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Depositional settings of sand beaches along whitewater rivers

The numbers and sizes of sand beaches suitable for recreation along selected whitewater rivers in the western United States depend on sand concentrations, range of discharge and the size, frequency and type of depositional settings. River-width expansions downstream from constrictions are the predominant depositional setting for sand beaches in the upper Grand Canyon and along five Wild and Scenic Rivers in Idaho, but not along other rivers. Beaches located upstream from constrictions are rare, in general, except in the Grand Canyon. Beaches found in expansions without constrictions dominate depositional sites along the Yampa and Green Rivers, are fairly common along the rivers in Idaho, but are relatively rare in the Grand Canyon. The magnitude of flow expansion is a reliable predictor of beach size. Beaches located on the inside of curves are uncommon, in general, but can be important recreation sites. The mid-channel bar setting is the least important from a recreation standpoint because that setting is rare and beaches there are typically small, and emergent only at low flow. The frequency of beaches is highly variable among rivers and the concentration of sand in transport is only partially responsible. Of the rivers studied, the unregulated Yampa River carries the highest concentrations of suspended sand and has among the most beaches (1.2 beaches km-1). Emergent sand beaches are essentially nonexistent along the Deschutes River and are rare along other Oregon rivers, yet these rivers transport some sand. Sand beaches are fairly common (0.8-1.1 beaches km-1) along the regulated Colorado River, but are comparatively rare (0.6 beaches km-1) along the unregulated Middle Fork Salmon River. The suspended sand concentrations in study reaches of these two rivers are similar, and the difference in the frequency of beaches may be largely because the processes that create beach-deposition settings are less active along the Middle Fork Salmon.

River Research and Applications↗

Rivers of the Lower Mississippi Basin

Discussed in this chapter are seven significant tributaries of the Lower Mississippi River and its major distributary. As a group, these eight rivers and their basins encompass substantial variation in physical form, hydrology, biota, ecology, and human impacts. The Current River, Ouachita River, and Saline River, flow to the Mississippi out of the U.S. Interior Highlands. The Cache River basin, centered in Arkansas, contains a vast expanse of bottomland hardwood forest and is famous for wintering waterfowl. The Hatchie River, flowing west out of Tennessee, is the longest free-flowing tributary of the Lower Mississippi River and famous for its rich diversity of mussels and fishes. The Wolf River of Tennessee supports a magnificent bald cypress-tupelo swamp and is notable as a protected urban river that flows through Memphis. The Big Sunflower River begins and ends in the alluvial floodplain of the Mississippi River and flows through a basin of intense agriculture and historical human conflict. The Atchafalaya River, the primary distributary of the Mississippi River, supports the nation's largest expanse of bottomland hardwood forest and swamp wetlands. In this chapter, we review the physiography, geomorphology, hydrology, water chemistry, land use, biological diversity, ecological processes, human impacts, and areas of need for research and management of each of these eight rivers and their basins.

Lower Mississippi River basin↗

Large-scale dam removal on the Elwha River, Washington, USA: source-to-sink sediment budget and synthesis

Understanding landscape responses to sediment supply changes constitutes a fundamental part of many problems in geomorphology, but opportunities to study such processes at field scales are rare. The phased removal of two large dams on the Elwha River, Washington, exposed 21 ± 3 million m 3 , or ~ 30 million tonnes (t), of sediment that had been deposited in the two former reservoirs, allowing a comprehensive investigation of watershed and coastal responses to a substantial increase in sediment supply. Here we provide a source-to-sink sediment budget of this sediment release during the first two years of the project (September 2011–September 2013) and synthesize the geomorphic changes that occurred to downstream fluvial and coastal landforms. Owing to the phased removal of each dam, the release of sediment to the river was a function of the amount of dam structure removed, the progradation of reservoir delta sediments, exposure of more cohesive lakebed sediment, and the hydrologic conditions of the river. The greatest downstream geomorphic effects were observed after water bodies of both reservoirs were fully drained and fine (silt and clay) and coarse (sand and gravel) sediments were spilling past the former dam sites. After both dams were spilling fine and coarse sediments, river suspended-sediment concentrations were commonly several thousand mg/L with ~ 50% sand during moderate and high river flow. At the same time, a sand and gravel sediment wave dispersed down the river channel, filling channel pools and floodplain channels, aggrading much of the river channel by ~ 1 m, reducing river channel sediment grain sizes by ~ 16-fold, and depositing ~ 2.2 million m 3 of sand and gravel on the seafloor offshore of the river mouth. The total sediment budget during the first two years revealed that the vast majority (~ 90%) of the sediment released from the former reservoirs to the river passed through the fluvial system and was discharged to the coastal waters, where slightly less than half of the sediment was deposited in the river-mouth delta. Although most of the measured fluvial and coastal deposition was sand-sized and coarser (> 0.063 mm), significant mud deposition was observed in and around the mainstem river channel and on the seafloor. Woody debris, ranging from millimeter-size particles to old-growth trees and stumps, was also introduced to fluvial and coastal landforms during the dam removals. At the end of our two-year study, Elwha Dam was completely removed, Glines Canyon Dam had been 75% removed (full removal was completed 2014), and ~ 65% of the combined reservoir sediment masses—including ~ 8 Mt of fine-grained and ~ 12 Mt of coarse-grained sediment—remained within the former reservoirs. Reservoir sediment will continue to be released to the Elwha River following our two-year study owing to a ~ 16 m base level drop during the final removal of Glines Canyon Dam and to erosion from floods with larger magnitudes than occurred during our study. Comparisons with a geomorphic synthesis of small dam removals suggest that the rate of sediment erosion as a percent of storage was greater in the Elwha River during the first two years of the project than in the other systems. Comparisons with other Pacific Northwest dam removals suggest that these steep, high-energy rivers have enough stream power to export volumes of sediment deposited over several decades in only months to a few years. These results should assist with predicting and characterizing landscape responses to future dam removals and other perturbations to fluvial and coastal sediment budgets.

