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At least 1,243 records · Page 69Linked to original sources
USGS2003

Regional sediment budget of the Columbia River littoral cell, USA: Analysis of bathymetric- and topographic-volume change

In this Open-File Report we present calculations of changes in bathymetric and topographic volumes for the Grays Harbor, Willapa Bay, and Columbia River entrances and the adjacent coasts of North Beach, Grayland Plains, Long Beach, and Clatsop Plains for four intervals: pre-jetty - 1920s (Interval 1), 1920s - 1950s (Interval 2), 1950s - 1990s (Interval 3), and 1920s 1990s (Interval 4). This analysis is part of the Southwest Washington Coastal Erosion Study (SWCES), the goals of which are to understand and predict the morphologic behavior of the Columbia River littoral cell on a management scale of tens of kilometers and decades. We obtain topographic Light Detection and Ranging (LIDAR) data from a joint project by the U.S. Geological Survey (USGS), National Oceanic and Atmospheric Administration (NOAA), National Aeronautic and Space Administration (NASA), and the Washington State Department of Ecology (DOE) and bathymetric data from the U.S. Coast and Geodetic Survey (USC&GS), U.S. Army Corps of Engineers (USACE), USGS, and the DOE. Shoreline data are digitized from T-Sheets and aerial photographs from the USC&GS and National Ocean Service (NOS). Instead of uncritically adjusting each survey to NAVD88, a common vertical land-based datum, we adjust some surveys to produce optimal results according to the following criteria. First, we minimize offsets in overlapping surveys within the same era, and second, we minimize bathymetric changes (relative to the 1990s) in deep water, where we assume minimal change has taken place. We grid bathymetric and topographic datasets using kriging and triangulation algorithms, calculate bathymetric-change surfaces for each interval, and calculate volume changes within polygons that are overlaid on the bathymetric-change surfaces. We find similar morphologic changes near the entrances to Grays Harbor and the Columbia River following jetty construction between 1898 and 1916 at the Grays Harbor entrance and between 1885 and 1913 at the Columbia River entrance. The inlets and inner deltas eroded and the outer deltas moved offshore and accreted. The adjacent coasts experienced accretion over alongshore distances of tens of kilometers. North of the Grays Harbor entrance along North Beach and north of the Columbia River entrance along Long Beach the shoreface and the beach-dune complex mainly prograded, whereas south of the Grays Harbor entrance along Grayland Plains and south of the Columbia River entrance along Clatsop Plains the beach-dune complex above -10 m NAVD88 prograded and the shoreface between approximately -30 m and -10 m NAVD88 eroded. In the decades following jetty construction, the rates of erosion and accretion at the entrances decreased and the centers of deposition along the adjacent coasts moved away from the entrances. The rates of change have decreased, suggesting the systems are approaching dynamic equilibrium. Exceptions to this behaviour are the accretion of the beach-dune complex of Long Beach, the erosion of Cape Shoalwater, and the northward migration of the Willapa Bay ebb-tidal delta during all intervals. The net shoreline advance of Long Beach increases from 0.28 m/yr in pre-jetty conditions to 3.78 m/yr during Interval 4. The erosion of Cape Shoalwater and the northward migration of the Willapa Bay ebb-tidal delta are related to the northern migration of the Willapa Bay North Channel. Volume changes at the Grays Harbor, Willapa Bay, and Columbia River entrances and the Columbia River estuary are balanced against losses and gains due to littoral transport and sand supply from the Columbia River. Based on these sediment balances, we infer the following pathways: sand that eroded from the inlets and inner deltas at the Grays Harbor and Columbia River entrances moved offshore and northward to accrete the outer deltas and the beaches to the north; sand from the south flank of the Grays Harbor delta and shelf along Grayland Plains moved onshore to accrete the beach dune complex of Grayland Plains and moved northward to maintain accretion of the outer delta and the beach-dune complex of North Beach; sand that eroded from the south flank of the Columbia River delta and shelf along Clatsop Plains contributed to the accretion of the beach-dune complex of Clatsop Plains and the Columbia River outer delta. The net volume change for Interval 1 and 3 at the Grays Harbor entrance and for Interval 1 at the Columbia River entrance is erosion, whereas the net change for the other intervals is accretion. For the entire CRLC, there is a net loss of 185 Mm 3 for Interval 1, a net gain of 357 Mm 3 for Interval 2, and a net gain of 187 Mm 3 for Interval 3. These imbalances can be the result of incomplete bathymetric coverage of the bays and shoreface, uncertainties in the adjustments of vertical tidal datums, inconsistencies in the bathymetric data, and uncertainties in the sediment supply of the Columbia River.

