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USGS2015

Life-stage-specific physiology defines invasion extent of a riverine fish

Many ecologists have called for mechanism-based investigations to identify the underlying controls on species distributions. Understanding these controls can be especially useful to construct robust predictions of how a species range may change in response to climate change or the extent to which a non-native species may spread in novel environments. Here, we link spatially intensive observations with mechanistic models to illustrate how physiology determines the upstream extent of the aquatic ectotherm smallmouth bass ( Micropterus dolomieu ) in two headwater rivers. Our results demonstrate that as temperatures become increasingly cold across a downstream to upstream gradient, food consumption in age 0 bass becomes increasingly constrained, and as a result, these fish become growth limited. Sufficient first summer growth of age 0 bass is essential for overwinter survival because young bass must persist from energy reserves accumulated during the summer, and those reserves are determined by body size. Our field data reveal the upstream extent of adult bass reproduction corresponds to a point in the downstream/upstream gradient where cold temperatures impair growth opportunities in young bass. This pattern was repeated in both study streams and explained why bass positioned nests twice as far upstream in the warm compared to the cold stream in the same basin. Placement of spawning nests by adult bass is likely subject to strong evolutionary selection in temperate systems: if bass spawn too far upstream, their young are unlikely to grow large enough to survive the winter. Consumption and growth in older bass (age 3–4) was far less sensitive to temperature. Based on these data, we suggest that temperature-sensitive age 0 bass constrain the upstream distribution limits of bass within temperate streams. In this study, we investigated how temperature-dependent physiology changed through the life history of a species and, in doing so, identified a climate-sensitive life-history stage that likely sets the distributional limits of all other life-history stages. We anticipate the framework developed here could be employed to identify how similar stage-specific environmental sensitivity determines distribution in many other ectothermic species.

Oregon↗

USGS2005

Influence of topographic complexity on solar insolation estimates for the Colorado River, Grand Canyon, AZ

Rugged topography along the Colorado River in Glen and Grand Canyons, exemplifies features common to canyon-bound streams and rivers of the arid southwest. Physical relief influences regulated river systems, especially those that are altered, and have become partially reliant on aquatic primary production. We measured and modeled instantaneous solar flux in a topographically complex environment to determine where differences in daily, seasonal and annual solar insolation occurred in this river system. At a system-wide scale, topographic complexity generates a spatial and temporal mosaic of varying solar insolation. This solar variation is a predictable consequence of channel orientation, geomorphology, elevation angles and viewshed. Modeled estimates for clear conditions corresponded closely with observed measurements for both instantaneous photosynthetic photon flux density (PPFD: ??mol m-2 s-1) and daily insolation levels (relative error 2.3%, CI ??0.45, S.D. 0.3, n = 29,813). Mean annual daily insolation levels system-wide were estimated to be 36 mol m-2 d -1 (17.5 S.D.), and seasonally varied on average from 13.4-57.4 mol m-2 d-1, for winter and summer, respectively. In comparison to identical areas lacking topographic effect (idealized plane), mean daily insolation levels were reduced by 22% during summer, and as much as 53% during winter. Depending on outlying topography, canyon bound regions having east-west (EW) orientations had higher seasonal variation, averaging from 8.1 to 61.4 mol m-2 d-1, for winter and summer, respectively. For EW orientations, 70% of mid-channel sites were obscured from direct incidence during part of the year; and of these sites, average diffuse light conditions persisted for 19.3% of the year (70.5 days), and extended upwards to 194 days. This predictive model has provided an initial quantitative step to estimate and determine the importance of autotrophic production for this ecosystem, as well as a broader application for other canyon systems. ?? 2004 Published by Elsevier B.V.

Ecological Modelling↗

USGS2021

Predator and prey events at the entrance of a surface‐oriented fish collector at North Fork Dam, Oregon

Quantifiable estimates of predator–prey interactions and relationships in aquatic habitats are difficult to obtain and rare, especially when individuals cannot be readily observed. To overcome this observational impediment, imaging sonar was used to assess the cooccurrence of predator‐size fish and juvenile salmonids, Oncorhynchus spp., at the entrance to a floating surface collector (FSC) in the forebay of North Fork Dam on the Clackamas River, Oregon (USA). Imaging sonar can be used to transform active sound waves into visual data, making it possible to obtain continuous underwater observations on the presence and interspecific interactions between predator‐size fish and prey (juvenile salmonids). Hourly counts of smolt‐size fish tracks, diel phase, water clarity and river discharge were used as covariates within a zero‐inflated Poisson model to determine how these factors may influence the number of predators in front of the FSC. Both the number of smolt‐size fish tracks and diel phase had the strongest effects on the number of predator‐size fish tracks, with more predator‐size fish tracks observed during the daytime, and as the number of smolt‐size fish tracks increased. Additionally, the presence of predator‐size fish may affect the abundance and direction of travel of juvenile salmonids, as fewer smolt‐size fish were observed when predators were present, and a greater proportion of smolt‐size fish were observed travelling away from the FSC when predator‐size fish were present. This study provides estimates of predator and prey fish abundance in the vicinity of surface collection systems at moderate‐sized hydropower projects and could help resource managers better understand mechanisms that can influence the survival and passage behaviour of juvenile salmonids using surface collection structures at dams.

