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Digital archives - Thomas M. Bown's Bighorn Basin maps: The suite of forty-four office master copies

This CD-ROM is a digitally scanned suite of master 'locality' maps produced by Dr. Thomas M. Bown. The maps are archived in the US Geological Survey Field Records. The maps feature annual compilations of newly established fossil (nineteen 7.5 degree maps) of central basin data collections. This master suite of forty-four maps represents a considerably broader geographic range within the basin. Additionally, three field seasons of data were compiled into the master suite of maps after the final editing of the Professional Paper. These maps are the culmination of Dr. Bown's Bighorn Basin research as a vertebrate paleontologist for the USGS. Data include Yale, Wyoming, Duke, Michigan and USGS localities. Practical topographic features are also indicated, such as jeep=trail access, new reservoirs, rerouted roadbeds, measured sections, fossil reconnaissance evaluations (G=good, NG=no good and H=hideous), faults, palcosol stages, and occasionally 'camp' vernacular for locality names.

Open-File Report↗

Observation of a "front" of regional metamorphism

Drawing his inspiration from the theories on metamorphism by reaction in the solid state, and from some observations, Rene Perrin in his article 'Perrin, Rene, Le metamorphisms generateur de plissement, Annales des Hines, Paris, October 1935.' "Metamorphism, the generator of folding" stated in 1935: 1) that some "sudden arrest" of regional metamorphism way occur and that some formations may present a barrier to its progress. It seemed to him that the Trias effectively played that role in some parts of the Alps (Perrin, Rene, p. 14 and 15). 2) p. 33 "A sedimentary formation overlying a folded crystalline rock in disconformity with the schistosity of the latter, does not prove that this rock (the crystalline) was formed and folded prior to the deposition of the sediment." Finally, he advised one (p. 32), before drawing any definite conclusion from the absence of contact metamorphism, to observe very closely the modifications either of the crystalline rock, or of the sedimentary formation, or of both in the vicinity of the contact, any modification being an indication of metamorphic action. Because these concepts seemed at first extremely bold, the authors made a thorough study of some specific cases.

Open-File Report↗

Selected annotated bibliographies for adaptive filtering of digital image data

Digital spatial filtering is an important tool both for enhancing the information content of satellite image data and for implementing cosmetic effects which make the imagery more interpretable and appealing to the eye. Spatial filtering is a context-dependent operation that alters the gray level of a pixel by computing a weighted average formed from the gray level values of other pixels in the immediate vicinity. Traditional spatial filtering involves passing a particular filter or set of filters over an entire image. This assumes that the filter parameter values are appropriate for the entire image, which in turn is based on the assumption that the statistics of the image are constant over the image. However, the statistics of an image may vary widely over the image, requiring an adaptive or "smart" filter whose parameters change as a function of the local statistical properties of the image. Then a pixel would be averaged only with more typical members of the same population. This annotated bibliography cites some of the work done in the area of adaptive filtering. The methods usually fall into two categories, (a) those that segment the image into subregions, each assumed to have stationary statistics, and use a different filter on each subregion, and (b) those that use a two-dimensional "sliding window" to continuously estimate the filter either the spatial or frequency domain, or may utilize both domains. They may be used to deal with images degraded by space variant noise, to suppress undesirable local radiometric statistics while enforcing desirable (user-defined) statistics, to treat problems where space-variant point spread functions are involved, to segment images into regions of constant value for classification, or to "tune" images in order to remove (nonstationary) variations in illumination, noise, contrast, shadows, or haze. Since adpative filtering, like nonadaptive filtering, is used in image processing to accomplish various goals, this bibliography is organized in subsections based on application areas. Contrast enhancement, edge enhancement, noise suppression, and smoothing are typically performed in order imaging process, (for example, degradations due to the optics and electronics of the sensor, or to blurring caused by the intervening atmosphere, uniform motion, or defocused optics). Some of the papers listed may apply to more than one of the above categories; when this happens the paper is listed under the category for which the paper's emphasis is greatest. A list of survey articles is also supplied. These articles are general discussions on adaptive filters and reviews of work done. Finally, a short list of miscellaneous articles are listed which were felt to be sufficiently important to be included, but do not fit into any of the above categories. This bibliography, listing items published from 1970 through 1987, is extensive, but by no means complete. It is intended as a guide for scientists and image analysts, listing references for background information as well as areas of significant development in adaptive filtering.

Open-File Report↗

Snake River fall Chinook salmon life history investigations, 1/1/2012 - 12/31/2012: Annual report 2002-032-00