Oregon, Washington↗
USGS2010

Hydrology and Ecology of Freshwater Wetlands in Central Florida - A Primer

Freshwater wetlands are an integral part of central Florida, where thousands are distributed across the landscape. However, their relatively small size and vast numbers challenge efforts to characterize them collectively as a statewide water resource. Wetlands are a dominant landscape feature in Florida; in 1996, an estimated 11.4 million acres of wetlands occupied 29 percent of the area of the State. Wetlands represent a greater percentage of the land surface in Florida than in any other state in the conterminous United States. Statewide, 90 percent of the total wetland area is freshwater wetlands and 10 percent is coastal wetlands. About 55 percent of the freshwater wetlands in Florida are forested, 25 percent are marshes and emergent wetlands, 18 percent are scrub-shrub wetlands, and the remaining 2 percent are freshwater ponds. Freshwater wetlands are distributed differently in central Florida than in other parts of the State. In the panhandle and in northern Florida, there are fewer isolated wetlands than in the central and southern parts of the State, and few of those wetlands are affected by activities such as groundwater withdrawals. In southern Florida, the vast wetlands of the Everglades and the Big Cypress Swamp blanket the landscape and form contiguous shallow expanses of water, which often exhibit slow but continuous flow toward the southwestern coast. In contrast, the wetlands of central Florida are relatively small, numerous, mostly isolated, and widely distributed. In many places, wetlands are flanked by uplands, generating a mosaic of contrasting environments-unique wildlife habitat often adjacent to dense human development. As the population of central Florida increases, the number of residents living near wetlands also increases. Living in close proximity to wetlands provides many Floridians with an increased awareness of nature and an opportunity to examine the relationship between people and wetlands. Specifically, these residents can observe how wetlands are affected by human activities. Freshwater wetlands are unique and complex ecosystems defined by characteristic properties. Wetlands usually have standing water during at least part of the year, although water depths can vary from a few inches to as much as several feet from one wetland to another. The hydrologic behavior of wetlands is influenced by drainage basin characteristics, as well as by natural variations in climate. Wetlands in central Florida (especially forested wetlands) often have acidic waters that are darkly stained from organic substances released by decomposing leaves and other plant material. Wetlands are characterized by biogeochemical cycles in which vital elements such as carbon, nitrogen, phosphorus, and others are transformed as they move between wetland soils and sediments, the open water, and the atmosphere. Wetlands are populated with plants that can thrive under conditions of saturated soils and low dissolved-oxygen concentrations. The bottoms of many wetlands, especially marshes, are covered with decayed plant material that can accumulate over time to form brown peat or black muck soils. Wetlands are inhabited by animals that need standing water to complete some or all of their life cycles, and they also provide periodic food, water, and shelter for many other animals that spend most of their lives on dry land. The complex and interrelated components of wetlands directly affect one another and there are numerous feedback mechanisms.

Circular↗
USGS2006

The importance of diverse data types to calibrate a watershed model of the Trout Lake Basin, Northern Wisconsin, USA

