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USGS2005

Simulation of flow and sediment mobility using a multidimensional flow model for the White Sturgeon critical-habitat reach, Kootenai River near Bonners Ferry, Idaho

In 1994, the Kootenai River white sturgeon (Acipenser transmontanus) was listed as an Endangered Species as a direct result of two related observations. First, biologists observed that the white sturgeon population in the Kootenai River was declining. Second, they observed a decline in recruitment of juvenile sturgeon beginning in the 1950s with an almost total absence of recruitment since 1974, following the closure of Libby Dam in 1972. This second observation was attributed to changes in spawning and (or) rearing habitat resulting from alterations in the physical habitat, including flow regime, sediment-transport regime, and bed morphology of the river. The Kootenai River White Sturgeon Recovery Team was established to find and implement ways to improve spawning and rearing habitat used by white sturgeon. They identified the need to develop and apply a multidimensional flow model to certain reaches of the river to quantify physical habitat in a spatially distributed manner. The U.S. Geological Survey has addressed these needs by developing, calibrating, and validating a multidimensional flow model used to simulate streamflow and sediment mobility in the white sturgeon critical-habitat reach of the Kootenai River. This report describes the model and limitations, presents the results of a few simple simulations, and demonstrates how the model can be used to link physical characteristics of streamflow to biological or other habitat data. This study was conducted in cooperation with the Kootenai Tribe of Idaho along a 23-kilometer reach of the Kootenai River, including the white sturgeon spawning reach near Bonners Ferry, Idaho that is about 108 to 131 kilometers below Libby Dam. U.S. Geological Survey's MultiDimensional Surface-Water Modeling System was used to construct a flow model for the critical-habitat reach of the Kootenai River white sturgeon, between river kilometers 228.4 and 245.9. Given streamflow, bed roughness, and downstream water-surface elevation, the model computes the velocity field, water-surface elevations, and boundary shear stress throughout the modeled reach. The 17.5 kilometer model reach was subdivided into two segments on the basis of predominant grain size: a straight reach with a sand, gravel, and cobble substrate located between the upstream model boundary at river kilometer 245.9 and the upstream end of Ambush Rock at river kilometer 244.6, and a meandering reach with a predominately sand substrate located between upstream end of Ambush Rock and the downstream model boundary at river kilometer 228.4. Model cell size in the x and y (horizontal) dimensions is 5 meters by 5 meters along the computational grid centerline with 15 nodes in the z (vertical) dimension. The model was calibrated to historical streamflows evenly distributed between 141.6 and 2,548.9 cubic meters per second. The model was validated by comparing simulated velocities with velocities measured at 15 cross sections during steady streamflow. These 15 cross sections were each measured multiple (7-13) times to obtain velocities suitable for comparison to the model results. Comparison of modeled and measured velocities suggests that the model does a good job of reproducing flow patterns in the river, although some discrepancies were noted. The model was used to simulate water-surface elevation, depth, velocity, bed shear stress, and sediment mobility for Kootenai River streamflows of 170, 566, 1,130, 1,700, and 2,270 cubic meters per second (6,000, 20,000, 40,000, 60,000, and 80,000 cubic feet per second). The three lowest streamflow simulations represent a range of typical river conditions before and since the construction of Libby Dam, and the highest streamflow simulation (2,270 cubic meters per second) is approximately equal to the annual median peak streamflow prior to emplacement of Libby Dam in 1972. Streamflow greater than 566 cubic meters per second were incrementally increased by 570 cubic meters per second. For each

Scientific Investigations Report↗

USGS2006

Estimated flood-inundation mapping for the Lower Blue River in Kansas City, Missouri, 2003-2005

The U.S. Geological Survey, in cooperation with the city of Kansas City, Missouri, began a study in 2003 of the lower Blue River in Kansas City, Missouri, from Gregory Boulevard to the mouth at the Missouri River to determine the estimated extent of flood inundation in the Blue River valley from flooding on the lower Blue River and from Missouri River backwater. Much of the lower Blue River flood plain is covered by industrial development. Rapid development in the upper end of the watershed has increased the volume of runoff, and thus the discharge of flood events for the Blue River. Modifications to the channel of the Blue River began in late 1983 in response to the need for flood control. By 2004, the channel had been widened and straightened from the mouth to immediately downstream from Blue Parkway to convey a 30-year flood. A two-dimensional depth-averaged flow model was used to simulate flooding within a 2-mile study reach of the Blue River between 63rd Street and Blue Parkway. Hydraulic simulation of the study reach provided information for the design and performance of proposed hydraulic structures and channel improvements and for the production of estimated flood-inundation maps and maps representing an areal distribution of water velocity, both magnitude and direction. Flood profiles of the Blue River were developed between Gregory Boulevard and 63rd Street from stage elevations calculated from high water marks from the flood of May 19, 2004; between 63rd Street and Blue Parkway from two-dimensional hydraulic modeling conducted for this study; and between Blue Parkway and the mouth from an existing one-dimensional hydraulic model by the U.S. Army Corps of Engineers. Twelve inundation maps were produced at 2-foot intervals for Blue Parkway stage elevations from 750 to 772 feet. Each map is associated with National Weather Service flood-peak forecast locations at 63rd Street, Blue Parkway, Stadium Drive, U.S. Highway 40, 12th Street, and the Missouri River at the Hannibal railroad bridge in Kansas City. The National Weather Service issues peak-stage forecasts for these locations during times of flooding. Missouri River backwater inundation profiles were developed using interpolated Missouri River stage elevations at the mouth of the Blue River. Twelve backwater-inundation maps were produced at 2-foot intervals for the mouth of the Blue River from 730.9 to 752.9. To provide public access to the information presented in this report, a World Wide Web site (http://mo.water.usgs.gov/indep/kelly/blueriver/index.htm) was created that displays the results of two-dimensional modeling between 63rd Street and Blue Parkway, estimated flood-inundation maps, estimated backwater-inundation maps, and the latest gage heights and National Weather Service stage forecast for each forecast location within the study area. In addition, the full text of this report, all tables, and all plates are available for download at http://pubs.water.usgs.gov/sir2006-5089.

Missouri↗

USGS2006

Fish communities and related environmental conditions of the lower Boise River, southwestern Idaho, 1974-2004

Within the last century, the lower Boise River has been transformed from a meandering, braided, gravel-bed river that supported large runs of salmon to a channelized, regulated, urban river that provides flood control and irrigation water to more than 1,200 square miles of land. An understanding of the current status of the river's fish communities and related environmental conditions is important to support the ongoing management of the Boise River. Therefore, fish community data from the U.S. Geological Survey and the Idaho Department of Fish and Game collected since 1974 were analyzed to describe the status of fish communities in the lower Boise River. Each set of data was collected to address different study objectives, but is combined here to provide an overall distribution of fish in the lower Boise River over the last 30 years. Twenty-two species of fish in 7 families have been identified in the lower Boise River-3 salmonidae, trout and whitefish; 2 cottidae, sculpins; 3 catostomidae, suckers; 7 cyprinidae, minnows; 4 centrarchidae, sunfish; 2 ictaluridae, catfish; and 1 cobitidae, loach. Analysis of fish community data using an Index of Biotic Integrity (IBI) for Northwest rivers shows a decrease in the biotic integrity in a downstream direction, with the lowest IBI near the mouth of the Boise River. The number of tolerant and introduced fish were greater in the lower reaches of the river. Changes in land use, habitat, and water quality, as well as regulated streamflow have affected the lower Boise River fish community. IBI scores were negatively correlated with maximum instantaneous water temperature, specific conductance, and suspended sediment; as well as the basin land-use metrics, area of developed land, impervious surface area, and the number of major diversions upstream of a site. Fish communities in the upstream reaches were dominated by piscivorous fish, whereas the downstream reaches were dominated by tolerant, omnivorous fish. The percentage of sculpin in the river decreased in a downstream direction, and sculpin disappear completely at sites downstream of Glenwood Bridge. The sculpin population increased downstream of the Lander wastewater-treatment facility within the last decade, possibly as a result of improved wastewater treatment. The condition of the mountain whitefish (Prosopium williamsoni) throughout the lower Boise River was good and was similar both to the condition of mountain whitefish from least-disturbed rivers in southern Idaho and to the North American standard weight for mountain whitefish.

