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New software methods in radar ornithology using WSR-88D weather data and potential application to monitoring effects of climate change on bird migration

Radar ornithology has provided tools for studying the movement of birds, especially related to migration. Researchers have presented qualitative evidence suggesting that birds, or at least migration events, can be identified using large broad scale radars such as the WSR-88D used in the NEXRAD weather surveillance system. This is potentially a boon for ornithologists because such data cover a large portion of the United States, are constantly being produced, are freely available, and have been archived since the early 1990s. A major obstacle to this research, however, has been that identifying birds in NEXRAD data has required a trained technician to manually inspect a graphically rendered radar sweep. A single site completes one volume scan every five to ten minutes, producing over 52,000 volume scans in one year. This is an immense amount of data, and manual classification is infeasible. We have developed a system that identifies biological echoes using machine learning techniques. This approach begins with training data using scans that have been classified by experts, or uses bird data collected in the field. The data are preprocessed to ensure quality and to emphasize relevant features. A classifier is then trained using this data and cross validation is used to measure performance. We compared neural networks, naive Bayes, and k-nearest neighbor classifiers. Empirical evidence is provided showing that this system can achieve classification accuracies in the 80th to 90th percentile. We propose to apply these methods to studying bird migration phenology and how it is affected by climate variability and change over multiple temporal scales.

Conference Paper

Further data on removal and repopulation of the breeding birds in a spruce-fir forest community

During June and July of 1950 the writers were engaged in a study of bird populations in northern Maine in conjunction with investigations to determine the effectiveness of the breeding bird population as a controlling agent of the spruce budworm, Choristoneura fumiferana . The field work was started in 1949 and the current project was a continuation. The entomological phase of the study during both seasons was conducted under the supervision of Philip B. Dowden and V. M. Carolin of the Bureau of Entomology and Plant Quarantine; the initial bird population study was made by John W. Aldrich and Robert E. Stewart of the Fish and Wildlife Service (See page 471 of this issue of 'The Auk'). Many data were accumulated concerning bird population dynamics during the initial study. To compare the results of the two seasons and to present other significant facts, additional data are presented here.

The Auk

[Book review] Cowbirds and Other Brood Parasites by Catherine Ortega. Tucson, Arizona: University of Arizona Press (1998). The Avian Brood Parasites: Deception at the Nest by Paul A. Johnsgard. New York: Oxford University Press (1997) Parasitic Birds and their Hosts: Studies in Coevolution edited by S.I. Rothstein & S.K. Robinson. New York: Oxford University Press (1998)

We are in a golden age for the study of brood parasitism, judging from both the quantity and quality of recent scientific publications on cuckoos, cowbirds and parasitic finches by investigators working in Europe, the Americas, Africa and Asia. As Johnsgard (1997) remarks in his preface, the evolutionary, ecological, and behavioural questions posed by obligate brood parasites are among the most intriguing contemporary ornithological topics. Rothstein & Robinson (1998) explain that brood parasites make ideal subjects for testing the generality of models for the evolution of social and mating behaviour, foraging behaviour, spatial distribution, and vocal development, because the strategy of providing no parental care removes constraints imposed on other birds. Since Aristotle, people have been fascinated by brood parasites, but only in the past two decades has the number of investigators working on this topic reached a critical mass and created momentum that promises many breakthroughs. New studies are being completed so rapidly that a general book is inevitably out of date on some topics by the time it is published. A complete library on brood parasitism should add two recent volumes (Morrison et al. 1999; Smith et al., in press).to the three reviewed here.

Animal Behaviour

Effects of dietary selenium on tissue concentrations,pathology, oxidative stress, and immune function in common eiders (Somateria mollissima)