As part of the USGS Water, Energy, and Biogeochemical Budgets project and the NSF Long-Term Ecological Research work, a parameter estimation code was used to calibrate a deterministic groundwater flow model of the Trout Lake Basin in northern Wisconsin. Observations included traditional calibration targets (head, lake stage, and baseflow observations) as well as unconventional targets such as groundwater flows to and from lakes, depth of a lake water plume, and time of travel. The unconventional data types were important for parameter estimation convergence and allowed the development of a more detailed parameterization capable of resolving model objectives with well-constrained parameter values. Independent estimates of groundwater inflow to lakes were most important for constraining lakebed leakance and the depth of the lake water plume was important for determining hydraulic conductivity and conceptual aquifer layering. The most important target overall, however, was a conventional regional baseflow target that led to correct distribution of flow between sub-basins and the regional system during model calibration. The use of an automated parameter estimation code: (1) facilitated the calibration process by providing a quantitative assessment of the model's ability to match disparate observed data types; and (2) allowed assessment of the influence of observed targets on the calibration process. The model calibration required the use of a 'universal' parameter estimation code in order to include all types of observations in the objective function. The methods described in this paper help address issues of watershed complexity and non-uniqueness common to deterministic watershed models. ?? 2005 Elsevier B.V. All rights reserved.

Journal of Hydrology↗
USGS2007

Does species diversity limit productivity in natural grassland communities?

Theoretical analyses and experimental studies of synthesized assemblages indicate that under particular circumstances species diversity can enhance community productivity through niche complementarity. It remains unclear whether this process has important effects in mature natural ecosystems where competitive feedbacks and complex environmental influences affect diversity-productivity relationships. In this study, we evaluated diversity-productivity relationships while statistically controlling for environmental influences in 12 natural grassland ecosystems. Because diversity-productivity relationships are conspicuously nonlinear, we developed a nonlinear structural equation modeling (SEM) methodology to separate the effects of diversity on productivity from the effects of productivity on diversity. Meta-analysis was used to summarize the SEM findings across studies. While competitive effects were readily detected, enhancement of production by diversity was not. These results suggest that the influence of small-scale diversity on productivity in mature natural systems is a weak force, both in absolute terms and relative to the effects of other controls on productivity. ?? 2007 Blackwell Publishing Ltd/CNRS.

Ecology Letters↗
USGS1994

Instrumentation, methods, and preliminary evaluation of evapotranspiration for a grassland in the Arid Lands Ecology Reserve, Benton County, Washington, May-October 1990

The report describes instrumentation, methods, and preliminary results for a study on evapo- transpiration at a grassland in Snively Basin of the Arid Lands Ecology Reserve. Instrumentation was used to collect data from May 30 to October 15, 1990. A combination of the Bowen-ratio and Penman-Monteith methods was used to calculate estimates of evapotranspiration. The Bowen-ratio method could be used to calculate estimates of latent-heat flux and evapotranspiration during only parts of the study period. Latent-heat flux values obtained during these periods were used in the Penman-Monteith method to estimate the canopy resistance. These canopy resistances were averaged for each day and the average values were used to recalculate the laten-heat flux for all periods using the Penman-Monteith method. The canopy resistance ranged from near zero during periods of rainfall to more than 40,000 seconds per meter during periods of extreme dryness. Evapotranspiration estimates varied during the study period. Daily evapotranspiration ranged from less than 0.1 millimeter on some days in August, September, and October to about 2 milli- meters on June 3 and August 22. Monthly totals of evapotranspiration were as follows: June, 28.2 millimeters; July, 10.5 millimeters; August, 15.0 millimeters; September, 5.3 millimeters; and October 1-15, 1.8 millimeters. Evapotranspiration values given in the report are estimates. Some error, perhaps as low as 25 percent on a daily basis and 4 percent on a monthly total basis, is probably introduced into these estimates through complexities of data collection, data analysis, and canopy-resistance estimation, particularly when evapotranspiration was near zero.

Water-Resources Investigations Report↗
USGS2008

Characteristics of mangrove swamps managed for mosquito control in eastern Florida, USA