Oregon↗

USGS2012

Characterization of major-ion chemistry and nutrients in headwater streams along the Appalachian National Scenic Trail and within adjacent watersheds, Maine to Georgia

An inventory of water-quality data on field parameters, major ions, and nutrients provided a summary of water quality in headwater (first- and second-order) streams within watersheds along the Appalachian National Scenic Trail (Appalachian Trail). Data from 1,817 sampling sites in 831 catchments were used for the water-quality summary. Catchment delineations from NHDPlus were used as the fundamental geographic units for this project. Criteria used to evaluate sampling sites for inclusion were based on selected physical attributes of the catchments adjacent to the Appalachian Trail, including stream elevation, percentage of developed land cover, and percentage of agricultural land cover. The headwater streams of the Appalachian Trail are generally dilute waters, with low pH, low acid neutralizing capacity (ANC), and low concentrations of nutrients. The median pH value was slightly acidic at 6.7; the median specific conductance value was 23.6 microsiemens per centimeter, and the median ANC value was 98.7 milliequivalents per liter (μeq/L). Median concentrations of cations (calcium, magnesium, sodium, and potassium) were each less than 1.5 milligrams per liter (mg/L), and median concentrations of anions (bicarbonate, chloride, fluoride, sulfate, and nitrate) were less than 10 mg/L. Differences in water-quality constituent levels along the Appalachian Trail may be related to elevation, atmospheric deposition, geology, and land cover. Spatial variations were summarized by ecological sections (ecosections) developed by the U.S. Forest Service. Specific conductance, pH, ANC, and concentrations of major ions (calcium, chloride, magnesium, sodium, and sulfate) were all negatively correlated with elevation. The highest elevation ecosections (White Mountains, Blue Ridge Mountains, and Allegheny Mountains) had the lowest pH, ANC, and concentrations of major ions. The lowest elevation ecosections (Lower New England and Hudson Valley) generally had the highest pH, ANC, and concentrations of major ions. The geology in discrete portions of these two ecosections was classified as containing carbonate minerals which has likely influenced the chemical character of the streamwater. Specific conductance, pH, ANC, and concentrations of major ions (calcium, chloride, magnesium, sodium, and sulfate) were all positively correlated with percentages of developed and agricultural land uses at the lower elevations of the central region of the Appalachian Trail (including the Green-Taconic-Berkshire Mountains, Lower New England, Hudson Valley, and Northern Ridge and Valley ecosections). The distinctly different chemical character of the streams in the central sections of the Appalachian Trail is likely related to the lower elevations, the presence of carbonate minerals in the geology, higher percentages of developed and agricultural land uses, and possibly the higher inputs of sulfate and nitrate from atmospheric deposition. Acid deposition of sulfate and nitrate are important influences on the acid-base chemistry of the surface waters of the Appalachian Trail. Atmospheric deposition estimates are consistently high (more than 18 kilograms per hectare (kg/ha) for sulfate, and more than 16 kg/ha for nitrate) at both the highest and lowest elevations. However, the lowest elevation (Green-Taconic-Berkshire Mountains, Lower New England, Hudson Valley, Northern Glaciated Allegheny Plateau, and Northern Ridge and Valley ecosections) included the largest spatial area of sustained high estimates of atmospheric deposition. Calcium-bicarbonate was the most frequently calculated water type in the Lower New England and Hudson Valley ecosections. In the northern and southern sections of the Appalachian Trail mix-cation water types were most prevalent and sulfate was the predominate anion. The predominance of the sulfate anion in the surface waters of the northern and southern ecosections likely reflects the influence of sulfate deposition. Although the central portion of the Appalachian Trail has the largest spatial area of high atmospheric acid deposition, the lower ionic strength waters in the northern and southern ecosections of the Appalachian Trail may have been more adversely affected by acid deposition. The low ionic strength of the streams in the White Mountains, Blue Ridge Mountains, and Allegheny Mountains ecosections makes parts of these regions susceptible to seasonal or event-driven episodic acidification, which can be detrimental to health of aquatic and terrestrial ecosystems. Median catchment ANC values were classified into three groups - acidic, sensitive, and insensitive. The White Mountains, Blue Ridge Mountains, and Allegheny Mountains ecosections included the highest frequency of catchments classified as acidic or sensitive. More than 56 percent of the catchments from the White Mountains ecosection were classified as sensitive to acidic inputs. In the Blue Ridge ecosection, 1.6 percent of the catchments were classified as acidic, and 38.2 percent of the catchments were classified as sensitive to acidic inputs. In the Allegheny Mountains ecosection, 17.6 percent of the catchments were classified as acidic, and 29.4 percent of the catchments were classified as sensitive to acidic inputs. Median concentrations of nitrogen species were less than 0.4 mg/L, and median concentrations of total phosphorus were less than 0.02 mg/L along the Appalachian Trail. A comparison of median catchment concentrations of nutrients to estimated national background concentrations demonstrated that concentrations along the Appalachian Trail are generally lower. A comparison of median concentrations of total nitrogen and total phosphorus to the U.S. Environmental Protection Agency's (USEPA) nutrient criteria for the Eastern U.S. ecoregions showed that the concentrations of total nitrogen in the northern section of the Appalachian Trail were generally higher than the USEPA criterion. Similarly, median concentrations of total phosphorus in the southern regions of the Appalachian Trail were approximately twice as high as USEPA criteria. Sections of the Appalachian Trail are adjacent to modest amounts of agricultural and developed land areas. These nonforested land areas may be contributing to the percentage of catchments in which concentrations of total nitrogen and total phosphorus are higher than USEPA nutrient ecoregion criteria.