Common eiders ( Somateria mollissima ) were fed added Se (as L-selenomethionine) in concentrations increasing from 10 to 80 ppm in a pilot study (Study 1) or 20 (low exposure) and up to 60 (high exposure) ppm Se in Study 2. Body weights of Study 1 ducks and high-exposure ducks in Study 2 declined rapidly. Mean concentrations of Se in blood reached 32.4 ppm wet weight in Study 1 and 17.5 ppm wet weight in high-exposure birds in Study 2. Mean Se concentrations in liver ranged from 351 (low exposure, Study 2) to 1252 ppm dry weight (Study 1). Oxidative stress was evidenced by Se-associated effects on glutathione metabolism. As Se concentrations in liver increased, Se-dependent glutathione peroxidase activity, glutathione reductase activity, oxidized glutathione levels, and the ratio of hepatic oxidized to reduced glutathione increased. In Study 2, the T-cell-mediated immune response was adversely affected in high-exposure eiders, but ducks in the low-exposure group exhibited evidence of an enhanced antibody-mediated immune response. Gross lesions in high-exposure ducks included emaciation, absence of thymus, and loss of nails from digits. Histologic lesions included severe depletion of lymphoid organs, hepatopathy, and necrosis of feather pulp and feather epithelium. Field studies showed that apparently healthy sea ducks generally have higher levels of Se in liver than healthy fresh-water birds, but lower than concentrations found in our study. Data indicate that common eiders and probably other sea ducks possess a higher threshold, or adverse effect level, for Se in tissues than fresh-water species. However, common eiders developed signs of Se toxicity similar to those seen in fresh-water birds.

Journal of Toxicology and Environmental Health, Pa

Nest-site fidelity and dispersal of Gyrfalcons estimated by noninvasive genetic sampling

We used feathers from adult Gyrfalcons (Falco rusticolus) molted in breeding territories and blood samples from nestlings to document nest-site fidelity and dispersal of breeding adults and juveniles at three areas 100- 350 km apart in Yukon Delta National Wildlife Refuge, Alaska, 2003-2007. We used genotypes from seven polymorphic microsatellite loci that provided a mean probability of identity of 0.91 ??10 -5. Breeding Gyrfalcons were highly faithful to study area and territory; we documented no dispersals of breeding birds among study areas and only one dispersal between territories. But their fidelity to nest sites was low; 22% of birds returned to the same nest site the following year. Distance among alternate nests within a territory averaged 750 m and was similar for both sexes. Mean tenure in a territory was 2.8 years, similar for both sexes, and distributed bimodally with peaks at 1 and 4 years. Mean annual turnover rate at the Ingakslugwat Hills (Volcanoes) study area was 20%. We detected three young that established breeding territories at distances ranging from 0 to 254 km from their natal territory, representing 2.5% apparent recruitment. Gyrfalcons in the Askinuk Mountains study area were slightly but statistically significantly differentiated genetically from those in the Volcanoes and Kilbuck Mountain study areas. These data are the first published on the nest-site fidelity, breeding dispersal, and natal dispersal of the Gyrfalcon in North America and demonstrate the utility of noninvasive genetic sampling to greatly improve our understanding of avian dispersal and its underlying mechanisms. ?? The Cooper Ornithological Society 2011.

Conference Paper

Grassland bird use of Conservation Reserve Program fields in the Great Plains

An enormous area in the Great Plains is currently enrolled in the Conservation Reserve Program (CRP): 19.5 million acres (nearly 8 million ha) in Montana, North Dakota, South Dakota, Wyoming, Nebraska, Colorado, Kansas, Oklahoma, and Texas. This change in land use from cropland to grassland since 1985 has markedly influenced grassland bird populations. Many, but certainly not all, grassland species do well in CRP fields. The responses by birds to the program differ not only by species but also by region, year, the vegetation composition in a field, and whether or not a field has been hayed or grazed. The large scale and extent of the program has allowed researchers to address important conservation questions, such as the effect of the size of habitat patch and the influence of landscape features on bird use. However, most studies on nongame bird use of CRP in or near the Great Plains have been short-lived; 83% lasted only 1-3 years. Further, attention to the topic seems to have waned in recent years; the number of active studies peaked in the early 1990s and dramatically declined after 1995. Because breeding-bird use of CRP fields varies dramatically in response both to vegetational succession and to climatic variation, long-term studies are important. What was learned about CRP in its early stages may no longer be applicable. Finally, although the CRP provisions of the Farm Bill have been beneficial to many grassland birds, it is critical that gains in grassland habitat produced by the program not be off set by losses of native prairie.