Executive Summary a. Fish Population RM&E This annual report describes the data collected and analyses conducted during calendar years 2012-2013 by staff of project 20023200. The USGS contributed only to the predation research and reservoir invertebrate work described in this report and the presentation of their results is consistent with USGS policy guidelines. The USGS is not responsible for the content provided by other contributing authors. Any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The main goal of this project is to better understand juvenile Snake River fall Chinook salmon life history diversity and the factors that influence it. This is called for in RPA 55.4 “Investigate key characteristics of Snake River fall Chinook salmon early life history.” We 3 investigated the importance of estuary entry and rearing to various Snake River fall Chinook salmon life histories. Otoliths were used to examine differences in estuary use between subyearlings and yearlings, and to determine natal habitats, rearing habitats, and overwintering habitat for returning adults. Estuary growth was best explained by estuary residence time and natal location. b. Predation and Invasive Species Management RM&E We investigated the extent of smallmouth bass predation on juvenile fall Chinook salmon in Lower Granite Reservoir as called for in the Fish and Wildlife Program, “The federal action agencies should work cooperatively with NOAA Fisheries, states, tribes, and the Council to review, evaluate, develop, and implement strategies to reduce non-native piscivorous predation on salmon and steelhead, especially by smallmouth bass, channel catfish, and walleye” (Page 52). Smallmouth bass stomach contents were collected and analyzed for the presence of juvenile salmon. Smallmouth bass abundance was estimated with mark-recapture techniques, and salmon consumption by bass was expanded based on bass abundance to determine the annual loss of juvenile fall Chinook salmon for the study period and area. The estimated loss of juvenile fall Chinook salmon to predation in Lower Granite Reservoir exceeded 109,000 fish in 2012. This information could be used to adaptively formulate better hatchery release strategies to reduce the effects of predation. Obtaining better estimates of smallmouth bass abundance and distribution in future years would reduce the uncertainty of estimates. This study will be completed by 2017. We also examined the effects of various field temperature scenarios resulting from summer flow augmentation on juvenile fall Chinook salmon susceptibility to smallmouth bass predation in laboratory trials. Predation susceptibility of juvenile salmon acclimated at cool temperatures (10°C) was highest when exposed to predators at 24°C. These results indicate that predation susceptibility may be higher when a relatively large temperature difference exists between the Clearwater and Snake rivers; that is, when cool water flow augmentation occurs in summer. Finally, we examined the role of different invasive invertebrates in lower Snake River reservoir food webs that are food, or competitors for food, for juvenile fall Chinook salmon. The Siberian prawn, a relatively new invader, is relatively abundant but its role on the food web is largely unexplored. Prawns are successfully reproducing and their diet is 81% Neomysis (an invasive opossum shrimp) which is heavily used at times by juvenile salmon for food. Neomysis has become very abundant in lower Snake River reservoirs in recent years and may be a profitable food item for many fish species.

Oregon, Washington↗

Bioaccumulation and toxicity of selenium during a life-cycle exposure with desert pupfish (Cyprinodon macularius)