Scientific Investigations Report↗

USGS2007

Hydrology, Water Quality, and Surface- and Ground-Water Interactions in the Upper Hillsborough River Watershed, West-Central Florida

A study of the Hillsborough River watershed was conducted between October 1999 through September 2003 to characterize the hydrology, water quality, and interaction between the surface and ground water in the highly karstic uppermost part of the watershed. Information such as locations of ground-water recharge and discharge, depth of the flow system interacting with the stream, and water quality in the watershed can aid in prudent water-management decisions. The upper Hillsborough River watershed covers a 220-square-mile area upstream from Hillsborough River State Park where the watershed is relatively undeveloped. The watershed contains a second order magnitude spring, many karst features, poorly drained swamps, marshes, upland flatwoods, and ridge areas. The upper Hillsborough River watershed is subdivided into two major subbasins, namely, the upper Hillsborough River subbasin, and the Blackwater Creek subbasin. The Blackwater Creek subbasin includes the Itchepackesassa Creek subbasin, which in turn includes the East Canal subbasin. The upper Hillsborough River watershed is underlain by thick sequences of carbonate rock that are covered by thin surficial deposits of unconsolidated sand and sandy clay. The clay layer is breached in many places because of the karst nature of the underlying limestone, and the highly variable degree of confinement between the Upper Floridan and surficial aquifers throughout the watershed. Potentiometric-surface maps indicate good hydraulic connection between the Upper Floridan aquifer and the Hillsborough River, and a poorer connection with Blackwater and Itchepackesassa Creeks. Similar water level elevations and fluctuations in the Upper Floridan and surficial aquifers at paired wells also indicate good hydraulic connection. Calcium was the dominant ion in ground water from all wells sampled in the watershed. Nitrate concentrations were near or below the detection limit in all except two wells that may have been affected by fertilizer or animal waste. Wells at the Blackwater Creek and Hillsborough River at State Road 39 transects showed little seasonal variation in dissolved organic carbon. Dissolved organic carbon concentrations, however, were greater during the wet season than during the dry season at the Hillsborough River Tract transect, indicating some influence from surface-water sources. During dry periods, streamflow in the upper Hillsborough River was sustained by ground water from the underlying Upper Floridan aquifer. During wet periods, streamflow had additional contributions from runoff, and release of water from extensive riverine wetlands, and by overflow from the Withlacoochee River. In contrast, streamflow in Blackwater and Itchepackesassa Creeks was less constant, with many no-flow days occurring during dry periods. During wet season storm events, streamflow peaks occur more rapidly because there is greater confinement between the surficial deposits and the Upper Floridan aquifer, and these creeks have been highly channelized, leaving less of the adjacent wetlands intact. During dry periods, Blackwater Creek is dry upstream from its confluence with Itchepackesassa Creek, and all downstream flow is from Itchepackesassa Creek. Much of the dry season flow in Itchepackesassa Creek originates from a treated wastewater effluent outfall located on East Canal. Long-term streamflow at the Hillsborough River and Blackwater Creek stations was greater than the discharge observed during the study period. Water quality in the upper Hillsborough River is influenced by ground-water discharge. The chemical composition of water from Blackwater Creek, Itchepackesassa Creek, and East Canal was more variable because there was less ground-water discharge to these creeks than to the upper Hillsborough River, and because of the influence of wastewater effluent. Strontium isotope data indicated that the source of the water at all Hillsborough River sites during the dry season was the Oli

Scientific Investigations Report↗

USGS2009

Geohydrologic Investigations and Landscape Characteristics of Areas Contributing Water to Springs, the Current River, and Jacks Fork, Ozark National Scenic Riverways, Missouri

The Ozark National Scenic Riverways (ONSR) is a narrow corridor that stretches for approximately 134 miles along the Current River and Jacks Fork in southern Missouri. Most of the water flowing in the Current River and Jacks Fork is discharged to the rivers from springs within the ONSR, and most of the recharge area of these springs is outside the ONSR. This report describes geohydrologic investigations and landscape characteristics of areas contributing water to springs and the Current River and Jacks Fork in the ONSR. The potentiometric-surface map of the study area for 2000-07 shows that the groundwater divide extends beyond the surface-water divide in some places, notably along Logan Creek and the northeastern part of the study area, indicating interbasin transfer of groundwater between surface-water basins. A low hydraulic gradient occurs in much of the upland area west of the Current River associated with areas of high sinkhole density, which indicates the presence of a network of subsurface karst conduits. The results of a low base-flow seepage run indicate that most of the discharge in the Current River and Jacks Fork was from identified springs, and a smaller amount was from tributaries whose discharge probably originated as spring discharge, or from springs or diffuse groundwater discharge in the streambed. Results of a temperature profile conducted on an 85-mile reach of the Current River indicate that the lowest average temperatures were within or downstream from inflows of springs. A mass-balance on heat calculation of the discharge of Bass Rock Spring, a previously undescribed spring, resulted in an estimated discharge of 34.1 cubic feet per second (ft3/s), making it the sixth largest spring in the Current River Basin. The 13 springs in the study area for which recharge areas have been estimated accounted for 82 percent (867 ft3/s of 1,060 ft3/s) of the discharge of the Current River at Big Spring during the 2006 seepage run. Including discharge from other springs, the cumulative discharge from springs was over 90 percent of the river discharge at most of the spring locations, and was 92 percent at Big Spring and at the lower end of the ONSR. The discharge from the 1.9-mile long Pulltite Springs Complex measured in the 2006 seepage run was 88 ft3/s. Most of this (77 ft3/s) was from the first approximately 0.25 mi of the Pulltite Springs Complex. It has been estimated that the annual mean discharge from the Current River Springs Complex is 125 ft3/s, based on an apparent discharge of 50 ft3/s during a 1966 U.S. Geological Survey seepage run. However, a reinterpretation of the 1966 seepage run data shows that the discharge from the Current River Springs Complex instead was about 12.6 ft3/s, and the annual mean discharge was estimated to be 32 ft3/s, substantially less than 125 ft3/s. The 2006 seepage run showed a gain of only 12 ft3/s from the combined Round Spring and Current River Springs Complex from the mouth of Sinking Creek to 0.7 mi upstream from Root Hollow. The 2006 temperature profile measurements did not indicate any influx of spring discharge throughout the length of the Current River Springs Complex. The spring recharge areas with the largest number of identified sinkholes are Big Spring, Alley Spring, and Welch Spring. The spring recharge areas with the largest number of sinkholes per square mile of recharge area are Alley Spring, Blue Spring (Jacks Fork), Welch Spring, and Round Spring and the Current River Springs Complex. Using the currently known locations of losing streams, the Big Spring recharge area has the largest number of miles of losing stream, and the Bass Rock Spring recharge area has the largest number of miles of losing stream per unit recharge area. The spring recharge areas with the most open land and the least forested land per unit recharge area are Blue Spring (Jacks Fork), Welch Spring, Montauk Springs, and Alley Spring. The spring recharge areas with the least amount

