USGS ScienceSearch

SEARCH · USGS Science

Results for “Biology Open”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 127 records · Page 7Linked to original sources

Efficacy of Pseudomonas fluorescens strain CL145A spray dried powder for controlling zebra mussels adhering to native unionid mussels within field enclosures

The efficacy of a commercially prepared spray dried powder (SDP) formulation of Pseudomonas fluorescens (strain CL145A) was evaluated for removing zebra mussels ( Dreissena polymorpha ) adhering to a population of unionid mussels in Lake Darling (Alexandria, Minnesota). Two groups of unionid mussels were used in the study. Unionid mussels were collected near the test area, weighed, photographed, individually tagged, and randomly allocated to one of nine test enclosures in equal proportions and then divided into two groups. The first group of unionid mussels (Group 1, n = 5 per test enclosure) were indiscriminately selected from each test enclosure and used to estimate the number of zebra mussels adhering to unionid mussels prior to exposure. The second group of unionid mussels (Group 2, n = 22 per test enclosure) were used to evaluate the efficacy of SDP for removal of adhering zebra mussels. Both Group 1 and Group 2 mussels were used to evaluate the effects of SDP exposure on unionid mussel survival. Treatment was assigned to each test enclosure by using a randomized block design. The three treatment groups were tested in triplicate and included an untreated control group and groups that received a single application of 50 or 100 milligrams per liter (mg/L) of SDP based on active ingredient. All treatment concentrations are reported as active ingredient of SDP. Test enclosures were removed at the 8-hour exposure termination. Both Group 1 and Group 2 mussels remained in their assigned exposure location during the postexposure holding period. The number of zebra mussels adhering to Group 2 mussels (live and dead) was assessed 18 to 20 days postexposure in addition to assessing the survival of Group 1 and Group 2 unionid mussels. SDP, administered as a single treatment, significantly ( p < 0.01) reduced the number of adhering zebra mussels when compared to the untreated controls. The number of zebra mussels adhering to unionid mussels (Group 2) was reduced 53 percent in the 50-mg/L treatment group and 68 percent in the 100-mg/L treatment group. The number of adhering zebra mussels did not differ ( p = 0.79) between the 50- and 100-mg/L treatment groups after exposure. When standardized to the amount of SDP applied per square meter, each gram (g) of SDP applied in the 50-mg/L treatment reduced the number of adhering zebra mussel 59.8 percent more than the 100-mg/L treatment group. Group 1 mussel survival did not differ between treatment groups ( p > 0.05); however, a difference was detected ( p < 0.01) in the survival of Group 2 mussels. The survival of Group 2 mussels did not differ ( p > 0.23) between control and treated groups. A difference in Group 2 mussel survival was detected ( p = 0.03; odds ratio [OR] = 0.290) between the 50- and 100-mg/L treatment groups (that is, the survival was highest in the 50-mg/L treatment group and lowest in the 100-mg/L treatment group), however, the biological significance of the difference is indeterminate.

Minnesota

Physical, chemical, and biological data for two sites on the upper Kenai River, Alaska, 1998

Water-quality data were collected and stream characteristics were documented from two sites along the upper Kenai River in the Kenai National Wildlife Refuge, Alaska. These data were collected to describe the current status of the sites and to provide baseline information from which changes in the future could be evaluated. Physical characteristics included channel geometry surveys, and measurements of channel widths and water discharge at each site. Chemical data included stream water temperature, dissolved-oxygen concentration, pH, specific conductance, E. coli and fecal coliform counts, and nutrient concentration. Data on concentrations of trace elements and various organic compounds in bed sediments and the tissue of slimy sculpin were also collected. Biological characteristics were evaluated using measurements of the bacteria, benthic macroinvertebrate, and fish communities.