Populations of desert pupfish ( Cyprinodon macularius ; pupfish), a federally-listed endangered species, inhabit irrigation drains in the Imperial Valley agricultural area of southern California. These drains have varying degrees of selenium (Se) contamination of water, sediment, and aquatic biota. Published Se toxicity studies suggest that these levels of Se contamination may pose risk of chronic toxicity to Se-sensitive fish, but until recently there have been no studies of the chronic toxicity of Se to desert pupfish. A life-cycle Se exposure with pupfish was conducted to estimate dietary and tissue thresholds for toxic effects of Se on all life stages. The dietary exposure was based on live oligochaete worms ( Lumbriculus variegatus ) dosed with Se by a laboratory food chain based on selenized yeast. Oligochaetes readily accumulated Se from mixtures of selenized and control yeasts. The protocol for dosing oligochaetes for pupfish feeding studies included long-term (at least 28 days) feeding of a low-ration of yeast mixtures to large batches of oligochaetes. Oligochaetes were dosed at five Se levels in a 50-percent dilution series. Pupfish were simultaneously fed Se-dosed oligochaetes and exposed to a series of Se concentrations in water (consisting of 85 percent selenate and 15 percent selenite) to produce exposures that were consistent with Se concentrations and speciation in pupfish habitats. The nutritional characteristics of oligochaete diets were consistent across the range of oligochaete Se concentrations tested. The life-cycle exposure started with laboratory-cultured juvenile pupfish that were exposed to Se through sexual maturation and reproduction (150 days; F0 exposure). The Se exposure continued with eggs, larvae, and juveniles produced by Se-exposed parents (79 days; F1 exposure). Selenium exposure (water and diets), Se bioaccumulation (whole-body and eggs), and toxicity endpoints (juvenile and adult survival and growth; egg production and hatching success, larval survival and deformities) were documented throughout the life-cycle study. Selenium concentrations in water (as much as 52 micrograms per liter [μg/L]) and diets (as much as 53 micrograms per gram [μg/g], on a dry weight basis) bracketed concentrations reported in pupfish habitats. Juvenile F0 pupfish rapidly accumulated Se and bioaccumulation models indicated that pupfish had reached more than 97 percent of maximum whole-body Se concentrations by the time they reached reproductive maturity. Adult pupfish accumulated whole-body Se concentrations that averaged about 40 percent of those in the oligochaete diets. Selenium concentrations in eggs and F1 juveniles were similar to or slightly greater than Se concentrations in F0 adults. Juvenile F0 pupfish contained selenomethionine fractions (62–71 percent of whole-body Se) greater than the average reported for wild pupfish from the Imperial Valley (53 percent). Selenium exposure had minimal effects on survival or growth of juvenile and adult pupfish. There was evidence of toxic effects on pupfish in the highest Se treatment (Se–5), including reduced growth of F0 and F1 juvenile pupfish (17–21 percent less than controls) on some sampling dates. These growth reductions did not persist to subsequent sampling dates, but reduced growth of F1 pupfish in the Se–5 treatment was associated with reduced survival (12 percent less than controls). Egg production was greatest in the controls and decreased with increasing Se exposure, reaching a minimum (51 percent less than controls) in the Se–4 treatment, but egg production was reduced by only 24 percent in the Se–5 treatment, a lesser reduction than in other Se treatments except Se–1. There was no statistically significant overall effect of Se treatment on mean pupfish egg production, reflecting large variation among replicates and among sampling dates. However, comparisons of daily mean egg production for 23 sampling dates indicated that egg production in each of 5 Se treatments was significantly less than controls on multiple (3–7) sampling dates, but no mean for any Se treatment was significantly greater than controls on any date. Significant reductions in daily egg production occurred mainly during the middle of the study and egg production increased in several Se treatments during the final 2 weeks of the study. These results suggest that pupfish egg production, although a highly variable endpoint, was adversely affected by elevated Se exposure. Neither egg hatching success nor survival of F1 larvae indicated clear evidence of Se toxicity. Egg hatching success did not differ significantly among treatments, with means ranging from 84–91 percent. The frequency of morphological deformities (primarily spinal deformities) was greater in larvae 10 days post-fertilization (dpf) from a preliminary reproduction study than in older larvae (14 dpf) from the main reproduction study. The frequency of larval deformities was generally greater in Se treatments than controls, but mean frequencies did not differ significantly among treatments. Survival of F1 larvae to 21 dpf was not reduced significantly by parental Se exposure, but the Se–5 treatment had the lowest larval survival (84 percent), and lowest combined egg hatching and larval survival (76 percent). Results of the Se treatments indicate that pupfish were insensitive to Se toxicity through most of their life cycle. Consistent toxic effects on survival and growth of juvenile and adult pupfish (defined as at least 10 percent reduction compared to controls) occurred only in treatment Se–5, which had a mean dietary Se concentration of 52 μg/g and a mean pupfish whole-body Se concentration of 27 μg/g. These apparent toxicity thresholds for growth and survival rank among the least sensitive chronic Se toxicity values reported for nonreproductive endpoints in freshwater fish. Comparisons of these thresholds to surveys of Se concentrations in the Imperial Valley suggest that risks of Se toxicity are low in pupfish habitats. The dietary threshold was about twice as high as the greatest mean Se concentrations reported in midge larvae from seven sites in the Imperial Valley. Whole-body thresholds were greater than mean whole-body Se concentrations reported for field-collected pupfish from three sites and for the sailfin molly (Poecilia latipinna), a potential bioaccumulation surrogate for pupfish, from seven sites. Reduced egg production, although highly variable, was the most sensitive response of pupfish to Se exposure. Toxic effects on egg production (reductions of 24–51 percent relative to controls) occurred in the four highest Se treatments, corresponding to reproductive toxicity thresholds of 7.3 μg/g for Se in diet, 3.4 μg/g in pupfish (whole body), and 4.4 μg/g in pupfish eggs. These thresholds are substantially lower than published Se toxicity values for reproductive effects in other freshwater fish (for example, 17–24 μg/g in eggs). Reduced egg production has not been reported as a sensitive endpoint in Se toxicity studies, although abnormal ovarian development has been reported in Se-exposed fish, and reduced egg production has been reported as a sensitive response of other Cyprinodon pupfish to other environmental stressors. Selenium concentrations in tissues of pupfish, mollies, and diet items from Imperial Valley sites frequently exceeded concentrations associated with reduced pupfish egg production in the laboratory study. Reduced egg production may limit the ability of pupfish populations to persist and recover in Se-contaminated habitats in the Imperial Valley and elsewhere in their limited range. However, these apparent risks of Se toxicity are not supported by recent surveys of desert pupfish populations in the Imperial Valley. These surveys indicated that desert pupfish made up a small, but variable, component of fish communities in Imperial Valley habitats, including sites with increased levels of Se exposure, and that pupfish distribution and population density indicated no clear relationships with Se concentrations in diets or fish tissues. Additional studies could determine the role of egg production in the maintenance and recovery of desert pupfish populations in Se-contaminated habitats.

Scientific Investigations Report↗

Conceptual models in exploration geochemistry-The Basin and Range Province of the Western United States and Northern Mexico

This summary of geochemical exploration in the Basin and Range Province is another in the series of reviews of geochemical-exploration applications covering a large region; this series began in 1975 with a summary for the Canadian Cordillera and Canadian Shield, and was followed in 1976 by a similar summary for Scandinavia (Norden). Rather than adhering strictly to the type of conceptual models applied in those papers, we have made use of generalized landscape geochemistry models related to the nature of concealment of ore deposits. This study is part of a continuing effort to examine and evaluate geochemical-exploration practices in different areas of the world. Twenty case histories of the application of geochemical exploration in both district and regional settings illustrate recent developments in techniques and approaches. Along with other published reports these case histories, exemplifying generalized models of concealed deposits, provide data used to evaluate geochemical-exploration programs and specific sample media. Because blind deposits are increasingly sought in the Basin and Range Province, the use of new sample media or anomaly-enhancement techniques is a necessity. Analysis of vapors or gases emanating from blind deposits is a promising new technique. Certain fractions of stream sediments show anomalies that are weak or not detected in conventional minus 80-mesh fractions. Multi-element analysis of mineralized bedrock may show zoning patterns that indicate depth or direction of ore. Examples of the application of these and other, more conventional methods are indicated in the case histories. The final section of this paper contains a brief evaluation of the applications of all types of sample media to geochemical exploration in the arid environment of the Basin and Range Province. ?? 1978.

