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At least 1,225 records · Page 68Linked to original sources
USGS1997

Effects of spring environment on nesting phenology and clutch size of Black Brant

We studied the effects of timing of spring snowmelt on nesting phenology, nest site selection, and clutch size of Black Brant (Branta bernicla nigricans) breeding at the Tutakoke river colony, Yukon-Kuskokwim Delta, Alaska. In late springs, brant nested later: however, time between peak arrival at Tutakoke and nest initiation (6 to 12 days) was similar in early and late springs. Nest initiation was more synchronized in late springs than early springs. Height of nests relative to spring meltwater levels was lower in late springs than early springs, indicating that the interval between snowmelt and nest initiation was shorten reduced availability of nest sites and increased nesting synchrony in late years may result in greater competition for available nest sites and reduced site fidelity. Clutch size was greater in late springs than in early springs. This increase in clutch size may result from greater accumulation of endogenous reserves on spring staging areas in late springs, or from demographic changes in the breeding population.

Condor↗
USGS2009

Landsat mapping of local landscape change: The satellite-era context

To set the stage for a vulnerability analysis, investigators must describe and understand the geographic context, including physical characteristics of the landscape and the political and socioeconomic milieu of the population (Jianchu et al . 2005). Vulnerability studies focus on a particular place, at a specific time through its three dimensions, exposure, sensitivity, and adaptive capacity; therefore, understanding place is essential to analyzing vulnerability. Land-use studies are essential to understanding place because they generalize human activities on the physical landscape. Essentially, land use indicates past human decisions and actions, environmental constraints, and, in some cases, gives insight into subsequent change. Like vulnerability, land use is particular to a place at a certain time, and the analysis of that land use can be used as a baseline for future change and its implications. Vulnerability and land use are linked by the concept of place and are fundamental to contemporary research on human–environment interactions. Although the literature on land use, land-use change, and climate change is extensive, the land-use component of vulnerability is usually conceptualized as a feedback mechanism to climate change: forest cutting releases carbon dioxide, which increases atmospheric carbon dioxide concentrations, which increases radiative forcing, which changes climate, and which ultimately changes land cover and subsequent land use (e.g. DeFries and Bounoua 2004; Jianchu et al . 2005; Salinger et al . 2005; Watson 2005). Moreover, land use is rarely specifically identified as a component of vulnerability.

Book chapter↗
USGS2025

Longer rorqual whale mothers produce more female offspring

Multiple hypotheses have arisen that predict how mammals with the ability to adapt fetal sex ratios should invest in male versus female offspring to maximize inclusive fitness, but large wild-population datasets necessary for testing these hypotheses are challenging to collect. We used whaling data ( n = 209 254 sexed fetuses from seven rorqual whale species) to test whether mothers with more resources to invest in offspring produce more male or female offspring. We first modelled fetal sex misidentification in the data and estimated that missexing occurred for fetuses under 30–120 cm across five of seven species. Using Bayesian generalized linear mixed models and a size-restricted dataset to account for misidentification, we estimated a 90% posterior probability that longer mothers have more female offspring overall, ranging from 77% for humpback whales to 99% for sei whales. Our results likely reflect both the difficulty of excluding small males from competition in aquatic environments and the exceptionally high costs of gestation and lactation in baleen whales.