Connecticut, Georgia, Maine, Massachusetts, Maryla↗

USGS2024

Unburned habitat essential for amphibian breeding persistence following wildfire

Wildfire regimes are changing rapidly with widespread increase in the intensity, frequency, and duration of fire activity, especially in the western United States. Limited studies explore the impacts of wildfires on aquatic taxa and few focus on lentic habitats that are essential for amphibians, many of which are of conservation concern. We capitalized on existing pre-fire surveys for anuran species and resurveyed a random subset of wetlands across a gradient of soil burn severity to investigate the short-term effects of wildfire on a relict population of wood frogs in the southern Rocky Mountains. We also investigated whether maps created to support rapid post-fire emergency response activities (i.e., United States Forest Service Burned Area Emergency Response program) accurately characterize soil burn severity around small habitat features (i.e., ponds) that serve as important amphibian breeding and rearing habitat. Soil burn severity reflects fire impacts on soil and surface organic layers, including vegetation loss and changes in soil structure and function. We found that wood frog ( Lithobates sylvaticus ) breeding persistence following fires was negatively influenced by the percentage of their terrestrial habitat (100 m buffer surrounding breeding ponds) that was burned. Wood frog colonization probability of previously unoccupied ponds was low (∼ 0.10) and unaffected by soil burn severity. Importantly, we found that remotely sensed data typically produced to predict flooding and erosion at broad (catchment) scales is a poor representation of the amount and variation in soil burn severity surrounding small habitat features, suggesting that additional field sampling is necessary to understand wildfire responses for species that rely on these small habitat features. Understanding short-term geographic- and species-specific variation in response to wildfires provides the basis to explore time to recovery (e.g., when wood frogs return to burned breeding sites) or to determine if declines in breeding distributions intensify over time.

Wyoming↗

USGS2014

Combining demographic and genetic factors to assess population vulnerability in stream species

Accelerating climate change and other cumulative stressors create an urgent need to understand the influence of environmental variation and landscape features on the connectivity and vulnerability of freshwater species. Here, we introduce a novel modeling framework for aquatic systems that integrates spatially explicit, individual‐based, demographic and genetic (demogenetic) assessments with environmental variables. To show its potential utility, we simulated a hypothetical network of 19 migratory riverine populations (e.g., salmonids) using a riverscape connectivity and demogenetic model (CDFISH). We assessed how stream resistance to movement (a function of water temperature, fluvial distance, and physical barriers) might influence demogenetic connectivity, and hence, population vulnerability. We present demographic metrics (abundance, immigration, and change in abundance) and genetic metrics (diversity, differentiation, and change in differentiation), and combine them into a single vulnerability index for identifying populations at risk of extirpation. We considered four realistic scenarios that illustrate the relative sensitivity of these metrics for early detection of reduced connectivity: (1) maximum resistance due to high water temperatures throughout the network, (2) minimum resistance due to low water temperatures throughout the network, (3) increased resistance at a tributary junction caused by a partial barrier, and (4) complete isolation of a tributary, leaving resident individuals only. We then applied this demogenetic framework using empirical data for a bull trout ( Salvelinus confluentus ) metapopulation in the upper Flathead River system, Canada and USA, to assess how current and predicted future stream warming may influence population vulnerability. Results suggest that warmer water temperatures and associated barriers to movement (e.g., low flows, dewatering) are predicted to fragment suitable habitat for migratory salmonids, resulting in the loss of genetic diversity and reduced numbers in certain vulnerable populations. This demogenetic simulation framework, which is illustrated in a web‐based interactive mapping prototype, should be useful for evaluating population vulnerability in a wide variety of dendritic and fragmented riverscapes, helping to guide conservation and management efforts for freshwater species.

Montana↗

USGS2003

Forest Types in the Lower Suwannee River Floodplain, Florida?-A Report and Interactive Map

A map of forest types in the lower Suwannee River floodplain, Florida, was created during a study conducted from 1996 to 2000 by the U.S. Geological Survey in cooperation with the Suwannee River Water Management District. The map is presented with this report on a compact disc with interactive viewing software. The forest map can be used by scientists for ecological studies in the floodplain based on land cover types and by landowners and management personnel making land use decisions. The study area is the 10-year floodplain of the lower Suwannee River from its confluence with the Santa Fe River to the lower limit of forests near the Gulf of Mexico. The floodplain is divided into three reaches: riverine (non-tidal), upper tidal, and lower tidal, due to changes in hydrology, vegetation, and soils with proximity to the coast. The 10-year floodplain covers about 21,170 hectares; nearly 88 percent of this area (18,580 hectares) is mapped as 14 major forest types. Approximately 29 percent (5,319 hectares) of these forests have been altered by agriculture or development. About 75 percent of the area of major forest types (13,994 hectares) is wetland forests and about 25 percent (4,586 hectares) is upland forests. Tidal wetland forests (8,955 hectares) cover a much greater area than riverine wetland forests (5,039 hectares). Oak/pine upland forests are present in the riverine and upper tidal reaches of the floodplain on elevations that are inundated only briefly during the highest floods. High bottomland hardwoods are present on the higher levees, ridges, and flats of the riverine reach where soils are usually sandy. Low bottomland hardwood forests are present in the riverine reach on swamp margins and low levees and flats that are flooded continuously for several weeks or longer every 1 to 3 years. Riverine swamps are present in the lowest and wettest areas of the non-tidal floodplain that are either inundated or saturated most of the time. Upper tidal bottomland hardwood forests are present on sandy soils on high flats and in transitional areas between upland forests and swamps. Upper tidal mixed forests are found on low levees or between swamps and higher forest types. Upper tidal swamps are present at elevations below median monthly high stage and usually have surface soils that are permanently saturated mucks. Lower tidal hammocks are found on higher elevations that do not receive regular tidal inundation but have a high water table and are briefly inundated by storm surges several times a decade. Lower tidal mixed forests include swamps with numerous small hummocks or less common larger hummocks. Lower tidal swamps are found on deep muck soils that are below the elevation of the median daily or monthly high stage. Seven additional land cover types (2,590 hectares) are mapped. Water in the main channel of the lower Suwannee River (1,767 hectares) was mapped separately from open water in the floodplain (239 hectares). Other land cover types are: seepage slopes (70 hectares), isolated forested wetlands (19 hectares), marshes upstream of the tree line (505 hectares), beds of emergent aquatic vegetation (21 hectares), and floodplain glades (46 hectares)