Manipulations of the vegetation and hydrology of wetlands for mosquito control are common worldwide, but these modifications may affect vital ecosystem processes. To control mosquitoes in mangrove swamps in eastern Florida, managers have used rotational impoundment management (RIM) as an alternative to the worldwide practice of mosquito ditching. Levees surround RIM swamps, and water is pumped into the impoundment during the summer, a season when natural swamps have low water levels. In the New World, these mosquito-managed swamps resemble the mixed basin type of mangrove swamp (based on PCA analysis). An assessment was made of RIM, natural (control), and breached-RIM (restored) swamps in eastern Florida to compare their structural complexities, soil development, and resistance to invasion. Regarding structural complexity, dominant species composition differed between these swamps; the red mangrove Rhizophora mangle occurred at a higher relative density in RIM and breached-RIM swamps, and the black mangrove Avicennia germinans had a higher relative density in natural swamps. Tree density and canopy cover were higher and tree height lower in RIM swamps than in natural and breached-RIM swamps. Soil organic matter in RIM swamps was twice that in natural or breached-RIM swamps. RIM swamps had a lower resistance to invasion by the Brazilian pepper tree Schinus terebinthifolius , which is likely attributable to the lower porewater salinity in RIM swamps. These characteristics may reflect differences in important ecosystem processes (primary production, trophic structure, nutrient cycling, decomposition). Comparative assessments of managed wetlands are vital for land managers, so that they can make informed decisions compatible with conservation objectives.

Florida↗
USGS1998

Habitat characteristics affecting fish assemblages on a Hawaiian coral reef

Habitat characteristics of a reef were examined as potential influences on fish assemblage structure, using underwater visual census to estimate numbers and biomass of all fishes visible on 42 benthic transects and making quantitative measurements of 13 variables of the corresponding physical habitat and sessile biota. Fish assemblages in the diverse set of benthic habitats were grouped by detrended correspondence analysis, and associated with six major habitat types. Statistical differences were shown between a number of these habitat types for various ensemble variables of the fish assemblages. Overall, both for complete assemblages and for component major trophic and mobility guilds, these variables tended to have higher values where reef substratum was more structurally or topographically complex, and closer to reef edges. When study sites were separately divided into five depth strata, the deeper strata tended to have statistically higher values of ensemble variables for the fish assemblages. Patterns with depth varied among the various trophic and mobility guilds. Multiple linear regression models indicated that for the complete assemblages and for most trophic and mobility guilds, a large part of the variability for most ensemble variables was explained by measures of holes in the substratum, with important contributions from measured substratum rugosity and depth. A strong linear relationship found by regression of mean fish length on mean volume of holes in the reef surface emphasized the importance of shelter for fish assemblages. Results of this study may have practical applications in designing reserve areas as well as theoretical value in helping to explain the organization of reef fish assemblages.

Journal of Experimental Marine Biology and Ecology↗
USGS2023

Sediment transport in two tributaries to the San Joaquin River immediately below Friant Dam—Cottonwood Creek and Little Dry Creek, California

Two tributaries to the greater San Joaquin River watershed, Cottonwood and Little Dry Creeks, in California’s Central Valley, were assessed for sediment and streamflow dynamics between October 1, 2011, and September 30, 2019. The two systems deliver sediment to the San Joaquin River below Friant Dam, California. Dams create downstream discontinuities in streamflow and sediment transport and therefore influence fish habitat and sediment dynamics. Because these two creeks are directly downriver from Friant Dam, they become the most upstream source of sediment to the San Joaquin River below Friant Dam. The quality and quantity of spawning habitat for fish in the gravel-bedded reach of the San Joaquin River relies on a range of bed material particle size suitable for redd structure. The effects of coarse-sand to fine-gravel supply on salmonid habitat depends primarily on the size of the sediment and the timing of its addition from tributaries to the San Joaquin River; thus, understanding the timing, quantity, and size of sediment supplied from these two tributaries is critical to the management of ecological and biological sustainability. Streamflow from Cottonwood and Little Dry Creeks, along with streamflow from the San Joaquin River below Friant Dam, were compared to continuously measured water-surface elevations to quantify the timing and direction of streamflow. Suspended-sediment samples were collected with multiple automatic samplers and analyzed for concentration and grain-size distribution. Measured suspended-sediment concentrations and streamflows were used to develop sediment rating curves and compute continuous estimates of suspended-sediment load for each tributary. Satellite imagery was used to qualify spatial and temporal dynamics through the lower watersheds and support more quantitative sediment-load estimates. Computed annual sediment loads ranged from 1.32x10 1 to 2.68x10 4 metric tons for Little Dry Creek and 9.82 to 1.98x10 3 metric tons for Cottonwood Creek. Sediment loads computed during the study period for both watersheds show that annual loads were highest during water year 2017 (October 1, 2016, to September 30, 2017). Sediment transport primarily occurred between the months of January and March. In both tributaries, grain-size distributions of suspended sediment were predominantly coarse-sized sand and were finer than the remnant bed material. Both creeks demonstrate backwater effects from the San Joaquin River, but the more tortuous stream channel and historical mining pits within Little Dry Creek provide more capacity for sediment storage compared to the less complex stream network of Cottonwood Creek. Because loads were computed based on upstream streamgages and not at the confluence of each tributary to the San Joaquin River, annual load estimates do not represent direct flux into the San Joaquin River; instead, these results indicated that in Little Dry Creek, particularly, the lowest portion of the watershed stores sediment before it reaches the San Joaquin River.

