Modelling crustacean fisheries: effects of parasites on management strategies
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The collection of eight papers that follow continue the series of U.S. Geological Survey (USGS) investigative reports in Alaska under the broad umbrella of the geologic sciences. The series presents new and sometimes-preliminary findings that are of interest to earth scientists in academia, government, and industry; to land and resource managers; and to the general public. Reports presented in Studies by the U.S. Geological Survey in Alaska cover a broad spectrum of topics from various parts of the State (fig. 1), serving to emphasize the diversity of USGS efforts to meet the Nation's needs for earth-science information in Alaska. The papers in this volume are organized under the topics Geologic Framework, Resources, and Environment and Climate. This organization is intended to reflect the scope and objectives of current USGS geologic programs in Alaska. In particular, Geologic Framework studies provide background information that is the scientific basis for present and future earth-science investigations.
The eight papers that follow continue the series of U.S. Geological Survey (USGS) reports on investigations in the geologic sciences in Alaska. The series presents new and sometimes preliminary findings that are of interest to earth scientists in academia, government, and industry; to land and resource managers; and to the general public. Reports presented in Geologic Studies in Alaska cover a broad spectrum of topics from all parts of the State (fig. 1), which serves to emphasize the diversity of USGS efforts to meet the Nation's needs for earth-science information in Alaska. The papers in this volume are organized under the topics Resources, Geologic Framework, and Environment and Climate. Such an organization is intended to reflect the scope and objectives of USGS programs currently active in Alaska. Resource papers include one that presents detailed observations from a Mississippian Zn-Pb-Cu-Ag occurrence in the Brooks Range (Werdon). Mineralogic, chemical, and isotopic data provide the basis for a proposed relationship between this vein-breccia deposit and the shale-hosted massive sulfide deposit type, which includes the active Red Dog mine in the western Brooks Range. Also included under the topic of Resources is a paper that presents geochemical and isotopic data from the Greens Creek and Woewodski Island volcanogenic massive sulfide deposits in southeastern Alaska (Newberry and Brew). The depositional environment and sedimentological setting of Tertiary coal beds in the Matanuska and Susitna Valleys is the focus of a third paper under the topic of Resources (Flores and others). Geologic Framework studies provide background information that is the scientific basis for present and future studies of the environment, mineral and energy resources, paleoclimate, and hazards in Alaska. One paper presents the results of sedimentologic and paleontologic comparisons of lower Paleozoic, deep-water-facies rock units in central Alaska (Dumoulin and others). The authors show which of these units are likely to correlate with one another, suggest likely source regions, and provide a structural restoration of units that have been fragmented by large fault motions. A second framework paper provides a map, rock descriptions, and chemical compositions of volcanic rocks in a newly recognized, geologically young volcanic center in the Aleutian volcanic arc (Hildreth and others). A third paper presents an interesting summary of gravity changes that occurred in south-central Alaska during the great earthquake of 1964 and for the following 25 years (Barnes). Gravity changes correlate with land-elevation changes in some cases, but not in others, which means that different processes are responsible for the gravity changes.
The 14 papers that follows continue the series of U.S. Geological Survey (USGS) reports on investigations in the geologic sciences in Alaska. The series presents new and sometimes preliminary findings that are of interest to earth scientists in academia, government, and industry; to land and resource managers; and to the general public. Reports presented in Geologic Studies in Alaska cover a broad spectrum of topics from all parts of the State (fig. 1), which serves to emphasize the diversity of USGS efforts to meet the Nation’s needs for earth-science information in Alaska.
Biodiversity loss is a major threat to the integrity of ecosystems and is projected to worsen, yet the path to successful conservation remains elusive. Decision support frameworks (DSFs) are increasingly applied by resource managers to navigate the complexity, uncertainty, and differing socio-ecological objectives inherent to conservation problems. Most published conservation research that uses DSFs focuses on analytical stages (e.g., identifying an optimal decision), making it difficult to assess and learn from previous examples in a conservation practice context. Here, we (1) evaluate the relationship between the application of decision science and the resulting conservation outcomes, and (2) identify and address existing barriers to the application of DSFs to conservation practice. To do this, we develop a framework for evaluating conservation initiatives using decision science that emphasizes setting attainable goals, building momentum, and obtaining partner buy-in. We apply this framework to a systematic review of amphibian conservation decision support projects, including a follow-up survey of the pertinent conservation practitioners, stakeholders, and scientists. We found that all projects identified optimal solutions to reach stated objectives, but positive conservation outcomes were limited when implementation challenges arose. Further, we identified multiple barriers (e.g., dynamic and hierarchical leadership, scale complexity, limited resource availability) that can inhibit the progression from decision identification to action implementation (i.e., ‘decision-implementation gap’), and to successful conservation outcomes. Based on these results, we provide potential actionable steps and avenues for future development of DSFs to facilitate the transition from decision to action and the realization of conservation successes.
