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Predicting hydrologic disturbance of streams using species occurrence data

Aquatic organisms have adapted over evolutionary time-scales to hydrologic variability represented by the natural flow regime of rivers and streams in their unimpaired state. Rapid landscape change coupled with growing human demand for water have altered natural flow regimes of many rivers and streams on a global scale. Climate non-stationarity is expected to further intensify hydrologic variability, placing increased pressure on aquatic communities. Using a machine learning approach and georeferenced species occurrence data, we modeled and mapped spatial patterns of hydrologic disturbance for streams in Arkansas, Missouri, and eastern Oklahoma. Random forest (RF) models trained on fish community data, hydrologic, and landscape metrics for gaged streams in the National Hydrography (NHDPlusV2) database were used to predict a hydrologic disturbance index (HDI) for ungaged streams. The HDI is part of the USGS Geospatial Attributes of Gages for Evaluating Streamflow (GAGESII) database and is a composite index of watershed-scale disturbance from anthropogenic stressors. Fish presence/absence data had similar overall model prediction accuracy (77%; 95% CI: 0.74, 0.80) as flow variables (76%; CI: 0.73, 0.80). Including topographic variables increased the RF prediction accuracy of both the fish (90%; CI: 0.88, 0.92) and flow models (86%; CI: 0.84, 0.89). Spatial patterns of hydrologic disturbance suggest distinct ecohydrological regions exist where conservation actions may be focused. Streams with low HDI were predominately located in the Ozark Highlands, Boston Mountains, and Ouachita Mountains. Correlation analysis of HDI by flow regime showed groundwater stable streams had the lowest disturbance frequency, with over 50% of stream reaches with low HDI located in forested land cover. HDI was highest for big rivers, intermittent runoff streams and streams in areas of agricultural land use. Our results show long-term georeferenced biological data can provide a valuable resource for predictive modeling of hydrologic disturbance for ungaged rivers and streams.

Arkansas, Missouri, Oklahoma↗

Logical data model for hydrographic data based on HY_Features concepts

This report describes background and design of the “hydrofabric data model” which defines logic for implementation of data schemas and software that deals with hydrologic geospatial data. As a “logical” data model, the hydrofabric data model specifies details necessary to support compatibility of data and software that satisfy diverse needs without unnecessarily restricting implementation details. The logic presented in this report is based on concepts defined in WaterML2 Part 3 Surface Hydrology Features Concepts and is designed to serve the needs of a range of hydroscience use cases. Development of international community standards applicable to hydrofabrics began, prompted by the World Meteorological Organization Commission for Hydrology, in 2012 [5] . More than 10 years later, this report documents one aspect of a long-term research and development activity that traces its roots back that far. This report describes terminology, use cases, and background as context preceding presentation of the logical model and discussion of its design. Three appendices document related data models, an example encoding of the hydrofabric data model, and an artificial schematic and tabular data example. The sections of the report can be accessed in the Clause 5 section.

OCG Public Engineering Report↗

Selected hydrologic and water-quality data for Kamas Valley and vicinity, Summit County, Utah, 1997-2000

This report contains hydrologic and water-quality data collected in the Kamas Valley vicinity during a study from 1997 to 2000. The study area is in Summit County in north-central Utah and is part of the Middle Rocky Mountains Physiographic Province described by Fenneman (1931). Data were collected in Kamas Valley between the Uinta Mountains on the east and the West Hills on the west, the upper Weber River area, the Samak area along Beaver Creek, the Woodland area, and the Indian Hollow area. These areas, where population growth and water demand are concentrated, encompass about 70 square miles and include the Weber River, Beaver Creek, and Provo River drainages. Surface water is the dominant hydrologic resource. The combined average flow from these three drainages is about 345,000 acre-feet per year. Ground water is present in the unconsolidated deposits in Kamas Valley, in stream alluvium along Beaver Creek and the upper Weber River, and in the consolidated rocks surrounding Kamas Valley.

Utah↗

Hydrologic, water-quality, and meteorologic data from selected sites in the Upper Catawba River Basin, North Carolina, January 1993 through March 1994

Hydrologic, water-quality, and meteorologic data were collected from January 1993 through March 1994 as part of a water-quality investigation of the Upper Catawba River Basin, North Carolina. Specific objectives of the investigation were to characterize the water quality of Rhodhiss Lake, Lake Hickory, and three tributary streams, and to calibrate hydrodynamic water-quality models for the two reservoirs. Sampling locations included 11 sites in Rhodhiss Lake, 14 sites in Lake Hickory, and 3 tributary sites. Tributary sites were located at Lower Creek upstream from Rhodhiss Lake and at Upper Little River and Middle Little River upstream from Lake Hickory. During 21 sampling visits, specific conductance, pH, water temperature, dissolved-oxygen concentration, and water transparency were measured at all sampling locations. Water samples were collected for analysis of biochemical oxygen demand, fecal coliform bacteria, hardness, alkalinity, total and volatile suspended solids, suspended sediment, nutrients, total organic carbon, chlorophyll, iron, calcium, and magnesium from three sites in each reservoir and from the three tributary sites. Chemical and particle-size analyses of bottom material from Rhodhiss Lake and Lake Hickory were performed once during the study. At selected locations, automated instruments recorded water level, streamflow, water temperature, solar radiation, and air temperature at 15-minute intervals throughout the study. Hydrologic data presented in the report include monthly water-level statistics and daily mean values of discharge. Diagrams, tables, and statistical summaries of water-quality data are provided. Meteorologic data in the report include monthly precipitation, and daily mean values of solar radiation and air temperature.