Proceedings of the Royal Society B↗
USGS2026

Epigenetics in captivity: Restoring wild phenotypes in captive-reared salmonids

Captive rearing is a common practice for the stocking, conservation, and supplementation of fish species worldwide, but captive-reared fish can exhibit altered phenotypes leading to reduced fitness in nature compared to wild conspecifics. In salmonids, certain studies have found limited genetic differentiation between wild and captive-reared fish. However, documented changes in gene expression in hatchery fish have led scientists to investigate epigenetic mechanisms, such as DNA methylation, as a source of these differences. In this binational collaborative piece, we synthesize the knowledge and efforts of academics and government scientists to highlight how interactions between captive rearing and the epigenome elicit parallel phenotypic changes across salmonid species. We examine the known and potential links between DNA methylation and the phenotypic effects of captive rearing including changes in behavior, color, gut microbiomes, and developmental abnormalities. We review efforts to minimize these phenotypic and epigenetic effects including attempts to modify the hatchery environment and rearing protocols. We provide a framework to integrate epigenetic considerations into hatchery rearing protocols by weighing the heritable nature of DNA methylation with the goals of different captive rearing programs and explore whether minimizing the phenotypic and epigenetic effects of captive rearing is worthwhile. We examine heritability and persistence of epigenetic effects, and we propose the exploitation of heritable bet-hedging as an epigenetic buffer to increase post-release survival. We also suggest novel applications of epigenomic biomarkers as a non-lethal method for post-release monitoring. Ultimately, collaborative multi-disciplinary research across species is needed to understand the comprehensive effects of captive rearing, reduce the ecological impacts of captive fish in the wild, and increase population resilience. Integrating epigenetics into fish hatchery management will provide new opportunities for optimizing and improving captive rearing.

Evolutionary Applications↗
USGS1999

Yucca Mountain as a Radioactive-Waste Repository

Yucca Mountain straddles the west boundary of the Nevada Test Site in an arid, remote, and thinly populated region of southwestern Nevada. It is the potential site of a monitored geologic repository for the Nation’s commercial and military spent nuclear fuel, high-level radioactive waste derived from reprocessing of uranium and plutonium, surplus plutonium, and other nuclear-weapons materials. (Collectively, these radioactive materials are known as high-level waste [HLW] and are to be distinguished from the low-level radioactive waste to be stored at the recently opened Waste Isolation Pilot Plant in southeastern New Mexico.) Tens of thousands of metric tons of HLW is presently stored at more than a hundred sites in 40 States (fig. 1). The fundamental rationale for a geologic repository for radioactive materials is to securely isolate them from the environment and its occupants to the greatest extent possible.

Nevada↗
USGS2026

Morphodynamics of snow barchans at Concordia Station, Antarctica

Barchans are crescent-shaped dunes that form and migrate under unimodal wind regimes in areas of low sediment availability. While sand barchan morphodynamics has been extensively studied, snow barchans remain poorly documented. Here, using hourly time-series images taken near Concordia Station, Antarctica, we measure the sizes (lengths 0.3 m to 13 m, widths 0.4 m to 7.5 m) and migration rates (0.13 m h −1 to 3.5 m h −1 ) of 44 populations of snow barchans during 2017–2022. We compare this dataset with established height–velocity and length-width relationships for sand barchans in both air and water. Our results show that snow barchans follow the same scaling as sand barchans, allowing us to estimate a characteristic sintering (bonding of snow particles) time of about one day. This sintering process limits the size of snow barchans when active, reduces their aspect ratios, and, once wind falls below the transport threshold, explains their preservation over a few years. During wind events, migrating barchans are too small to maintain their shape and orientation, making them highly responsive to fluctuations in wind direction. Thus, studying snow barchans improves understanding of an elementary bedform encountered in multiple environments and also of the surface properties of snow on different timescales, offering insights into snow accumulation and wind-blown snow in ice cores.

Geomorphica↗
USGS2017

Effect of substrate size on sympatric sand darter benthic habitat preferences

The western sand darter, Ammocrypta clara , and the eastern sand darter, A. pellucida , are sand-dwelling fishes that have undergone range-wide population declines, presumably owing to habitat loss. Habitat use studies have been conducted for the eastern sand darter, but literature on the western sand darter remains sparse. To evaluate substrate selection and preference, western and eastern sand darters were collected from the Elk River, West Virginia, one of the few remaining rivers where both species occur sympatrically. In the laboratory, individuals were given the choice to bury into five equally available and randomly positioned substrates ranging from fine sand to granule gravel (0.12–4.0 mm). The western sand darter selected for coarse and medium sand, while the eastern sand darter was more of a generalist selecting for fine, medium, and coarse sand. Substrate selection was significantly different ( p = 0.02) between species in the same environment, where the western sand darter preferred coarser substrate more often compared to the eastern sand darter. Habitat degradation is often a limiting factor for many species of rare freshwater fish, and results from this study suggest that western and eastern sand darters may respond differently to variations in benthic substrate composition.