Water-Resources Investigations Report↗

USGS2006

Myxobolus cerebralis in native cutthroat trout of the Yellowstone Lake ecosystem

The exotic parasite Myxobolus cerebralis was first detected in native adult Yellowstone cutthroat trout Oncorhynchus clarkii bouvierii from Yellowstone Lake in 1998, seriously threatening the ecological integrity of this pristine, naturally functioning ecosystem. We immediately began to assess the prevalence and spatial extent of M. cerebralis infection in Yellowstone cutthroat trout within Yellowstone Lake and to determine the infection risk of age-0 Yellowstone cutthroat trout, the relative abundance and actinospore production of lubificid worms, and the basic environmental characteristics of tributaries. During 1999-2001, juvenile and adult Yellowstone cutthroat trout were infected throughout Yellowstone Lake; the highest prevalence (15.3-16.4%) occurred in the northern and central regions. Exposure studies in 13 streams indicated that Pelican and Clear creeks and the Yellowstone River were positive for M. cerebralis; the highest prevalence (100%) and severity was found in Pelican Creek during mid-July. Sexually mature individuals of the oligochaete Tubifex tubifex were most abundant in early summer, were genetically homogenous, and were members of a lineage known to produce moderate to high levels of M. cerebralis triactinomyxons. Only 20 of the 3,037 sampled tubificids produced actinospores after 7 d in culture, and none of the actinospores were M. cerebralis. However, one non-actinospore-producing T. tubifex from Pelican Creek tested positive for M. cerebralis by polymerase chain reaction. Stream temperatures at Pelican Creek, a fourth-order, low-gradient stream, were over 20??C during the first exposure period, suggesting that T. tubifex were capable of producing triactinomyxons at elevated temperatures in the wild. Although the infection of otherwise healthy adult Yellowstone cutthroat trout within Yellowstone Lake suggests some resistance, our sentinel cage exposures indicated that this subspecies may be more susceptible to whirling disease than previous laboratory challenges have indicated, and M. cerebralis may be contributing to a significant recent decline in this population. ?? Copyright by the American Fisheries Society 2006.

Wyoming↗

USGS2022

Integrating principles and tools of decision science into value-driven watershed planning for compensatory mitigation

Several environmental policies strive to restore impaired ecosystems and could benefit from a consistent and transparent process — co-developed with key stakeholders — to prioritize impaired ecosystems for restoration activities. The Clean Water Act, for example, establishes reallocation mechanisms to transfer ecosystem services from sites of disturbance to compensation sites to offset aquatic resource functions that are unavoidably lost through land development. However, planning for the prioritization of compensatory mitigation areas is often hampered by decision-making processes that fall into a myopic decision frame because they are not co-produced with stakeholders. In this study, we partnered with domain experts from the North Carolina Division of Mitigation Services (NCDMS) to co-develop a real-world decision framework to prioritize catchments by potential for the development of mitigation projects following principles of a structured decision-making process and knowledge co-production. Following an iterative decision analysis cycle, domain experts revised foundational components of the decision framework and progressively added complexity and realism as they gained additional insights or more information became available. Through the course of facilitated in-person and remote interactions, the co-development of a decision framework produced three main ‘breakthroughs’ from the perspective of the stakeholder group: a) recognition of the problem as a multi-objective decision driven by several values in addition to biogeophysical goals (e.g., functional uplift; restoring or enhancing lost functionality of ecosystems), b) that the decision comprises a linked and sequential planning-to-implementation process, and c) future risk associated with land-use and climate change must be considered. We also present an interactive tool for ‘on-the-fly’ assessment of alternatives and tradeoff analysis, allowing domain experts to quickly test, react to, and revise prioritization strategies. The decision framework described in this study is not limited to the prioritization of compensatory mitigation activities across North Carolina, but rather serves as a framework to prioritize a wide range of restoration, conservation, and resource allocation activities in similar environmental contexts across the nation.

Ecological Applications↗

USGS2003

Subcellular compartmentalization of Cd and Zn in two bivalves. I. Significance of metal-sensitive fractions (MSF) and biologically detoxified metal (BDM)

Many aspects of metal accumulation in aquatic invertebrates (i.e. toxicity, tolerance and trophic transfer) can be understood by examining the subcellular partitioning of accumulated metal. In this paper, we use a compartmentalization approach to interpret the significance of metal, species and size dependence in the subcellular partitioning of Cd and Zn in the bivalves Macoma balthica and Potamocorbula amurensis . Of special interest is the compartmentalization of metal as metal-sensitive fractions (MSF) (i.e. organelles and heat-sensitive proteins, termed Œenzymes¹ hereafter) and biologically detoxified metal (BDM) (i.e. metallothioneins [MT] and metal-rich granules [MRG]). Clams from San Francisco Bay, CA, were exposed for 14 d to seawater (20” salinity) containing 3.5 µg l -1 Cd and 20.5 µg l -1 Zn, including 109 Cd and 65 Zn as radiotracers. Uptake was followed by 21 d of depuration. The subcellular partitioning of metal within clams was examined following exposure and loss. P. amurensis accumulated ~22x more Cd and ~2x more Zn than M. balthica . MT played an important role in the storage of Cd in P. amurensis , while organelles were the major site of Zn accumulation. In M. balthica , Cd and Zn partitioned similarly, although the pathway of detoxification was metal-specific (MRG for Cd; MRG and MT for Zn). Upon loss, M. balthica depurated ~40% of Cd with Zn being retained; P. amurensis retained Cd and depurated Zn (~40%). During efflux, Cd and Zn concentrations in the MSF compartment of both clams declined with metal either being lost from the animal or being transferred to the BDM compartment. Subcellular compartmentalization was also size-dependent, with the importance of BDM increasing with clam size; MSF decreased accordingly. We hypothesized that progressive retention of metal as BDM (i.e. MRG) with age may lead to size dependency of metal concentrations often observed in some populations of M. balthica .

