USGS Science⌕ Search

SEARCH · USGS Science

Results for “Biology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,243 records · Page 69Linked to original sources

Persistence of spilled oil on shores and its effects on biota

Over two million tonnes of oil are estimated to enter the world's oceans every year. A small percentage, but still a large volume, of this oil strands onshore, where its persistence is governed primarily by the action of physical forces. In some cases, biota influence the persistence of stranded oil or the rate of its weathering. Oil's deleterious effects on biota are frequently related to the persistence and degree of weathering of the oil, with long-lasting effects in low-energy environments such as salt marshes and coastal mangroves, or in higher-energy environments where oil is sequestered. However, an oil spill can have disproportionately large biological effects when it affects key species or processes (e.g., structurally important species, predators, prey, recruitment, or succession). In these cases, the continuing presence of oil is not always a prerequisite for continuing biological effects. There are relatively few long-term studies of the effects of oil spills; data from these suggest that oil can persist for decades in some environments or situations, and that biological effects can be equally persistent. Broad-based, integrated studies have been the most revealing in terms of the importance of direct and indirect effects, spillover effects between different parts of the environment, and continuing linkages between residual oil and biologic effects. Clean-up and treatment techniques applied to spilled or stranded oil can also have significant, long-lasting effects and need to be carefully evaluated prior to use.

Seas at the millennium - an environmental evaluati↗

Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization: an overview and update

The U.S. Geological Surveys Biological Resources Division (BRD) mission is to provide leadership in gathering, analyzing, and disseminating biological information as support for sound management of the Nation's natural resources. Since becoming operational in October of 1996 through the transfer of programs from various bureaus within the Department of the Interior, the BRD, in cooperation with other Federal, State, and local partners, has begun research, inventory and monitoring, information sharing, and technology transfer. Through these activities, the BRD is fostering an understanding of biological systems and their benefits to society, and providing the essential scientific support and technical assistance required for management and policy decisions. The role of BRD' s National Wetlands Research Center (NWRC) in Lafayette, Louisiana, with project offices in Baton Rouge, LA and Gulf Breeze, FL, is to provide leadership in research and development related to the Nation's natural resources for the Southeast. The research focuses on wetlands ecology, animal ecology, and the development and application of spatial analysis techniques for natural resource related studies. Current geographic information system (GIS) technologies in use at NWRC are designed to provide natural resource managers with the on-line data and computerized techniques necessary to make informed decisions. Major GIS activities at NWRC include: compilation and analysis of digital databases for monitoring of natural resources; integration and transfer of databases with existing digital databases from various sources into a comprehensive GIS; and development of multifunctional decision support systems for natural resource managers using these data. NWRC is also an active participant in the National Information Infrastructure (NIT), in particular the National Spatial Data Infrastructure (NSDI) and the National Biological Information Infrastructure (NBTI), which will facilitate the dissemination of research results and other knowledge and information gained from these efforts. This summary and the three summaries that follow provides an overview and update of a four year study entitled, Northeastern Gulf of Mexico Coastal and Marine Ecosystem Program: Coastal Characterization.