West Virginia↗
USGS1998

Water-quality assessment of the Upper Mississippi River Basin, Minnesota and Wisconsin: Polychlorinated biphenyls in common carp and walleye fillets, 1975-95

Spatial and temporal distribution of polychlorinated biphenyls (PCBs) in common carp ( Cyprinus carpio ) and walleye ( Stizostedion vitreum ) fillets from rivers in the Upper Mississippi River Basin upstream of the outlet of Lake Pepin are summarized. PCB concentrations in common carp and walleye fillets collected from rivers in the UMIS during 1975-95 by the Minnesota Fish Contaminant Monitoring Program (MFCMP) and the Wisconsin Department of Natural Resources (WDNR) were analyzed. PCBs in fish tissue are of concern because PCBs are potentially toxic, teratogenic, and are linked to poor fetal development and endocrine disruption in fish and other animals including humans, that consume fish. This summary was part of an analysis of historical data for the Upper Mississippi River (UMIS) study unit of the National Water-Quality Assessment (NAWQA) Program. The UMIS study unit is a 47,000 square-mile basin that includes the drainage of the Mississippi River upstream of the outlet of Lake Pepin and encompasses the Twin Cities metropolitan area. PCB concentrations for individual samples at all sites ranged from 0.07 to 33.0 milligrams per kilograms (mg/kg) for common carp and from 0.07 to 9.8 mg/kg for walleye during 1975-95. During 1975-79 and 1980-87, 10 and 4 percent of walleye samples and 45 and 36 percent of common carp samples, respectively, exceeded the U.S. Food and Drug Administration guideline of 2 mg/kg PCB in fish tissue. PCB concentrations in individual common carp and walleye samples were below 2 mg/kg after 1987. Median PCB concentrations at individual sites and within stream segments were generally greatest in common carp and walleye from Mississippi River segments in the TCMA during 1975-79 and 1980-87. There was a significant difference among lipid-normalized PCB (LNPCB) concentrations in common carp, considering all stream segments combined, during all three time periods (1975-79, 1980-87, and 1988-95). LNPCB concentrations in common carp and walleye at those stream segments upstream or outside the TCMA were generally lower than those in UMR segments within the TCMA. The spatial distribution of PCB and LNPCB concentrations in common carp and walleye correspond with historical point- and non point-source PCB inputs in the densely populated TCMA, and concentrations in fish were greater in areas that historically had elevated PCB concentrations in bed sediment. Median PCB concentrations in common carp and walleye at individual sites were greatest during 1975-79 and 1980-87, and least during 1988-95 at most sites. Most of the river segments exhibited over 80 percent decline in median PCB concentrations in common carp and walleye between the 1975-79 and 1988-95 time periods. The results from these temporal analyses were similar to those of other studies in the United States and in Minnesota and Wisconsin that reported a significant downward trend in PCB concentrations in fish. Although, PCB concentrations have decreased during 1975-95, low concentrations of PCBs still remain in the aquatic environment despite the fact that PCBs were banned nearly 20 years ago.

Minnesota, Wisconsin↗
USGS2023

Host vs. pathogen evolutionary arms race: Effects of exposure history on individual response to a genetically diverse pathogen