Scientific Investigations Report↗

USGS2010

Development of a channel classification to evaluate potential for cottonwood restoration, lower segments of the Middle Missouri River, South Dakota and Nebraska

This report documents development of a spatially explicit river and flood-plain classification to evaluate potential for cottonwood restoration along the Sharpe and Fort Randall segments of the Middle Missouri River. This project involved evaluating existing topographic, water-surface elevation, and soils data to determine if they were sufficient to create a classification similar to the Land Capability Potential Index (LCPI) developed by Jacobson and others (U.S. Geological Survey Scientific Investigations Report 2007–5256) and developing a geomorphically based classification to apply to evaluating restoration potential. Existing topographic, water-surface elevation, and soils data for the Middle Missouri River were not sufficient to replicate the LCPI. The 1/3-arc-second National Elevation Dataset delineated most of the topographic complexity and produced cumulative frequency distributions similar to a high-resolution 5-meter topographic dataset developed for the Lower Missouri River. However, lack of bathymetry in the National Elevation Dataset produces a potentially critical bias in evaluation of frequently flooded surfaces close to the river. High-resolution soils data alone were insufficient to replace the information content of the LCPI. In test reaches in the Lower Missouri River, soil drainage classes from the Soil Survey Geographic Database database correctly classified 0.8–98.9 percent of the flood-plain area at or below the 5-year return interval flood stage depending on state of channel incision; on average for river miles 423–811, soil drainage class correctly classified only 30.2 percent of the flood-plain area at or below the 5-year return interval flood stage. Lack of congruence between soil characteristics and present-day hydrology results from relatively rapid incision and aggradation of segments of the Missouri River resulting from impoundments and engineering. The most sparsely available data in the Middle Missouri River were water-surface elevations. Whereas hydraulically modeled water-surface elevations were available at 1.6-kilometer intervals in the Lower Missouri River, water-surface elevations in the Middle Missouri River had to be interpolated between streamflow-gaging stations spaced 3–116 kilometers. Lack of high-resolution water-surface elevation data precludes development of LCPI-like classification maps. An hierarchical river classification framework is proposed to provide structure for a multiscale river classification. The segment-scale classification presented in this report is deductive and based on presumed effects of dams, significant tributaries, and geological (and engineered) channel constraints. An inductive reach-scale classification, nested within the segment scale, is based on multivariate statistical clustering of geomorphic data collected at 500-meter intervals along the river. Cluster-based classifications delineate reaches of the river with similar channel and flood-plain geomorphology, and presumably, similar geomorphic and hydrologic processes. The dominant variables in the clustering process were channel width (Fort Randall) and valley width (Sharpe), followed by braiding index (both segments). Clusters with multithread and highly sinuous channels are likely to be associated with dynamic channel migration and deposition of fresh, bare sediment conducive to natural cottonwood germination. However, restoration potential within these reaches is likely to be mitigated by interaction of cottonwood life stages with the highly altered flow regime.

Scientific Investigations Report↗

USGS2012

Groundwater quality in the Columbia Plateau, Snake River Plain, and Oahu basaltic-rock and basin-fill aquifers in the Northwestern United States and Hawaii, 1992-2010

This assessment of groundwater-quality conditions of the Columbia Plateau, Snake River Plain, and Oahu for the period 1992–2010 is part of the U.S. Geological Survey’s National Water Quality Assessment (NAWQA) program. It shows where, when, why, and how specific water-quality conditions occur in groundwater of the three study areas and yields science-based implications for assessing and managing the quality of these water resources. The primary aquifers in the Columbia Plateau, Snake River Plain, and Oahu are mostly composed of fractured basalt, which makes their hydrology and geochemistry similar. In spite of the hydrogeologic similarities, there are climatic differences that affect the agricultural practices overlying the aquifers, which in turn affect the groundwater quality. Understanding groundwater-quality conditions and the natural and human factors that control groundwater quality is important because of the implications to human health, the sustainability of rural agricultural economies, and the substantial costs associated with land and water management, conservation, and regulation. The principal regional aquifers of the Columbia Plateau, Snake River Plain, and Oahu are highly vulnerable to contamination by chemicals applied at the land surface; essentially, they are as vulnerable as many shallow surficial aquifers elsewhere. The permeable and largely unconfined character of principal aquifers in the Columbia Plateau, Snake River Plain, and Oahu allow water and chemicals to infiltrate to the water table despite depths to water commonly in the hundreds of feet. The aquifers are essentially unconfined over large areas, having few extensive clay layers to impede infiltration through permeable volcanic rock and alluvial sediments. Agriculture is intensive in all three study areas, and heavy irrigation has imposed large artificial flows of irrigation recharge that rival or exceed natural recharge rates. Fertilizers and pesticides applied at land surface are leached from soil and transported to deep water tables with the infiltrating irrigation recharge, resulting in a layer of degraded water quality overlying better quality regional groundwater beneath. This “irrigation-recharge layer” is best known on Oahu, where it has been studied since the 1960s; however, the extent of nitrate and pesticide contamination in the Columbia Plateau and Snake River Plain indicate that the same situation exists in those areas. Contamination from agricultural and urban activities is present not only at shallow depths in surficial materials of the three areas, but extends regionally in the deep, principal bedrock aquifers that are tapped for drinking water by domestic and public-supply wells. Naturally occurring constituents and nitrate concentrations above human-health benchmarks—Maximum Contaminant Levels (MCLs), and Health-Based Screening Levels (HBSLs)—were more common in the Columbia Plateau and the Snake River Plain than in Oahu. Concentrations of anthropogenic constituents (constituents related to human activities) above human-health benchmarks were more common in Oahu. Naturally occurring contaminants, such as arsenic and radon, may be present in groundwater at concentrations of potential concern for human health in relatively undeveloped settings that otherwise may not be perceived as susceptible to contamination. Even though the median depth to groundwater in Oahu is more than 300 feet, the common occurrence of anthropogenic compounds in groundwater indicates that Oahu has a high susceptibility to contamination. Nitrate concentrations in groundwater were above the national background concentrations of 1 milligram per liter (mg/L) in all three study areas. In the Columbia Plateau, nitrate exceeded the human-health benchmark of 10 mg/L in 20 percent of the wells sampled. In the Snake River Plain, nitrate exceeded the human-health benchmark of 10 mg/L in 3 percent of the wells sampled. Nitrate can persist in groundwater for years and even decades in the oxygen-rich groundwater of the Columbia Plateau and the Snake River Plain, so prudent groundwater protection measures are critical to protect drinking water resources by reducing nitrate leaching from the land surface. Nitrate logistic regression models indicated that areas with a high percentage of land in crops (such as potatoes or sugarcane) and soils with low amounts of organic matter are most likely to have elevated nitrate concentrations in the groundwater. Areas where agricultural activities were absent had much lower probabilities of detecting elevated nitrate concentrations. The Columbia Plateau had a much higher probability of having elevated nitrate concentrations, with most of the land area having greater than a 50 percent probability of elevated nitrate concentrations. Oahu and the Snake River Plain had a much lower probability of having elevated nitrate concentrations because of their lower percentage of agricultural land. Pesticides were detected at many sites in groundwater of the Columbia Plateau, Snake River Plain, and Oahu but generally at low concentrations below human-health benchmarks. Atrazine and its degradate (a compound produced from the breakdown of a parent pesticide), deethylatrazine, were the most commonly detected pesticides in groundwater sampled in the Columbia Plateau and Snake River Plain. Bromacil was the most commonly detected pesticide on Oahu. The other pesticides most commonly detected in the study areas include simazine, hexazinone, metribuzin, diuron, prometon, metolachlor, p,p’ -DDE, dieldrin, 2-4-D, and alachlor. DDE (a degradate of DDT) and dieldrin are still being detected in groundwater despite having been banned for more than 30 years. Codetection of multiple pesticides in water from a single well was common. The widespread occurrence of pesticides in groundwater in the study areas indicates that the groundwater is highly susceptible to pesticide contamination. Some pesticides were detected in groundwater samples from all three study areas, but other pesticides were detected only in samples from Oahu, or only in samples from the Columbia Plateau and Snake River Plain. This is because some pesticides (such as atrazine) are broad-spectrum pesticides that are used on many crops in many different areas of the United States. Other pesticides (such as simazine, metribuzin, and metolachlor) are used on row crops (such as potatoes, barley, and alfalfa) grown in the Columbia Plateau and Snake River Plain, but not on pineapple or sugarcane grown in Oahu. Atrazine logistic-regression models indicate that areas with a high percentage of land in crops (such as potatoes or sugarcane), a low percentage of fallow land, and highly permeable soils with low amounts of organic matter are most likely to have atrazine detected in the groundwater. Areas where agricultural activities were absent had much lower probabilities of atrazine being detected. The Snake River Plain had a much higher probability of atrazine detections, with more than 50 percent of the land area having greater than a 50 percent probability of atrazine contamination. Oahu had a much lower probability of atrazine contamination, with only 24 percent of the land area having greater than a 50 percent probability of atrazine contamination. Oahu and the Columbia Plateau had some of the highest percentages of soil fumigant detections in groundwater in the United States. Soil fumigants are volatile organic compounds (VOCs) used as pesticides, which are applied to soils to reduce populations of plant parasitic nematodes (harmful rootworms), weeds, fungal pathogens, and other soil-borne microorganisms. They are used in Oahu and the Columbia Plateau on crops such as pineapple and potatoes. All three areas (Columbia Plateau, Snake River Plain, and Oahu) had fumigant concentrations exceeding human-health benchmarks for drinking water.