California↗
USGS2016

Sediment budgets, transport, and depositional trends in a large tidal delta

The Sacramento-San Joaquin Delta is the largest delta on the west coast of the United States. It is formed where the confluence of California’s two largest rivers (the Sacramento and San Joaquin) meet the ocean tides and has a significant physical gradient from fluvial to tidal. It is a semidiurnal system (two high and two low tides per day). Today, the Delta is one of the most manipulated in the United States. Once composed of many shallow, meandering and braided dendritic channels and dead-end sloughs and wetlands, it is now a network of leveed canals moving clear water around subsided islands. It historically has supported a biologically diverse tidal wetland complex, of which only 3% remains today (Whipple et al., 2012). It has also witnessed a collapse in the native fish populations. The Delta provides critical habitat for native species, however the hydrology and water quality are complicated by manipulations and diversions to satisfy multiple statewide objectives. Today water managers face co-equal goals of water supply to Californians and maintenance of ecosystem health and function. The Delta is a hub for both a multi-hundred-million dollar agricultural industry and a massive north-to-south water delivery system, supplying the primary source of freshwater to Central Valley farmers and drinking water for two-thirds of California’s population. Large pump facilities support the water demand and draw water from the Delta, further altering circulation patterns and redirecting the net flow toward the export facilities (Monsen et al., 2007). Fluvial sedimentation, along with organic accumulation, creates and sustains the Delta landscape. Hydraulic mining for gold in the watershed during the late 1800s delivered an especially large sediment pulse to the Delta. More recently, from 1955 to the present, a significant sediment decline has been observed that is thought to have been caused mostly by the construction of water storage reservoirs that trap the upstream sediment supply (Wright and Schoellhamer, 2004). Today, one concern is whether the volume of sediment supplied from the upper watershed is sufficient to support ecological function and sustain the Delta landscape and ecosystem in the face of climate change, sea level rise, and proposed restoration associated with the Bay Delta Conservation Plan (http://baydeltaconservationplan.com). Ecosystem health is a management focus and 150,000 acres of restoration is currently proposed, therefore it is of increasingly important to understand the quantity of sediment available for marsh and wetland restoration throughout the Bay Delta Estuary. It is also important to understand the pathways for sediment transport and the sediment budget into each of three Delta regions (figure 1) to guide restoration planning, modeling, and management.

California↗
USGS2017

Gauging resource exploitation by juvenile Chinook salmon (Oncorhynchus tshawytscha) in restoring estuarine habitat

In the context of delta restoration and its impact on salmonid rearing, success is best evaluated based on whether out-migrating juvenile salmon can access and benefit from suitable estuarine habitat. Here, we integrated 3 years of post-restoration monitoring data including habitat availability, invertebrate prey biomass, and juvenile Chinook salmon ( Oncorhynchus tshawytscha ) physiological condition to determine whether individuals profited from the addition of 364 ha of delta habitat in South Puget Sound, Washington, United States. Productivity in the restored mudflat was comparable to reference sites 3 years after dike removal, surpassing a mean total of 6 million kJ energy from invertebrate prey. This resulted from the development of a complex network of tidal channels and a resurgence in dipteran biomass that was unique to the restoration area. Consequently, a notable shift in invertebrate consumption occurred between 2010 and 2011, whereby individuals switched from eating primarily amphipods to dipteran flies; however, dietary similarity to the surrounding habitat did not change from year to year, suggesting that this shift was a result of a change in the surrounding prey communities. Growth rates did not differ between restored and reference sites, but catch weight was positively correlated with prey biomass, where greater prey productivity appeared to offset potential density-dependent effects. These results demonstrate how the realized function of restoring estuarine habitat is functionally dependent. High prey productivity in areas with greater connectivity may support healthy juvenile salmon that are more likely to reach the critical size class for offshore survival.