Introduction: Throughout their range, bighorn sheep ( Ovis canadensis ) populations have seen significant disease-associated declines. Unfortunately, understanding of the underlying epidemiological processes driving the disease dynamics in this species has hindered conservation efforts aimed at improving the health and long-term viability of these populations. Individual response to pathogen exposure emerges from dynamic interactions between competing evolutionary processes within the host and pathogen. The host’s adaptive immune system recognizes pathogens and mounts a defensive response. Pathogens have evolved strategies to overcome adaptive immune defenses including maintaining high genetic diversity through rapid evolution. The outcomes of this evolutionary warfare determine the success of pathogen invasion of the host and ultimately the success of conservation efforts. Methods: During an epizootic dominated by a single strain, we explore these host-pathogen dynamics by examining the variation in effects of pathogen invasion on captive bighorn sheep with differing histories of exposure to genetically diverse strains of Mycoplasma ovipneumoniae (Movi). We monitored clinical signs of disease and sampled animals and their environment to detect spread of Movi among 37 bighorn sheep separated into nine pens based on known exposure Results: We documented Movi transmission within and across pens and we detected Movi DNA in air, water, and invertebrate samples. Higher levels of antibody to Movi prior to the epizootic were associated with a lower likelihood of presenting clinical signs of pneumonia. Nonetheless, higher antibody levels in symptomatic individuals were associated with more severe progressive disease, increased probability and speed of pneumonia-induced mortality, and reduced likelihood of returning to a healthy state. Bighorn sheep with previous exposure to a strain other than the predominant epizootic strain were more likely to recover. Discussion: Our results indicate that Movi-strain variability was sufficient to overwhelm the adaptive host immunological defenses. This outcome indicates, in free-ranging herds, past exposure is likely insufficient to protect bighorn sheep from infection by new Movi strains, although it influences the progression of disease and recovery within the herd. Therefore, given Movi-strain variability and the lack of immunological protection from past exposure, focusing management efforts on minimizing the introduction of Movi into bighorn herds, through separation of domestic and bighorn sheep and avoidance of management activities that create commingling of bighorn sheep carrying differing Movi strains, will likely be the most effective approach for reducing the effects of disease and achieving bighorn sheep conservation goals.

Idaho, Oregon, South Dakota, Washington↗
USGS2024

The effects of wastewater reuse on smallmouth bass (Micropterus dolomieu) relative abundance in the Shenandoah River Watershed, USA

Municipal and industrial wastewater effluent is an important source of water for lotic systems, especially during periods of low flow. The accumulated wastewater effluent flows—expressed as a percentage of total streamflow (ACCWW%)—contain chemical mixtures that pose a risk to aquatic life; fish may be particularly vulnerable when chronically exposed. Although there has been considerable focus on individual-level effects of exposure to chemical mixtures found in wastewater effluent, scaling up to population-level effects remains a challenging component needed to better understand the potential consequences of exposure in wild populations. This may be particularly important under a changing climate in which wastewater reuse could be essential to maintain river flows. We evaluated the effects of chronic exposure to wastewater effluent, as measured by ACCWW%, on the relative abundance of young-of-year (YOY), juvenile, and adult smallmouth bass ( Micropterus dolomieu ) populations in the Shenandoah River Watershed (USA). We found that increases in ACCWW% in the previous year and during the prespawn period were negatively correlated with the relative abundance of YOY, resulting in an average 41% predicted decrease in abundance (range = 0.5%–94% predicted decrease in abundance). This lagged effect suggests that adult fish reproductive performance may be compromised by chemical exposure during periods of high ACCWW%. No relationships between ACCWW% and juvenile or adult relative abundance were found, suggesting that negative effects of ACCWW% on YOY abundance may be offset due to compensatory mechanisms following higher ACCWW% exposure. Understanding the effects of wastewater effluent exposure at multiple levels of biological organization will help in the development of management strategies aimed at protecting aquatic life. Environ Toxicol Chem 2024;43:1138–1148. © 2024 The Authors. Environmental Toxicology and Chemistry published by Wiley Periodicals LLC on behalf of SETAC. This article has been contributed to by U.S. Government employees and their work is in the public domain in the USA.

Virginia↗
USGS2016

Factors affecting post-control reinvasion by seed of an invasive species, Phragmites australis , in the central Platte River, Nebraska.

Invasive plants, such as Phragmites australis , can profoundly affect channel environments of large rivers by stabilizing sediments and altering water flows. Invasive plant removal is considered necessary where restoration of dynamic channels is needed to provide critical habitat for species of conservation concern. However, these programs are widely reported to be inefficient. Post-control reinvasion is frequent, suggesting increased attention is needed to prevent seed regeneration. To develop more effective responses to this invader in the Central Platte River (Nebraska, USA), we investigated several aspects of Phragmites seed ecology potentially linked to post-control reinvasion, in comparison to other common species: extent of viable seed production, importance of water transport, and regeneration responses to hydrology. We observed that although Phragmites seed does not mature until very late in the ice-free season, populations produce significant amounts of viable seed (>50 % of filled seed). Most seed transported via water in the Platte River are invasive perennial species, although Phragmites abundances are much lower than species such as Lythrum salicaria , Cyperus esculentus and Phalaris arundinacea . Seed regeneration of Phragmites varies greatly depending on hydrology, especially timing of water level changes. Flood events coinciding with the beginning of seedling emergence reduced establishment by as much as 59 % compared to flood events that occurred a few weeks later. Results of these investigations suggest that prevention of seed set (i.e., by removal of flowering culms) should be a priority in vegetation stands not being treated annually. After seeds are in the seedbank, preventing reinvasion using prescribed flooding has a low chance of success given that Phragmites can regenerate in a wide variety of hydrologic microsites.