Hawai'i, Idaho, Nevada, Oregon, Utah, Washington, ↗

USGS2013

Characteristics of sediment transport at selected sites along the Missouri River during the high-flow conditions of 2011

During 2011, many tributaries in the Missouri River Basin experienced near record peak streamflow and caused flood damage to many communities along much of the Missouri River from Montana to the confluence with the Mississippi River. The large runoff event in 2011 provided an opportunity to examine characteristics of sediment transport in the Missouri River at high-magnitude streamflow and for a long duration. The purpose of this report is to describe sediment characteristics during the 2011 high-flow conditions at six selected sites on the Missouri River, two in the middle region of the basin between Lake Sakakawea and Lake Oahe in North Dakota, and four downstream from Gavins Point Dam along the Nebraska-South Dakota and Nebraska-Iowa borders. A wider range in suspended-sediment concentration was observed in the middle segment of the Missouri River compared to sites in the lower segment. In the middle segment of the Missouri River, suspended-sediment concentrations increased and peaked as flows increased and started to plateau; however, while flows were still high and steady, suspended-sediment concentrations decreased and suspended-sediment grain sizes coarsened, indicating the decrease possibly was related to fine-sediment supply limitations. Measured bedload transport rates in the lower segment of the Missouri River (sites 3 to 6) were consistently higher than those in the middle segment (sites 1 and 2) during the high-flow conditions in 2011. The median bedload transport rate measured at site 1 was 517 tons per day and at site 2 was 1,500 tons per day. Measured bedload transport rates were highest at site 3 then decreased downstream to site 5, then increased at site 6. The median bedload transport rates were 22,100 tons per day at site 3; 5,640 tons per day at site 4; 3,930 tons per day at site 5; and 8,450 tons per day at site 6. At the two sites in the middle segment of the Missouri River, the greatest bedload was measured during the recession of the streamflow hydrograph. A similar pattern was observed at sites 3–5 in the lower segment of the Missouri River, where the greatest bedload was measured later in the event on the recession of the streamflow hydrograph, although the change in bedload was not as dramatic as observed at the sites in the middle segment of the Missouri River. With the exception of site 3, the total-sediment load on the Missouri River was highest at the beginning of the high-flow event and decreased as streamflow decreased. In the middle segment of the Missouri River, measured total-sediment load ranged from 2,320 to 182,000 tons per day at site 1 and from 3,190 to 279,000 tons per day at site 2. In the lower segment of the Missouri River, measured total-sediment load ranged from 50,600 to 223,000 tons per day at site 4; from 23,500 to 403,000 tons per day at site 5; and from 52,700 to 273,000 tons per day at site 6. The total-sediment load was dominated by suspended sediment at all of the sites measured on the Missouri River in 2011. In general, the percentage of total-sediment load that was bedload increased as the streamflow decreased, although this pattern was more prevalent at sites in the middle segment than those in the lower segment. The suspended-sediment load comprised an average of 93 percent of the total load, with the exception of site 3, where the suspended-sediment load comprised only 72 percent of the total-sediment load.

Missouri River↗

USGS2013

Evaluation of total phosphorus mass balance in the lower Boise River and selected tributaries, southwestern Idaho

he U.S. Geological Survey (USGS), in cooperation with Idaho Department of Environmental Quality, developed spreadsheet mass-balance models for total phosphorus using results from three synoptic sampling periods conducted in the lower Boise River watershed during August and October 2012, and March 2013. The modeling reach spanned 46.4 river miles (RM) along the Boise River from Veteran’s Memorial Parkway in Boise, Idaho (RM 50.2), to Parma, Idaho (RM 3.8). The USGS collected water-quality samples and measured streamflow at 14 main-stem Boise River sites, two Boise River north channel sites, two sites on the Snake River upstream and downstream of its confluence with the Boise River, and 17 tributary and return-flow sites. Additional samples were collected from treated effluent at six wastewater treatment plants and two fish hatcheries. The Idaho Department of Water Resources quantified diversion flows in the modeling reach. Total phosphorus mass-balance models were useful tools for evaluating sources of phosphorus in the Boise River during each sampling period. The timing of synoptic sampling allowed the USGS to evaluate phosphorus inputs to and outputs from the Boise River during irrigation season, shortly after irrigation ended, and soon before irrigation resumed. Results from the synoptic sampling periods showed important differences in surface-water and groundwater distribution and phosphorus loading. In late August 2012, substantial streamflow gains to the Boise River occurred from Middleton (RM 31.4) downstream to Parma (RM 3.8). Mass-balance model results indicated that point and nonpoint sources (including groundwater) contributed phosphorus loads to the Boise River during irrigation season. Groundwater exchange within the Boise River in October 2012 and March 2013 was not as considerable as that measured in August 2012. However, groundwater discharge to agricultural tributaries and drains during non-irrigation season was a large source of discharge and phosphorus in the lower Boise River in October 2012 and March 2013. Model results indicate that point sources represent the largest contribution of phosphorus to the Boise River year round, but that reductions in point and nonpoint source phosphorus loads may be necessary to achieve seasonal total phosphorus concentration targets at Parma (RM 3.8) from May 1 through September 30, as set by the 2004 Snake River-Hells Canyon Total Maximum Daily Load document. The mass-balance models do not account for biological or depositional instream processes, but are useful indicators of locations where appreciable phosphorus uptake or release by aquatic plants may occur.