Washington↗

Late Quaternary chronostratigraphic framework of terraces and alluvium along the lower Ohio River, southwestern Indiana and western Kentucky, USA

The lower Ohio River valley is a terraced fluvial landscape that has been profoundly influenced by Quaternary climate change and glaciation. A modern Quaternary chronostratigraphic framework was developed for the lower Ohio River valley using optically stimulated luminescence (OSL) dating and allostratigraphic mapping to gain insights into the nature of fluvial responses to glacial–interglacial/stadial–interstadial transitions and Holocene climate change. River deposits, T0 (youngest) to T7 (oldest), were mapped along a 75 km reach of the lower Ohio River and were dated using 46 OSL and 5 radiocarbon samples. The examination of cores combined with OSL and radiocarbon dating shows that fluvial sediments older than marine oxygen isotope stage (MIS) 2 are present only in the subsurface. Aggradation during MIS 6 (Illinoian glaciation) filled the valley to within ∼7 m of the modern floodplain, and by ∼114 ka (MIS 5e/Sangamon interglacial) the Ohio River had scoured the MIS 6 sediments to ∼22 m below the modern floodplain surface. There were no fluvial sediments in the valley with ages between MIS 5e and the middle of MIS 3. The MIS 3 ages (∼39 ka) and stratigraphic position of T5 deposits suggest the Ohio River aggraded 8–14 m during MIS 4 or MIS 3. Near the end of MIS 3, the Ohio River incised the mid Last Glacial (mid-Wisconsinan) deposits ∼10 m and began aggrading again by ∼30 ka. Aggradation continued into MIS 2, with maximum MIS 2 aggradation occurring before ∼21 ka, which is coincident with the global Last Glacial Maximum (LGM). As the Ohio River adjusted to changing fluxes in sediment load and discharge following the LGM, it formed a sequence of fill-cut terraces in the MIS 2 outwash that get progressively younger with decreasing elevation, ranging in age from ∼21 ka to ∼13 ka. From ∼14 ka to ∼13 ka the Ohio River rapidly incised ∼3 m to form a new terrace, and by ∼12 ka at the onset of the Holocene, the Ohio River established a meandering channel pattern. The river formed a broad floodplain surface from ∼12 ka to ∼6 ka, and then incised ∼1 m and formed a fill-cut terrace from ∼6 ka to ∼5 ka. After ∼5 ka, likely in response to mid-Holocene drought in North America, the Ohio River incised ∼5 m, and by ∼4 ka the river began aggrading again. The Ohio River has aggraded ∼4 m since aggradation began at ∼4 ka. The chronostratigraphic framework and reconstructed history developed here suggest that the lower Ohio River is highly sensitive to glacial–interglacial transitions and abrupt Holocene climate change and responds rapidly to these allogenic forcings.

Indiana, Kentucky↗

The ecology of river ice

Many of the world's rivers are ice-covered during winter months but increasing evidence indicates that the extent of river ice will shift substantially as winters warm. However, our knowledge of rivers during winter lags far behind that of the growing season, limiting our understanding of how ice loss will affect rivers. Physical, chemical, and biological processes change from headwaters to large rivers; thus, we expect ice processes and resulting effects on the ecology of rivers could also vary with river size, as a result of the associated changes in geomorphology, temperature regimes, and connectivity. To conceptualize these relationships, we review typically disparate literature on ice processes and winter ecology and compare what is known in the smallest and largest rivers. In doing so, we show that our ability to link ice with ecology across river networks is made difficult by a primary focus on ice processes in larger rivers and a lack of study of ecosystem processes during winter. To address some of these gaps, we provide new scenarios of river ice loss and analyses of how the annual importance of winter gross primary productivity (GPP) varies with river size. We show projected ice loss varied with large-scale watershed characteristics such as north-south orientation and that the importance of winter to annual GPP was greatest in the smallest rivers. Finally, we highlight information needed to fill knowledge gaps on winter across river networks and improve our understanding of how rivers may change as climate and ice regimes shift.

JGR Biogeosciences↗

A high-resolution, daily hindcast (1990-2021) of Alaskan river discharge and temperature from coupled and optimized physical models

Water quality and freshwater ecosystems are affected by river discharge and temperature. Models are frequently used to estimate river temperature on large spatial and temporal scales due to limited observations of discharge and temperature. In this study, we use physically based river routing and temperature models to simulate daily discharge and river temperature for rivers in 138 basins in Alaska, including the entire Yukon River basin, from 1990–2021. The river temperature model was optimized for ice free months using a surrogate-based model optimization method, improving model performance at uncalibrated river gages. A common statistical model relating local air and water temperature was used as a benchmark. The physically based river temperature model exhibited superior performance compared to the benchmark statistical model after optimization, suggesting river temperature model optimization could become more routine. The river temperature model demonstrated high sensitivity to air temperature and model parameterization, and lower sensitivity to discharge. Validation of the models showed a Kling-Gupta Efficiency of 0.46 for daily river discharge and a root mean square error of 2.04°C for daily river temperature, improving on the non-optimized physical model and the benchmark statistical model, which had root mean square errors of 3.24 and 2.97°C, respectively. The simulation shows that rivers in northern Alaska have higher maximum summer temperatures and more variability than rivers in the Central and Southern regions. Furthermore, this framework can be readily adapted for use across models and regions.