Open-File Report

Monitoring Ground-Water Quality in Coastal Ecosystems

INTRODUCTION The Cape Cod National Seashore (CACO) extends along more than 70 km of Atlantic Ocean open-beach coastline and includes three large saltwater bays - Wellfleet Harbor, Nauset Marsh, and Pleasant Bay (fig. 1). CACO encompasses about 18,000 ha of uplands, lakes, wetlands, and tidal lands (Godfrey and others, 1999) including most habitats typical of the sandy coast in National seashores and parks extending southward from Massachusetts to Florida. In 1995, CACO was selected by the National Park Service (NPS) as a prototype park typifying the Atlantic and Gulf Coast biogeographic region for long-term coastal ecosystem monitoring. The U.S. Geological Survey (USGS) is currently (2007) assisting the NPS in the development of protocols for a Long-Term Coastal Ecosystem Monitoring Program at the CACO in Massachusetts. The overall purpose of the monitoring program is to characterize both natural and human-induced change in the biological resources of the CACO, over a time scale of decades, in the context of a changing global ecosystem.

Open-File Report

Arctic Refuge coastal plain terrestrial wildlife research summaries

In 1980, when the U.S. Congress enacted the Alaska National Interest Lands Conservation Act (ANILCA), it also mandated a study of the coastal plain of the Arctic National Wildlife Refuge. Section 1002 of ANILCA stated that a comprehensive inventory of fish and wildlife resources would be conducted on 1.5 million acres of the Arctic Refuge coastal plain (1002 Area). Potential petroleum reserves in the 1002 Area were also to be evaluated from surface geological studies and seismic exploration surveys. Results of these studies and recommendations for future management of the Arctic Refuge coastal plain were to be prepared in a report to Congress. In 1987, the Department of the Interior published the Arctic National Wildlife Refuge, Alaska, Coastal Plain Resource Assessment - Report and Recommendations to the Congress of the United States and Final Environmental Impact Statement. This report to Congress identified the potential for oil and gas production (updated* most recently by the U.S. Geological Survey in 2001), described the biological resources, and evaluated the potential adverse effects to fish and wildlife resources. The 1987 report analyzed the potential environmental consequences of five management alternatives for the coastal plain, ranging from wilderness designation to opening the entire area to lease for oil and gas developement. The report's summary recommended opening the 1002 Area to an orderly oil and gas leasing program, but cautioned that adverse effects to some wildlife populations were possible. Congress did not act on this recommendation nor any other alternative for the 1002 Area, and scientists continued studies of key wildlife species and habitats on the coastal plain of the Arctic Refuge and surrounding areas. This report contains updated summaries of those scientific investigations of caribou, muskoxen, predators (grizzly bears, wolves, golden eagles), polar bears, snow geese, and their wildlife habitats. Contributions to this report were made by scientists affiliated with the U.S. Geological Survey; U.S. Fish and Wildlife Service; Alaska Department of Fish and Game; University of Alaska-Fairbanks; Canadian Wildlife Service; Yukon Department of Renewable Resources; and the Northwest Territories Department of Resources, Wildlife, and Economic Development. Sections of the report presenting new information on caribou and forage plants were peer-reviewed by three independent, non-affiliated scientists. The remaining sections summarize previously published peer-reviewed scientific papers and were reviewed by a single independent scientist. The U.S. Geological Survey and the U.S. Fish and Wildlife Service collaborated in the publication of this report.

Alaska, Northwest Territories, Yukon Territory

Open hydrology courseware using the United States Geological Survey’s National Water Census Data Portal

The U.S. Geological Survey (USGS) is the primary U.S. Government agency for water data collection and dissemination. In this role, the USGS has recently created and deployed a National Water Census Data Portal (NWC-DP) which provides access to streamflow, evapotransporation, precipitation, aquatic biology and other data at the national level. Recognizing the value of these data sets for hydrologic science education, this paper presents an effort to bridge the gap between pencil–and-paper-based hydrology curriculum and the USGS NWC-DP resource. Specifically, we have developed an R package, National Water Census Education (NWCEd), and five associated laboratory exercises that integrate R- and web-services-based access to the NWC-DP data sets. Using custom functions built into the NWCEd, students are able to access unprecedented amounts of hydrologic data from the NWC-DP, which can be applied to current hydrology curriculum and analyzed using NWCEd and a number of other open-source R tools.