Idaho↗

USGS2014

Occurrence and transport of nitrogen in the Big Sunflower River, northwestern Mississippi, October 2009-June 2011

The Big Sunflower River Basin, located within the Yazoo River Basin, is subject to large annual inputs of nitrogen from agriculture, atmospheric deposition, and point sources. Understanding how nutrients are transported in, and downstream from, the Big Sunflower River is key to quantifying their eutrophying effects on the Gulf. Recent results from two Spatially Referenced Regressions on Watershed attributes (SPARROW models), which include the Big Sunflower River, indicate minimal losses of nitrogen in stream reaches typical of the main channels of major river systems. If SPARROW assumptions of relatively conservative transport of nitrogen are correct and surface-water losses through the bed of the Big Sunflower River are negligible, then options for managing nutrient loads to the Gulf of Mexico may be limited. Simply put, if every pound of nitrogen entering the Delta is eventually delivered to the Gulf, then the only effective nutrient management option in the Delta is to reduce inputs. If, on the other hand, it can be shown that processes within river channels of the Mississippi Delta act to reduce the mass of nitrogen in transport, other hydrologic approaches may be designed to further limit nitrogen transport. Direct validation of existing SPARROW models for the Delta is a first step in assessing the assumptions underlying those models. In order to characterize spatial and temporal variability of nitrogen in the Big Sunflower River Basin, water samples were collected at four U.S. Geological Survey gaging stations located on the Big Sunflower River between October 1, 2009, and June 30, 2011. Nitrogen concentrations were generally highest at each site during the spring of the 2010 water year and the fall and winter of the 2011 water year. Additionally, the dominant form of nitrogen varied between sites. For example, in samples collected from the most upstream site (Clarksdale), the concentration of organic nitrogen was generally higher than the concentrations of ammonia and nitrate plus nitrite; conversely, at sites farther downstream (that is, at Sunflower and Anguilla), nitrate plus nitrite concentrations were generally higher than concentrations of organic nitrogen and ammonia. In addition to the routinely collected samples, water samples from the Big Sunflower River Basin were collected using a Lagrangian sampling scheme, which attempts to follow a single mass of water through time in order to determine how it changes through processing or other pathways as the water moves downstream. Lagrangian sampling was conducted five times during the study period: (1) April 8–21, 2010, (2) May 12–June 3, 2010, (3) June 15–July 1, 2010, (4) August 23–30, 2010, and (5) May 16–20, 2011. Streamflow conditions were variable for each sampling event because of input from local precipitation and irrigation return flow, and streamflow losses through the streambed. Streamflow and total nitrogen flux increased with drainage area, and the dominant form of nitrogen varied with drainage area size and temporally across sampling events. Results from each method indicate relatively conservative transport of nitrogen within the 160 miles between Clarksdale and Anguilla, providing further validation of the SPARROW models. Furthermore, these results suggest relatively conservative transport of nitrogen from the Big Sunflower River to the Gulf of Mexico and, therefore, imply a fairly close association of nutrient application and export from the Big Sunflower River Basin to the Mississippi River. However, within the Big Sunflower River Basin, two potential nitrogen sinks were identified and include the transport and potential transformation of nitrogen through the streambed and the sequestration and potential transformation of nitrogen above the drainage control structures downstream of Anguilla. By coupling these potential loss mechanisms with nitrogen transport dynamics, it may be possible to further reduce the amount of nitrogen leaving the Big Sunflower River Basin and ultimately arriving at the Gulf of Mexico.

Arkansas;Louisiana;Mississippi↗

USGS2017

Characterization of streamflow, suspended sediment, and nutrients entering Galveston Bay from the Trinity River, Texas, May 2014–December 2015

The U.S. Geological Survey (USGS), in cooperation with the Texas Water Development Board and the Galveston Bay Estuary Program, collected streamflow and water-quality data at USGS streamflow-gaging stations in the lower Trinity River watershed from May 2014 to December 2015 to characterize and improve the current understanding of the quantity and quality of freshwater inflow entering Galveston Bay from the Trinity River. Continuous streamflow records at four USGS streamflow-gaging stations were compared to quantify differences in streamflow magnitude between upstream and downstream reaches of the lower Trinity River. Water-quality conditions were characterized from discrete nutrient and sediment samples collected over a range of hydrologic conditions at USGS streamflow-gaging station 08067252 Trinity River at Wallisville, Tex. (hereinafter referred to as the “Wallisville site”), approximately 4 river miles upstream from where the Trinity River enters Galveston Bay. Based on streamflow records, annual mean outflow from Livingston Dam into the lower Trinity River was 2,240 cubic feet per second (ft 3 /s) in 2014 and 22,400 ft 3 /s in 2015, the second lowest and the highest, respectively, during the entire period of record (1966–2015). During this study, only about 54 percent of the total volume measured at upstream sites was accounted for at the Wallisville site as the Trinity River enters Galveston Bay. This difference in water volumes between upstream sites and the Wallisville site indicates that at high flows a large part of the volume released from Lake Livingston does not reach Galveston Bay through the main channel of the Trinity River. These findings indicate that water likely flows into wetlands and water bodies surrounding the main channel of the Trinity River before reaching the Wallisville site and is being stored or discharged through other channels that flow directly into Galveston Bay. To characterize suspended-sediment concentrations and loads in Trinity River inflow to Galveston Bay, a regression model was developed to estimate suspended-sediment concentrations by using acoustic backscatter data as a surrogate. The model yielded an adjusted coefficient of determination value of 0.92 and a root mean square error of 1.65 milligrams per liter (mg/L). The mean absolute percentage error between measured and estimated suspended-sediment concentration was 35 percent. During this study, estimated suspended-sediment concentrations ranged from 2 to 701 mg/L, with a mean of 97 mg/L. Suspended-sediment concentrations varied in response to changes in discharge, with peak suspended-sediment concentrations occurring 1 to 2 days before the peak discharge for each event. The total suspended-sediment load at the Wallisville site during May 2014–December 2015 was approximately 2,200,000 tons, with a minimum monthly suspended-sediment load of 100 tons in October 2014 and a maximum monthly load of 441,000 tons in November 2015. Results from nutrient samples collected at the Wallisville site indicate that total nitrogen and total phosphorus concentrations fluctuated at a similar rate, with the highest nutrient concentrations occurring during periods of high flow corresponding to releases from Lake Livingston. The mean concentrations of total nitrogen and total phosphorus were approximately 75 percent higher during high flow releases than during periods of low flow, overshadowing variations in nutrient concentrations caused by seasonality at the Wallisville site. Results from the study indicate nutrient delivery to Galveston Bay from the main channel of the Trinity River is likely controlled primarily by high-flow releases from Lake Livingston. For most samples collected at the Wallisville site, organic nitrogen was the predominant form of nitrogen; however, when discharge increased because of releases from Lake Livingston, the percentage of organic nitrogen typically decreased and the percentage of nitrate increased. The concentrations of total phosphorus also increased during high-flow events, likely as a result of suspended sediment within Lake Livingston releases and mobilization of sediment particles in the river channel and flood plain during these periods of high flow. The predominant source of phosphorous to Galveston Bay from the Trinity River is in particulate form closely tied to suspended-sediment concentrations. The changes in nutrient concentration and composition caused by releases from Lake Livingston during this study indicate the reservoir may play an important role in the delivery of nutrients into Galveston Bay. Further study is required to better understand the processes in Lake Livingston influencing the characteristics of nutrient and sediment inflow to Galveston Bay. With phosphorous concentrations correlated to suspended-sediment concentrations (coefficient of determination value of 0.75) and with the concentrations of nutrients changing as the discharge changes, the diversion of water and suspended sediment into surrounding wetlands and channels outside of the main channel of the Trinity River may play a large role in regulating nutrient inputs into Galveston Bay.