Wildlife Society Technical Review

Prioritizing landscapes for grassland bird conservation with hierarchical community models

Context Given widespread population declines of birds breeding in North American grasslands, management that sustains wildlife while supporting rancher livelihoods is needed. However, management effects vary across landscapes, and identifying areas with the greatest potential bird response to conservation is a pressing research need. Objectives We developed a hierarchical modeling approach to study grassland bird response to habitat factors at multiple scales and levels. We then identified areas to prioritize for implementing a bird-friendly ranching program. Methods Using bird survey data from grassland passerine species and 175 sites (2009–2018) across northeast Wyoming, USA, we fit hierarchical community distance sampling models and evaluated drivers of site-level density and regional-level distribution. We then created spatially-explicit predictions of bird density and distribution for the study area and predicted outcomes from pasture-scale management scenarios. Results Cumulative overlap of species distributions revealed areas with greater potential community response to management. Within each species’ potential regional-level distribution, the grassland bird community generally responded negatively to cropland cover and vegetation productivity at local scales (up to 10 km of survey sites). Multiple species declined with increasing bare ground and litter cover, shrub cover, and grass height measured within sites. Conclusions We demonstrated a novel approach to multi-scale and multi-level prioritization for grassland bird conservation based on hierarchical community models and extensive population monitoring. Pasture-scale management scenarios also suggested the examined community may benefit from less bare ground cover and shorter grass height. Our approach could be extended to other bird guilds in this region and beyond.

Wyoming

Removal and repopulation of breeding birds in a spruce-fir forest community

IN 1949, while engaged in population studies of birds in northern Maine, the authors accumulated considerable information concerning population dynamics of birds inhabiting the Spruce-Fir forest community. This information was obtained in connection with investigations of the effective control by breeding birds of an infestation of the spruce budworm, Choristoneura fumiferana Clem.

The Auk

Teratogenic efects of injected methylmercury on avian embryos

Controlled laboratory studies with game farm mallards ( Anas platyrhynchos ) and chickens ( Gallus gallus ) have demonstrated that methylmercury can cause teratogenic effects in birds, but studies with wild species of birds are lacking. To address this need, doses of methylmercury chloride were injected into the eggs of 25 species of birds, and the dead embryos and hatched chicks were examined for external deformities. When data for controls were summed across all 25 species tested and across all types of deformities, 24 individuals out of a total of 1,533 (a rate of 1.57%) exhibited at least one deformity. In contrast, when data for all of the mercury treatments and all 25 species were summed, 188 deformed individuals out of a total of 2,292 (8.20%) were found. Some deformities, such as lordosis and scoliosis (twisting of the spine), misshapen heads, shortening or twisting of the neck, and deformities of the wings, were seldom observed in controls but occurred in much greater frequency in Hg-treated individuals. Only 0.59% of individual control dead embryos and hatchlings exhibited multiple deformities versus 3.18% for Hg-dosed dead embryos and hatchlings. Methylmercury seems to have a widespread teratogenic potential across many species of birds.

Environmental Toxicology and Chemistry

Field evaluation of distance-estimation error during wetland-dependent bird surveys

Context: The most common methods to estimate detection probability during avian point-count surveys involve recording a distance between the survey point and individual birds detected during the survey period. Accurately measuring or estimating distance is an important assumption of these methods; however, this assumption is rarely tested in the context of aural avian point-count surveys. Aims: We expand on recent bird-simulation studies to document the error associated with estimating distance to calling birds in a wetland ecosystem. Methods: We used two approaches to estimate the error associated with five surveyor's distance estimates between the survey point and calling birds, and to determine the factors that affect a surveyor's ability to estimate distance. Key results: We observed biased and imprecise distance estimates when estimating distance to simulated birds in a point-count scenario ( x̄ error = -9 m, s.d. error = 47 m) and when estimating distances to real birds during field trials ( x̄ error = 39 m, s.d. error = 79 m). The amount of bias and precision in distance estimates differed among surveyors; surveyors with more training and experience were less biased and more precise when estimating distance to both real and simulated birds. Three environmental factors were important in explaining the error associated with distance estimates, including the measured distance from the bird to the surveyor, the volume of the call and the species of bird. Surveyors tended to make large overestimations to birds close to the survey point, which is an especially serious error in distance sampling. Conclusions: Our results suggest that distance-estimation error is prevalent, but surveyor training may be the easiest way to reduce distance-estimation error. Implications: The present study has demonstrated how relatively simple field trials can be used to estimate the error associated with distance estimates used to estimate detection probability during avian point-count surveys. Evaluating distance-estimation errors will allow investigators to better evaluate the accuracy of avian density and trend estimates. Moreover, investigators who evaluate distance-estimation errors could employ recently developed models to incorporate distance-estimation error into analyses. We encourage further development of such models, including the inclusion of such models into distance-analysis software.