Minerals Management Service↗

Assessment and management of ecological integrity: Chapter 12

Assessing and understanding the impacts of human activities on aquatic ecosystems has long been a focus of ecologists, water resources managers, and fisheries scientists. While traditional fisheries management focused on single-species approaches to enhance fish stocks, there is a growing emphasis on management approaches at community and ecosystem levels. Of course, as fisheries managers shift their attention from narrow (e.g., populations) to broad organizational scales (e.g., communities or ecosystems), ecological processes and management objectives become more complex. At the community level, fisheries managers may strive for a fish assemblage that is complex, persistent, and resilient to disturbance. Aquatic ecosystem level objectives may focus on management for habitat quality and ecological processes, such as nutrient dynamics, productivity, or trophic interactions, but a long-term goal of ecosystem management may be to maintain ecological integrity. However, human users and social, economic, and political demands of fisheries management often result in a reduction of ecological integrity in managed systems, and this conflict presents a principal challenge for the modern fisheries manager. The concepts of biotic integrity and ecological integrity are being applied in fisheries science, natural resource management, and environmental legislation, but explicit definitions of these terms are elusive. Biotic integrity of an ecosystem may be defined as the capability of supporting and maintaining an integrated, adaptive community of organisms having a species composition, diversity, and functional organization comparable to that of a natural habitat of the region (Karr and Dudley 1981). Following that, ecological integrity is the summation of chemical, physical, and biological integrity. Thus, the concept of ecological integrity extends beyond fish and represents a holistic approach for ecosystem management that is especially applicable to aquatic systems. The more general term, ecological condition, refers to the state of the physical, chemical, and biological characteristics of the environment and the processes and interactions that connect them. While the concept of ecological integrity may appear unambiguous, its assessment and practice are much less clear. Ecological integrity made its debut in the USA with the Clean Water Act (CWA) of 1972 (Federal Water Pollution Control Act, as amended through Public Law 107–303, November 27, 2002), which states only one objective, “to restore and maintain the chemical, physical, and biological integrity of the Nation’s waters.” This legislation compelled resource managers to focus on chemical pollution from point effluent sources, such as industrial and municipal outflows, as well as give attention to diffuse, chronic, and watershed effects on ecological integrity. Further, the CWA allowed pursuit of restoration programs in degraded water bodies and catalyzed the science and practice of restoration ecology. The term ecosystem health is often raised in discussions of ecological integrity. Perhaps it is natural to anthropomorphize our concern for personal health to ecosystems, so it becomes a useful metaphor for understanding the concept of ecological integrity. However, whether or not an ecosystem should be considered an entity, such as a superorganism, is a debate without end that began with early ecologists and continues today (Clements 1916; Suter 1993; Simon 1999a). Regardless, the ecosystem is indeed a natural unit with a level of organization and properties beyond the collection of those species that occupy it and presents the most appropriate spatial and organizational scale in which to assess and study ecological integrity. Streams and rivers serve as integrators of chemical, physical, and biological conditions across the landscape, and while the theory and practice associated with ecological integrity of aquatic systems is easily applied to flowing waters and is emphasized in this chapter, they are broadly applicable among all aquatic systems.

Book chapter↗

Disease caused by environmental stressors

The use of the terms 'stress' and 'stressor' is sometimes inconsistent (e.g., Pickering, 1981). The term 'stressor' should be used to describe environmental or other factor intensities severe enough to require a compensatory response at any level of biological organization. A stressor is normally extrinsic. The term 'stress' indicates the organismic response initiated by the stressor, also at any level of biological organization. Thus, the original concept of Selye (1950) that stress is 'the sum of all the physiological responses by which an animal tries to maintain or re-establish a normal metabolism in the face of a physical or chemical force' has evolved into the concept that stress is the biological effect of any force that challenges homeostatic or stabilizing processes and extends them beyond their normal limits, at any level of biological organization - individual, population, or ecosystem (Esch and Hazen, 1978; Bayne, 1980).

Book chapter↗

Dreissenid mussel research priorities workshop

Currently, dreissenid mussels have yet to be detected in the northwestern part of the United States and western Canada. Infestation of one of the jurisdictions within the mussel-free Pacific Northwest would likely have significant economic, soci­etal and environmental implications for the entire region. Understanding the biology and environmental tolerances of dreissenid mussels, and effectiveness of various man­agement strategies, is key to prevention. On November 4-5, 2015, the Aquatic Bioinvasion Research and Policy Institute and the Center for Lakes and Reservoirs at Portland State University, the US Geological Survey, and the Pacific States Marine Fisheries Commission, convened a Dreissenid Mussel Research Priorities Workshop funded by the Great Northern Landscape Conservation Cooperative. The purpose of the workshop was to review dreissenid research priorities in the 2010 Quagga-Zebra Mussel Action Plan for Western U.S. Waters, reassess those priorities, incorporate new information and emerging trends, and develop priorities to strategically focus research efforts on zebra and quagga mussels in the Pacific Northwest and ensure that future research is focused on the highest priorities. It is important to note that there is some repetition among dreissenid research priority categories (e.g., prevention, detection, control, monitoring, and biology). Workshop participants with research experience in dreissenid mussel biology and management were identified by a literature review. State and federal agency managers were also invited to the workshop to ensure relevancy and practicality of the work­shop outcomes. A total of 28 experts (see sidebar) in mussel biology, ecology, and management attended the workshop.