Nebraska↗
USGS1995

Genetic strategies for lake trout rehabilitation: a synthesis

The goal of lake trout rehabilitation efforts in the Great Lakes has been to reestablish inshore lake trout ( Salvelinus namaycush ) populations to self-sustaining levels. A combination of sea lamprey control, stocking of hatchery-reared lake trout, and catch restrictions were used to enhance remnant lake trout stocks in Lake Superior and reestablish lake trout in Lakes Michigan, Huron, Erie, and Ontario. Genetic diversity is important for the evolution and maintenance of successful adaptive strategies critical to population restoration. The loss of genetic diversity among wild lake trout stocks in the Great Lakes imposes a severe constraint on lake trout rehabilitation. The objective of this synthesis is to address whether the particular strain used for stocking combined with the choice of stocking location affects the success or failure of lake trout rehabilitation. Poor survival, low juvenile recruitment, and inefficient habitat use are three biological impediments to lake trout rehabilitation that can be influenced by genetic traits. Evidence supports the hypothesis that the choices of appropriate lake trout strain and stocking locations enhance the survival of lake trout stocked into the Great Lakes. Genetic strategies proposed for lake trout rehabilitation include conservation of genetic diversity in remnant stocks, matching of strains with target environments, stocking a greater variety of lake trout phenotypes, and rehabilitation of diversity at all trophic levels.

Journal of Great Lakes Research↗
USGS2023

Implications of tree expansion in shrubland ecosystems for two generalist avian predators

Shrublands globally have undergone structural changes due to plant invasions, including the expansion of native trees. Removal of native conifer trees, especially juniper ( Juniperus spp .), is occurring across the Great Basin of the western U.S. to support declining sagebrush ( Artemisia spp.) habitats and associated wildlife species, such as greater sage-grouse ( Centrocercus urophasianus ). One justification for conifer removal is that it may improve survival of sagebrush-associated wildlife by reducing the abundance of avian predators. However, the relationship between conifer expansion and predator distributions has not been explicitly evaluated. Further, although structural characteristics of habitat are important for generalist predators, overall prey abundance may also affect habitat use by predators. We examined habitat use of common ravens ( Corvus corax ) and red-tailed hawks ( Buteo jamaicensis ), two generalist predators whose populations are increasing in western North America, to variation in structural characteristics and prey distributions in sagebrush habitat that has experienced conifer expansion. Structural characteristics of habitat were important predictors of habitat use for both ravens and red-tailed hawks, whereas measures of prey abundance were unimportant for both species likely because generalist predators can use a wide variety of food resources. Ravens, but not red-tailed hawks, responded positively to increasing cover of juniper and the probability of habitat use was highest (> 0.95) where juniper cover within 100 m was > 20%. Habitat use by red-tailed hawks, but not ravens, was greater near cliffs but was not associated with juniper cover. Our study suggests that the removal of conifer in similar environments may lower the probability of habitat use for ravens, a common predator with significant impacts on many prey species. Therefore, we suggest conifer removal may improve sage-grouse reproductive success and survival depending on responses to conifer removal from other predators. Our results may be reflective of similar changes in rangeland ecosystems around the world undergoing expansion of conifer and other woody vegetation. Though species identities differ from sagebrush habitats, generalist avian predators in other habitats may have similar relationships with structural resources.