Wildlife Research

Breeding Bird Survey and bird banding data: Applications to raptor research and management

The Breeding Bird Survey (BBS) and Bird Banding Laboratory (BBL) are sources of information for raptor biologists. The BBS has been conducted each year since 1966 in the United States and Canada; historical bird banding records extend back to the early 20th century. BBS data can be used to document population trends and breeding distributions of many bird species. Banding data are generally collected for specific and local studies of bird populations or behavior. Past use of these data has been limited by their volume and relative inaccessibility. In this paper, we present an overview of BBS and BBL raptor data and their uses, limitations and availability.

Book chapter

Capturing birds with mist nets: A review

Herein we have tried to provide a comprehensive review of mist-netting techniques suitable for both novice and experienced netters. General mist-netting procedures and modifications developed by netters for particular bird species and habitats are included. Factors which influence capture success, including site selection, net specifications and placement, weather, and time of day, are discussed. Guidelines are presented for the care of netted birds and the use of mist-net data in the study of bird communities. The advantages of the use of mist nets over other methods of capturing birds are also discussed.

North American Bird Bander

Understanding the Avian-Impact Offset Method—A tutorial

Biodiversity offsetting, or compensatory mitigation, is increasingly being used in temperate grassland and wetland ecosystems to compensate for unavoidable environmental damage from anthropogenic disturbances such as energy development and road construction. Energy-extraction and -generation facilities continue to proliferate across the natural landscapes of the United States, yet mitigation tools to ameliorate the negative behavioral effects on wildlife from these types of facilities are rarely implemented. Scientists from the U.S. Geological Survey conducted a 10-year before-after-control-impact (commonly referred to as BACI) study that evaluated the displacement effects of wind facilities on breeding grassland birds. The study determined behavioral avoidance for 7 of 9 species. This research is notable because of its design, geographical scope, and duration, which allowed for the determination of immediate, short-term effects; delayed or sustained effects; and discrete distances at which effects occurred. In addition, the U.S. Fish and Wildlife Service and Ducks Unlimited conducted a 3-year concurrent-year paired-reference study to determine behavioral avoidance for five species of dabbling ducks. By quantifying displacement rate from these two studies, U.S. Geological Survey and U.S. Fish and Wildlife Service scientists developed the Avian-Impact Offset Method (AIOM) to quantify and compensate for loss in value of breeding habitat. The AIOM converts the biological value (that is, number of bird pairs) lost by way of avoidance and estimates the site-specific number of hectares of grasslands and number of wetlands needed to compensate for displaced pairs of grassland birds and waterfowl. By converting biological value to traditional units of measure in which land is described and purchased or sold, the AIOM lends itself readily to the delivery of offsetting measures such as easement protections and restoration projects. The AIOM tool is applicable to wind, solar, oil, gas, and transportation infrastructure. This tutorial was designed to increase awareness of the AIOM and to promote its proper application. The tutorial is divided into four sections, each of which explains a discrete topic concerning aspects of behavioral displacement. The first section provides geographical and biological context, and the second section describes the field and statistical methods and results. The third section provides step-by-step instructions for applying the AIOM to several scenarios involving grassland birds or waterfowl at wind or oil facilities. The fourth section describes decision-support tools created to implement the AIOM. The appendices provide the actual field protocols constituting the methods for the research, provide detailed results by species and wind facility for that research, and provide detailed instructions for downloading and applying the decision-support tools.