Open Water Journal

Ecological benefits of integrative weed management of Melaleuca quinquenervia in Big Cypress National Preserve

The southern tip of North America coalesces into one of the world’s largest freshwater wetlands, the Everglades, Florida, USA. Though this region is much like an island, home to high biodiversity and endemism, it is also the site of a century of development and associated landscape-scale species invasions. Melaleuca quinquenervia (hereafter melaleuca), a tree native to tropical Australia, was planted extensively throughout south Florida as street trees, levee stabilizers, and later to reduce standing water in marshy areas. Through extensive cooperation with the United States Department of Agriculture’s Australian Biological Control Laboratory, several biological control agents were released, three of which later successfully established. Herein we examine evidence that plant community shifts determined from vegetation surveys and remotely sensed images reflect changes from melaleuca-dominated wetlands (before management) to native communities (after management). Melaleuca-dominated community types decreased from 1990 to 2020 by more than 99%. Vegetation surveys also reflect an increase in cypress wetlands, pinelands, and open water wetlands, all of which were dominated by melaleuca in previous decades. We also found the normalized difference vegetation index (NDVI) increased in melaleuca-invaded wetlands during peak infestations but decreased again after communities recovered to sawgrass-dominated wetlands. These responses are concomitant with the development of integrative management techniques for melaleuca that include mechanical, chemical, and biological control. Our results confirm previous findings that biological control likely augments conventional management methods by limiting recovery of invasive species.

Florida

Science and management of Rocky Mountain grizzly bears

The science and management of grizzly bears ( Ursus arctos horribilis ) in the Rocky Mountains of North America have spawned considerable conflict and controversy. Much of this can be attributed to divergent public values, but the narrow perceptions and incomplete and fragmented problem definitions of those involved have exacerbated an inherently difficult situation. We present a conceptual model that extends the traditional description of the grizzly bear conservation system to include facets of the human domain such as the behavior of managers, elected officials, and the public. The model focuses on human-caused mortality, the key determinant of grizzly bear population growth in this region and the interactions and feedback loops among humans that have a major potential influence on bear mortality. We also briefly evaluate existing information and technical methods relevant to understanding this complex human-biophysical system. We observe not only that the extant knowledge is insufficient for prediction (and in some cases for description), but also that traditional positivistic science alone is not adequate for dealing with the problems of grizzly bear conservation. We recommend changes in science and management that could improve learning and responsiveness among the involved individuals and organizations, clarify some existing uncertainty, and thereby increase the effectiveness of grizzly bear conservation and management. Although adaptive management is a promising approach, we point out some key—as yet unfulfilled—contingencies for implementation of a method such as this one that relies upon social processes and structures that promote open learning and flexibility in all facets of the policy process.

Colorado, Idaho, Montana, New Mexico, Utah, Washin

Interpolation of reconnaissance multibeam and single-beam bathymetry offshore of Milford, Connecticut

This report releases echosounder data from the northern part of the National Oceanic and Atmospheric Administration (NOAA) hydrographic survey H11044 in Long Island Sound, off Milford, Connecticut. The data have been interpolated and regridded into a complete-coverage data set and image of the sea floor. The grid produced as a result of the interpolation is at 10-m resolution. These data extend an already published set of reprocessed bathymetric data from the southern part of survey H11044. In Long Island Sound, the U.S. Geological Survey, in cooperation with NOAA and the Connecticut Department of Environmental Protection, is producing detailed maps of the sea floor. Part of the current phase of research involves studies of sea-floor topography and its effect on the distributions of sedimentary environments and benthic habitats. This data set provides a more continuous perspective of the sea floor than was previously available. It helps to define topographic variability and benthic-habitat diversity for the area and improves our understanding of oceanographic processes controlling the distribution of sediments and benthic habitats. Inasmuch as precise information on environmental setting is important for selecting sampling sites and accurately interpreting point measurements, this data set can also serve as a base map for subsequent sedimentological, geochemical, and biological research.