Alaska↗

Dispersal of river sediment in the Southern California Bight

The rivers of Southern California deliver episodic pulses of water, sediment, nutrients, and pollutants to the region's coastal waters. Although river-sediment dispersal is observed in positively buoyant (hypopycnal) turbid plumes extending tens of kilometers from river mouths, very little of the river sediment is found in these plumes. Rather, river sediment settles quickly from hypopycnal plumes to the seabed, where transport is controlled by bottom-boundary layer processes, presumably including fluid-mud (hyperpycnal) gravity currents. Here we investigate the geographical patterns of river-sediment dispersal processes by examining suspended-sediment concentrations and loads and the continental shelf morphology offshore river mouths. Throughout Southern California, river sediment is discharged at concentrations adequately high to induce enhanced sediment settling, including negative buoyancy. The rivers draining the Western Transverse Range produce suspended-sediment concentrations that are orders of magnitude greater than those in the urbanized region and Peninsular Range to the south, largely due to differences in sediment yield. The majority of sediment discharge from the Santa Clara River and Calleguas Creek occurs above the theoretical negative buoyancy concentration (>40 g/l). These rivers also produce event sediment loading as great as the Eel River, where fluid-mud gravity currents are observed. The continental shelf of Southern California has variable morphology, which influences the ability to transport via gravity currents. Over half of the rivers examined are adjacent to shelf slopes greater than 0.01, which are adequately steep to sustain auto-suspending gravity currents across the shelf, and have little (<10 m) Holocene sediment accumulation. Shelf settings of the Ventura, Santa Clara, and Tijuana Rivers are very broad and low sloped (less than 0.004), which suggests that fluid-mud gravity currents could transport across these shelves, albeit slowly (??10 cm/s) and only with adequate wave-generated shear stress and sediment loading. Calleguas Creek is unique in that it discharges directly into a steepsloped canyon (greater than 0.1) that should allow for violent auto-suspending gravity currents. In light of this, only one shelf setting-the Santa Clara and Ventura-has considerable Holocene sediment accumulation (exceeding 60 m), and here we show that the morphology of this shelf is very similar to an equilibrium shape predicted by gravity-current sediment transport. Thus, we conclude that a wide distribution of river-shelf settings occur in the Southern California Bight, which will directly influence sediment dispersal processes-both dilute suspended and gravity-current transport-and sediment-accumulation patterns. ?? 2009 The Geological Society of America.

Special Paper of the Geological Society of America↗

Assessing the migratory histories, trophic positions, and conditions of lake sturgeon in the St. Croix and Mississippi Rivers using fin ray microchemistry, stable isotopes, and fatty acid profiles

Background Reproducing populations of invasive carps ( Hypophthalmichthys spp.) could alter aquatic food webs and negatively affect native fishes in the Mississippi National River and Recreation Area (MISS) and the St. Croix National Scenic Riverway (SACN). However, proposed invasive carp barriers may also threaten populations of native migratory fishes by preventing movements of fish between rivers that are necessary for life history requirements. In this study, nonlethal chemical techniques were used to provide baseline data related to the condition, trophic position, and migratory histories of lake sturgeon ( Acipenser fulvescens ) captured in the Mississippi and St. Croix Rivers. Results Fish length and weight measurements and age estimates determined from pectoral fin rays demonstrated that lake sturgeon from the Mississippi River had greater lengths-at-age compared to sturgeon from the St. Croix River. However, length–weight relations were similar for sturgeon from the Mississippi and St. Croix Rivers. Lake sturgeon captured from different locations had distinguishable fatty acid signatures, and stable isotope analyses demonstrated that lake sturgeon from the Mississippi River generally feed at a higher trophic level than those in the St. Croix River. Strontium-to-calcium ratios (Sr:Ca) from fin ray cross sections indicated that sturgeon captured from the Mississippi River had higher Sr:Ca values than sturgeon captured from the St. Croix River, and natal origins and capture locations were not significantly different among sturgeon captured within individual rivers. Most sturgeon were captured in water with a similar Sr:Ca signature as their natal waters, indicating that there is some separation between populations of lake sturgeon in the St. Croix and Mississippi Rivers. However, Sr:Ca data indicated substantial variation in movement patterns among individual lake sturgeon, indicating that populations interact through migrations of individual fish between rivers. Conclusions Study results provide baseline condition and food web structure index data for assessing changes in lake sturgeon populations should invasive carps become established in these areas of the Mississippi and St. Croix Rivers. Controlled-exposure and telemetry studies would help verify and enhance the relations between Sr:Ca signatures in water and lake sturgeon pectoral fin rays to further assess mixing of sturgeons between rivers.

Minnesota, Wisconsin↗

Summary of annual records of chemical quality of water of the Arkansas River in Oklahoma and Arkansas; 1945-52, a progress report

The Arkansas River is subject to many types of pollution downstream from the Oklahoma-Kansas State line, and its inferior quality together with its erratic flow pattern has caused it to be largely abandoned as a source of municipal and industrial water supply. Currently, the Arkansas River is not directly used as a source of public supply in any part of the basin in either Oklahoma or Arkansas. In general, the chemical concentration of the river water increases downstream from the Oklahoma-Kansas State line to Tulsa because of tributary inflow from the Salt Fork Arkansas River and the Cimarron River, both streams being sources of large amounts of natural salts and industrial wastes. A decrease in concentration of dissolved solids is noted downstream from Tulsa due to tributary inflow from the Verdigris, Neosho, and Illinois Rivers; another increase in concentration occurs with tributary inflow from the Canadian River, which is largely oilfield wastes. A progressive decrease in concentration is noted as the river flows through Arkansas to the Mississippi River, because all major tributaries below the Canadian River have a dilution effect upon the chemical concentration of the Arkansas River water. Proposals for storage and regulating reservoirs on the Arkansas River in both Oklahoma and Arkansas have been made by the Corps of Engineers and others. Additional proposals are being considered in the present Arkansas-White-Red River Basin Inter-Agency Sub-Committee studies. If constructed, these reservoirs will provide an opportunity for control of flow and beneficial use of Arkansas River water both at and downstream from these sites. Impoundment alone will greatly reduce the extremes in water quality, and by reasonable control of municipal and industrial wastes, the water at some points on the river would be comparable in quality to many existing municipal and industrial supplies in the basin.