Texas↗

USGS2018

Spatial and temporal trends in selenium in the upper Blackfoot River watershed, southeastern Idaho, 2001–16

Phosphate mining in southeastern Idaho has been an important economic driver for the region and State for over 100 years, but weathering of mining waste rock has also released selenium into the Blackfoot River. This report analyzes and presents data from three separate but complementary studies monitoring selenium in streams in the region. The U.S. Geological Survey (USGS), in cooperation with the Bureau of Land Management, has been collecting streamflow and water-quality samples year-round on the Blackfoot River above reservoir near Henry, Idaho, (USGS streamgage 13063000) since 2001. Over the same period, the Idaho Department of Environmental Quality (IDEQ) has collected streamflow and water-quality samples from the Blackfoot River and tributaries during spring runoff. Data collected from 2001 to 2012 during these two studies were analyzed previously. This report extends the analysis using new data collected through 2016. This report also presents the results of a joint USGS and IDEQ seepage study conducted in June 2016 in the Blackfoot River near Dry Valley. Although limited in scope, this study explored the hypothesis that unaccounted selenium loading (loading in excess of tributary inputs) in this reach could be caused by groundwater inflow. USGS dissolved selenium concentration data from streamgage 13063000 on the Blackfoot River and IDEQ data from the mainstem and mining-affected tributaries are highest shortly after peak runoff and correlate with streamflow magnitude. Although earlier analyses indicated increasing selenium concentrations from 2001 to 2012, this study shows that runoff and baseflow dissolved selenium concentrations increased and then decreased during 2001–16. High median runoff concentrations from 2005 through 2011 are associated with high snowpack and streamflow. This result suggests that more snowmelt moving through selenium-bearing waste rock leads to increased instream concentrations. The time lag between peak runoff and then peak selenium concentrations suggests that selenium mobilization may occur as snowmelt percolates through waste rock rather than by faster surface runoff. However, variability in local snow accumulation and snowmelt conditions likely affects interannual variability in selenium concentrations in the mainstem Blackfoot River and tributaries. In contrast to runoff selenium concentrations, median baseflow (August to October) dissolved selenium concentrations were highest from 2009 to 2013. Aquatic plant senescence and release of selenium is an unlikely explanation for this trend because plants are still growing during this time of year. In addition, this trend is observed during and shortly after the observed period of high snowpack. Thus, increased baseflow selenium concentrations suggest that increased selenium loading to alluvial groundwater may occur during periods of high snowmelt and manifest in later years as higher instream concentrations during baseflows when the majority of streamflow is attributable to groundwater gains. Runoff-period streamflow and selenium loads were calculated for the tributaries and mainstem Blackfoot River. Selenium loads vary from year to year with mainstem loads greater than the total tributary contributions in some years and less than tributary contributions in other years. In general, East Mill Creek usually accounted for the largest proportion of the total Blackfoot River load, and unaccounted loads (loads in excess of tributary inputs) often occurred in the vicinity of Spring Creek and Dry Valley. The latter observation led the USGS and IDEQ to conduct a seepage study to further investigate groundwater and selenium loading to the Blackfoot River near Dry Valley. The seepage study results show consistent albeit small unaccounted increases in streamflow and dissolved selenium load in the Blackfoot River near Dry Valley. Field observation of a spring to the north of the river and independent groundwater monitoring data from Dry Valley to the south of the river suggest that alluvial groundwater may discharge to the river from both sides. However, the small unaccounted selenium load measured in the June 2016 study relative to loads measured during runoff suggest that groundwater loading in this reach may occur primarily during runoff. An improved understanding of alluvial groundwater extent, gradient, hydraulic conductivity, and quality would aid in interpreting unaccounted gains and losses in selenium loads in the Blackfoot River. Finally, State of Idaho selenium water-quality criteria have recently shifted to a hierarchical fish tissue and water concentration scheme. This report summarizes existing fish tissue and water-quality data in the mainstem and offers considerations for future selenium monitoring in the Blackfoot River.

Idaho↗

USGS2019

Hydrogeology of Lower Amargosa Valley and groundwater discharge to the Amargosa Wild and Scenic River, Inyo and San Bernardino Counties, California, and adjacent areas in Nye and Clark Counties, Nevada

In 2009, Congress designated certain reaches of the Amargosa River in Inyo County, California between the town of Shoshone and Dumont Dunes as a Wild and Scenic River. As part of the management of the Amargosa Wild and Scenic River, the Bureau of Land Management cooperated with the U.S. Geological Survey to assess the surface and groundwater resources of the Tecopa basin. Groundwater is the primary source of water to the perennial reaches of the Amargosa River. The U.S. Geological Survey studied the surface and groundwater systems in the basin, and assessed the sources and volume of groundwater discharging into the perennial reaches of the Amargosa Wild and Scenic River. The springs within the Tecopa basin (and the greater Lower Amargosa Valley Hydrographic Area) can be generally grouped by spring type and geographic location. There are four types of groundwater discharge points in the Tecopa basin—regional carbonate-rock springs and seeps, Tecopa Hills springs and seeps, thermal springs and seeps, and Amargosa Canyon hillslope springs and seeps. Results of chemical analysis indicate that water from all of these springs in the Lower Amargosa Valley and particularly in the Tecopa basin, is sourced in the carbonate-rock aquifer, with a local component of recharge. Groundwater is recharged in the Spring Mountains and moves through and around the Nopah and Resting Spring Ranges and into the Tecopa basin. A small (less than 1 cubic foot per second [ft 3 /s] or 500 acre‑feet per year) component of flow from the Amargosa Desert moves through the river channel alluvium and basin fill from the north. The location and type of spring appear to be controlled by the geology and geologic structure of the Lower Amargosa Valley. The regional springs (such as Shoshone and Borax Springs) and associated seeps tend to occur along the west side of the basin whereas other carbonate-rock aquifer springs discharge from adjacent mountain ranges, such as the Resting Spring Range, and as a result of low-permeability barriers, such as the Tecopa Hills. The thermal springs and seeps discharge from an area near the town of Tecopa, California. The Amargosa Canyon hillslope springs and seeps discharge directly into the river. Salt-crusted soils adjacent to the river indicate additional areas of diffuse discharge where groundwater is being evaporated. Perennial flow in the main channel of the Amargosa River appears to originate in an area of thermal springs near Tecopa. Persistent groundwater-fed pools begin to appear along the river channel just to the south of the Tecopa Hills. Flow between these pools is evident, but difficult to measure. During the synoptic seepage measurement survey in February 2014, flow in the Amargosa River at the Tecopa streamgage (U.S. Geological Survey site 10251300, Amargosa River at Tecopa, California) was approximately 1 ft 3 /s. Just to the south of the Tecopa streamgage, a line of cooler water springs (the Amargosa Canyon hillslope springs) emerges east of the river channel and continues for approximately 1 mile along the Amargosa Canyon wall. At the end of the spring reach, the flow in the river increased to just over 4 ft 3 /s. Flow then decreased to approximately 3 ft 3 /s at the confluence of Willow Creek, approximately 3.5 miles downstream. Downstream from the confluence of Willow Creek, the river consistently loses water and was dry just north of Dumont Dunes during the February 2014 synoptic seepage measurement survey.