Journal of Geochemical Exploration↗

Regional Aquifer-System Analysis— Appalachian Valley and Piedmont

The Regional Aquifer-System Analysis Program, RASA, represents a systematic effort to study a number of the Nation’s most important aquifer systems, which, in aggregate, underlie much of the country and which represent an important component of the Nation’s total water supply. In general, the boundaries of these studies are identified by the hydrologic extent of each system and, accordingly, transcend the political subdivisions to which investigations have often arbitrarily been limited in the past. The broad objective for each study is to assemble geologic, hydrologic, and geochemical information, to analyze and develop an understanding of the system, and to develop predictive capabilities that will contribute to the effective management of the system. The use of computer simulation is an important element of the RASA studies to develop an understanding of the natural, undisturbed hydrologic system and the changes brought about in it by human activities and to provide a means of predicting the regional effects of future pumping or other stresses. The final interpretive results of the RASA Program are presented in a series of U.S. Geological Survey Professional Papers that describe the geology, hydrology, and geochemistry of each regional aquifer system. Each study within the RASA Program is assigned a single Professional Paper number beginning with Professional Paper 1400. This paper, Professional Paper 1422, represents the Regional Aquifer-System Analysis— Appalachian Valley and Piedmont. It is published as several individual volumes over several years.

Professional Paper↗

Three-dimensional imaging, change detection, and stability assessment during the centerline trench levee seepage experiment using terrestrial light detection and ranging technology, Twitchell Island, California, 2012

A full scale field seepage test was conducted on a north-south trending levee segment of a now bypassed old meander belt on Twitchell Island, California, to understand the effects of live and decaying root systems on levee seepage and slope stability. The field test in May 2012 was centered on a north-south trench with two segments: a shorter control segment and a longer seepage test segment. The complete length of the trench area measured 40.4 meters (m) near the levee centerline with mature trees located on the waterside and landside of the levee flanks. The levee was instrumented with piezometers and tensiometers to measure positive and negative porewater pressures across the levee after the trench was flooded with water and held at a constant hydraulic head during the seepage test—the results from this component of the experiment are not discussed in this report. We collected more than one billion three-dimensional light detection and ranging (lidar) data points before, during, and after the centerline seepage test to assess centimeter-scale stability of the two trees and the levee crown. During the seepage test, the waterside tree toppled (rotated 20.7 degrees) into the water. The landside tree rotated away from the levee by 5 centimeters (cm) at a height of 2 m on the tree. The paved surface of the levee crown had three regions that showed subsidence on the waterside of the trench—discussed as the northern, central, and southern features. The northern feature is an elongate region that subsided 2.1 cm over an area with an average width of 1.35 m that extends 15.8 m parallel to the trench from the northern end of the trench to just north of the trench midpoint, and is associated with a crack 1 cm in height that formed during the seepage test on the trench wall. The central subsidence feature is a semicircular region on the waterside of the trench that subsided by as much as 6.2 cm over an area 3.4 m wide and 11.2 m long. The southern feature is an elongate region that has a maximum subsidence of 3.5 cm over an area 0.75 m wide and 8.1 m long and is associated with a number of small fractures in the pavement that are predominately north-south-trending and parallel to the trench. We determined that there was no significant motion of the levee flank during the last week of the seepage test. We also determined biomorphic parameters for the landside tree, such as the 3D positioning on the levee, tree height, levee parallel/perpendicular cross sectional area, and canopy centroid. These biomorphic parameters were requested to support a University of California Berkeley team studying seepage and stability on the levee. A gridded, 2-cm bare-earth digital elevation model of the levee crown and the landside levee flank from the final terrestrial lidar (T-Lidar) survey provided detailed topographic data for future assessment. Because the T-Lidar was not integrated into the project design, other than an initial courtesy dataset to help characterize the levee surface, our ability to contribute to the overall science goals of the seepage test was limited. Therefore, our analysis focused on developing data collection and processing methodology necessary to align ultra high-resolution T-Lidar data (with an average spot spacing 2–3 millimeters on the levee crown) from several instrument setup locations to detect, measure, and characterize dynamic centimeter-scale deformation and surface changes during the seepage test.

California↗

Comprehensive inventory of habitat assessment and evaluation datasets to support Deepwater Horizon mesophotic and deep benthic communities