Connecticut

Sea-Floor geology and character of Eastern Rhode Island Sound West of Gay Head, Massachusetts

Gridded multibeam bathymetry covers approximately 102 square kilometers of sea floor in eastern Rhode Island Sound west of Gay Head, Massachusetts. Although originally collected for charting purposes during National Oceanic and Atmospheric Administration hydrographic survey H11922, these acoustic data and the sea-floor stations subsequently occupied to verify them (1) show the composition and terrain of the seabed, (2) provide information on sediment transport and benthic habitat, and (3) are part of an expanding series of studies that provide a fundamental framework for research and management activities (for example, windfarms and fisheries) along the Massachusetts inner continental shelf. Most of the sea floor in the study area has an undulating to faintly rippled appearance and is composed of bioturbated muddy sand, reflecting processes associated with sediment sorting and reworking. Shallower areas are composed of rippled sand and, where small fields of megaripples are present, indicate sedimentary environments characterized by processes associated with coarse bedload transport. Boulders and gravel were found on the floors of scour depressions and on top of an isolated bathymetric high where erosion has removed the Holocene marine sediments and exposed the underlying relict lag deposits of Pleistocene drift. The numerous scour depressions, which formed during storm-driven events, result in the juxtaposition of sea-floor areas with contrasting sedimentary environments and distinct gravel, sand, and muddy sand textures. This textural heterogeneity in turn creates a complex patchwork of habitats. Our observations of local variations in community structure suggest that this small-scale textural heterogeneity adds dramatically to the sound-wide benthic biological diversity.

Eastern Rhode Island Sound;West Of Gay Head;Massac

Hydrologic and water-quality data, Guanella Pass area, Colorado, water year 1995

Water quality of streams and lakes in the Guanella Pass area could be affected by the proposed reconstruction of the existing road through the area. During water year 1995 (October 1, 1994, to September 30, 1995), data were collected that provide reconnaissance information about thehydrology, water quality, sediment transport, biology, and bulk atmospheric-deposition in the Guanella Pass study area. Data were collected at 5 stream monitoring stations, 23 synoptic-stream sites, 11 road-runoff sites, 8 ground-water sites, 4 lake/reservoir sites, 2 snow-precipitation sites, 11 biological sampling sites, and 12 bulk atmospheric- deposition sites.

Open-File Report

Selenium in ecosystems within the mountaintop coal mining and valley-fill region of southern West Virginia-assessment and ecosystem-scale modeling