Conference Paper↗

Hematology and clinical chemistry of sea otters vaptured in Prince William Sound, Alaska following the Exxon Valdez Oil Spill

Hematologic and serum chemical analyses were performed on sea otter blood samples collected from 31 adult males, 63 adult females, and 42 pups captured in western Prince William Sound (oiled area), and 12 adult males, 40 adult females, and 15 pups captured in eastern Prince William Sound (unoiled area) in 1989 and 1990. Hematologic differences between eastern and western adult males were minimal. Both hematocrits and hemoglobins were higher in western than eastern otters but the biological significance of this is equivocal. Western males had higher absolute eosinophil counts, suggesting possible systemic hypersensitivity reactions. Western males had higher serum protein and serum globulin levels than eastern males, suggesting greater antigenic stimulation (more inflammatory and/or infectious conditions). There were no differences in hematologic parameters between eastern and western female otters. Some chemistry changes were present, but the degree of difference was small. Total protein and serum globulin levels were slightly higher in western females, a finding also seen in adult males. Mean levels of liver enzymes for western females were somewhat higher than for the eastern otters, suggesting the possibility of subclinical liver disease. As a group, western pup hematocrits, hemoglobins, and red cell counts were significantly lower than those of eastern pups. From a biological perspective, these reductions were minimal but supported by individual animal data. The red cell data suggest a mild anemia in western pups; however, the degree of anemia was minimal, so that biological significance was equivocal. Other hematologic and clinical chemical differences between eastern and western pups were not striking and were also of equivocal biological significance.

Alaska↗

Mapping, exploration, and characterization of the California continental margin and associated features from the California-Oregon border to Ensenada, Mexico

Priority Geographic Area: Both within and outside US Exclusive Economic Zone (EEZ). California continental margin. This area includes and continues south of the geographic area captured in the Watt et al. white paper. Description of Priority Area: The California continental margin, from the narrow shelf to abyssal depths, contains diverse seafloor features that influence benthic community types, biological connectivity, and is associated with significant seafloor geohazards. These complex features include marginal basins, depositional slopes, submarine canyons, ridges, and seamounts, and seep environments as a result of fluid seeps along active faults. Water column characteristics are variable, with steep gradients in current velocities, which influence sediment transport, from depositional fans (slow flow, muddy) to submarine canyons and seamounts (high currents, rocky, rugged terrain). These features and associated environments can influence the distribution of deep-sea habitats, including coral and sponge communities. South of the region described in the Watt et al. and Demopoulos et al. white papers, plentiful seeps occur from northern California down to the southern California Borderland. However, the underlying foundational geology associated with these seeps varies along the margin, changing with contrasting tectonic settings, from convergent tectonics to regions dominated by strike-slip faulting (Barry et al. 1996; Paull et al. 2008; Bernardo and Smith 2010; Maloney et al. 2015). For seeps located off southern California, the relationship to strike-slip fault systems may influence the distribution of seep fluid expulsion sites and associated seep habitats (Maloney et al. 2015; Grupe et al. 2015; Conrad et al., 2017), where transpression plays a key role in formation and localization of fluid seeps. Further exploration is required in order to understand these connections. Several submarine canyons intersect the shelf within this region, serving as important channels of energy and transport of sediment from shelf to slope depths. Canyons are typically associated with high currents, turbidity flows, steep and rugged terrain, and high food availability, all of which structures canyon communities and supports hotspots of biodiversity. Specific canyons along the California margin that have been well studied include Scripps and La Jolla Canyons off San Diego, and Monterey Canyon off Monterey, but many more remain relatively unexplored. Commercially important species of fish and invertebrates have been found associated with canyons, as well as deep-sea corals and sponges (e.g., Barry et al. 1996). However, in contrast to their Atlantic counterparts (e.g., through ACUMEN and ASPIRE campaigns) there has been a dearth of exploration and characterization of canyons along the California margin. A number of questions remain regarding canyon and slope wall stability and associated geohazards, plus, how the canyons connect and influence the broader regional biogeography of benthic communities is unknown. Due to their topography, seamounts along the California margin are characterized by steep slopes, large areas of rocky substrate, and high currents. Hydrological complexity is associated with seamounts given they impinge different watermasses, depending on depth range. This heterogeneity yields complex and diverse benthic communities, including commercially important fishes (e.g., Tracey et al., 2012). The geology of Davidson, Pioneer, San Juan, and Rodriquez Seamounts has received considerable study (e.g., Davis et al., 2010) but other seamounts are less known, including how they are biologically and ecologically connected. For example, research comparing the benthic communities associated with Rodriguez and San Juan Seamounts, located outside of the Channel Islands National Marine Sanctuary and within the proposed Chumash Heritage National Marine Sanctuary, to communities found within the sanctuary is critical for managing and protecting resources within the sanctuary and modifying sanctuary boundaries. Exploration would yield the data needed to delineate and characterize essential fish habitats, and deep-sea coral and sponge communities, thus directly connecting the utility of exploration and discovery to decision making. The southern California Borderland is a geomorphologically heterogeneous area created by a complex network of faults, containing deep basins separated by shallow ridges and islands. Persistent fault-related deformation has created complex features, such as exposure of scarps and uplift rocks/ridges, seeps, erosional terraces, hydrate mounds, and mud volcanoes that provide support for thriving benthic communities. That said, significant oxygen minimum zones and low aragonite saturation states persist within several of the basin environments, influencing energy flow, community ecology, and calcification. For example, the combined effects of hypoxia and acidification pose serious threats to marine organisms and biological resources along the California margin. Mapping and exploration of the extensive faults and fault scarps can help constrain historical earthquake activity. But many questions remain regarding how the underlying geology and geological processes have shaped the biological communities.

