions near modeled faults are not significantly different from those in background regions. These results challenge the prevalence of characteristic magnitude distributions in fault‐based seismic hazard models and call for a reassessment of how disparate data sets are integrated in PSHA.

western United States

Paleomagnetism of the Harrat Rahat volcanic field, Kingdom of Saudi Arabia—Geologic unit correlations and geomagnetic cryptochron identifications

Paleomagnetic rock samples were collected from 173 drill sites in the Quaternary alkali basaltic volcanic field of northern Harrat Rahat, Kingdom of Saudi Arabia. Laboratory measurements on these samples established that lava flows and vent complexes—identified and mapped from field characteristics, rock types, and compositions as products of single or temporally close eruptions—typically record single, or very similar, directions of remanent magnetization. Correlations defined through geologic mapping, spatial association, geochemistry, geochronology, and identical mean remanent directions indicate at least 16 brief episodes of temporally clustered eruptions. These episodes had durations of a few centuries or less. Anomalous remanent magnetic directions were found for at least 13 mapped lavas of northern Harrat Rahat, which demonstrate that they were acquired during brief geomagnetic cryptochrons during the Brunhes Normal Polarity Chron. These uncharacteristic directions enhance the opportunity to identify common eruptive episodes, and to better understand and evaluate assessments of eruption ages based on 40 Ar/ 39 Ar geochronology. Combining paleomagnetic and regional archaeomagnetic results for the youngest eruptions allows us to evaluate their historical age assignments and, in one case, refute a previously assigned provisional age.

Harrat Rahat volcanic field

The feasibility of using lidar-derived digital elevation models for gravity data reduction

Gravity data require submeter elevation accuracy for data processing, and differential global navigation satellite system (dGNSS) equipment is commonly used to acquire three-dimensional positional data to achieve such accuracy. However, lidar (light detection and ranging) data are commonly used to develop digital elevation models (DEMs) of Earth’s surface. Therefore, using elevations from lidar-derived DEMs for gravity-data acquisition and reduction may improve field efficiency and reduce cost. This study examines the feasibility of using DEMs for gravity-data reduction by comparing dGNSS elevation data from 435 gravity stations in Michigan, Wyoming, and Colorado with their respective DEM elevations. The results show that the average difference between DEM and dGNSS elevations is 13 centimeters (cm) and that 93 percent of those differences are less than 50 cm, even in areas with steep terrain. Because an elevation discrepancy of 50 cm corresponds to an error of roughly 0.1 milligals (mGal) in the simple Bouguer gravity anomaly, the results suggest that lidar-derived DEMs are a viable source for acquiring the elevation data needed to process gravity data, thus improving both the cost and efficiency of data collection for regional surveys where an accuracy of less than 1.0 mGal is desired.

Open-File Report

PEST++IES how many iterations & realizations, finding the point of diminishing returns

PEST++IES (White 2018; White et al. 2020) is widely used in the groundwater modeling community for its ability to perform computationally efficient history matching and uncertainty analysis in a highly parameterized context. One primary advantage of using an iterative ensemble smoother is that the number of model runs required per iteration depends on the number of realizations in an ensemble, not the number of parameters in each realization. However, this raises the question: what is the optimal number of realizations and iterations to use for any one model before the point of diminishing returns? Using a modified version of the Freyberg model (Freyberg 1988; Hunt et al. 2020), different parameter and observation scenarios were evaluated for four iterations and ensembles of 10, 25, 50, 100, 250, 500, 1000, and 2000 realizations. To match observations, PEST++IES altered hydraulic conductivity ( k ), both globally across the model and locally at three different pilot point densities, as well as global recharge (via a single multiplier), global river conductance, and individual well flow rates. Risk-based well capture zone results (Fienen et al. 2022a) and estimated hydraulic conductivity fields from each scenario were quantitatively and qualitatively compared against the “truth” model and its outputs. Across the cases examined, ensemble sizes of 100 to 250 realizations and two PEST++IES iterations were generally sufficient to achieve good results.

Groundwater

An entropic explanation for Gutenberg-Richter scaling

We develop a simple explanation for Gutenberg-Richter (G-R) size scaling of earthquakes on a single fault. We discretize the fault and consider all possible contiguous ruptures at that level of discretization. In this static model, we assume that slip scales with rupture length, and that the rupture rates at each point along the fault are consistent with an a priori long-term slip rate. These simple assumptions define an (under-determined) non-negative least-squares inverse problem. Each solution to this inverse problem is a set of earthquake rates that matches the slip-rate constraint. We use a Markov Chain Monte Carlo (MCMC) algorithm to uniformly sample the solution space assuming constant slip rates along the fault. At finer discretizations, deviations from G-R behavior decrease, which is consistent with an entropic pressure towards G-R solutions. When the fault is discretized into 10 or more segments, random solutions found by the MCMC algorithm have G-R size scaling, even though there are trivial solutions that, for example, have earthquakes of only one size. This is because there are simply far more solutions that have G-R scaling; as the problem size increases, the strong degeneracy of GR solutions results in other solutions becoming improbably rare. Also, the entropically favored G-R distribution has a b -value of approximately 1, which agrees with measured b -values in real earthquake catalogs.