Coal and associated waste rock are among environmental selenium (Se) sources that have the potential to affect reproduction in fish and aquatic birds. Ecosystems of southern West Virginia that are affected by drainage from mountaintop coal mines and valleys filled with waste rock in the Coal, Gauley, and Lower Guyandotte watersheds were assessed during 2010 and 2011. Sampling data from earlier studies in these watersheds (for example, Upper Mud River Reservoir) and other mining-affected watersheds also are included to assess additional hydrologic settings and food webs for comparison. Basin schematics give a comprehensive view of sampled species and Se concentration data specific to location and date. Food-web diagrams document the progression of Se trophic transfer across suspended particulate material, invertebrates, and fish for each site to serve as the basis for developing an ecosystem-scale model to predict Se exposure within the hydrologic conditions and food webs of southern West Virginia. This approach integrates a site-specific predator’s dietary exposure pathway into modeling to ensure an adequate link to Se toxicity and, thus, to species vulnerability. Site-specific fish abundance and richness data in streams documented various species of chub, shiner, dace, darters, bass, minnow, sunfish, sucker, catfish, and central stoneroller (Campostoma anomalum), mottled sculpin (Cottus bairdii), and least brook lamprey (Lampetra aepyptera). However, Se assessment species for streams, and hence, model species for streams, were limited to creek chub (Semotilus atromaculatus) and central stoneroller. Both of these species of fish are generally considered to have a high tolerance for environmental stress based on traditional comparative fish community assessment, with creek chub being present at all sites. Aquatic insects (mayfly, caddisfly, stonefly, dobsonfly, chironomid) were the main invertebrates sampled in streams. Collection of suspended particulate material acted as an integrator of organic-rich, fine-grained biomass present in streams. The base-case food web modeled for streams was suspended particulate material to aquatic insect to creek chub, with comparative modeling of a direct particulate-to-stoneroller food web. Model species for a reservoir setting were based on an earlier study of bluegill sunfish (Lepomis macrochirus), green sunfish (Lepomis cyanellus), and largemouth bass (Micropterus salmoides). Several reservoir food webs were considered based on a variety of invertebrates (insect, snail, clam). For stream and reservoir settings, predicted Se concentrations in exposure scenarios showed a high degree of correlation (r 2 = 0.91 for invertebrates and 0.75 for fish) with field observations of Se concentrations when modeling was initiated from suspended-particulate-material Se concentrations and model transfer parameters defined previously in the literature were used. These strong correlations validate the derived site-specific model and establish sufficient confidence that the predictions from the developed model can be quantitatively applied to the ecosystems in southern West Virginia. An application of modeling used a metric describing the partitioning of Se between particulate material and dissolved phases (K d ) to allow determination of a dissolved Se concentration that would be necessary to attain a site-specific Se fish body burden. The operationally defined K d quantifies the complex process of transformation at the base of a food web on a site-specific basis. The magnitude of this metric is known to vary with such factors as Se speciation, particulate-material type, and hydrology. This application (1) ties dissolved Se concentrations to fish tissue concentrations; (2) allows consideration of different choices for intervening site-specific exposure steps that set Se bioaccumulation, partitioning, and bioavailability; and (3) generates implications for management decisions that define protection through different regulatory pathways and guidelines. The range of model outcomes accounts for critical sources of variability and establishes whether site and food-web characterization were adequate to represent the dynamics of the system with certainty. This is especially true in terms of particulate-material phases at the base of the food web and utilization of K d in different hydrologic settings. For streams, a range of field-derived K d ds were applied to food-web exposure scenarios within a framework of locational and hydrologic variables (area of stream basin; stream gradient and discharge) that may affect the magnitude of K d . Overlaying even a coarse temporal scale that acknowledges variability in stream dissolved Se and Se speciation, such as through seasonal derivation of K d , can substantially narrow model uncertainty. Modeling that constrains the place and time of greatest ecosystem Se sensitivity within a specified food web gives insight into Se risk and identifies controlling management alternatives within a watershed or stream basin. If there is a range of hydrologic settings, specificity is needed to establish a hierarchy of in-stream and off-stream habitats for a watershed approach that takes into account Se-enriched water moving through different K d and food web environments. If there is a range of predator vulnerabilities (measured as a combination of food-web Se biodynamics and response in Se toxicity tests) within the site-specific community of fish species to be protected, then choice of fish species is critical to protection because it determines the food web and, hence, the magnitude of biotransfer through which Se is modeled. Whether creek chub is representative of the vulnerability to Se of all fish species encountered within the study-site ecosystems will require additional species-specific data and analysis. A range of site-specific scenarios illustrated here set model outcomes, but the final quantitative evaluation of alternatives and their implications will be those generated through choices and guidance formulated by state and other agencies in their decisionmaking processes. Proposed additions and refinements to the ecosystem-scale site-specific approach developed here include consideration of: measurement of temporally matched pairs of dissolved and suspended-particulate-material Se concentrations across a broader range of stream sites to expand the stream K d database and to test the representativeness of a suspended-particulate-material sample within a stream; characterization of different phases of particulate material across seasons to better define the base of the food web and connect to invertebrate feeding; refinement of model assumptions concerning dietary preferences and composition for fish to develop additional trophic transfer factors (TTFs) (for example, calculation of TTFinvertebrate composite for mixed diets); expansion of modeling of fish species and their food webs to include Se-vulnerable species; temporal characterization of a predator’s life cycle and habitat use as additional model layers to integrate with Se biodynamics in streams; investigation of the effect of stream gradient on K d based on a finer scale than presented here in terms of such variables as residence time, watershed dilution, and physical habitat attributes (for example, amount of ponding versus run or riffle within a stream); and linkage to discharge through use of stream gaging to record variability and enable model organization within water-year types and discharge seasons. Investigating the presence and variability of prey and predator species in demographically open systems such as streams also is key to model outcomes given the overall environmental stressors (for example, general landscape change, food-web disruption, recolonization potential) imposed on the composition of biological communities in coal mining and valley-fill affected watersheds

West Virginia

An overview of raptor conservation in Latin America

Prior to the last decade, biological studies of raptorial birds in Latin America were almost nonexistent. For many species little more was known than their general range and habitat type. The last few years have seen the opening of a door to what will surely be a flood of scientific investigations. Ultimately, the survival of raptor communities in Latin America depends not only on research but also on several other equally significant conservation efforts. These typically appear in the following order: first, appropriate legislation must be enacted and enforced to provide legal protection; second, the public must be educated concerning the value of wildlife; third, substantial blocks of favourable habitat must be identified and preserved; fourth, economic incentives must be generated so that the local human populations actually benefit from the preservation of vulnerable wildlife and natural habitats; and finally, the long-term success of all of these efforts in each nation depends on the attainment of political, economic and social stability.