Idaho↗
USGS2004

Use of a latitudinal gradient in bald cypress (Taxodium distichum) production to examine physiological controls of biotic boundaries and potential responses to environment change

Aim: Predictions of vegetation change with global warming require models that accurately reflect physiological processes underlying growth limitations and species distributions. However, information about environmental controls on physiology and consequent effects on species boundaries and ecosystem functions such as production is limited, especially for forested wetlands that are potentially important carbon sinks. Location: The bald cypress (Taxodium distichum) region of the south-eastern United States was studied to examine how production of an important forested wetland varies with latitude and temperature as well as local hydrology. Methods: We used published data to analyse litter production across a latitudinal gradient from 26.2 to 37.8?? N to determine how bald cypress swamps might respond to alternate climate conditions and what changes might occur throughout the distributional range. Results: Litterfall rates followed a bell shaped curve, indicating that production was more limited at the distributional boundaries (c. 225 g/m2 year-1) compared to the mid-range (795-1126 g/m2 year-1). This pattern suggests that conditions are sub-optimal near both boundaries and that the absence of populations outside this latitudinal range may be largely due to physiological constraints on the carbon balance of dominant species. While dispersal limitations cannot be totally discounted, competition with other wetland types at the extremes of the range does not seem likely to be important because the relative basal area of bald cypress does not decrease near the edges of the range. Impaired hydrology depressed production across the entire range, but more in the south than the north. Main conclusions: Our findings suggest that (1) physiological limitations constrain biotic boundaries of bald cypress swamps; (2) future changes in global temperature would affect litter production in a nonlinear manner across the distributional range; (3) local changes in hydrology may interact with climate to further reduce litter production, particularly at lower latitudes; and (4) southernmost forests could be extirpated if environmental conditions compromise carbon balance and water-use efficiency of trees. ?? 2004 Blackwell Publishing Ltd.

Global Ecology and Biogeography↗
USGS2014

From hybrid swarms to swarms of hybrids

Science has shown that the introgression or hybridization of modern humans ( Homo sapiens ) with Neanderthals up to 40,000 YBP may have led to the swarm of modern humans on earth. However, there is little doubt that modern trade and transportation in support of the humans has continued to introduce additional species, genotypes, and hybrids to every country on the globe. We assessed the utility of species distributions modeling of genotypes to assess the risk of current and future invaders. We evaluated 93 locations of the genus Tamarix for which genetic data were available. Maxent models of habitat suitability showed that the hybrid, T. ramosissima x T. chinensis , was slightly greater than the parent taxa (AUCs > 0.83). General linear models of Africanized honey bees, a hybrid cross of Tanzanian Apis mellifera scutellata and a variety of European honey bee including A. m. ligustica , showed that the Africanized bees (AUC = 0.81) may be displacing European honey bees (AUC > 0.76) over large areas of the southwestern U.S. More important, Maxent modeling of sub-populations (A1 and A26 mitotypes based on mDNA) could be accurately modeled (AUC > 0.9), and they responded differently to environmental drivers. This suggests that rapid evolutionary change may be underway in the Africanized bees, allowing the bees to spread into new areas and extending their total range. Protecting native species and ecosystems may benefit from risk maps of harmful invasive species, hybrids, and genotypes.

Environment and Ecology Research↗
USGS2023

Living on the edge: Predicting songbird response to management and environmental changes across an ecotone