California, Nevada↗

USGS2019

Flood-inundation maps of the Meramec River from Eureka to Arnold, Missouri, 2018

Libraries of digital flood-inundation maps that spanned a combined 37.2-mile reach of the Meramec River that extended upstream from Eureka, Missouri, to downstream near the confluence of the Meramec and Mississippi Rivers were created by the U.S. Geological Survey (USGS) in cooperation with the U.S. Army Corps of Engineers, Metropolitan St. Louis Sewer District, Missouri Department of Transportation, Missouri American Water, Federal Emergency Management Agency Region 7, and the cities of Pacific, Eureka, Wildwood, and Arnold. The flood-inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science website at https://water.usgs.gov/osw/flood_inundation/ , depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) at the cooperative USGS streamgages for the Meramec River near Eureka, Mo. (USGS station 07019000), the Meramec River at Valley Park, Mo. (USGS station 07019130), the Meramec River at Fenton, Mo. (USGS station 07019210), and the Meramec River at Arnold, Mo. (USGS station 07019300). Near-real-time stage data at these streamgages may be obtained from the USGS National Water Information System at https://doi.org/10.5066/F7P55KJN or the National Weather Service (NWS) Advanced Hydrologic Prediction Service at https://water.weather.gov/ahps/ , which also forecasts flood hydrographs at these sites (listed as NWS sites erkm7, vllm7, fnnm7, and arnm7, respectively). Flood profiles were computed for the stream reach by means of a calibrated one-dimensional step-backwater hydraulic model. The model was calibrated using a stage-discharge relation at the Meramec River near Eureka, Mo., streamgage (USGS station 07019000) and documented high-water marks from the flood of December 2015 through January 2016. The calibrated hydraulic model was used to compute water-surface profiles: 1 set for the Meramec River near Eureka, Mo., streamgage (USGS station 07019000); 1 set for the Meramec River at Valley Park, Mo., streamgage (USGS station 07019130); 7 sets for the Meramec River at Fenton, Mo., streamgage (USGS station 07019210) for a range of Mississippi River conditions; and 8 sets for the Meramec River at Arnold, Mo., streamgage (USGS station 07019300) for a range of Mississippi River conditions. The water-surface profiles were produced for stages at 1-foot (ft) intervals referenced to the datum from each streamgage and ranging from the NWS action stage, or near bankfull discharge, to the stage corresponding to the estimated 0.2-percent annual exceedance probability (500-year recurrence interval) flood, as determined at the Meramec River near Eureka, Mo., streamgage (USGS station 07019000). The simulated water-surface profiles then were combined with a geographic information system digital elevation model (derived from light detection and ranging data having a 0.28-ft vertical accuracy and 3.28-ft horizontal resolution) to delineate the area flooded at each simulated 1-ft stage increment. Previously published flood-inundation maps were updated and incorporated in the flood map libraries for USGS stations 07019130 and 07019210 to complete the map sets corresponding to eight Mississippi River conditions. The availability of these maps, along with internet information regarding current stage from the USGS streamgages and forecasted high-flow stages from the NWS, will provide emergency management personnel and residents with information that is critical for flood response activities such as evacuations and road closures and for postflood recovery efforts.

Missouri↗

USGS2021

Flow characteristics and salinity patterns in tidal rivers within the northern Ten Thousand Islands, southwest Florida, water years 2007–19

Freshwater flow to the Ten Thousand Islands (TTI) estuary has been altered by the construction of the Tamiami Trail and construction of features in the now defunct Southern Golden Gate Estates development. This development included four associated canals that combine into the Faka Union Canal, which discharges into the TTI estuary. The Picayune Strand Restoration Project (PSRP) was initiated in 2007 to improve freshwater delivery to the TTI estuary by removing hundreds of miles of roads, emplacing hundreds of canal plugs, removing exotic vegetation, and constructing three pump stations. Quantifying the tributary flows and salinity patterns prior to, during, and after the restoration is essential to assessing the effectiveness of upstream restoration efforts. The U.S. Geological Survey, in cooperation with U.S. Army Corps of Engineers, initiated an ongoing study in 2006 to assess flow and salinity patterns in the TTI estuary. This is the second report by the U.S. Geological Survey describing flow characteristics and salinity patterns in the TTI area as part of the PSRP. This report describes flow characteristics and salinity patterns for the monitoring stations at Faka Union River, Pumpkin River, and East River and includes an assessment of salinity data from the Faka Union Boundary and Blackwater River water-quality stations for water years 2007–19. A water year is defined as the 12-month period from October 1 for any given year to September 30 of the following year. Annual and monthly variations in flow and salinity are often related to variations in rainfall with high and low annual flows (and below average and above average salinities) typically occurring during years with high and low annual rainfall, respectively. Monthly flows typically begin increasing in June and peak in September. Over the study period, positive trends in rainfall-adjusted monthly flow were detected at Faka Union River and East River, whereas no significant trend in flow was detected at Pumpkin River. Faka Union River is the largest contributor of freshwater to the TTI estuary, providing over 80 percent of the annual freshwater inflow to the estuary. The Faka Union Canal is expected to be the largest contributor of freshwater because until the PSRP is completed, the Faka Union Canal receives substantial drainage from multiple canals, which is not the case for Pumpkin and East Rivers. East River was the second largest contributor, followed by Pumpkin River. East River is downstream of the Fakahatchee Stand, which is a larger contributing area than the current contributing area for Pumpkin River. Monthly mean salinities were lowest at Faka Union River and East River, indicating that they received a greater amount of freshwater than the stations to the west. Negative trends in rainfall-adjusted salinity monthly means were observed at all monitoring stations during the study period. Increased trends in flow and decreased trends in salinity are attributed to increases in flow from upstream canals.

Florida↗

USGS2021

Hydrologic and water-quality conditions in the Cedar River alluvial aquifer, Linn County, Iowa, 1990–2019

Alluvial aquifers in Iowa have more wells with nitrate exceeding drinking-water standards than other aquifers; are susceptible to contamination by organic contaminants; and have high concentrations of naturally occurring iron and manganese in depositional areas that contain abundant organic matter. The U.S. Geological Survey, in cooperation with the City of Cedar Rapids, Iowa, studied the Cedar River alluvial aquifer in Linn County, Iowa, from 1990 to 2019 to understand the effect of municipal pumping on spatial and temporal hydrologic and water-quality variability. The Cedar River alluvial aquifer is the source of water for the city of Cedar Rapids, Iowa. Withdrawal of large quantities of water for municipal and industrial supply has altered the normal flow of water in the alluvial aquifer. Pumping induces flow from the Cedar River and the underlying bedrock aquifer into the alluvial aquifer. Water quality in the alluvial aquifer varies along the Cedar River. Changes in nitrate, ammonia, manganese, and iron in the alluvial aquifer are seen as the upstream free-flowing reach of the Cedar River transitions to a partially regulated downstream reach, likely because of differences in reduction-oxidation conditions in the aquifer, which are controlled by infiltration from the Cedar River under normal conditions and when wells are being pumped. Nitrate, normally found in oxygenated environments, had the highest concentrations in the most upstream wells in the Seminole well field and the lowest concentrations in the most downstream wells in the East well field. In contrast, ammonia, manganese, and iron, normally found in greatest abundance in anoxic (reducing) conditions, had the greatest concentrations in the most downstream wells. Additionally, dissolved nitrate plus nitrite nitrogen concentrations in wells were substantially less and manganese concentrations were greater in production wells near backwater wetlands in contrast to wells near the Cedar River. Temporal variability in water quality in the alluvial aquifer was driven by pumping that increased flow from the Cedar River into the alluvial aquifer and ultimately led to changes in reduction-oxidation conditions of the aquifer. Increasing dissolved nitrate plus nitrite nitrogen concentrations in the Cedar River from 1990 to 2019 were mirrored in the alluvial aquifer. Anoxic conditions are prevalent in the alluvial aquifer next to the Cedar River when the aquifer is not under pumping stress. However, production well pumping caused induced infiltration of oxygenated river water into the aquifer resulting in increased dissolved nitrate plus nitrite nitrogen concentrations and pesticides and decreased naturally occurring dissolved iron and manganese. Hydrologic and water-quality conditions in the Cedar River alluvial aquifer from 1990 to 2019 provide baseline conditions needed to evaluate the effects of current and future nutrient reduction efforts and land-use changes in the Cedar River Basin on water quality of the Cedar River alluvial aquifer and its source water, the Cedar River. This summary and analysis provide information that can assist the City of Cedar Rapids Utilities Water Department in managing groundwater resources, and provides information that could be used develop a groundwater-quality model to characterize variability over larger areas of the alluvial aquifer, allowing water providers to plan for future water needs of their users.