Washington↗
USGS2024

Geographic distribution of feather δ34S in Europe

Geographic distribution models of environmentally stable isotopes (the so-called “isoscapes”) are widely employed in animal ecology, and wildlife forensics and conservation. However, the application of isoscapes is limited to elements and regions for which the spatial patterns have been estimated. Here, we focused on the ubiquitous yet less commonly used stable sulfur isotopes (δ 34 S). To predict the European δ 34 S isoscape, we used 242 feather samples from Eurasian Reed Warbler ( Acrocephalus scirpaceus ) formed at 69 European wetland sites. We quantified the relationships between sample δ 34 S and environmental covariates using a random forest regression model and applied the model to predict the geographic distribution of δ 34 S. We also quantified within-site variation in δ 34 S and complementarity with other isotopes on both individual and isoscape levels. The predicted feather δ 34 S isoscape shows only slight differences between the central and southern parts of Europe while the coastal regions were most enriched in 34 S. The most important covariates of δ 34 S were distance to coastline, surface elevation, and atmospheric concentrations of SO 2 gases. The absence of a systematic spatial pattern impedes the application of the δ 34 S isoscape, but high complementarity with other isoscapes advocates the combination of multiple isoscapes to increase the precision of animal tracing. Feather δ 34 S compositions showed considerable within-site variation with highest values in inland parts of Europe, likely attributed to wetland anaerobic conditions and redox sensitivity of sulfur. The complex European geography and topography as well as using δ 34 S samples from wetlands may contribute to the absence of a systematic spatial gradient of δ 34 S values in Europe. We thus encourage future studies to focus on the geographic distribution of δ 34 S using tissues from diverse taxa collected in various habitats over large land masses in the world (i.e., Africa, South America, or East Asia).

Ecosphere↗
USGS2005

Surface elevation dynamics in a regenerating mangrove forest at Homebush Bay, Australia

Following the dieback of an interior portion of a mangrove forest at Homebush Bay, Australia, surface elevation tables and feldspar marker horizons were installed in the impacted, intermediate and control forest to measure vertical accretion, elevation change, and shallow subsidence. The objectives of the study were to determine current vertical accretion and elevation change rates as a guide to understanding mangrove dieback, ascertain the factors controlling surface elevation change, and investigate the sustainability of the mangrove forest under estimated sea-level rise conditions. The study demonstrates that the influences on surface dynamics are more complex than soil accretion and soil autocompaction alone. During strong vegetative regrowth in the impacted forest, surface elevation increase exceeded vertical accretion apparently as a result of belowground biomass production. In addition, surface elevation in all forest zones was correlated with total monthly rainfall during a severe El Niño event, highlighting the importance of rainfall to groundwater recharge and surface elevation. Surface elevation increase for all zones exceeded the 85-year sea level trend for Sydney Harbour. Since mean sea-level also decreased during the El Niño event, the decrease in surface elevation did not translate to an increase in inundation frequency or influence the sustainability of the mangrove forest. These findings indicate that subsurface soil processes such as organic matter accumulation and groundwater flux can significantly influence mangrove surface elevation, and contribute to the long-term sustainability of mangrove systems under a scenario of rising sea levels.