California↗

Navigating uncertainty and competing objectives: Spring chinook salmon recovery in the upper Willamette river

Globally, anadromous fish populations are threatened with extinction due to multiple factors, including river impoundments that block migration, widespread alteration of physical habitat, temperature, and flow regimes, commercial and recreational harvest, changes in biological communities, and long-term climate trends. In this synthesis, we describe how physical and biological factors, policy and law, and public resource allocation affect management of spring-run Chinook Salmon ( Oncorhynchus tshawytscha ) in the Upper Willamette River (UWR), Oregon, USA. Efforts to restore salmon populations often involve trade-offs, for example, water management decisions must account for flood control, agricultural and municipal water use, and management of other species. UWR Chinook Salmon recovery efforts are also governed by multiple laws, policies, and action agencies that in some cases have incongruent objectives. Competing and conflicting objectives, combined with uncertainty regarding the outcomes of proposed management actions, create significant challenges for decision makers. Resource limitations, regulatory constraints, and incongruent objectives have created challenges for managers in the UWR, but opportunities exist for improved adaptive management and collaboration, which could build trust and engagement among stakeholders and ultimately support the successful implementation of decision tools. A suite of decision support tools that have been used in the Willamette River basin and elsewhere across the range of Pacific salmon have the potential to enhance decision processes. These tools can be effective when decision makers and stakeholders commit to long-term, collaborative utilization of the tools for decision making, and when available resources and regulatory environments are conducive to implementation and adaptive refinement of both the decision-support tools and management plans. The general biological and institutional principles discussed for UWR Chinook Salmon in this work apply more generally to populations of anadromous fishes across their range, especially to populations in highly regulated river systems.