As the regional management agency for two of the most heavily used ground-water basins in California, the Water Replenishment District of Southern California (WRD) plays a vital role in sheparding the water resources of southern Los Angeles County. WRD is using the results of the U.S. Geological Survey (USGS) studies to help more effectively manage the Central and West Coast basins in the most efficient, cost-effective way. In partnership with WRD, the USGS is using the latest research tools to study the geohydrology and geochemistry of the two basins. USGS scientists are: *Drilling and collecting detailed data from over 40 multiple-well monitoring sites, *Conducting regional geohydrologic and geochemical analyses, *Developing and applying a computer simulation model of regional ground-water flow. USGS science is providing a more detailed understanding of ground-water flow and quality. This research has enabled WRD to more effectively manage the basins. It has helped the District improve the efficiency of its spreading ponds and barrier injection wells, which replenish the aquifers and control seawater intrusion into the ground-water system.
The U.S. Geological Survey (USGS), created in 1879, is the national geological survey for the United States and the sole science agency within its cabinet-level bureau, the Department of the Interior. The USGS has a broad mission, including: serving the Nation by providing reliable scientific information to describe and understand the Earth; minimize loss of life and property from natural disasters; manage water, biological, energy, and mineral resources; and enhance and protect quality of life. USGS scientific activities are organized around major topics, or Mission Areas, aligned with distinct science themes; three-dimensional (3-D) modelling typically supports research and project work within a specific Mission Area. The vastness, diversity, and complexity of the geological landscape of the United States has resulted in the creation of 3-D geological framework models that are local or regional in scale; a National-scale 3-D model is only beginning to evolve. This paper summarizes 3-D geological modeling at the USGS and does not discuss 3-D modeling that is conducted by other Federal agencies, state geological surveys, academia, or industry within the U.S. This paper updates and expands upon a similar status report of USGS 3-D modeling activities of Jacobsen et al. (2011).
The National Wetlands Research Center (NWRC) library is part of the U.S. Geological Survey (USGS) and is the only USGS library dedicated to wetland science. The mission of the NWRC library is to support the research and information needs of scientists, managers, and support personnel by providing a specialized, scientific collection of library materials and related information services that are responsive to and reflect internal and external customer needs and work processes. The NWRC library participates in international cataloging and resource sharing that allows libraries from throughout the world to borrow from its collections and lend to NWRC. This sharing of materials facilitates the research of other governmental agencies, universities, and those interested in the study of wetlands.
The utilization, preservation, and conservation of the Nation’s resources requires well-informed management decisions. The North Atlantic and Appalachian Region (NAAR) of the U.S. Geological Survey (USGS) supports science-based decision making for Federal, State, and local policymakers to meet the challenges of today and into the future. The science centers in the NAAR have well-deserved reputations as world leaders in delivering unbiased science. We help protect the lives and property of our families, friends, neighbors, and the Nation by providing the data and scientific interpretation that decision makers need to make informed choices on a myriad of topics. Many of our jobs include inherent risk. When others are moving themselves and their families to higher ground during storms, NAAR employees can be found heading toward high water to ensure that accurate streamflow and storm-tide data continue to be collected and delivered to the public and first responders. In March 2020, the world changed, and the NAAR staff adapted to it. Despite the challenges, the NAAR has had an incredibly productive year. I am not just citing publications (with our labs and field offices closed in the spring, centers increased annual publications by 10 to 40 percent compared with 2019) or partnerships (new science initiatives and partnerships are up significantly as well). Leaders at the center level created the right environments for their teams to be safe but still meet and exceed their program goals. Our vast data collection networks were maintained and enhanced. Our laboratories met holding times and quality-control objectives. When folks asked for help, our staff provided. Some solutions were not perfect at first, but they just kept trying. What started as a short-term inconvenience may now have become the new normal, but in quickly adapting, the NAAR staff showed dedication and wisdom, made the region a little safer, and just might change the world. This general information product highlights just a few of the many accomplishments of the NAAR staff during these challenging times and offers a taste of all the great work being done by the USGS community.
This is the second report produced by the U.S. Geological Survey (USGS) for the Wyoming Landscape Conservation Initiative (WLCI) to detail annual work activities. The first report described work activities for 2007 and 2008; this report covers work activities conducted in 2009. Important differences between the two reports are that (1) this report does not lump all the Effectiveness Monitoring activities together as last year's report did, which will allow WLCI partners and other readers to fully appreciate the scope and accomplishments of those activities, and (2) this report does not include a comprehensive appendix of the background details for each work activity. In 2009, there were 29 ongoing or completed activities, and there were 5 new work activities conducted under the 5 original major multi-disciplinary science and technical assistance activities: (1) Baseline Synthesis; (2) Targeted Monitoring and Research; (3) Data and Information Management; (4) Integration and Coordination; and (5) Decisionmaking and Evaluation. New work included (1) developing a soil-quality index, (2) developing methods for assessing levels of and relationships between mercury and soil organic matter, and (3) ascertaining element source, mobility, and fate. Additionally, (4) remotely sensed imagery was used to assess vegetation as an indicator of soil condition and geology, and (5) an Integrated Assessment (IA) was initiated to synthesize what has been learned about WLCI systems to date, and to develop associated decision tools, maps, and a comprehensive report.