JGR Solid Earth

Reconnaissance basement geology and tectonics of North Zealandia

New rock dredge samples supply key information to establish the tectonic and geological framework of the northern two-thirds of the 95% submerged Zealandia continent. The R/V Investigator voyage IN2016T01 to the Fairway Ridge, Coral Sea, obtained poorly sorted poly-lithologic pebbly to cobbly sandstones, well sorted fine grained sandstones, mudstones, bioclastic limestones, and basaltic lavas. Post-cruise analytical work comprised petrography, whole rock geochemical and Sr and Nd isotopic analyses, and U-Pb zircon, Rb-Sr, and Ar-Ar geochronology. A Fairway Ridge cobbly sandstone has a ∼95 Ma (early Late Cretaceous) depositional age; two biotite granite cobbles are 111 ± 1 and 128 ± 1 Ma in age, and some volcanic pebbles are also likely Early Cretaceous. Fairway Ridge basalts have intraplate alkaline chemistry and are of Late Eocene age (∼40–36 Ma). By analogy with South Zealandia, we interpret strong positive continental magnetic anomalies of North Zealandia to mainly result from Late Cretaceous to Cenozoic intraplate basalts, many of them rift-related lavas. A new basement geological map of North Zealandia shows the position of the Mesozoic Gondwana magmatic arc axis (Median Batholith) and other major geological units. This study completes onland and offshore reconnaissance geological mapping of the entire 5 Mkm 2 Zealandia continent.

Tectonics

Small-volume tephra deposits of the May 1924 explosions from Halemaʻumaʻu, Kīlauea volcano, and their origin

More than 50 explosive eruptions occurred from Halemaʻumaʻu at Kīlauea volcano over 17 days from May 11 to 27, 1924. Ballistics weighing as much as 14,000 kg were ejected and most landed within 2 km of the vent. Fine ash made up a major component of the tephra and was dispersed tens of kilometers downwind. Draining of the Halemaʻumaʻu lava lake occurred in late February 1924, with the crater floor eventually subsiding by a further ∼70 m (to ∼180 m below the crater rim) by the time the first explosions took place during the night of May 10–11. The largest explosions occurred on May 17–18 and smaller explosions continued until May 27, at which point Halemaʻumaʻu had more than doubled in width and depth. The explosions generated plumes reaching up to ∼10 km high with ballistics ejected up to 2 km from the crater. Almost 100 years later, we investigate and characterize the preserved tephra deposits within ∼3 km of the 1924 crater rim. Grain size and shape analyses were performed on 202 samples collected from 34 tephra profiles using dynamic image analysis, with a subset of layers from nine tephra profiles used for componentry (200 grains per layer in the 0.5–1 mm size fraction). Additionally, we characterize the average diameters (using the five largest clasts) at 216 locations and measure the average diameters of 2291 ballistics (largest per ∼100 m 2 area). Physical descriptions from fieldwork and grain size distributions were used to subdivide the tephra layers into five lithofacies: coarse homogeneous, fine homogenous, red ash, accretionary lapilli-bearing, and finely laminated. Grain size versus shape data show a range of values that demonstrate most grains are dense, smooth, and equant, in alignment with lithic clasts dominating the tephra componentry. The fine grained and accretionary lapilli-bearing nature of some of these lithofacies confirms that water influenced the style of the explosions. However, we also note juvenile clasts within many of the tephra layers, indicating that many of the layers were formed during phreatomagmatic explosions (sensu stricto), despite the eruptive mechanism being dominantly phreatic. Juvenile clasts are more abundant higher in the tephra profiles, suggesting that juvenile magma was more involved later in the explosive sequence. Thermal and hydrologic modeling indicate that groundwater inflow into a short-lived, small-diameter volcanic conduit (10-m to 120-m-diameter used for modeling) during the 78–85 days preceding the first explosion provides a physically plausible mechanism for this eruptive sequence.

Hawaii

Projections of multiple climate-related coastal hazards for the US Southeast Atlantic

Faced with accelerating sea level rise and changing ocean storm conditions, coastal communities require comprehensive assessments of climate-driven hazard impacts to inform adaptation measures. Previous studies have focused on flooding but rarely on other climate-related coastal hazards, such as subsidence, beach erosion and groundwater. Here, we project societal exposure to multiple hazards along the Southeast Atlantic coast of the United States. Assuming 1 m of sea level rise, more than 70% of the coastal residents and US \ $ 1 trillion in property are in areas projected to experience shallow and emerging groundwater, 15 times higher than daily flooding. Storms increase flooding exposure by an order of magnitude over daily flooding, which could impact up to ~50% of all coastal residents and US \ $ 770 billion in property value. The loss of up to ~80% of present-day beaches and high subsidence rates that currently affect over 1 million residents will exacerbate flooding and groundwater hazard risks.

Florida, Georgia, North Carolina, South Carolina,