Oregon↗

Exclusion of small mammals and lagomorphs invasion interact with human-trampling to drive changes in topsoil microbial community structure and function in semiarid Chile

Species losses and additions can disrupt the relationship between resident species and the structure and functioning of ecosystems. Persistent human-trampling, on the other hand, can have similar effects through the disruption of biocrusts on surface soils of semiarid systems, affecting soil stability and fixation of carbon and nitrogen. Here, we tested the interactive and synergistic impacts of the exclusion of native mammalian herbivores and the effects of introduced lagomorphs in a semiarid thorn scrub ecosystem, where soils were subjected to two different trampling intensities (i.e., trampled and non-trampled). We postulated that because of their differential habitat use and fossorial activities, with respect to native small mammals, lagomorphs would have strong negative effects on soil structure, biocrust cover, and biocrust bacterial community structure. Our expectations were that changes in biocrust cover in response to trampling where native mammals were excluded, but exotic lagomorphs were present, will spread their impacts on soil chemical and physical features. To test our hypotheses, we measured changes in soil biogeochemical properties in four experimental plots where lagomorphs (L)/small mammals (SM) were experimentally manipulated to exclude them from the plots (−), or let them be present (+). The experimental combinations monitored were: -L/+SM, -L/-SM, +L/+SM, and +L/-SM. Results showed that human-trampling disturbance interacted with the loss of native small mammals and the presence of non-native lagomorphs to cause large changes on biological (i.e., biocrust cover, bacterial and nifH genes abundance), physical (i.e., soil moisture and soil stability) and chemical (i.e., TC and TN) soil features. The relative impacts of trampling disturbance on biological and physicochemical features were strongly influenced by the presence of non-native lagomorphs. For example, larger decreases in biocrust cover and bacterial abundance were observed in treatments without lagomorphs (-L/+SM; -L/-SM). In turn, losses of biocrust cover, in addition to trampling, determined decreases in soil stability in all treatments. These results suggest that non-native lagomorphs surpass the effects of the loss of native small mammals in reducing soil quality and productivity. Therefore, human-trampling has the potential to convert low disturbed soils, as those observed in non-trampled soils in treatments -L/+SM, -L/-SM into poor soils with low biocrusts cover and concomitant low stability, as observed in +L/+SM; +L/-SM treatments. These findings agree with previous observations that different components of global change act in synergic ways in fragile, water-limited environments. Because biological invasions and soil surface disturbance are becoming widespread in dryland regions globally, understanding the long-term consequences of these interactions is essential.

Fray Jorge National Park↗

The developing framework of marine ecotoxicology: Pollutants as a variable in marine ecosystems?

Marine ecosystems include a subset in which at least some interrelated geochemical, biochemical, physiological, population and community characteristics are changed by pollutants. Moderate contamination is relatively widespread in coastal and estuarine ecosystems, so the subset of ecosystems with at least some processes affected could be relatively large. Pollutant influences have changed and will probably continue to change on time scales of decades. Biological exposures and dose in such ecosystems are species-specific and determined by how the species is exposed to different environmental media and the geochemistry of individual pollutants within those media. Bioaccumulation models offer significant promise for interpreting such exposures. Biological responses to pollutants need to be more directly linked to exposure and dose. At the level of the individual this might be improved by better understanding relationships between tissue concentrations of pollutants and responses to pollutants. Multi-discipline field and laboratory studies combined with advanced understanding of some basic processes have reduced the ambiguities in interpreting a few physiological/organismic responses to pollutants in nature. Recognition of pollutant-induced patterns in population responses could lead to similar advances. A rational framework for ecotoxicology is developing, but its further advance is dependent upon better integration of ecotoxicology with basic marine ecology and biology.

Journal of Experimental Marine Biology and Ecology↗

Seasonal habitat use indicates that depth may mediate the potential for invasive round goby impacts in inland lakes