The generation of Everglades Depth Estimation Network (EDEN) daily water-level and water-depth maps is dependent on high quality real-time data from over 240 water-level stations. To increase the accuracy of the daily water-surface maps, the Automated Data Assurance and Management (ADAM) tool was created by the U.S. Geological Survey as part of Greater Everglades Priority Ecosystems Science. The ADAM tool is used to provide accurate quality-assurance review of the real-time data from the EDEN network and allows estimation or replacement of missing or erroneous data. This user’s manual describes how to install and operate the ADAM software. File structure and operation of the ADAM software is explained using examples.
Emerging diseases of wildlife origin are increasingly transboundary (they spread rapidly across geographic regions and across continents). In recent years, examples include the rapid spread of African swine fever across Europe and Asia with negative effects on food security, and the near global spread of highly pathogenic avian influenza which has devastated wildlife populations, caused economic harm, and which threatens public health; consequently, international partnerships and networks are essential to facilitate the sharing of information for improved situational awareness and better preparedness and response. In this regard, the U.S. Geological Survey and the Korea National Institute for Wildlife Disease Control and Prevention have had a long-standing partnership to foster scientific collaboration. A key part of the activities has been annual scientific workshops, which commenced in 2016. The 2024 workshop in Hilo, Hawaii, was the most recent in these series of workshops and included participants from across Asia and the Pacific region, including Thailand, Vietnam, China, Republic of Korea, Japan, Australia, Cook Islands, Fiji, and the United States. The goals of the workshop were: to continue to build the wildlife health community of practice in the Asia-Pacific region and expand the participants to agencies and institutions from other countries in the region; and exchange scientific knowledge among the participants to share best practices, create scientific networks, and build capacity in wildlife health science for the Asia-Pacific region. The themes discussed at the workshop included wildlife health risk management, avian Influenza, African swine fever, climate change and emerging diseases, and international cooperation. This report contains the author-submitted abstracts which provide a summary of the presentations and discussions during the workshop. The aim is to share this information to continue to foster international scientific exchange to protect wildlife health, livestock, and public health from the negative impacts of infectious and noninfectious diseases.
The Prairie Pothole Region (PPR) of North America comprises globally important grassland and wetland ecosystems critical for numerous populations of migratory birds. Due to the importance of this region for migratory birds, and particularly waterfowl, and the threats of habitat loss due to intensifying agriculture, there is a mature and diverse system of conservation organizations, agencies, and partnerships that spends hundreds of millions of dollars annually on habitat conservation to support migratory bird populations. Remote sensing can be a powerful tool for observing and evaluating global change at large scales as well as expanding inferences from field studies to the broader landscape with statistical models. However, development and utilization of these tools has lagged behind their demand for several reasons, including concerns over spatial and temporal resolution and accuracy of products; perception of a misalignment with decision-maker needs; technological barriers such as skill sets of conservation professionals, computing resources, data access, and usability. In this report, we summarize the needs of conservation professionals and scientists who use or want to use remote sensing data products to inform science about wetland change and conservation of wetlands in the PPR. We assembled this information through several methods leading up to, during, and following a January 2026 PPR Wetland Remote Sensing Workshop. The workshop included United States and Canadian scientists, conservation professionals, and policy experts. Our goal was to bring together end-users and remote sensing product developers jointly to explore reducing the lag between product development and utilization of products to inform science and conservation. Specifically, we aimed to identify gaps in wetland remote sensing that limit effective monitoring, management, and conservation in the PPR, and to develop a framework that outlines pathways to address these gaps by fostering collaboration, improving communication networks, encouraging discussion, and building on existing and ongoing efforts. This report summarizes our participants’ descriptions of end-user needs and the outcomes of the workshop.