Marine Ecology Progress Series↗

USGS2013

An algorithmic and information-theoretic approach to multimetric index construction

The use of multimetric indices (MMIs), such as the widely used index of biological integrity (IBI), to measure, track, summarize and infer the overall impact of human disturbance on biological communities has been steadily growing in recent years. Initially, MMIs were developed for aquatic communities using pre-selected biological metrics as indicators of system integrity. As interest in these bioassessment tools has grown, so have the types of biological systems to which they are applied. For many ecosystem types the appropriate biological metrics to use as measures of biological integrity are not known a priori. As a result, a variety of ad hoc protocols for selecting metrics empirically has developed. However, the assumptions made by proposed protocols have not be explicitly described or justified, causing many investigators to call for a clear, repeatable methodology for developing empirically derived metrics and indices that can be applied to any biological system. An issue of particular importance that has not been sufficiently addressed is the way that individual metrics combine to produce an MMI that is a sensitive composite indicator of human disturbance. In this paper, we present and demonstrate an algorithm for constructing MMIs given a set of candidate metrics and a measure of human disturbance. The algorithm uses each metric to inform a candidate MMI, and then uses information-theoretic principles to select MMIs that capture the information in the multidimensional system response from among possible MMIs. Such an approach can be used to create purely empirical (data-based) MMIs or can, optionally, be influenced by expert opinion or biological theory through the use of a weighting vector to create value-weighted MMIs. We demonstrate the algorithm with simulated data to demonstrate the predictive capacity of the final MMIs and with real data from wetlands from Acadia and Rocky Mountain National Parks. For the Acadia wetland data, the algorithm identified 4 metrics that combined to produce a -0.88 correlation with the human disturbance index. When compared to other methods, we find this algorithmic approach resulted in MMIs that were more predictive and comprise fewer metrics.

Ecological Indicators↗

USGS2014

Nearshore energy subsidies support Lake Michigan fishes and invertebrates following major changes in food web structure

Aquatic food webs that incorporate multiple energy channels (e.g. nearshore benthic or pelagic) with varying productivity and turnover rates convey stability to biological communities by providing multiple independent energy sources. Within the Lake Michigan food web, invasive dreissenid mussels have caused rapid changes to food web structure and potentially altered the channels through which consumers acquire energy. We used stable C and N isotopes to determine how Lake Michigan food web structure has changed in the past decade, coincident with the expansion of dreissenid mussels, decreased pelagic phytoplankton production and increased nearshore benthic algal production. Fish and invertebrate samples collected from sites around Lake Michigan were analyzed to determine taxa-specific 13C:12C (delta 13C) and 15N:14N (delta 15N) ratios. Sampling took place during two distinct periods, 2002-2003 and 2010-2012, that spanned the period of dreissenid expansion, and included nearshore, pelagic and profundal fish and invertebrate taxa. Magnitude and direction of the 13C shift indicated significantly greater reliance upon nearshore benthic energy sources among nearly all fish taxa as well as profundal invertebrates. Although the mechanisms underlying this 13C shift likely varied among species, possible causes include the transport of benthic algal production to offshore waters and an increased reliance on nearshore prey items. Delta 15N shifts were more variable and of smaller magnitude across taxa although declines in delta 15N among some pelagic fishes may indicate a shift to alternative prey resources. Lake Michigan fishes and invertebrates appear to have responded to dreissenid induced changes in nutrient and energy pathways by switching from pelagic to alternative nearshore energy subsidies. Although large shifts in energy allocation (i.e. pelagic to nearshore benthic) resulting from invasive species appear to have affected total production at upper trophic levels, changes in trophic structure and utilization of novel energy pathways may help to stabilize food webs following species invasions.

Lake Michigan↗

USGS1997

Stream habitat characteristics of fixed sites in the western Lake Michigan drainages, Wisconsin and Michigan, 1993-95

Habitat characteristics of 11 fixed sites in the Western Lake Michigan Drainages were examined by the U.S. Geological Survey from 1993 through 1995 as part of the ecological assessment of the National Water-Quality Assessment Program. Evaluation of habitat consisted of more than 75 measurements at three spatial levels: drainage basin, stream segment between major tributaries (length from 1 to 14 kilometers), and stream reach (approximately 150 meters). The 11 fixed sites consisted of 8 "indicator" sites with drainage basins that differ in bedrock type, surficial deposits, and land use; and 3 "integrator" sites with drainage basins that contain a mixture of bedrock type, surficial deposits, and land use. Spatial and temporal variations in habitat characteristics are described and compared. Comparisons are limited to indicator sites except for comparisons amongbasin characteristics, which include all fixed sites. Two habitat classification schemes used in Wisconsin and Michigan were used to rank the quality of habitat in indicator streams. Reach-level data were collected at two additional reaches at three of the indicator sites to assess the representativeness of the reach for overall stream conditions. Although the number of sites is small, statistical analyses indicate that spatial distribution of several characteristics can be related to land use, geology, topography, and width of the riparian zone. Land use and geology, in combination, appeared to be important factors in controlling flood magnitudes. Annual mean flow was correlated with basin shape and drainage density and low flow was correlated with permeability of soils in the basin. At the reach level, a wide variety of characteristics were observed at the eight indicator sites, with many of the characteristics significantly different between sites. Spatial differences in some reach characteristics can be attributed to the percentage of agriculture in the drainage basin, type of surficial deposits, and width of the riparian zone. Temporal variability in width, depth, and velocity can be attributed to variable flow conditions; whereas temporal variability in streambank measurements are attributed to problematic identification of the boundary between the flood plain and streambanks. Data from multiple-reach sites indicate that the primary reach adequately represented the variability found within the stream segment for depth, streambank stability index, and canopy angle. However, velocity, dominant substrate type, embeddedness, streambank height, streambank angle, and streambank vegetative stability differed among the multiple reaches at one or more of the three sites. Correlation analyses of habitat characteristics with median concentrations of four nutrients, pH, and specific conductance indicates that dissolved nitrate plus nitrite concentrations are related to percentage of agriculture in the basin and fine-grained sediment deposition in the reach. Geology and land use appear to be major influences on pH, but their influence on specific conductance, although expected, was not confirmed in this study. Habitat evaluation scores at the eight indicator sites ranged from poor to good. Scores were correlated to the percentage of agricultural or urban land in the drainage basins, width of the riparian zone, and streambank stability index. Results from this study illustrate the need for collection of habitat data at multiple scales along with water-chemistry data for determining major influences on distribution of aquatic communities. These results also indicate the importance of collecting land use, geological, and geomorphic information at the drainage-basin level to adequately describe how natural and human factors influence local aquatic habitat conditions.