Circular↗

Lead-rich sediments, Coeur d'Alene River Valley, Idaho: area, volume, tonnage, and lead content

In north Idaho, downstream from the Coeur d?Alene (CdA) silver-lead-zinc mining district, lead-rich sediments, containing at least 1,000 ppm of lead, cover approximately 61 km2 (or 73 percent) of the 84-km2 floor of the CdA River valley, from the confluence of its North and South Forks to the top of its delta-front slope, in CdA Lake. Concentrations of lead (Pb) in surface sediments range from 15 to about 38,500 ppm, and average 3,370 ppm, which is 112 times the mean background concentration (30 ppm) of Pb in uncontaminated sediments of the CdA and St. Joe River valleys. Most of the highest concentrations of Pb are in sediments within or near the river channel, or near the base of the stratigraphic section of Pb-rich sediments. Ranges of Pb concentration in Pb-rich sediments gradually decrease with increasing distance from the river and its distributaries. Ranges of thickness of Pb-rich sediments generally decrease abruptly with increasing distance from the river, from about 3 + 3 m in the river channel to about 1 + 1m on upland riverbanks, levees and sand splays, to about 0.3 + 0.3 m in back-levee marshes and lateral lakes. Thickness of Pb-rich dredge spoils (removed from the river and deposited on Cataldo-Mission Flats) is mostly in the range 4 + 4 m, thinning away from an outfall zone north and west of the river, near the formerly dredged channel reach near Cataldo Landing. We attribute lateral variation in ranges of thickness and Pb content of Pb-rich sediments to the dynamic balance between decreasing floodwater flow velocity with increasing distance from the river and the quantity, size, density, and Pb content of particles mobilized, transported, and deposited. We present alternative median- and mean-based estimates of the volume of Pbrich sediments, their wet and dry tonnage, and their tonnage of contained Pb. We calculate separate pairs of estimates for 23 Estimation Units, each of which corresponds to a major depositional environment, divided into down-valley segments. We favor median-based estimates of the thickness and thickness-interval weighted-average Pb concentration, because uncommonly thick and Pb-rich sections may excessively influence mean estimates. Nevertheless, data from partial sections of Pb-rich sediments are included in most estimates, and these tend to reduce both median- and mean-based estimates. Median-based estimates indicate a volume of 32 M m3 of Pb-rich sediments in the CdA River valley, with a dry tonnage of 47 + 4 M t, containing 250 + 75 kt of Pb (considering analytical uncertainties only). An equivalent tonnage of dry CdA River valley sediments of the pre-mining era, with the mean background concentration of 30 ppm of Pb, would contain about 1.4 kt of Pb. Thus, the amount of Pb added to CdA River valley sediments deposited since the onset of mining is estimated as 249 + 75 kt of Pb, or about 99.5 percent of the estimated Pb contained. Of an estimated 850 + 10 kt of Pb lost to streams as a result of mining-related activities, an estimated total of 739 + 319 kt of Pb has been deposited in sediments of the South Fork drainage basin, the CdA River valley, and the bottom of CdA Lake (combined). Based on mid-range values from a set of preferred estimates with uncertainty ranges up to + 50 percent, roughly 24 percent of the 850 + 10 kt of mining-derived Pb lost to streams has been added to sediments of the South Fork drainage basin, 29 percent to sediments of the CdA River valley floor, and 34 percent to sediments on the bottom of CdA Lake. This amounts to roughly 87 percent of the Pb lost to streams, not including Pb contained in sediments of the North Fork drainage basin and the Spokane River valley, the tonnages of which have not yet estimated.

Open-File Report↗

Simulated changes in salinity in the York and Chickahominy Rivers from projected sea-level rise in Chesapeake Bay

As a result of climate change and variability, sea level is rising throughout the world, but the rate along the east coast of the United States is higher than the global mean rate. The U.S. Geological Survey, in cooperation with the City of Newport News, Virginia, conducted a study to evaluate the effects of possible future sea-level rise on the salinity front in two tributaries to Chesapeake Bay, the York River, and the Chickahominy/James River estuaries. Numerical modeling was used to represent sea-level rise and the resulting hydrologic effects. Estuarine models for the two tributaries were developed and model simulations were made by use of the Three-Dimensional Hydrodynamic-Eutrophication Model (HEM-3D), developed by the Virginia Institute of Marine Science. HEM-3D was used to simulate tides, tidal currents, and salinity for Chesapeake Bay, the York River and the Chickahominy/James River. The three sea-level rise scenarios that were evaluated showed an increase of 30, 50, and 100 centimeters (cm). Model results for both estuaries indicated that high freshwater river flow was effective in pushing the salinity back toward Chesapeake Bay. Model results indicated that increases in mean salinity will greatly alter the existing water-quality gradients between brackish water and freshwater. This will be particularly important for the freshwater part of the Chickahominy River, where a drinking-water-supply intake for the City of Newport News is located. Significant changes in the salinity gradients for the York River and Chickahominy/James River estuaries were predicted for the three sea-level rise scenarios. When a 50-cm sea-level rise scenario on the York River during a typical year (2005) was used, the model simulation showed a salinity of 15 parts per thousand (ppt) at river kilometer (km) 39. During a dry year (2002), the same salinity (15 ppt) was simulated at river km 45, which means that saltwater was shown to migrate 6 km farther upstream during a dry year than a typical year. The same was true of the Chickahominy River for a 50-cm sea-level rise scenario but to a greater extent; a salinity of 4 ppt was simulated at river km 13 during a typical year and at river km 28 during a dry year, indicating that saltwater migrated 15 km farther upstream during a dry year. Near a drinking-water intake on the Chickahominy River, for a dry year, salinity is predicted to more than double for all three sea-level rise scenarios, relative to a typical year. During a typical year at this location, salinity is predicted to increase to 0.006, 0.07, and more than 2 ppt for the 30-, 50-, and 100-cm rise scenarios, respectively.