This report is part of the NOAA Mesophotic and Deep Benthic Communities (MDBC) Series of publications that share the results of work conducted by the Deepwater Horizon MDBC restoration projects. The 2010 Deepwater Horizon oil spill was an unprecedented event. Approximately 3.2 million barrels of oil were released into the deep ocean over nearly three months. The plume of oil moved throughout the water column, formed surface slicks that cumulatively covered an area the size of Virginia, and washed oil onto at least 1,300 miles of shoreline habitats. More than 770 square miles (2,000 square kilometers) of deep benthic habitat surrounding the Deepwater Horizon wellhead and 4-square miles of the Pinnacles mesophotic reef complex, located at the edge of the continental shelf, were injured by the oil spill. Under the Oil Pollution Act, state and federal natural resource trustees conducted a Natural Resource Damage Assessment (NRDA). The Trustees assessed damages, quantifying the unprecedented injuries to natural resources and lost services. They also developed a programmatic restoration plan to restore injured resources and compensate the public for lost services. In April 2016, a settlement was finalized that included up to $8.8 billion in funding for the Deepwater Horizon Trustees to restore the natural resource injuries caused by the oil spill as described in their programmatic restoration plan, Final Programmatic Damage Assessment and Restoration Plan and Final Programmatic Environmental Impact Statement. The Deepwater Horizon Open Ocean Trustee Implementation Group is responsible for restoring natural resources and their services within the Open Ocean Restoration Area that were injured by the oil spill. The Open Ocean Trustees include NOAA, Department of the Interior, U.S. Environmental Protection Agency, and U.S. Department of Agriculture. In 2019, the Open Ocean Trustee Implementation Group committed more than $126 million to implement four restoration projects to address the injury to MDBC. The MDBC projects are: mapping, Ground-truthing, and Predictive Habitat Modeling; Habitat Assessment and Evaluation; Coral Propagation Technique Development; and Active Management and Protection. NOAA and the Department of the Interior are implementing the projects, in cooperation with a range of partners, over eight years. Together, the projects take a phased approach to meet the challenges involved in restoring deep-sea habitats. Challenges to restoration include a limited scientific understanding of these communities, limited experience with restoration at the depths at which these communities occur, and remote locations that limit accessibility. More information about Deepwater Horizon restoration and the MDBC restoration projects is available at: www.gulfspillrestoration.noaa.gov.

Gulf of Mexico↗

Untargeted lipidomics for determining cellular and sub-cellular responses in Zebrafish (Danio rerio) liver cells following exposure to complex mixtures in U.S. streams

Surface waters often contain a variety of chemical contaminants potentially capable of producing adverse outcomes in both humans and wildlife due to impacts from industrial, urban, and agricultural activity. Here, we report the results of a zebrafish liver (ZFL) cell-based lipidomics approach to assess the potential ecotoxicological effects of complex contaminant mixtures using water collected from eight impacted streams across the United States mainland and Puerto Rico. We initially characterized the ZFL lipidome using high resolution mass spectrometry, resulting in the annotation of 508 lipid species covering 27 classes. We then identified lipid changes induced by all streamwater samples (nonspecific stress indicators) as well as those unique to water samples taken from specific streams. Subcellular impacts were classified based on organelle-specific lipid changes, including increased lipid saturation (endoplasmic reticulum stress), elevated bis(monoacylglycero)phosphate (lysosomal overload), decreased ubiquinone (mitochondrial dysfunction), and elevated ether lipids (peroxisomal stress). Finally, we demonstrate how these results can uniquely inform environmental monitoring and risk assessments of surface waters.

Environmental Science & Technology↗

Deep magmatic degassing versus scrubbing: Elevated CO2 emissions and C/S in the lead-up to the 2009 eruption of Redoubt Volcano, Alaska

We report CO 2, SO 2 , and H 2 S emission rates and C/S ratios during the five months leading up to the 2009 eruption of Redoubt Volcano, Alaska. CO 2 emission rates up to 9018 t/d and C/S ratios ≥30 measured in the months prior to the eruption were critical for fully informed forecasting efforts. Observations of ice-melt rates, meltwater discharge, and water chemistry suggest that surface waters represented drainage from surficial, perched reservoirs of condensed magmatic steam and glacial meltwater. These fluids scrubbed only a few hundred tonnes/day of SO 2 , not the >2100 t/d SO 2 expected from degassing of magma in the mid- to upper crust (3–6.5 km), where petrologic analysis shows the final magmatic equilibration occurred. All data are consistent with upflow of a CO 2 -rich magmatic gas for at least 5 months prior to eruption, and minimal scrubbing of SO 2 by near-surface groundwater. The high C/S ratios observed could reflect bulk degassing of mid-crustal magma followed by nearly complete loss of SO 2 in a deep magmatic-hydrothermal system. Alternatively, high C/S ratios could be attributed to decompressional degassing of low silica andesitic magma that intruded into the mid-crust in the 5 months prior to eruption, thereby mobilizing the pre-existing high silica andesite magma or mush in this region. The latter scenario is supported by several lines of evidence, including deep long-period earthquakes (−28 to −32 km) prior to and during the eruption, and far-field deformation following the onset of eruptive activity.

Alaska↗

Leisure boat harbours, hidden alien species, and pollution: A case study of Hinsholmskilen harbour (Gothenburg, Sweden)