Birds of Prey Bulletin

Prioritizing removal of dams for passage of diadromous fishes on a major river system

Native diadromous fishes have been extirpated from much of the Susquehanna River system for nearly a century. Recent restoration efforts have focused on removal of dams, but there are hundreds of dams and presently there is no biologically based system to assist in prioritizing their removal. We present a new method that uses existing habitat suitability index models (HSI) for American shad Alosa sapidissima, alewife A. pseudoharengus, blueback herring A. aestivalis, and American eel Anguilla rostrata to prioritize the removal of non-hydropower dams within the Susquehanna River system. We ranked HSI scores for each of the four species, association between a landscape-scale factor and HSIs, length of river opened by removing a dam, and distance from the mouth at Chesapeake Bay for each dam and then calculated a mean rank prioritization for dam removal by averaging the ranks for the seven criteria. This prioritization method is resistant to outliers, is not strongly affected by somewhat arbitrary decisions on metrics included in the analysis, and provides a biologically based prioritization for dam removal that can be easily amended to include other metrics or adapted to other river systems and that complements other social and economic considerations that must be included in decisions to remove dams.

River Research and Applications

Comparative olfactory and behavioral response of grass carp ( Ctenopharyngodon idella ), bighead carp ( Hypophthalmichthys nobilis ), silver carp ( H. molitrix ) and black carp ( Mylopharyngodon piceus ) to chemical stimuli

Grass carp ( Ctenopharyngodon idella ), bighead carp ( Hypophthalmichthys nobilis ), silver carp (H. molitrix), and black carp ( Mylopharyngodon piceus ), collectively “invasive carp,” represent an ongoing management problem in the Mississippi and Missouri River basins of North America. Development of strategies to control their populations are also ongoing. As a follow-up to previous research, we tested two amino acids and an amino acid-based commercial feeding stimulant as olfactory stimulants that may attract or repel these species. We employed a two-pronged approach to test how invasive carp respond to the olfactory stimulants, using an electro-olfactogram (EOG) to measure olfactory response and a tank with a stimulant in one half to test behavioral response. Consistent with previous research, we found grass carp had a higher magnitude of EOG response to stimulants compared to bighead and, marginally, silver carp. Bighead, silver, and black carp did not differ from each other in EOG response. Grass carp produced significantly greater lysine and a marginally greater alanine EOG response than bighead and silver carp and significantly greater commercial feeding stimulant response than bighead carp. Black carp had marginally greater lysine response than bighead carp. In the behavioral tests, grass carp generally avoided the stimuli tested, while bighead carp were generally attracted to stimuli. Neither black nor silver carp showed a clear attraction or avoidance toward the stimuli tested. To further evaluate these solutions for management applications additional testing in ponds or open water may be necessary.

Management of Biological Invasions

Spatially explicit decision support for selecting translocation areas for Mojave desert tortoises

Spatially explicit decision support systems are assuming an increasing role in natural resource and conservation management. In order for these systems to be successful, however, they must address real-world management problems with input from both the scientific and management communities. The National Training Center at Fort Irwin, California, has expanded its training area, encroaching U.S. Fish and Wildlife Service critical habitat set aside for the Mojave desert tortoise ( Gopherus agassizii ), a federally threatened species. Of all the mitigation measures proposed to offset expansion, the most challenging to implement was the selection of areas most feasible for tortoise translocation. We developed an objective, open, scientifically defensible spatially explicit decision support system to evaluate translocation potential within the Western Mojave Recovery Unit for tortoise populations under imminent threat from military expansion. Using up to a total of 10 biological, anthropogenic, and/or logistical criteria, seven alternative translocation scenarios were developed. The final translocation model was a consensus model between the seven scenarios. Within the final model, six potential translocation areas were identified.

Biodiversity and Conservation