Michigan, Wisconsin↗

USGS2022

Decision support for aquatic restoration based on species-specific responses to disturbance

Disturbances to aquatic habitats are not uniformly distributed within the Great Lakes and acute effects can be strongest in nearshore areas where both landscape and within lake effects can have strong influence. Furthermore, different fish species respond to disturbances in different ways. A means to identify and evaluate locations and extent of disturbances that affect fish is needed throughout the Great Lakes. We used partial Canonical Correspondence Analysis to separate “natural” effects on nearshore assemblages from disturbance effects. Species-specific quadratic models of fish abundance as functions of in-lake disturbance or watershed-derived disturbance were developed separately for each of 35 species and lakewide predictions mapped for Lake Erie. Most responses were unimodal and more species decreased in abundance with increasing watershed disturbance than increased. However, eight species increased in abundance with current in-lake disturbance conditions. Optimum Yellow Perch ( Perca flavescens ) abundance occurred at in-lake disturbance values less than the gradient mean, but decreased continuously from minimum watershed disturbance to higher values. Bands of optimum in-lake conditions occurred throughout the eastern and western portions of the Lake Erie nearshore zone; some areas were less disturbed than desirable. However, watershed-derived disturbance conditions were generally poor for Yellow Perch throughout the lake. In contrast, optimum Smallmouth Bass ( Micropterus dolomieu ) abundance occurred at in-lake disturbance values greater than the gradient mean and continuously increased with increasing watershed disturbance. Smallmouth Bass responses to disturbance indicated that most of the nearshore zone was less disturbed than is desirable and were most abundant in areas that the Yellow Perch response indicated were highly disturbed. Mapping counts of species response models that agreed on the disturbance level in each spatial unit of the nearshore zone showed a fine-scale mosaic of areas in which habitat restoration may benefit many or few species. This tool may assist managers in prioritizing conservation and restoration efforts and evaluating environmental conditions that may be improved.

Great Lakes↗

USGS1999

Fishes of Missouri River, chute, and flood plain habitats: Chapter 4 in Initial biotic survey of Lisbon Bottom, Big Muddy National Fish and Wildlife Refuge