Small leisure boat harbours have important aesthetic and recreational values in any country with a coastline. In Sweden, there are about 860 000 leisure boats, which is one of the world's highest numbers in relation to the country's population. However, small boat harbours also present a wide range of environmental problems, including the introduction of alien species and high pollution. In this study, we investigated the ecological quality status (EcoQS) of the Hinsholmskilen small boat harbour, located southwest of the city of Gothenburg (Sweden). We performed a reconnaissance survey of the harbour's previously unstudied benthic foraminiferal communities and analysed surface sediment (0–2 cm) samples for potentially toxic elements: copper (Cu), zinc (Zn), lead (Pb), cobalt (Co), nickel (Ni), chromium (Cr), mercury (Hg), and arsenic (As). The results show that, based on the total benthic foraminiferal distribution (dead and live specimens), the assemblages in Hinsholmskilen harbour represent a typical European estuarine community with highly abundant Ammonia and Elphidium species. Based on molecular and morphological data, we report the presence of two alien and putatively invasive species likely originating from Asia: Trochammina hadai and Ammonia confertitesta (phylotype T6). Both species have recently been identified elsewhere on the Swedish west coast based on molecular and morphological data but do not have a well-known distribution. The sediment analysis for potentially toxic elements showed that the harbour has good to high EcoQS corresponding to no or little deviation from reference conditions for Cd, Co, Ni, and Pb distribution. Some of the contaminants (Pb, As, Zn, and Cr) showed poor to bad EcoQS in the innermost harbour in proximity to high-pressure cleaning plants, where boats are usually lifted, cleaned, and prepared for winter storage on land. Finally, Cu and Hg showed consistently bad and poor EcoQS all over the harbour, reflecting the use of both metals as biocides in antifouling boat paints.

Gothenburg↗

Summary report of responses of key resources to the 2000 Low Steady Summer Flow experiment, along the Colorado River downstream from Glen Canyon Dam, Arizona

In the spring and summer of 2000, a series of steady discharges of water from Glen Canyon Dam on the Colorado River were used to evaluate the effects of aquatic habitat stability and water temperatures on native fish growth and survival, with a special focus on the endangered humpback chub (Gila cypha), downstream from the dam in Grand Canyon. The steady releases were bracketed by peak powerplant releases in late-May and early-September. The duration and volume of releases from the dam varied between spring and summer. The intent of the experimental hydrograph was to mimic predam river discharge patterns by including a high, steady discharge in the spring and a low, steady discharge in the summer. The hydrologic experiment was called the Low Steady Summer Flow (LSSF) experiment because steady discharges of 226 m3/s dominated the hydrograph for 4 months from June through September 2000. The experimental hydrograph was developed in response to one of the U.S. Fish and Wildlife Service's Recommended and Prudent Alternatives (RPA) in its Biological Opinion of the Operation of Glen Canyon Dam Final Environmental Impact Statement. The RPA focused on the hypothesis that seasonally adjusted steady flows were dam operations that might benefit humpback chub more than the Record of Decision operations, known as Modified Low Fluctuating Flow (MLFF) operations. Condensed timelines between planning and implementation (2 months) of the experiment and the time required for logistics, purchasing, and contracting resulted in limited data collection during the high-release part of the experiment that occurred in spring. The LSSF experiment is the longest planned hydrograph that departed from the MLFF operations since Record of Decision operations began in 1996. As part of the experiment, several studies focused on the responses of physical properties related to environments that young-of-year (YOY) native fish might occupy (for example, measuring mainstem and shoreline water temperature, and quantifying useable shorelines). The part of the hydrograph that included a habitat maintenance flow (a 4-day spike at a powerplant capacity of 877 m3/s) and sustained high releases in April and May (averaging 509 m3/s) resulted in sediment export to Lake Mead, the reservoir downstream from Glen Canyon Dam, which is outside the study area. Some mid-elevation sandbar building (between 566 and 877 m3/s stage elevations) occurred from existing sediment deposits rather than from sediment inputs from tributaries during the previous winter. Low releases in the summer combined with low tributary sediment inputs resulted in minor sediment accumulation in the study area. The September habitat maintenance flow reworked accumulated sediment and resulted in increases in the area of some backwaters. The mainstem water temperatures in the reach near the Little Colorado River during the LSSF experiment varied little from previous years. Mainstem water temperatures in western Grand Canyon average 17 to 20 degrees C. During the LSSF, backwaters warmed more than other shoreline environments during the day, but most backwaters returned to mainstem water temperatures overnight. Shoreline surface water temperatures from river mile (RM) 30 to 72 varied between 9 and 28 degrees C in the middle of the day in July. These temperatures are within the optimal temperature range for humpback chub growth and spawning, which is between 15 and 24 degrees C. How surface water temperatures transfer to subsurface water temperatures is unknown. Data collection associated with the response of fish to the 2000 LSSF hydrograph focused on fish growth and abundance along the Colorado River in Grand Canyon. The target resource, humpback chub and other native fishes, did not respond in a strongly positive or strongly negative manner to the LSSF hydrograph during the sampling period, which extended from June to September 2000. In 2000, the mean total length of YOY native fishes was similar to the mean

Arizona↗

Comparison of two approaches for determining ground-water discharge and pumpage in the lower Arkansas River Basin, Colorado, 1997-98