Homebush Bay↗
USGS2018

Drivers of chaparral plant diversity

Chaparral diversity has marked spatial and temporal variation. Evolutionary diversity at the genetic, specific, and lineage level contribute to a very diverse flora. Ecological diversity is evident in life histories that comprise a range of physiological and morphological strategies for dealing with drought, and demographic patterns centered around different seedling recruitment strategies. Community or alpha diversity varies markedly through time. Mature chaparral ranges from monotypic stands of chamise ( Adenostoma fasciculatum ) to mixed chaparral often with up to a dozen shrub species. The understory contributes relatively little other than a few diminutive annuals and occasional herbaceous perennial resprouts. However, after fire, diversity increases dramatically and is often dominated by annuals that arise from a dormant seedbank with significant contribution of geophytes resprouting and flowering from dormant bulbs and corms. This flora has very diverse life histories, with some present only a year or two and then existing as a dormant seedbank or bulbs until the next fire. Others may persist much longer, often in gaps in the shrub canopy. Postfire dominance-diversity patterns fit a geometric model as most communities are dominated by a few species and the bulk of the flora comprise subordinates that occupy specific microhabitats. Postfire community assembly is a result of competitive interactions and environmental filtering effects. Beta diversity plays a role in community assembly for as heterogeneity of communities in the landscape increases, the potential species pool for a community increases. Gamma diversity is particularly high because species turnover across latitudinal and elevational gradients is high. The role of diversity in conferring community resilience is complex and a function of the life history of shrub dominants and the historical patterns of fires. Under some circumstances low diversity may be more resilient than high diversity, for example under high fire frequency monotypic stands of Adenostoma fasciculatum may resist change better than diverse stands that include obligate seeding shrubs sensitive to short interval fires. Postfire annuals also are sensitive to short interval fires as these disturbances enhance the invasion by more competitive non-native grasses. Expected increases in anthropogenic ignitions due to population growth are the biggest threat to biodiversity in chaparral.

Book chapter↗
USGS2013

Landscape factors and hydrology influence mercury concentrations in wading birds breeding in the Florida Everglades, USA

The hydrology of wetland ecosystems is a key driver of both mercury (Hg) methylation and waterbird foraging ecology, and hence may play a fundamental role in waterbird exposure and risk to Hg contamination. However, few studies have investigated hydrological factors that influence waterbird Hg exposure. We examined how several landscape-level hydrological variables influenced Hg concentrations in great egret and white ibis adults and chicks in the Florida Everglades. The great egret is a visual “exploiter” species that tolerates lower prey densities and is less sensitive to hydrological conditions than is the white ibis, which is a tactile “searcher” species that pursues higher prey densities in shallow water. Mercury concentrations in adult great egrets were most influenced by the spatial region that they occupied in the Everglades (higher in the southern region); whereas the number of days a site was dry during the previous dry season was the most important factor influencing Hg concentrations in adult ibis (Hg concentrations increased with the number of days dry). In contrast, Hg concentrations in egret chicks were most influenced by calendar date (increasing with date), whereas Hg concentrations in ibis chicks were most influenced by chick age, region, and water recession rate (Hg concentrations decreased with age, were higher in the southern regions, and increased with positive water recession rates). Our results indicate that both recent (preceding two weeks) hydrological conditions, and those of the prior year, influence Hg concentrations in wading birds. Further, these results suggest that Hg exposure in wading birds is driven by complex relationships between wading bird behavior and life stage, landscape hydrologic patterns, and biogeochemical processes.

Florida↗
USGS2017

Urban landscapes can change virus gene flow and evolution in a fragmentation-sensitive carnivore

Urban expansion has widespread impacts on wildlife species globally, including the transmission and emergence of infectious diseases. However, there is almost no information about how urban landscapes shape transmission dynamics in wildlife. Using an innovative phylodynamic approach combining host and pathogen molecular data with landscape characteristics and host traits, we untangle the complex factors that drive transmission networks of Feline Immunodeficiency Virus (FIV) in bobcats ( Lynx rufus ). We found that the urban landscape played a significant role in shaping FIV transmission. Even though bobcats were often trapped within the urban matrix, FIV transmission events were more likely to occur in areas with more natural habitat elements. Urban fragmentation also resulted in lower rates of pathogen evolution, possibly owing to a narrower range of host genotypes in the fragmented area. Combined, our findings show that urban landscapes can have impacts on a pathogen and its evolution in a carnivore living in one of the most fragmented and urban systems in North America. The analytical approach used here can be broadly applied to other host-pathogen systems, including humans.