Digital flood-inundation maps for a 5-mile reach of the West Branch Delaware River through the Village and part of the Town of Delhi, New York, were created by the U.S. Geological Survey (USGS) in cooperation with the Village of Delhi, the Delaware County Soil and Water Conservation District, and the Delaware County Planning Department. The inundation maps, which can be accessed through the USGS Flood Inundation Mapping Science Web site at http://water.usgs.gov/osw/flood_inundation/ and the Federal Flood Inundation Mapper Web site at http://wim.usgs.gov/FIMI/FloodInundationMapper.html, depict estimates of the areal extent and depth of flooding corresponding to selected water levels (stages) referenced to the USGS streamgage at West Branch Delaware River upstream from Delhi, N.Y. (station number 01421900). In this study, flood profiles were computed for the stream reach by means of a one-dimensional step-backwater model that had been used to produce the flood insurance rate maps for the most recent flood insurance study for the Town and Village of Delhi. This hydraulic model was used to compute 10 water-surface profiles for flood stages at 1-foot (ft) intervals referenced to the streamgage datum and ranging from 7 ft or near bankfull to 16 ft, which exceeds the stages that correspond to both the estimated 0.2-percent annual-exceedance-probability flood (500-year recurrence interval flood) and the maximum recorded peak flow. The simulated water-surface profiles were then combined with a geographic information system (GIS) digital elevation model, which was derived from Light Detection and Ranging (LiDAR) data with a 1.2-ft (0.61-ft root mean squared error) vertical accuracy and 3.3-ft (1-meter) horizontal resolution, to delineate the area flooded at each water level. A map that was produced using this method to delineate the inundated area for the flood that occurred on August 28, 2011, agreed well with highwater marks that had been located in the field using a global positioning system. The availability of the 10 flood-inundation maps on the USGS Flood Inundation Mapping Science Web site, along with Internet information regarding current stage from the USGS streamgage, will provide emergency management personnel and residents with information that is critical for flood-response activities, such as evacuations and road closures, as well as for post-flood recovery efforts.
The importance of monitoring networks for resource-management decisions is becoming more recognized, in both theory and application. Quantitative computer models provide a science-based framework to evaluate the efficacy and efficiency of existing and possible future monitoring networks. In the study described herein, two suites of tools were used to evaluate the worth of new data for specific predictions, which in turn can support efficient use of resources needed to construct a monitoring network. The approach evaluates the uncertainty of a model prediction and, by using linear propagation of uncertainty, estimates how much uncertainty could be reduced if the model were calibrated with addition information (increased a priori knowledge of parameter values or new observations). The theoretical underpinnings of the two suites of tools addressing this technique are compared, and their application to a hypothetical model based on a local model inset into the Great Lakes Water Availability Pilot model are described. Results show that meaningful guidance for monitoring network design can be obtained by using the methods explored. The validity of this guidance depends substantially on the parameterization as well; hence, parameterization must be considered not only when designing the parameter-estimation paradigm but also-importantly-when designing the prediction-uncertainty paradigm.
This work presents development of an algorithm to reduce the spatial uncertainty of active fire locations within the 1 km MODerate resolution Imaging Spectroradiometer (MODIS Aqua and Terra) daytime detection footprint. The algorithm is developed using the finer 500 m reflective bands by leveraging on the increase in 2.13 μm shortwave infrared reflectance due to the burning components as compared to the non-burning neighborhood components. Active fire presence probability class for each of the 500 m pixels within the 1 km footprint is assigned by locally adaptive contextual tests against its surrounding neighborhood pixels. Accuracy is assessed using gas flares and wildfires in conjunction with available high-resolution imagery. Proof of concept results using MODIS observations over two sites show that under clear sky conditions, over 84% of the 500 m locations that had active fires were correctly assigned to high to medium probabilities, and correspondingly low to poor probabilities were assigned to locations with no visible flaming fronts. Factors limiting the algorithm performance include fire size/temperature distributions, cloud and smoke obscuration, sensor point spread functions, and geolocation errors. Despite these limitations, the resulting finer spatial scale of active fire detections will not only help first responders and managers to locate actively burning fire fronts more precisely but will also be useful for the fire science community.
The Handbook of Ecotoxicology offers 34 chapters with contributions from over 50 selected international experts. The book is divided into four major sections: I. Quantifying and Measuring Ecotoxicological Effects, II. Contaminant Sources and Effects, III. Case Histories and Ecosystem Surveys, and IV. Methods for Making Estimates and Predictability in Ecotoxicology. Concepts and methodology are presented for many types of aquatic and terrestrial ecotoxicity test protocols for both controlled and field assessments. Chapters are offered on such diverse topics as sediment and soil ecotoxicity, landscape indicators, biomonitoring, and use of current bioindicators. The roles of deforestation and global warming, pathogens and disease in ecotoxicology, abiotic factors, urban runoff, predictive ecotoxicology, population modeling, and restoration ecology are discussed. This book was designed to serve as a reference book for students entering the fields of ecotoxicology, aquatic toxicology, terrestrial wildlife toxicology, and other environmental sciences. Many portions of this handbook will serve as a convenient reference text for established investigators, resource managers, and those involved in risk assessment and risk management within regulatory agencies and the private sector.