The round goby ( Neogobius melanostomus ) is among the fastest-spreading introduced aquatic species in North America and is radiating inland from the Great Lakes into freshwater ecosystems across the landscape. Predicting and managing the impacts of round gobies requires information on the factors influencing their distribution in habitats along the invasion front, yet this information is not available for many recently invaded ecosystems. We evaluated the seasonal habitat use and biomass of round gobies in an inland temperate lake to define the spatiotemporal scope of biological interactions at the leading edge of the round goby invasion. Using novel statistical approaches, we combined hierarchical models that control for imperfect species detection with flexible smooth terms to describe non-linear relationships between round goby abundance and environmental gradients. Subsequently, we generated accurate detection-corrected estimates of the standing stock biomass of round gobies. Our results show seasonally differentiated habitat niches, where suitable round goby habitat in summer months is restricted to shallow depths (<18.4 m) with a mixture of vegetative and mussel cover. We found high round goby biomass of 122 kg/ha in occupied habitats during the summer, with a total lake-wide biomass of 766,000 kg. In winter, round gobies migrate to deep offshore habitats and disperse, dramatically altering their scope for biological interactions with resident aquatic species across summer and winter seasons. The results of this study indicate that the scope of biological interactions in inland lakes may be seasonally variable, with potential for high round goby biomass in shallow lakes or at the periphery of deep lakes in the summer months. Such shallow-water habitats may therefore present higher risk of ecological impacts from round gobies in invaded lentic ecosystems. As round gobies expand inland, consideration of seasonal habitat use will be an important factor in predicting the impacts of this pervasive invader.

New York↗

Direct and indirect influences of macrophyte cover on abundance and growth of juvenile Atlantic salmon

1. The relationships between macrophytes and the physical and biological characteristics of the environments that aquatic organisms inhabit are complex. Previous studies have shown that the macrophytes, Ranunculus (subgenus Batrachium ), which are dominant in lowland chalk streams and widespread across Europe, can enhance juvenile Atlantic salmon abundance and growth to a greater degree than other physical and biological habitat characteristics. However, mechanistic understanding of how this effect might arise requires consideration of the direct and indirect relationships among habitat characteristics that are likely to be influenced by the presence of macrophyte cover. 2. We applied structural equation modelling to data collected during a 2-year in-river manipulative experiment in the River Frome (southern England, U.K.) designed to quantify the magnitude and the relative importance of direct and indirect influences of Ranunculus cover and other physical and biological variables, including water velocity, water depth, prey biomass and body size, and abundance of con- and hetero-specifics, on abundance and somatic growth of 0+ salmon. 3. Results indicated a strongly positive direct influence of Ranunculus cover on salmon abundance, as well as positive influences of Ranunculus on velocity heterogeneity and water depth that are indirectly related to decreased salmon abundance. Interestingly, there was no indication of a direct influence of Ranunculus cover on salmon growth, although Ranunculus was indirectly related to increased salmon growth through its positive influence on prey biomass, an effect mediated by velocity heterogeneity and proportion of fast velocities. 4. These findings provide novel mechanistic insights into the key role of Ranunculus in their native lowland rivers to enhance abundance and improve conditions for multiple food web components. Strategies to maintain or enhance naturally occurring Ranunculus in these rivers are therefore likely to return wide ranging ecosystem benefits, including for species of high conservation value, such as salmon. These mechanistic impacts on habitat heterogeneity and ecosystem productivity could generalise to native macrophytes in other river systems, particularly where habitat is dominated by vegetation in the absence of large substrates.

Dorset County↗

Rising synchrony controls western North American ecosystems

Along the western margin of North America, the winter expression of the North Pacific High (NPH) strongly influences interannual variability in coastal upwelling, storm track position, precipitation, and river discharge. Coherence among these factors induces covariance among physical and biological processes across adjacent marine and terrestrial ecosystems. Here, we show that over the past century the degree and spatial extent of this covariance (synchrony) has substantially increased, and is coincident with rising variance in the winter NPH. Furthermore, centuries‐long blue oak ( Quercus douglasii ) growth chronologies sensitive to the winter NPH provide robust evidence that modern levels of synchrony are among the highest observed in the context of the last 250 years. These trends may ultimately be linked to changing impacts of the El Niño Southern Oscillation on mid‐latitude ecosystems of North America. Such a rise in synchrony may destabilize ecosystems, expose populations to higher risks of extinction, and is thus a concern given the broad biological relevance of winter climate to biological systems.