North Carolina↗

Hydrologic record extension of water-level data in the Everglades Depth Estimation Network (EDEN), 1991-99

The real-time Everglades Depth Estimation Network (EDEN) has been established to support a variety of scientific and water management purposes. The expansiveness of the Everglades, limited number of gaging stations, and extreme sensitivity of the ecosystem to small changes in water depth have created a need for accurate water-level and water-depth maps. The EDEN water-surface elevation model uses data from approximately 240 gages in the Everglades to create daily continuous interpolations of the water-surface elevation and water depth for the freshwater portion of the Everglades from 2000 to the present (2014). These maps provide hydrologic data previously unavailable for assessing biological and ecological studies. Ecologists working in the Everglades expressed a need to the EDEN project team for daily EDEN water-level surfaces from 1990 to 1999. The additional 10 years of surfaces will provide ecologists and resource managers with two decades (1991–2011) of surfaces to analyze hydrologic dynamics. Before 2000, many of the EDEN gages used to generate water surfaces were not in operation. These datasets were extended to provide estimations of hydrologic time-series histories. The general approach to the record extension (hindcasts) was to (1) create a database of available data from 1990 to the present; (2) use dynamic cluster analysis to group stations with similar hydrologic behaviors for subareas of the Everglades with a large number of stations; (3) use results from the cluster analysis to select candidate explanatory variables; (4) develop linear regression or artificial neural network models to extend water-level records; and (5) evaluate record extensions by using model performance statistics and comparison of water-surface maps for similar hydrologic conditions for the hindcasted period (1991–99) and measured period (2000–11). To hindcast and fill data records, 214 empirical models were developed—189 are linear regression models and 25 are artificial neural network models. The coefficient of determination (R 2 ) for 163 of the models is greater than 0.80 and the median percent model error (root mean square error divided by the range of the measured data) is 5 percent. To evaluate the performance of the hindcast models as a group, contour maps of modeled water-level surfaces at 2-centimeter (cm) intervals were generated using the hindcasted data. The 2-cm contour maps were examined for selected days to verify that water surfaces from the EDEN model are consistent with the input data. The biweekly 2-cm contour maps did show a higher number of issues during days in 1990 as compared to days after 1990. May 1990 had the lowest water levels in the Everglades of the 21-year dataset used for the hindcasting study. To hindcast these record low conditions in 1990, many of the hindcast models would require large extrapolations beyond the range of the predictive quality of the models. For these reasons, it was decided to limit the hindcasted data to the period January 1, 1991, to December 31, 1999. Overall, the hindcasted and gap-filled data are assumed to provide reasonable estimates of station-specific water-level data for an extended historical period to inform research and natural resource management in the Everglades.

Florida↗

A summary of selected publications, project activities, and data sources related to hydrology in the Warrior and Plateau coal fields of Alabama

The report is a reference source on hydrologic information related to coal-mining activities in the Warrior and Plateau coal fields of Alabama. It contains a bibliography of more than 200 references and selected annotations. Also included is information on maps, automated-data bases, water-monitoring programs, and data-source agencies and organizations.

Open-File Report↗

Hydrologic and water-quality data, Honey Creek State Natural Area, Comal County, Texas, August 2001-September 2003

The U.S. Geological Survey collected rainfall, streamflow, evapotranspiration, and rainfall and stormflow water-quality data from seven sites in two adjacent watersheds in the Honey Creek State Natural Area, Comal County, Texas, during August 2001–September 2003, in cooperation with the U.S. Department of Agriculture, Natural Resources Conservation Service, and the San Antonio Water System. Data collected during this period represent baseline hydrologic and water-quality conditions before proposed removal of ashe juniper ( Juniperus ashei ) from one of the two watersheds. Juniper removal is intended as a best-management practice to increase water quantity (aquifer recharge and streamflow) and to protect water quality. Continuous (5-minute interval) rainfall data are collected at four sites; continuous (5-minute interval) streamflow data are collected at three sites. Fifteen-minute averages of meteorological and solar-energy-related data recorded at two sites are used to compute moving 30-minute evapotranspiration values on the basis of the energy-balance Bowen ratio method. Periodic rainfall water-quality data are collected at one site and stormflow water-quality data at three sites. Daily rainfall, streamflow, and evapotranspiration totals are presented in tables; detailed data are listed in an appendix. Results of analyses of the periodic rainfall and stormflow water-quality samples collected during runoff events are summarized in the appendix; not all data types were collected at all sites nor were all data types collected during the entire 26-month period.