The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge (Refuge) is approximately 2,200 acres and is the first complete unit of the Refuge. Primary objectives of the Refuge are to create and restore diverse riverine aquatic habitats and reconnect the Missouri River to its flood plain where feasible. Management seeks to accomplish these objectives by encouraging natural processes of erosion, deposition, and succession to the greatest extent possible. One of the most salient aquatic features of the Lisbon Bottom Unit is a newly created 2-mile-long free-flowing chute, or side channel (Fig. 1). This chute began forming as a levee breech scour hole during the Great Flood of 1993. The chute continued to develop during the 1995 flood and finally cut through to a flowing side channel during the 1996 flood. Extensive erosion and bank sluffing continued during 1997 due to sustained high flows that occurred throughout most of the year. The chute has progressively become wider and deeper with a developing meander pattern and channel bars have begun to form. Lisbon Bottom also contains several seasonal and permanent wetlands and is subject to periodic flooding at high Missouri River stages. Eight studies have been completed or are ongoing to evaluate Missouri River fishes associated with various habitat components of Lisbon Bottom and adjacent Missouri River reaches (Table 1). Several are part of much larger investigations to evaluate fish use of flood-created habitat features, basinwide fish assessment, and endangered or candidate species concerns. At the Lisbon Bottom Unit or in the Missouri River adjacent to the unit 54 fish species were collected (Table 2). Eight of these species have either a protected status under State or Federal laws or biologists consider them to potentially qualify for protected status. The status of the following fish is listed in Table 2: pallid sturgeon x shovelnose sturgeon hybrid, paddlefish, northern pike, sturgeon chub, sicklefin chub, ghost shiner, western silvery minnow, plains minnow, and blue sucker. Equally important to note are fish species that were not collected. The flathead chub, currently listed as State endangered and proposed for Federal listing, were not collected in any of the studies. Common fish species, collected in all seven sampling studies, included gizzard shad, common carp, river carpsucker, and freshwater drum. Paddlefish, skipjack herring, silver carp, white sucker, redfin shiner, western silvery minnow, bullhead minnow, and black bullhead were each collected in only one of the seven studies. Pflieger (1971) developed a guild system for the fishes of Missouri based on distribution patterns and centers of abundance. Fish were assigned to one of four primary faunal groups: Ozark, Big River, Lowland, and Prairie. Two secondary groups (Ozark-prairie and Ozark-lowland) were defined for species equally abundant and distributed in two of the primary areas. Two Ozark-prairie species, shorthead redhorse and white sucker, were collected on or near the Lisbon Bottom Unit. Big River species are found primarily in the Missouri and Mississippi Rivers. The environmental factors controlling fish distribution in these rivers appear to be substrate, current velocity, and turbidity. On or near the Lisbon Bottom Unit 18 Big River species were collected (Table 2). Lowland species are intolerant of siltation and high turbidity. They inhabit standing or slow-moving water with sand, fine gravel, and organic debris substrates. Two Lowland species, bullhead minnow and mosquitofish, were collected in connected scours on the Lisbon Bottom Unit. Prairie species have broader ecological tolerances than the Ozark and Lowland species. They are largely absent in high gradient streams and cool, clear waters. Prairie species make up a significant proportion of Missouri and Mississippi River fishes. Seven Prairie species were collected on or near the Lisbon Bottom Unit (Table 2). The last group, Wide-ranging, was defined as the species more widespread than the other faunal groups with broader environmental tolerances. Most Wide-ranging species occur at least occasionally in all sections of the state. Nineteen Wide-ranging species were collected on or near the Lisbon Bottom Unit (Table 2). Kubisiak (1997) found that isolated scours in the Lower Missouri River were dominated by Wide-ranging species. Connected scours also held Wideranging species but they contained Prairie species and were dominated by Big River species. Faunal group diversity and species richness were compared between isolated (Study l) and connected (Studies 4, 5, 7, and 8) scours of the Lisbon Bottom Unit. Species richness was similar with 22 species collected in isolated scours and an average of 24.8 species collected in connected scours. Isolated scour fish catches were dominated by Wide-ranging fish (59%) with 14% Big River fishes and 14% Prairie fishes. Connected scours had a larger percentage of Big River fish (32%) and fewer Wide-ranging (36%) and Prairie (13%) species than the isolated scours. In the combined studies, Wide-ranging fish dominated the connected scours. A similar comparison was made of fish from chute habitats and the Missouri River. Chute habitats include the Lisbon Bottom Chute, the chute between the right bank and island located at river mile 219, and a shallow channel running between a large sandbar complex and the channel border adjacent to Lisbon Bottom. Species richness in the chutes (35 species) was greater than that of the adjacent river (23 species). Big River species (40%) dominated the chute samples, followed by Wide-ranging at 31% Cand Prairie Cut 14%. The river samples contained equal numbers of Wide-ranging species (35%) and Big River species (35%) with 17% Prairie species. Differences in fish guild diversity and species richness may be due to numerous factors including sampling effort and sampling season. River samples were collected only in Study 3 in October; chute samples were collected in July, August, and October. Fish may have been using the chute in July and August to spawn, feed, or escape high river levels. The Lisbon Bottom Chute is a truly unique feature of the Lower Missouri River. It is the first naturally created side channel to develop since the U.S. Army Corps of Engineers tamed the river. The Corps eliminated 89% of the islands in the Missouri River between 1879 and 1954 (Funk and Robinson 1974). The chutes between the islands and the shore were shallower with less current than the main channel. These areas provided diversity to the Missouri River fish habitat, serving as nursery and feeding areas. The Lisbon Bottom Unit of the Big Muddy National Fish and Wildlife Refuge will continue to be studied in an effort to understand the complex role these areas play in river systems.

Missouri↗

USGS1996

Water quality of the lower Columbia River Basin: Analysis of current and historical water-quality data through 1994

The lower Columbia River Basin includes the river basins draining into the Columbia River below Bonneville Dam—the largest of which is the Willamette River. This report presents the results of a study by the U.S. Geological Survey, done in cooperation with the Lower Columbia River Bi-State Water- Quality Program, to describe the water-quality conditions in the lower Columbia River Basin by interpreting historical data collected and data collected in 1994. Historical water-quality data spanning more than 50 years and comprising more than 200 parameters were collated for interpretation in this report. The U.S. Geological Survey, the Oregon Department of Environmental Quality, and the Washington Department of Ecology collected water-quality data at 10 sites in the lower Columbia River Basin from January to December of 1994. Water-quality constituents measured in 1994 were screened against U.S. Environmental Protection Agency (EPA) and State guidelines. Arsenic, a human carcinogen, was detected in 15 of 16 samples in the lower Columbia River, but was not detected in any of the sampled tributaries. All 15 arsenic detections had concentrations that exceeded both the EPA ambient water-quality criteria for the protection of human health and the EPA human-health advisories for drinking water. Chromium was detected at all four Columbia River sites—most frequently in the Columbia River at Hayden Island. None of the chromium concentrations detected, however, exceeded water-quality criteria or guidelines. Measurements of suspended trace-element concentrations (trace-element concentrations associated with the suspended-sediment fraction) showed that the suspended form is the dominant transport phase for aluminum, iron, and manganese, whereas the dissolved form is the dominant transport phase for arsenic, barium, chromium, and copper. On the basis of tributary loads during summer low-flow months, sources of suspended silver, nickel, aluminum, and antimony exist in the lower Columbia River Basin, whereas the sources of suspended zinc and arsenic exist outside of the lower basin. Twenty organic compounds were detected of the 47 compounds analyzed for this study. None of the organic compounds measured exceeded EPA’s ambient water-quality criteria or drinking-water guidelines. The Willamette River at Portland had the largest number of detections, and all 20 compounds were detected at one time or another at that site. The largest concentrations of the agricultural pesticides, atrazine, metolachlor, and simazine were detected in the Willamette River, where they were detected in 93, 86, 93 percent, respectively, of the samples collected. The highest concentrations of atrazine in the Willamette River were associated with the spring application and fall runoff periods. Both historical and current data showed that the highest water temperatures in the lower Columbia River Basin are present during August. For water years 1977–81 in the Columbia River at Bradwood (river mile 38.9), 75 percent of the daily mean water temperatures during August exceeded 20 degrees Celsius, a “special condition” criterion for the State of Washington. The special condition criterion was exceeded at four sites on the lower Columbia River during July and August, 1994—a period coinciding with season-high air temperatures and low streamflow. Trend tests using data from 1974 to 1994 showed significant (r < 0.05) upward trends for water temperature at the Columbia River at Warrendale and the Willamette River at Portland. Concentrations of dissolved oxygen and total dissolved gas were above saturation levels during high stormflows in the lower Columbia River and the Willamette River during 1994. The high concentrations of total dissolved gas in the Columbia River exceeded Oregon and Washington State standards of 110 percent of saturation and were caused by spilling water at the Columbia River dams. Aquatic life in the lower Columbia River Basin was not subjected to low dissolved-oxygen concentrations. Comparison of dissolved-oxygen concentrations in the Willamette River from 1949–58 to 1972–94 showed a significant increase in dissolved-oxygen concentrations during the low-streamflow months of summer. Trend tests showed significant (r < 0.05) downward trends from 1973 to 1994 for three constituents at the Columbia River at Warrendale: phosphorus in unfiltered water, total dissolved solids, and specific conductance. These trends may be a consequence of more conservative agricultural practices in the area upstream from Warrendale.