Global Change Biology↗

A model of the productivity of the northern pintail

We adapted a stochastic computer model to simulate productivity of the northern pintail (Anas acuta). Researchers at the Northern Prairie Wildlife Research Center of the U.S. Fish and Wildlife Service originally developed the model to simulate productivity of the mallard (A. platyrhynchos). We obtained data and descriptive information on the breeding biology of pintails from a literature review and from discussions with waterfowl biologists. All biological parameters in the productivity component of the mallard model (e.g, initial body weights, weight loss during laying and incubation, incubation time, clutch size, nest site selection characteristics) were compared with data on pintails and adjusted accordingly. The function in the mallard model that predicts nest initiation in response to pond conditions adequately mimicked pintail behavior and did not require adjustment.Recruitment rate was most sensitive to variations in parameters that control nest success, seasonal duckling survival rate, and yearling and adult body weight. We simulated upland and wetland habitat conditions in central North Dakota and compared simulation results with observed data. Simulated numbers were not significantly different from observed numbers of successful nests during wet, average, and dry wetland conditions. The simulated effect of predator barrier fencing in a study area in central North Dakota increased recruitment rate by an average of 18.4%. This modeling synthesized existing knowledge on the breeding biology of the northern pintail, identified necessary research, and furnished a useful tool for the examination and comparison of various management options.

Biological Report↗

Conservation status and recovery strategies for endemic Hawaiian birds

Populations of endemic Hawaiian birds declined catastrophically following the colonization of the islands by Polynesians and later cultures. Extinction is still occurring, and recovery programs are urgently needed to prevent the disappearance of many other species. Programs to recover the endemic avifauna incorporate a variety of conceptual and practical approaches that are constrained by biological, financial, social, and legal factors. Avian recovery is difficult to implement in Hawai‘i because a variety of challenging biological factors limit bird populations. Hawaiian birds are threatened by alien predatory mammals, introduced mosquitoes that transmit diseases, alien invertebrate parasites and predators that reduce invertebrate food resources, and alien animals and plants that destroy and alter habitats. Life in the remote Hawaiian Archipelago has imposed other biological constraints to avian recovery, including limited geographical distributions and small population sizes. Recovery of the endemic avifauna is also challenging because resources are insufficient to mitigate the many complex, interacting factors that limit populations. Decisions must be made for allocating limited resources to species teetering on the brink of extinction and those in decline. If funds are spent primarily on saving the rarest species, more abundant species will decline and become more difficult to recover. However, critically rare species will disappear if efforts are directed mainly towards restoring species that are declining but not in immediate danger of becoming extinct. Determining priorities is difficult also because management is needed both to supplement bird populations and to restore habitats of many species. Rare species cannot respond quickly to management efforts intended only to improve habitat and reduce limiting factors. Recovery is slow, if it occurs at all, because years or decades are generally required for habitat rehabilitation and because small populations of birds initially increase slowly even when habitat conditions are favorable. Consequently, even as habitat conditions begin to improve, small populations may disappear unless they are supplemented directly. Hawaiian bird conservation is also affected by social and legal factors, including hunting alien game species, commercial land use practices, and lawsuits and policies concerning endangered species and critical habitat. Influenced by this mixture of conflicting and competing issues, Hawaiian bird recovery programs range from management of single species and some components of their habitats to limited forms of community or ecosystem management. Although the effectiveness of most programs is difficult to evaluate because of monitoring limitations, several programs exemplify species and community management. Programs primarily intended to recover single species include Hawaiian Goose or Nene ( Branta sandvicensis ), Hawaiian Crow or ‘Alala ( Corvus hawaiiensis ), and Palila ( Loxioides bailleui ). Programs attempting to manage entire communities of forest birds include Hakalau Forest National Wildlife Refuge and Hawai‘i Volcanoes National Park on Hawai‘i, and Waikamoi Preserve, Hanawi Natural Area Reserve, and Haleakala National Park on Maui.