Effective wildlife management requires robust information regarding population status, habitat requirements, and likely responses to changing resource conditions. Single-species management may inadequately conserve communities and result in undesired effects to non-target species. Thus, management can benefit from understanding habitat relationships for multiple species. Pinyon pine and juniper ( Pinus spp. and Juniperus spp.) are expanding into sagebrush-dominated ( Artemisia spp.) ecosystems within North America and mechanical removal of these trees is frequently conducted to restore sagebrush ecosystems and recover Greater Sage-grouse ( Centrocercus urophasianus ). However, pinyon-juniper removal effects on non-target species are poorly understood, and changing pinyon-juniper woodland dynamics, climate, and anthropogenic development may obscure conservation priorities. To better predict responses to changing resource conditions, evaluate non-target effects of pinyon-juniper removal, prioritize species for conservation, and inform species recovery within pinyon-juniper and sagebrush ecosystems, we modeled population trends and density-habitat relationships for four sagebrush-associated, four pinyon-juniper-associated, and three generalist songbird species with respect to these ecosystems. We fit hierarchical population models to point count data collected throughout the western United States from 2008 to 2020. We found regional population changes for 10 of 11 species investigated; 6 of which increased in the highest elevation region of our study. Our models indicate pinyon-juniper removal will benefit Brewer's Sparrow ( Spizella breweri ), Green-tailed Towhee ( Pipilo chlorurus ), and Sage Thrasher ( Oreoscoptes montanus ) densities. Conversely, we predict largest negative effects of pinyon-juniper removal for species occupying early successional pinyon-juniper woodlands: Bewick's Wren ( Thryomanes bewickii ), Black-throated Gray Warblers ( Setophaga nigrescens ), Gray Flycatcher ( Empidonax wrightii ), and Juniper Titmouse ( Baeolophus ridgwayi ). Our results highlight the importance of considering effects to non-target species before implementing large-scale habitat manipulations. Our modeling framework can help prioritize species and regions for conservation action, infer effects of management interventions and a changing environment on wildlife, and help land managers balance habitat requirements across ecosystems.

Ecology and Evolution↗
USGS2020

Low O2 level enhances CH4-derived carbon flow into microbial communities in landfill cover soils

CH 4 oxidation in landfill cover soils plays a significant role in mitigating CH 4 release to the atmosphere. Oxygen availability and the presence of co-contaminants are potentially important factors affecting CH 4 oxidation rate and the fate of CH 4 -derived carbon. In this study, microbial populations that oxidize CH 4 and the subsequent conversion of CH 4 -derived carbon into CO 2 , soil organic C and biomass C were investigated in landfill cover soils at two O 2 tensions, i.e., O 2 concentrations of 21% (“sufficient”) and 2.5% (“limited”) with and without toluene. CH 4 -derived carbon was primarily converted into CO 2 and soil organic C in the landfill cover soils, accounting for more than 80% of CH 4 oxidized. Under the O 2 -sufficient condition, 52.9%–59.6% of CH 4 -derived carbon was converted into CO 2 (CE CO2-C ), and 29.1%–39.3% was converted into soil organic C (CE organic-C ). A higher CE organic-C and lower CE CO2-C occurred in the O 2 -limited environment, relative to the O 2 -sufficient condition. With the addition of toluene, the carbon conversion efficiency of CH 4 into biomass C and organic C increased slightly, especially in the O 2 -limited environment. A more complex microbial network was involved in CH 4 assimilation in the O 2 -limited environment than under the O 2 -sufficient condition. DNA-based stable isotope probing of the community with 13 CH 4 revealed that Methylocaldum and Methylosarcina had a higher relative growth rate than other type I methanotrophs in the landfill cover soils, especially at the low O 2 concentration, while Methylosinus was more abundant in the treatment with both the high O 2 concentration and toluene. These results indicated that O 2 -limited environments could prompt more CH 4 -derived carbon to be deposited into soils in the form of biomass C and organic C, thereby enhancing the contribution of CH 4 -derived carbon to soil community biomass and functionality of landfill cover soils (i.e. reduction of CO 2 emission).

Environmental Pollution↗
USGS2010

Intercontinental reassortment and genomic variation of low pathogenic avian influenza viruses isolated from northern pintails ( Anas acuta ) in Alaska: examining the evidence through space and time

Migration and population genetic data for northern pintails ( Anas acuta ) and phylogenetic analysis of low pathogenic avian influenza (LPAI) viruses from this host in Alaska suggest that northern pintails are involved in ongoing intercontinental transmission of avian influenza. Here, we further refine this conclusion through phylogenetic analyses which demonstrate that detection of foreign lineage gene segments is spatially dependent and consistent through time. Our results show detection of foreign lineage gene segments to be most likely at sample locations on the Alaska Peninsula and least likely along the Southern Alaska Coast. Asian lineages detected at four gene segments persisted across years, suggesting maintenance in avian hosts that migrate to Alaska each year from Asia or in hosts that remain in Alaska throughout the year. Alternatively, live viruses may persist in the environment and re-infect birds in subsequent seasons.

Alaska↗