Virginia↗

Comparison of historical streamflows to 2013 Streamflows in the Williamson, Sprague, and Wood Rivers, Upper Klamath Lake Basin, Oregon

In 2013, the Upper Klamath Lake Basin, Oregon, experienced a dry spring, resulting in an executive order declaring a state of drought emergency in Klamath County. The 2013 drought limited the water supply and led to a near-total cessation of surface-water diversions for irrigation above Upper Klamath Lake once regulation was implemented. These conditions presented a unique opportunity to understand the effects of water right regulation on streamflows. The effects of regulation of diversions were evaluated by comparing measured 2013 streamflow with data from hydrologically similar years. Years with spring streamflow similar to that in 2013 measured at the Sprague River gage at Chiloquin from water years 1973 to 2012 were used to define a Composite Index Year (CIY; with diversions) for comparison to measured 2013 streamflows (no diversions). The best-fit 6 years (1977, 1981, 1990, 1991, 1994, and 2001) were used to determine the CIY. Two streams account for most of the streamflow into Upper Klamath Lake: the Williamson and Wood Rivers. Most streamflow into the lake is from the Williamson River Basin, which includes the Sprague River. Because most of the diversion regulation affecting the streamflow of the Williamson River occurred in the Sprague River Basin, and because of uncertainties about historical flows in a major diversion above the Williamson River gage, streamflow data from the Sprague River were used to estimate the change in streamflow from regulation of diversions for the Williamson River Basin. Changes in streamflow outside of the Sprague River Basin were likely minor relative to total streamflow. The effect of diversion regulation was evaluated using the “Baseflow Method,” which compared 2013 baseflow to baseflow of the CIY. The Baseflow Method reduces the potential effects of summer precipitation events on the calculations. A similar method using streamflow produced similar results, however, despite at least one summer precipitation event. The result of the analysis estimates that streamflow from the Williamson River Basin to Upper Klamath Lake increased by approximately 14,100 acre-feet between July 1 and September 30 relative to prior dry years as a result of regulation of surface-water diversions in 2013. Quantifying the change in streamflow from regulation of diversion for the Wood River Basin was likely less accurate due to a lack of long-term streamflow data. An increase in streamflow from regulation of diversions in the Wood River Basin of roughly 5,500 acre-feet was estimated by comparing the average August and September streamflow in 2013 with historical August and September streamflow. Summing the results of the estimated streamflow gain of the Williamson River Basin (14,100 acre-feet) and Wood River (5,500 acre-feet) gives a total estimated increase in streamflow into Upper Klamath Lake resulting from the July 1–September 2013 regulation of diversions of approximately 19,600 acre-feet.

Oregon↗

Calibration of the Stream Salmonid Simulator (S3) model to estimate annual survival, movement, and food consumption by juvenile Chinook salmon (Oncorhynchus tshawytscha) in the restoration reach of the Trinity River, California, 2006–18