Hawaii↗

Community distance sampling models allowing for imperfect detection and temporary emigration

Recent developments of community abundance models (CAMs) enable us to analyze communities subject to imperfect detection. However, existing CAMs assume spatial closure, that is, that individuals are always present in the sampling plots, which is often violated in field surveys. Violation of this assumption, such as in the presence of spatial temporary emigration, can lead to the underestimates of detection probability and overestimates of population densities and diversity metrics. Here, we propose a model that simultaneously accommodates both temporary emigration and imperfect detection by integrating CAMs and a form of hierarchical distance sampling for open populations. Expected values of species richness are obtained via the summation of occupancy (or incidence) probabilities, based on species‐level densities, across all species of the community. Simulations were used to examine the effects of spatial temporary emigration on the estimation of biological communities. We also applied the proposed model to empirical data and constructed area‐based rarefaction curves accounting for temporary emigration. Simulation experiments showed that temporary emigration can decrease the local species richness (α diversity) based on densities and increase the species turnover (β diversity). Raw species counts can overestimate or underestimate α diversity in the presence of temporary emigration, but the specific biases depend on the values of detection and emigration probabilities. Our newly proposed model yielded unbiased estimates of α, β, and γ diversity in the presence of temporary emigration. The application to empirical data suggested that accounting for temporary emigration lowered area‐based rarefaction curves because availability probabilities of individual species were estimated to be <1. Temporary emigration prevails in field surveys and has broad significance for understanding the ecology and function of biological communities and separation of imperfect detection and temporary emigration resolves long‐standing issues in the use of count data. We therefore suggest that the consideration of temporary emigration would contribute to understanding the nature and role of biological communities.

Ecosphere↗

Effects of isolation on ant assemblages depend on microhabitat

How isolation affects biological communities is a fundamental question in ecology and conservation biology. Local diversity (α) and regional diversity (γ) are consistently lower in insular areas. The pattern of species turnover (β diversity) and the influence of isolation on competitive interactions are less predictable. Differences in communities across microhabitats within an isolated patch could contribute to the variability in patterns related to isolation. Trees form characteristically dense and sparse patches (low vs. high isolation) in floating marshes in coastal Louisiana, and canopy and root areas around these trees could support distinct ant communities. Consequently, trees in floating marshes provide an ideal environment to study the effects of isolation on community assemblages in different microhabitats. We sampled ant communities in 120 trees during the summer of 2016. We found ant α diversity was not different between the canopy and roots, and the magnitude and directional effects of isolation on ants were inconsistent between the canopy and root areas. In the roots of sparse sites, ant diversity (α, β, and γ) was lower, species composition was changed, and the signature of interspecific competition was more prominent compared to dense sites. In the canopy, however, significant differences between dense and sparse sites were only detected in α and γ diversity, and ant species co‐occurrence was not significantly different from a random distribution. The inconsistent responses of ants in canopy and root areas to isolation may be due to the differences of species pool size, environmental harshness, and species interactions between strata. In addition, these findings indicate that communities in distinct microenvironments can respond differentially to habitat isolation. We suggest incorporating organisms from different microhabitats into future research to better understand the influence of isolation on the assembly of biological communities.

Ecosphere↗

Expanding metal mixture toxicity models to natural stream and lake invertebrate communities

A modeling approach that was used to predict the toxicity of dissolved single and multiple metals to trout is extended to stream benthic macroinvertebrates, freshwater zooplankton, and Daphnia magna . The approach predicts the accumulation of toxicants (H, Al, Cd, Cu, Ni, Pb, and Zn) in organisms using 3 equilibrium accumulation models that define interactions between dissolved cations and biological receptors (biotic ligands). These models differ in the structure of the receptors and include a 2-site biotic ligand model, a bidentate biotic ligand or 2-pKa model, and a humic acid model. The predicted accumulation of toxicants is weighted using toxicant-specific coefficients and incorporated into a toxicity function called Tox, which is then related to observed mortality or invertebrate community richness using a logistic equation. All accumulation models provide reasonable fits to metal concentrations in tissue samples of stream invertebrates. Despite the good fits, distinct differences in the magnitude of toxicant accumulation and biotic ligand speciation exist among the models for a given solution composition. However, predicted biological responses are similar among the models because there are interdependencies among model parameters in the accumulation–Tox models. To illustrate potential applications of the approaches, the 3 accumulation–Tox models for natural stream invertebrates are used in Monte Carlo simulations to predict the probability of adverse impacts in catchments of differing geology in central Colorado (USA); to link geology, water chemistry, and biological response; and to demonstrate how this approach can be used to screen for potential risks associated with resource development.

Environmental Toxicology and Chemistry↗