In March 1994, the Colorado Division of Water Resources (CDWR) adopted “Rules Governing the Measurement of Tributary Ground Water Diversions Located in the Arkansas River Basin” (Office of the State Engineer, 1994); these initial rules were amended in February 1996 (Office of the State Engineer, 1996). The amended rules require users of wells that divert tributary ground water to annually report the water pumped monthly by each well. The rules allow a well owner to report the pumpage measured by a totalizing flowmeter (TFM) or pumpage determined from electrical power data and a power conversion coefficient (PCC) (Hurr and Litke, 1989). Opinions by representatives of the State of Kansas, presented before the Special Master hearing a court case [State of Kansas v. State of Colorado, No. 105 Original (1996)] concerning post-Compact well pumping, stated that the PCC approach does not provide the same level of accuracy and reliability as a TFM when used to determine pumpage. In 1997, the U.S. Geological Survey (USGS), in cooperation with the CDWR, began a 2-year study to compare ground-water pumpage estimates made using the TFM and the PCC approaches. The study area was along the Arkansas River between Pueblo, Colorado, and the Colorado-Kansas State line (fig. 1). The two approaches for estimating ground-water discharge and pumpage were compared for more than 100 wells completed in the alluvial aquifer of the Arkansas River Basin. The TFM approach uses an inline flowmeter to directly measure instantaneous discharge and the total volume of water pumped at a well. The PCC approach uses electrical power consumption records and a power conversion coefficient to estimate the pumpage at ground-water wells. This executive summary describes the results of the comparison of the two approaches. Specifically, (1) the differences in instantaneous discharge measured with three portable flowmeters and measured with an inline TFM are evaluated, and the statistical differences in paired instantaneous discharge between the two approaches are determined; (2) short- and long-term variations in the PCC’s are presented; (3) differences in pumpage between the two approaches are evaluated, and the statistical differences in pumpage between the two approaches are determined; (4) potential sources of discrepancy between pumpage estimates are discussed; and (5) differences in total network pumpage using the two approaches are presented. During the irrigation seasons of 1997 and 1998, instantaneous discharge and electrical power demand were measured at randomly selected wells to determine PCC’s. At more than 100 wells, the PCC’s determined during the 1998 season were applied to total electrical power consumption data that was recorded between the initial and final readings at each network well site in 1998 to estimate total ground-water pumpage. At each site, an inline TFM was installed in a full-flowing, acceptable test section of pipe on the discharge side of the pump where the measurement of discharge was made. Measurements of instantaneous ground-water discharge also were made using three different types of portable flowmeters. The average velocity multiplied by the cross-sectional area of the discharge pipe was used to compute the discharge in gallons per minute. Whenever possible, discharge measurements were made at each network site using all three types of portable flowmeters.

Colorado↗

Formation and resulfidization of a South Texas roll-type uranium deposit

Core samples from a roll type uranium deposit in Live Oak County, south Texas have been studied and results are reported for Se, Mo, FeS2 and organic-carbon distribution, sulfide mineral petrology, and sulfur isotopic composition of iron-disulfide phases. In addition, sulfur isotopic compositions of dissolved sulfate and sulfide from the modern ground water within the ore bearing sand have been studied. The suite of elements in the ore sand and their geometric relationships throughout the deposit are those expected for typical roll-type deposits with well-developed oxidation-reduction interfaces. However, iron-disulfide minerals are abundant in the altered tongue, demonstrating that this interval has been sulfidized after mineralization (resulfidized or rereduced). Iron disulfide minerals in the rereduced interval differ mineralogically and isotopically from those throughout the remainder of the deposit. The resulfidized sand contains dominantly pyrite that is enriched in 34S, whereas the sand beyond the altered tongue contains abundant marcasite that is enriched in the light isotope, 32S. Textural relationships between pyrite and marcasite help to establish relative timing of iron disulfide formation. In reduced rock outside the altered tongue, three distinct generations of iron disulfide are present. The oldest of these generations consists largely of pyrite with lesser amounts of marcasite. A major episode of marcasite formation contemporaneous with ore genesis postdates the oldest pyrite generation but predates a younger pyrite generation. Resulfidization probably led to the final pyrite stage recognized beyond the altered tongue. Stable isotope data establish that the source of sulfur for the resulfidization was fault-leaked H2S probably derived from the Edwards Limestone of Cretaceous age which underlies the deposit. The deposit formed in at least two stages: (1) a pre-ore process of host rock sulfidization which produced disseminated pyrite as the dominant iron disulfide phase; and (2) an ore-stage process which led to the development of the uranium roll with emplacement of the characteristic suite of minor and accessory elements and which produced abundant isotopically light marcasite. The host rock was modified by a post-ore stage of resulfidization which precipitated isotopically heavy pyrite. Sulfur isotopic compositions of sulfide and sulfate present in modern ground water within the host sand differ greatly from sulfur isotopic composition of iron disulfides formed during the resulfidization episode. Iron disulfide minerals formed from the sulfur species of modern ground water have not been unequivocally identified.

Open-File Report↗

Drilling, construction, and testing of water-supply wells 21 and 22, White Sands Missle Range, Dona Ana County, New Mexico

During the spring and summer of 1976, two municipal-supply wells (designated as well 21 and well 22 - 2,000 feet apart) were drilled at the Post Headquarters area of White Sands Missile Range, New Mexico. The design specifications for both wells called for 24-inch diameter surface casing cemented in place to a depth of about 430 feet, with 16-inch liner and slotted casing from the surface to a depth of about 700 feet. Each well was pumped continuously for 32 hours in a step-drawdown test. This test consisted of four steps, with discharge rates varying from about 500 to 1,150 gallons per minute. The drawdown test for well 21 gave an estimated transmissivity of 17,300 gallons per day per foot, and a final specific capacity of slightly less than 11 gallons per minute per foot of drawdown. The step-drawdown test and later drawdown and recovery test on well 22 gave an average transmissivity of 32,600 gallons per day per foot, and a final specific capacity of about 15 gallons per minute per foot of drawdown. The data collected indicated that the aquifer in the vicinity of well 22 is more permeable than the aquifer around well 21. Both wells furnish a satisfactory quantity of excellent-quality water. The dissolved-solids content of water from wells 21 and 22 is 232 and 301 mg/liter respectively. (Woodard-USGS)