Executive Summary The Trinity River is managed in two sections: (1) from the upper 64-kilometer “restoration reach” downstream from Lewiston Dam to the confluence with the North Fork Trinity River, and (2) the 120-kilometer lower Trinity River downstream from the restoration reach. The Stream Salmonid Simulator (S3) has been previously applied to these reaches and the Klamath River. To estimate fish growth, past S3 calibration efforts in the Trinity and Klamath Rivers used maximum likelihood methods that considered only the abundance of juvenile Chinook salmon ( Oncorhynchus tshawytscha ) passing a fish trap to estimate survival and movement parameters, but not fish consumption. Previous calibrations did not estimate the average proportion of maximum consumption ( C y ) when estimating survival ( S y ) and movement ( M 0 y ) parameters across years ( y ) of data, but because no other information was available in the literature a fixed value of C y =0.66 was assumed. Therefore, the goal of this report is to present an alternative approach that calibrates the S3 model to multivariate data (that is, abundance and size), enabling the estimation of the average proportion of maximum consumption, in conjunction with survival and movement parameters for a particular migration year. We fit the S3 model to individual years of weekly trap abundance estimates and mean fish sizes (fork length) at the Pear Tree Gulch (hereafter referred to as Pear Tree) fish trap representing the restoration reach. We used the Earth Mover’s Distance (EMD) as the objective value to be minimized in parameter optimization. This approach estimated survival, movement, and consumption parameters for each migration year. Because we had information on the abundance of natural and hatchery produced juvenile salmon at the fish traps, we estimated survival and movement for natural and hatchery fish. S3 is a deterministic life-stage-structured population model that tracks daily growth, movement, and survival of juvenile Chinook Salmon. A key theme of the model is that river discharge affects habitat availability and capacity, which in turn drives density-dependent population dynamics. To explicitly link population dynamics to habitat quality and quantity, the river environment is constructed as a one-dimensional series of linked habitat units, each of which has an associated daily timeseries of discharge, water temperature, and useable habitat area or carrying capacity. In turn, the physical characteristics of each habitat unit and the number of fish occupying each unit drive survival and growth within each habitat unit and movement of fish among habitat units. The physical template of the restoration reach of the Trinity River was classified into 356 meso-habitat units comprised of runs, riffles, and pools. For each habitat unit, we developed a timeseries of daily discharge, water temperature, amount of available spawning habitat, and fry and parr carrying capacity. Capacity time series were constructed using state-of-the-art models of spatially explicit hydrodynamics and quantitative fish habitat relationships developed for the Trinity River. These variables were then used to drive population dynamics such as egg maturation and survival, and in turn, juvenile movement, growth, and survival. We estimated movement, survival, and consumption parameters by calibrating the model to 12 years of weekly juvenile abundance estimates and fish sizes at the Pear Tree fish trap near the downstream end of the restoration reach. We estimated parameters for 12 years that included a wide range of female spawner abundances (1,414–11,494) and water year types (critically dry–extremely wet). We contrast the estimated parameters to the corresponding number of female spawners and the total annual volume of water discharged for the Trinity River (Trinity River Restoration Program; https://www.trrp.net/restoration/flows/summary/ ). The calibration consisted of replicating historical conditions as closely as possible (for example, discharge; temperature; spawner abundance, spawning location and timing, and hatchery releases), and then running the model to predict weekly abundance passing the trap location from each brood year of adults and subsequent migration year of their juvenile progeny. Because density-dependent movement was favored in past evaluations, we estimated S3 parameters based on density-independent survival and density-dependent movement. Likewise, each year’s estimated survival parameter for natural ( S N y ) and hatchery ( S H y ) fish may be interpreted as the mean daily survival probability from emergence or hatchery release to the Pear Tree fish trap. Under density dependence, the estimated movement parameter for natural ( M 0N y ) and hatchery ( M 0H y ) fish represents the intercept of the Beverton-Holt model; the probability of remaining in a habitat at near-zero abundance. We estimated C y by using EMD and incorporating abundance and fish size into model calibration. Average daily proportions of maximum consumption, , across the years were generally high (=0.640; standard deviation (SD) SD=0.176), suggesting that fish were feeding at about two-thirds of expected maximum consumption rates. This average proportion of maximum consumption,is very similar to what has been assumed (=0.66) in previous Trinity and Klamath River S3 calibration and simulation efforts. In 2017, we estimated the lowest C y , suggesting lower average consumption for juvenile salmon in high-discharge water years. When this high discharge year was excluded, there was no apparent trend in C y with annual water volume. Estimates of survival showed little trend over the range in spawner abundances, but a trend towards higher natural and hatchery fish survival with higher annual volumes of water was apparent. Over the 12 years, the average survival of hatchery fish was =0.888 (SD=0.079) and the average survival natural fish was=0.969 (SD=0.01). With respect to fish movement, we estimated higher M 0N y and M 0H y with higher annual volumes of water in the Trinity River. Higher M N0 y or M H0 y suggest greater probability of remaining in a habitat at low fish densities, with potential for density-dependent processes in movement to occur. The highest M 0N y = 0.676 was estimated during brood year 2012, and the overall average for natural fish was =0.276 (SD=0.188) and for hatchery fish was=0.467 (SD=0.235). Under the Beverton-Holt model, as M 0N y or M 0H y approach zero, there is less capacity for change in fish movement as fish density increases. The S3 model was initialized with only the spatiotemporal distribution of spawners, so it performed well at capturing the essential outmigration features that are ultimately governed by rates of growth, movement, and mortality. We used a new optimization method that could accommodate multivariate data on abundance and fish size collected at the Pear Tree fish trap, enabling the calibration of S3 to estimate five parameters for 12 separate years of data. Incorporating weekly fish size data for each year in our parameter optimization process made the estimation of C y possible and represents a step forward in the fitting of the S3 model to fish trap data for the purposes of parameter calibration and the estimation of growth parameters with respect to annual conditions. We identified lack of fit and adding important effects into the S3 model may improve the S3 estimation and simulation of water scenarios. The Trinity River Restoration Program (TRRP) Science Advisory Board recommended that the TRRP focus on developing core elements of a decision support system (DSS; Buffington and others, 2014). Toward that end, the habitat and S3 models described in this report are both core elements of the DSS. The structure of S3 makes it a particularly useful fish production model for the DSS because population dynamics are sensitive to (1) water temperature, (2) daily discharge management, and (3) habitat quality and quantity. Each of these variables are key management parameters under consideration in the TRRP. As such, the S3 model may provide valuable insights into the potentially variable effects of different management decisions on the Trinity River.

California↗

Streamflow and sediment transport in the Quillayute River basin, Washington

From October 1976 to September 1978 the U.S. Geological Survey made a reconnaissance evaluation of the fluvial-sediment transport and documented the natural streamflow characteristics in the Quillayute River basin in northwestern Washington. Most of the flow originates from the tributaries, the Soleduck, Bogachiel, and Calawah Rivers. Flow in the summer months from the Calawah River is about half that from either the Bogachiel or Soleduck Rivers. In the winter months flow from the Soleduck River is about 1 1/2 times that of the Bogachiel or Calawah Rivers. In general, the highest monthly flows during the winter are about 10 times greater than the lowest monthly flows during the summer except for the Dickey River where winter flows are about 20 times greater. Annual mean discharges may vary greatly from year to year, ranging from about 1/2 to 1 1/2 times the mean annual discharge. For the study period, the observed suspended-sediment concentration ranged from less than 1 to 2 ,150 milligrams per liter. The estimated mean annual suspended-sediment discharges were: Bogachiel River--400,000 tons (includes Calawah River); Calawah River--120,000 tons; Soleduck River--120,000 tons; Dickey River--75,000 tons; and other tributaries--10,000 tons, for a total of 606,000 tons transported annually by the Quillayute River. The estimated annual bedload of 21,000 tons was transported into the Quillayute River by the Soleduck, Bogachiel, and Dickey Rivers. (USGS)