Oregon↗

USGS2004

Hydrologic aspects of marsh ponds during winter on the Gulf Coast Chenier Plain, USA: Effects of structural marsh management

The hydrology of marsh ponds influences aquatic invertebrate and waterbird communities. Hydrologic variables in marsh ponds of the Gulf Coast Chenier Plain are potentially affected by structural marsh management (SMM: levees, water control structures and impoundments) that has been implemented since the 1950s. Assuming that SMM restricts tidal flows and drainage of rainwater, we predicted that SMM would increase water depth, and concomitantly decrease salinity and transparency in impounded marsh ponds. We also predicted that SMM would increase seasonal variability in water depth in impounded marsh ponds because of the potential incapacity of water control structures to cope with large flooding events. In addition, we predicted that SMM would decrease spatial variability in water depth. Finally, we predicted that ponds of impounded freshwater (IF), oligohaline (IO), and mesohaline (IM) marshes would be similar in water depth, temperature, dissolved oxygen ( O 2 ), and transparency. Using a priori multivariate analysis of variance (MANOVA) contrast, we tested these predictions by comparing hydrologic variables within ponds of impounded and unimpounded marshes during winters 1997-1998 to 1999-2000 on Rockefeller State Wildlife Refuge, near Grand Chenier, Louisiana. Specifically, we compared hydrologic variables (1) between IM and unimpounded mesohaline marsh ponds (UM); and (2) among IF, IO, and IM marshes ponds. As predicted, water depth was higher and salinity and O 2 were lower in IM than in UM marsh ponds. However, temperature and transparency did not differ between IM and UM marsh ponds. Water depth varied more among months in IM marsh ponds than within those of UM marshes, and variances among and within ponds were lower in IM than UM marshes. Finally, all hydrologic variables, except salinity, were similar among IF, IO, and IM marsh ponds. Hydrologic changes within marsh ponds due to SMM should (1) promote benthic invertebrate taxa that tolerate low levels of O 2 and salinity; (2) deter waterbird species that cannot cope with increased water levels; and (3) reduce waterbird species diversity by decreasing spatial variability in water depth among and within marsh ponds.

Louisiana↗

USGS2018

Evaluation of acoustic telemetry grids for determining aquatic animal movement and survival

Acoustic telemetry studies have frequently prioritized linear configurations of hydrophone receivers, such as perpendicular from shorelines or across rivers, to detect the presence of tagged aquatic animals. This approach introduces unknown bias when receivers are stationed for convenience at geographic bottlenecks (e.g., at the mouth of an embayment or between islands) as opposed to deployments following a statistical sampling design. We evaluated two-dimensional acoustic receiver arrays (grids: receivers spread uniformly across space) as an alternative approach to provide estimates of survival, movement, and habitat use. Performance of variably-spaced receiver grids (5–25 km spacing) was evaluated by simulating (1) animal tracks as correlated random walks (speed: 0.1–0.9 m/s; turning angle standard deviation: 5–30 degrees); (2) variable tag transmission intervals along each track (nominal delay: 15–300 seconds); and (3) probability of detection of each transmission based on logistic detection range curves (midpoint: 200–1500 m). From simulations, we quantified i) time between successive detections on any receiver (detection time), ii) time between successive detections on different receivers (transit time), and iii) distance between successive detections on different receivers (transit distance). In the most restrictive detection range scenario (200 m), the 95 th percentile of transit time was 3.2 days at 5 km grid spacing, 5.7 days at 7 km, and 15.2 days at 25 km; for the 1500 m detection range scenario, it was 0.1 days at 5 km, 0.5 days at 7 km, and 10.8 days at 25 km. These values represented upper bounds on the expected maximum time that an animal could go undetected. Comparison of the simulations with pilot studies on three fishes (walleye Sander vitreus , common carp Cyprinus carpio , and channel catfish Ictalurus punctatus ) from two independent large lake ecosystems (lakes Erie and Winnipeg) revealed shorter detection and transit times than what simulations predicted. By spreading effort uniformly across space, grids can improve understanding of fish migration over the commonly employed receiver line approach, but at increased time cost for maintaining grids.

Methods in Ecology and Evolution↗