Open-File Report↗

Assessment of habitat availability for juvenile Chinook salmon (Oncorhynchus tshawytscha) and steelhead (O. mykiss) in the Willamette River, Oregon

The Willamette River, Oregon, is home to two salmonid species listed as threatened under the Endangered Species Act, Upper WIllamette River spring Chinook salmon ( Oncorhynchus tshawytscha ) and Upper Willamette River winter steelhead ( O. mykiss ). Streamflow in the Willamette River is regulated by upstream dams, 13 of which are operated by the U.S. Army Corps of Engineers (USACE) as part of the Willamette Valley Project. In 2008, these dams were determined to have a deleterious effect on Endangered Species Act-listed salmonids, resulting in USACE taking actions to mitigate those effects. Mitigation actions included setting seasonal streamflow targets at various locations along the river to improve survival and migration of juvenile salmonids. Although these targets were established with the best available information at the time, recent data and models have advanced understanding of Willamette River bathymetric, hydraulic, and thermal conditions, allowing for a more robust analysis of the effect of streamflow on downstream habitat. This study integrates those recent advances to build high-resolution models of usable habitat for juvenile Chinook salmon and steelhead to assess variation in spatial and seasonal patterns of habitat availability. Specifically, this study develops detailed maps of habitat availability for juvenile Chinook salmon and steelhead for two size classes (fry and pre-smolt). Habitat availability is modeled in a three-step process whereby (1) two-dimensional hydraulic models are paired with literature-supplied data on habitat preferences to create spatially explicit maps of rearing habitats for a wide range of streamflows; (2) reach-specific relations between streamflow and habitat area are developed and paired with streamgage records to create habitat time series for 2011, 2015, and 2016, which reflect “cool and wet,” “hot and dry,” and “warm but average precipitation” conditions, respectively; (3) temperature models are coupled with literature-based thermal thresholds to determine time periods and locations along the river corridor when rearing habitat has optimal, harmful, or lethal temperature conditions; (4) finally, habitat availability is summarized at several spatial scales to characterize longitudinal and seasonal patterns. Findings show that modeled area of rearing habitat for Chinook salmon and steelhead responds non-uniformly to streamflow, where habitat in some reaches of the Willamette River consistently increase with additional streamflow, while in other reaches, habitat area decreases when streamflows increase from low to moderate flows. Modeled differences in flow-habitat relations are primarily explained by local geomorphology in each reach and resulting hydraulic conditions that arise with different streamflows. These are most pronounced when comparing laterally active, multi-channel reaches upstream from Corvallis with downstream reaches that are laterally stable with single-channel planforms. The reaches upstream from Corvallis generally have more habitat available per unit stream distance than downstream reaches, but all reaches display greatest amounts of habitat at the highest streamflows. Finally, results show that warm water temperature in summer greatly decreases the utility of habitat available to the focal species, particularly downstream from Corvallis. Together, these findings serve to inform flow management by characterizing spatial and seasonal patterns of habitat availability for juvenile spring Chinook salmon and winter steelhead and provide a quantitative assessment of the effects of streamflow on rearing habitat.

Oregon↗

Long-term on-site and off-site effects of logging and erosion in the Redwood Creek basin, northern California

For nearly 15 years, the Redwood Creek Watershed in north coastal California has been the focus of both U.S. Geological Survey (USGS) and National Park Service (NPS) studies designed to document and quantify the nature of erosion, sedimentation and sediment transport processes active in the basin. While none of these studies were specifically designed to assess possible cumulative effects resulting from land use, we can demonstrate, by synthesizing a number of study findings throughout the watershed, that some land use practices do result in long-term and persistent changes to hillslopes and stream channels. For this discussion, "Cumulative Effects" are viewed as multiple, persistent impacts which are separated in either space or time from the original land use disturbance. Although each incremental disturbance may have an insignificant effect when viewed alone, the impacts may become cumulatively significant when seen in aggregate or when multiple erosion sources are triggered simultaneously by a large storm. For example, an undersized culvert which becomes plugged of whose capacity is exceeded by storm runoff can cause erosion at the site where it is installed as all or part of the fill crossing is washed out. In addition, streamflow can be diverted from the channel and cause considerable erosion in downslope areas where gullies will form, and in far removed fish-bearing streams where the sediment is finally deposited. In addition to being spatially displaced from its source, the effect may also be delayed in time. The undersized culvert may not plug or its capacity be exceeded for many years, and the resultant erosion and sedimentation may not occur for decades after the original disturbance. An entire road network, which is not being permanently maintained or whose culverts have been underdesigned, may not reveal significant erosional impacts from road construction until a major storm cause widespread culvert failure, stream crossing erosion and stream diversions. The effects of land use are then additive, occur essentially instantaneously over large areas, and are displaced both spatially and temporally from their source and time of initiation. The objective of this brief report is to describe how specific land use practices can cause multiple on-site and off-site geomorphic impacts which may become obvious only years following the land use disturbance. Additionally, we will briefly outline how a large percentage of these persistent effects can be avoided entirely by minor changes in road construction techniques.

California↗