Molecular Ecology↗
USGS2022

Parasites in kelp-forest food webs increase food-chain length, complexity, and specialization, but reduce connectance

We explored whether parasites are important in kelp forests by examining their effects on a high-quality, high-resolution kelp-forest food web. After controlling for generic effects of network size, parasites affected kelp-forest food web structure in some ways consistent with other systems. Parasites increased the trophic span of the web, increasing top predator vulnerability and the longest chain length. Unique links associated with parasites, such as concomitant predation (consumption of parasites along with their hosts by predators) increased the frequency of network motifs involving mutual consumption and decreased niche contiguity of free-living species. However, parasites also affected kelp-forest food web structure in ways not seen in other systems. Kelp-forest parasites are richer and more specialized than other systems. As a result, parasites reduced diet generality and decreased connectance in the kelp forest. Although mutual consumption motifs increased in frequency, this motif type was still a small fraction of all possible motifs, so their increase in frequency was not enough to compensate for the decrease in connectance caused by adding many specialist parasite species.

California↗
USGS1974

New concepts regarding the production of waterfowl and other game birds in areas of diversified agriculture

Many concepts regarding breeding ecology of waterfowl and the influences of environmental factors on annual production have changed in the past 20 years. These influences are especially pronounced in the prairie region of central North America where agriculture becomes more intensive each year. The principal task assigned to this Research Center when established in 1965 was to determine the relative impact of these influences on production and to identify those facets of breeding biology, nesting habitat requirements and other factors that may be altered to increase production on lands dedicated for this purpose. A corollary objective was to develop methods for enhancing production of waterfowl and other ground-nesting birds on private lands in agricultural areas. Some of the highlights of our findings to date, together with the results from current work of others, provide new information on waterfowl that indicates: (1) homing instincts are not as specific as indicated by earlier workers, (2) there are differences in pioneering between species, sexes and age classes, (3) strength and duration of pair bonds vary by species and age classes, (4) territorial tolerances for most species are greater than previously indicated, (5) there is differential productivity by age classes in some species, (6) there has been a gradual decline in nesting success in the prairie region the past 30 years, (7) adverse influences of intensive agriculture are increasing, (8) mammalian predation is an important factor, (9) high quality, secure nesting habitat and a complex of wetland types are the essential components of an optimum production unit, (10) the size and shape of blocks of nesting cover are important management considerations, (11) overharvest of local breeding populations is becoming a serious problem in some areas. Each of these subjects is discussed as related to research objectives and current management problems. Recommendations are presented for obtaining maximum production of waterfowl and other game birds on public and private lands in agricultural areas.

Book chapter↗
USGS2026

GT-Seq panel development for species identification and parentage analysis of closely related hybridising Scaphirhynchus sturgeons

Hatchery supplementation is vital for conserving dwindling fish populations. Effective augmentation requires distinguishing hatchery-origin from wild individuals and accurately identifying species, particularly in systems where closely related species coexist. Genetic monitoring is key to quantifying genetic differences, but conventional markers do not distinguish hybrids, especially backcrosses. Misidentifying hybrids in hatchery programs compromises wild gene pools because hatchery broodstock contributes to numerous offspring being released into the wild. Here, we present a workflow for developing and evaluating the Genotyping-in-Thousands by sequencing (GT-seq) single nucleotide polymorphism (SNP) panel for North American river sturgeons ( Scaphirhynchus spp.). This panel is designed to detect complex hybrid classes and to determine parent-offspring relationships. Our species identification panel (S-loci) contains 155 SNPs selected for high genetic differentiation (F ST ) between Pallid Sturgeon ( S. albus ) and Shovelnose Sturgeon ( S. platorynchus ), and the parentage assignment panel (P-loci) includes 112 SNPs with high heterozygosity within Pallid Sturgeon. Simulation analyses demonstrated that our GT-seq S-loci panel reliably classifies pure species, F1, F2 and backcross hybrids, even with up to 70% missing data. The P-loci panel achieves high-confidence parentage assignment with ≥ 80% typed loci, with performance influenced by the proportion of sampled parents. Overall, the novel Scaphirhynchus GT-seq panel developed in this study represents a robust and efficient tool for detecting hybridisation, assigning parentage and providing critical information for management decisions in ongoing Pallid Sturgeon conservation.

lower Mississippi River, Missouri River↗