Open-File Report

Spatial and temporal heterogeneity in metallic elements in industrialized aquatic bird habitat

This study examined the potential for exposure of migratory aquatic birds to contaminants in highly industrialized habitats at Baltimore Harbor, Maryland. Seven nearshore, benthic sites were sampled every 3 or 6 months from June 1987 to December 1988. Twenty metallic elements were measured in composites (i.e. annelids, amphipods, and isopods were pooled), clams, and sediments. Elevated concentrations were widespread throughout the sites, depending on the element. Most concentrations in composites were lowest at sites innermost and outside the harbor. Higher concentrations in composites were not related to season. Most concentrations were higher in composites than in sediments or clams, but they varied by element for clams and sediments. The largest flock of wintering waterfowl frequented the site exhibiting the highest concentrations of most elements ( p < 0.0001). Average concentrations of known toxic elements were probably not harmful to aquatic birds or their prey, but the highest detected concentrations of eight elements warrant caution. At least eight other elements exceeded background concentrations, but toxicity to birds or their prey are unknown.

Maryland

West Nile Virus and wildlife

West Nile virus (WNV) has spread rapidly across North America, resulting in human deaths and in the deaths of untold numbers of birds, mammals, and reptiles. The virus has reached Central America and the Caribbean and may spread to Hawaii and South America. Although tens of thousands of birds have died, and studies of some bird species show local declines, few regionwide declines can be attributed to WNV. Predicting future impacts of WNV on wildlife, and pinpointing what drives epidemics, will require substantial additional research into host susceptibility, reservoir competency, and linkages between climate, mosquitoes, and disease. Such work will entail a collaborative effort between scientists in governmental research groups, in surveillance and control programs, and in nongovernmental organizations. West Nile virus was not the first, and it will not be the last, exotic disease to be introduced to the New World. Its spread in North America highlights the need to strengthen animal monitoring programs and to integrate them with research on disease ecology.

BioScience

Temporal dynamics of sagebrush songbird abundance in relation to energy development

Spatial aspects of wildlife responses to human-induced habitat change have been examined frequently, yet the temporal dynamics of responses remain less understood. We tested alternative hypotheses for how the abundance of a suite of declining songbirds in relation to energy development changed over time. We conducted point counts at two natural gas fields during two periods spanning a decade (2008–2009 and 2018–2019), and compared the abundance of sagebrush songbirds across a gradient of surface disturbance between study periods (trend-by-time). We also assessed changes in the abundance of birds between study periods relative to additional development that had occurred (trend-over-time). We predicted that abundance responses to surface disturbance would be more negative during the second period, regardless of additional disturbance that had occurred, because of previously observed inverse relationships between surface disturbance and nest survival at our sites. Contrary to our predictions, abundance responses attenuated by the second time period for two of three species, Brewer's sparrow and sage thrasher (the latter at one energy field only). Sagebrush sparrow abundance, however, consistently decreased with surface disturbance within and between periods. Sage thrasher abundance consistently decreased with surface disturbance at one of the gas fields, and the probability of colonization by thrashers between study periods was lower where additional surface disturbance had occurred. Our results highlight the importance of revisiting wildlife responses to anthropogenic habitat changes over time, to clarify the severity and longevity of effects.

Biological Conservation

Avian community response to a novel environment: Commercial forestry in the Campos grasslands of South America

Establishing commercial tree plantations in native grassland ecosystems introduces a different structural and functional vegetation cover type, with expected implications for biodiversity. To better understand biodiversity responses to afforestation, we conducted a resource-use study with birds as a focal group, during the 2013–2014 breeding season in the Northern Campos grasslands of Uruguay. We sampled birds in native environments and plantations of loblolly pine ( Pinus taeda ) and flooded gum ( Eucalyptus grandis ) at different rotation stages. We recorded 103 species during 1,573 visits (10-min, 50-meter radius point counts) to 570 stratified sampling units. Native grasslands and forests exhibited greater diversity and had greater variability in species composition than structurally homogeneous plantations. Avian communities in plantations had distinct species combinations and relative abundances not found in native conditions. Avian communities in older plantations were more similar to native forests while those of newly-planted stands were more like grasslands. However, plantations were dominated by habitat generalists and some forest-dependent species, with negligible use by grassland specialist birds. Our results suggest the best conservation opportunities for grassland-dependent birds in afforested systems of the Campos of Uruguay may depend on diverse landscape-level measures rather than stand-level management practices. Albeit our research constituted a comprehensive assessment of bird taxonomic alpha and beta diversity, research on complementary diversity facets and multi-scale resource selection and demographic studies are needed to better understand the fitness implications for conserving and managing grassland birds in afforested landscapes.

Campos grasslands