Open-File Report↗

Water-quality data for the Talkeetna River and four streams in National Parks, Cook Inlet basin, Alaska, 1998

Five streams in the Cook Inlet Basin, Alaska, were sampled in 1998 to provide the National Park Service with baseline information on water quality. Four of these streams drain National Park Service land: Costello and Colorado Creeks in Denali National Park and Preserve, Johnson River in Lake Clark National Park and Preserve, and Kamishak River in Katmai National Park and Preserve. The fifth site was on the Talkeetna River, outside of national park boundaries. Samples of stream water, streambed sediments, and fish tissues were collected for chemical analyses. Biological and geomorphic information was also collected at each site. Nutrient concentrations in stream water were low and commonly were less than analytical detection limits. Analyses of fish tissues for 28 organochlorine compounds at Talkeetna River and Costello Creek produced just one detection. Hexachlorobenzene was detected at a concentration of 5.70 micrograms per kilogram in slimy sculpin from the Talkeetna River. Streambed sediment samples from the Talkeetna River had three organochlorine compounds at detectable levels; hexachlorobenzene was measured at 13 micrograms per kilogram and two other compounds were below the minimum reporting levels. At Colorado Creek, Johnson River, and Kamishak River, where fish samples were not collected, no organochlorine compounds were detected in streambed sediment samples. Several semivolatile organic compounds were detected at Colorado Creek and Costello Creek. Only one compound, dibenzothiophene, detected at Costello Creek at a concentration of 85 micrograms per kilogram was above the minimum reporting limit. No semivolatile organic compounds were detected at the Talkeetna, Kamishak, or Johnson Rivers. Trace elements were detected in both fish tissues and streambed sediments. Macroinvertebrate and fish samples contained few taxa at all sites. Total numbers of macroinvertebrate taxa ranged from 19 at the Johnson River to 38 at the Talkeetna River. Diptera were the most abundant and diverse order of macroinvertebrates at all sites. Total numbers of diptera taxa ranged from 8 at the Kamishak River to 19 at the Talkeetna River. Fish communities were represented by a maximum of nine taxa at the Talkeetna River and were absent at Colorado Creek. The Johnson River sampling site produced small numbers of juvenile Dolly Varden, and Costello Creek produced small numbers of both juvenile Dolly Varden and slimy sculpin.

Alaska↗

Conditions and processes affecting sand resources at archeological sites in the Colorado River corridor below Glen Canyon Dam, Arizona

This study examined links among fluvial, aeolian, and hillslope geomorphic processes that affect archeological sites and surrounding landscapes in the Colorado River corridor downstream from Glen Canyon Dam, Arizona. We assessed the potential for Colorado River sediment to enhance the preservation of river-corridor archeological resources through aeolian sand deposition or mitigation of gully erosion. By identifying locally prevailing wind directions, locations of modern sandbars, and likely aeolian-transport barriers, we determined that relatively few archeological sites are now ideally situated to receive aeolian sand supply from sandbars deposited by recent controlled floods. Whereas three-fourths of the 358 river-corridor archeological sites we examined include Colorado River sediment as an integral component of their geomorphic context, only 32 sites currently appear to have a high degree of connectivity (coupled interactions) between modern fluvial sandbars and sand-dominated landscapes downwind. This represents a substantial decrease from past decades, as determined by aerial-photograph analysis. Thus, we infer that recent controlled floods have had a limited, and declining, influence on archeological-site preservation. Within the study area, overland-flow (gully) erosion is less severe in sand landscapes with active aeolian sand than in landscapes that lack aeolian transport; gullies terminate more commonly in active sand (sand that is mobile by wind rather than stabilized by biologic soil crust). We infer that these characteristics largely result from aeolian sand transport being an effective gully-limiting and gully-annealing mechanism. Aeolian sand activity in the river corridor varies substantially as a function of reach morphology and dominant wind direction relative to the river-corridor orientation, factors that control accommodation space for river-derived sand and the modern sand supply to aeolian dunes. These attributes, together with an inverse correlation between aeolian sand activity and gully occurrence, define varying degrees of net long-term gully-erosion risk for sediment deposits and associated archeological sites in different regions of the river corridor. Over most of the river corridor, including some of the archeologically richest regions, sand is too inactive with respect to aeolian transport to anneal gullies effectively. At eight selected archeological sites that we studied with high-resolution terrestrial lidar scans for more than a year, sand loss by overland flow (gully erosion) and aeolian deflation generally exceeded deposition, such that erosion dominated over most monitoring intervals&mdash;even at four sites with strong connectivity to modern sand supply. The Glen Canyon reach of the river corridor appears especially vulnerable to gully erosion. Among the sites that we monitored in detail, erosion generally dominated over deposition to a greater degree at four Glen Canyon sites with no modern sand supply than at four Marble&ndash;Grand Canyon sites with aeolian sand supply from controlled-flood sandbars. Although gross annual-scale erosion rates were similar among the Glen Canyon sites and among the Marble&ndash;Grand Canyon sites, a relative lack of depositional processes led to greater net erosion at the Glen Canyon sites. Having found no differences in weather patterns to suggest greater erosive forcing in Glen Canyon, and no conclusively influential differences in the slope or watershed area contributing to gully formation, we attribute the greater erosion at the Glen Canyon sites to a combination of inherent geomorphic context (high terraces that do not receive modern sediment supply) and pronounced effects of postdam sediment-supply limitation. We conclude that most of the river-corridor archeological sites are at elevated risk of net erosion under present dam operations. In the present flow regime, controlled floods do not simulate the magnitude or frequency of natural floods, and are not large enough to deposit sand at elevations that were flooded at annual to decadal intervals in predam time. For archeological sites that depend upon river-derived sand, we infer elevated erosion risk owing to a combination of reduced sand supply (both fluvial and aeolian) through (1) the lower-than-natural flood magnitude, frequency, and sediment supply of the controlled-flooding protocol; (2) reduction of open, dry sand area available for wind redistribution under current normal (nonflood) dam operations, which do not include flows as low as natural seasonal low flows and do include substantial daily flow fluctuations; and (3) impeded aeolian sand entrainment and transport owing to increased riparian vegetation growth in the absence of larger, more-frequent floods. If dam operations were to increase the supply of sand available for windblown transport&mdash;for example, through larger floods, sediment augmentation, or increased fluvial sandbar exposure by low flows&mdash;and also decrease riparian vegetation, the prevalence of active aeolian sand could increase over time, and the propensity for unmitigated gully erosion could decrease. Although the evolution of river-corridor landscapes and archeological sites has been altered fundamentally by the lack of large, sediment-rich floods (flows on the order of 5,000 m 3 /s), some combination of sediment-rich flows above 1,270 m 3 /s, seasonal flows below 226 m 3 /s, and riparian-vegetation removal might increase the preservation potential for sand-dependent archeological resources in the Colorado River corridor.