Iowa↗

USGS2000

Spatial distribution, temporal variability, and chemistry of the salt wedge in the lower Charles River, Massachusetts, June 1998 to July 1999

The Charles River is of great recreational and ecological value to the Boston metropolitan region and the Commonwealth of Massachusetts. It is also the focus of the U.S. Environmental Protection Agency (USEPA) Region I, Clean Charles 2005 Task Force. The main goal of the Task Force is to make the Charles River 'fishable and swimmable' by the year 2005. Achieving 'fishable and swimmable' conditions will require continued progress in addressing a range of environmental conditions now degrading water quality, including the infiltration of saltwater from Boston Harbor into the freshwater Charles River.To better understand the pattern of saltwater intrusion, the U.S. Geological Survey (USGS), in cooperation with the U.S. Environmental Protection Agency (USEPA), Massachusetts Department of Environmental Management (MADEM), and New England Interstate Water Pollution Control Commission (NEIWPCC), collected data on the spatial distribution, temporal variability, and chemistry of the saltwater that entered the lower Charles River from June 1998 to July 1999. The purpose of this investigation is to extend and complement a regional-scale study of Charles River water quality conducted in 1996 (T. Faber, U.S. Environmental Protection Agency, written commun., 1997), and the ongoing water monitoring activities of the Massachusetts Water Resources Authority (MWRA) and the Charles River Watershed Association (CRWA). The data collected by this investigation supports the Clean Charles 2005 Task Force by providing detailed information concerning a major factor limiting 'fishable and swimmable' conditions in the lower Charles River. Finally, the study will be used to assist current planning efforts of the Metropolitan District Commission (MDC) to restore the historic parklands of the lower Charles River.The 'Basin' is the local term for the reach of the Charles River that begins at the Watertown Dam in Watertown, Mass., and extends about 8 mi through suburban and urban areas to Boston Harbor. Discharge to the harbor is controlled by the 'new' Charles River Dam in Boston (fig. 1). The Basin was created by construction of the 'old' Charles River Dam in 1908 to solve Boston's sanitary problems. Prior to the building of the old Charles River Dam, the lower Charles River was a tidal estuary in which the water levels rose and fell twice daily with the tidal cycle. Low tide would expose untreated sewage that was discharged directly into the river. Exposed sewage created noxious odors and served as a breeding ground for mosquitoes that caused sporadic epidemics of malaria and yellow fever (Jobin, 1998). Damming of the river interrupted the normal tidal cycle and flooded the estuary by creating a freshwater pool (the Basin) that had a constant water elevation of about 0.8 meters (m) above mean sea level. Flooding of the estuary initially improved sanitary conditions and the Basin became a source of enjoyment for the local population and the focus of a large waterfront park in Boston and Cambridge (Jobin, 1998).Although the infiltration of saltwater from the harbor into the Basin was anticipated when the old Charles River Dam was built, neither the magnitude nor the consequences of the infiltration was considered. By 1975, the Metropolitan District Commission (MDC) determined that harbor water covered about 80 percent of the river bottom within the Basin and composed about 50 percent of its depth. The MDC also concluded that fish kills and odors in the spring of 1975 were likely the result of the sulfide-rich saltwater mixing with the overlying freshwater (Metropolitan District Commission, 1975).Saltwater from Boston Harbor that enters the Basin is known as the 'salt wedge' because of the shape it assumes as it moves upstream. Freshwater discharge from upstream pushes against the intruding harbor water until the density differences cause stratification to occur; the freshwater then overrides the denser harbor water (Fischer and others, 1979). The depth from

Water-Resources Investigations Report↗

USGS2001

Effects of ground-water withdrawals on flow in the Sauk River Valley Aquifer and on streamflow in the Cold Spring area, Minnesota

The U. S. Geological Survey, in cooperation with the city of Cold Spring, Minnesota conducted a study during 1998-99 to: (1) determine the contributing areas of groundwater flow to high-capacity wells, (2) delineate the 10-, 20-, and 30-year time-of-travel zones to high-capacity wells, and (3) determine changes in streamflow in the Sauk River due to ground-water withdrawals. Surficial aquifers underlie a portion of the uplands in the north-central part of the study area and the Sauk River Valley. The upland surficial aquifer is unconfined, with saturated thicknesses ranging from 6 to 37 feet. The Sauk River Valley aquifer consists of hydraulically connected sand and gravel units: (1) the generally continuous surficial unconfined unit underlying the Sauk River Valley and (2) buried confined units that are overlain by till or lake clays in the upland areas. Maximum saturated thickness of the Sauk River Valley aquifer is about 50 feet. Thicknesses of the buried units are generally 10 to 20 feet. Ground-water flow in the upland surficial aquifer is (1) to the south and southeast toward the margins of the aquifer and (2) toward an unnamed creek valley in the northwestern part of the study area. Ground-water flow in the Sauk River Valley aquifer is from upland areas toward the Sauk River and the connected chain of lakes. Based on hydrograph analysis, ground-water recharge rates to the aquifers during 1999 ranged from 5.3 to 8.6 inches per year, with an average value of 7.0 inches per year. Streamflow measurements indicated net gains of 44.8 and 25.8 cubic feet per second for the Sauk River from Cold Spring to Rockville during October 1998 and August 1999, respectively. In general, the Sauk River probably is a gaining stream in all reaches, except for the reach adjacent to the Gold'n Plump Poultry Processing Plant well field. Ground-water withdrawals from the well field induce infiltration of water from the Sauk River to the underlying aquifer. The measured gains in streamflow for Brewery Creek were 2.75 and 2.25 cubic feet per second during October 1998 and August 1999, respectively. A numerical ground-water-flow model was constructed and calibrated for steady-state conditions. Based on the calibrated model, areal recharge accounts for 51.5 percent of the sources of water to the aquifers in the Cold Spring area and inflow through constant-head boundaries contributes 45.8 percent. The largest discharges from the aquifers are leakage from the Sauk River Valley aquifer to the Sauk River and Brewery Creek (53.7 percent) and outflow through constant-head boundaries (33.1 percent). The simulated contributing areas for selected watersupply wells in the Cold Spring area generally extend to and possibly beyond the model boundaries to the north and to the southeast. The contributing areas for the Gold'n Plump Poultry Processing Plant supply wells extend: (1) to the Sauk River, (2) to the north to and possibly beyond to the northern model boundary, and (3) to the southeast to and possibly beyond the southeastern model boundary. The primary effects of projected increased ground-water withdrawals of 0.23 cubic feet per second (7.5 percent increase) were to: (1) decrease outflow from the Sauk River Valley aquifer through constant-head boundaries and (2) decrease leakage from the valley unit of the Sauk River Valley aquifer to the streams. No appreciable differences were discernible between the simulated steady-state contributing areas to wells with 1998 pumpage and those with the projected pumpage.

Minnesota↗