Arizona↗

The fishes of Buffalo National River, Arkansas, 2001-2003

During June through September 2001 and 2002, extensive fish community sampling was conducted at 29 sites within the boundaries of Buffalo National River. Samples were collected using backpack, tote barge, and boat electrofishing equipment. Kick seining also was used at all sites. To supplement these results, samples were collected in 2003 from less typical habitats and during other seasons of the year. Ten supplemental samples were collected from the Buffalo River and five samples were collected from tributaries of the Buffalo River. During the 3 years of sampling, 66 species of fish were collected or observed from the 42 sampling sites. Stonerollers, duskystripe shiners, longear sunfish, and rainbow darters were among the more abundant fish species at most sites. Each of these species is common and abundant throughout much of the Ozark Plateaus in creeks and small rivers. Other species (for example, banded sculpin, southern redbelly dace, orangethroat darter, and Ozark minnow) were among the more abundant species at other sites. These species prefer small- to medium-sized, springfed streams or small creeks. A preliminary list of species expected to occur at Buffalo National River provided by the National Park Service incorrectly listed 47 species because of incorrect species range or habitat requirements. Upon revising this list, the inventory yielded 66 of the 78 species (85 percent). Twelve additional species not collected in 2001-2003 may occur at Buffalo National River for two primary reasons--because the species had been collected previously at the park, or because the park occurs within the known species range and habitats found at the park are suitable for the species. Although no fish species collected from Buffalo National River are federally-listed threatened or endangered species, several species collected at Buffalo National River may be of special interest to National Park Service managers and others. Ten species are endemic to the Ozark Plateaus area and most of these ten are restricted to the White River Basin. For some species the Buffalo River is a population stronghold. The yoke darter and Ozark bass are especially abundant in the Buffalo River. In Arkansas, the Ozark shiner is most abundant in the Buffalo River and, although populations of Ozark shiners are declining in Arkansas, this is not typically the case in the Buffalo River. Data from 2001-2003 indicate that gilt darters currently (2005) are less common in the Buffalo River than during the 1970's. Populations of channel catfish (and any other fish species whose movements are inhibited by the cold water temperatures of the White River) may continue to decline without remedial efforts.

Scientific Investigations Report↗

Water quality and ground-water/surface-water interactions along the John River near Anaktuvuk Pass, Alaska, 2002-2003

The headwaters of the John River are located near the village of Anaktuvuk Pass in the central Brooks Range of interior Alaska . With the recent construction of a water -supply system and a wastewater-treatment plant, most homes in Anaktuvuk Pass now have modern water and wastewater systems. The effluent from the treatment plant discharges into a settling pond near a tributary of the John River . The headwaters of the John River are adjacent to Gates of the Arctic National Park and Preserve, and the John River is a designated Wild River . Due to the concern about possible water - quality effects from the wastewater effluent, the hydrology of the John River near Anaktuvuk Pass was studied from 2002 through 2003 . Three streams form the John River at Anaktuvuk Pass : Contact Creek, Giant Creek, and the John River Tributary. These streams drain areas of 90.3 km (super 2) , 120 km (super 2) , and 4.6 km (super 2) , respectively. Water - quality data collected from these streams from 2002 -03 indicate that the waters are a calcium-bicarbonate type and that Giant Creek adds a sulfate component to the John River. The highest concentrations of bicarbonate, calcium, sodium, sulfate, and nitrate were found at the John River Tributary below the wastewater-treatment lagoon. These concentrations have little effect on the water quality of the John River because the flow of the John River Tributary is only about 2 percent of the John River flow. To better understand the ground-water/surface-water interactions of the upper John River, a numerical groundwater-flow model of the headwater area of the John River was constructed. Processes that occur during spring break-up, such as thawing of the active layer and the frost table and the resulting changes of storage capacity of the aquifer, were difficult to measure and simulate. Application and accuracy of the model is limited by the lack of specific hydrogeologic data both spatially and temporally. However, during the mid-winter and open-water periods, the model provided acceptable results and was coupled with a particle-movement model to simulate the movement and possible extent of conservative particles from the wastewater-treatment-plant lagoon.

Scientific Investigations Report↗