Texas↗

Rapid-response unsaturated zone hydrology: Small-scale data, small-scale theory, big problems

The unsaturated zone (UZ) extends across the Earth’s terrestrial surface and is central to many problems related to land and water resource management. Flow of water through the UZ is typically thought to be slow and diffusive, such that it could attenuate fluxes and dampen variability between atmospheric inputs and underlying aquifer systems. This would reduce water resource vulnerability to contaminants and water-related hazards. Reducing or negating that effect, however, spatially concentrated and rapid flow and transport through the unsaturated zone is surprisingly common and becoming more so with the increasing frequency and magnitude of extreme hydroclimatic events. Arising from the wide range in the rates and complex modes of nonlinear flow processes, these effects are among the most poorly characterized hydrologic phenomena. Issues of scale present additional difficulties. Equations representing unsaturated processes have been developed and tested on the basis of field and laboratory measurements typically made at scales from pore size to plot size. In contrast, related problems of significant interest to society, including floods, aquifer recharge, landslides, and groundwater contamination, range from watershed to regional scales. The disparity between the scale of our understanding and the scale of interest for societal problems has spurred application of these model equations at increasingly coarse resolutions over larger areas than can be justified by existing measurements or theory. This mismatch in scales requires an assumption that spatially averaging slow diffusive flow and rapid preferential flow can effectively represent the influence of both processes across vast areas. Given the currently inadequate recognition and quantitative characterization of focused and rapid processes in unsaturated flow, these phenomena are critically in need of expanded attention and effort.

Frontiers in Earth Science↗

Summary statistics and graphical comparisons of historical hydrologic and water-quality data, Seco Creek Watershed, South-Central Texas

The U.S. Geological Survey collected hydrologic (rainfall, streamflow, and reservoir content) and water-quality data in the Seco Creek watershed, south-central Texas. Most of the data from 15 sites were collected as part of a study in cooperation with the U.S. Department of Agriculture and the Texas State Soil and Water Conservation Board to evaluate the effects of agricultural best-management practices on surface- and ground-water quantity and quality in the 255-square-mile watershed. Nearly 400 best-management practices at 58 sites were implemented by landowners in the watershed during March 1990-September 1995. Most of the data are from the early 1990s, the period during and after implementation of best-management practices. Data from five sites include water quality and are summarized in tables and graphics in the text; and data from all 15 sites are summarized on a diskette. Maximum annual rainfall among the sites for which data are presented in the text (excluding one site) for the during-and-after-implementation period (March 1990-September 1995) was 53.27 inches in water year 1992. Maximum annual total streamflow among the sites for the period was 63,400 acre-feet, also in water year 1992. At the one site with water-quality data (under base-flow conditions) for both the before-implementation period and the during-and-after implementation period of best-management practices, percentiles (5, 25, 50, 75, 95) for specific conductance, nitrate concentration, and fecal coliform density were less for the during-and-after-implementation period than for the before-implementation period.

Texas↗

Geologic, hydrologic, and water-quality data from selected boreholes and wells in and near Belvidere, Illinois, 1989-96

This report presents selected geologic, hydrologic, and water-quality data collected in and near Belvidere, Ill., during 1989-96. The data were collected primarily by the U.S. Geological Survey and U.S. Environmental Protection Agency in support of an ongoing ground-water study of the glacial drift aquifer and bedrock aquifers of Ordovician and Cambrian age underlying the area. These data were collected from 8 boreholes and 52 wells within a 4 square-mile urbanized part of the 80 square-mile study area. Data include stratigraphic, lithologic, and physical descriptions of rock cores from 5 boreholes; geophysical logs of 23 boreholes; surface-geophysical surveys at 3 sites; ground-water levels at 46 wells; horizontal hydraulic conductivity estimated from slug tests at 32 boreholes and wells; and ground-water-quality information at 26 boreholes and wells. Ground-water-quality information include field characteristics and laboratory analyses of inorganic constituents, tritium, volatile organic compounds, and semivolatile organic compounds. Also included are construction logs for 11 monitoring wells and descriptions of the methods used for data collection.

Illinois↗

Development and testing of a contamination potential mapping system for a portion of the General Separations Area, Savannah River Site, South Carolina

A methodology was developed to evaluate and map the contamination potential or aquifer sensitivity of the upper groundwater flow system of a portion of the General Separations Area (GSA) at the Department of Energy's Savannah River Site (SRS) in South Carolina. A Geographic Information System (GIS) was used to integrate diverse subsurface geologic data, soils data, and hydrology utilizing a stack-unit mapping approach to construct mapping layers. This is the first time that such an approach has been used to delineate the hydrogeology of a coastal plain environment. Unit surface elevation maps were constructed for the tops of six Tertiary units derived from over 200 boring logs. Thickness or isopach maps were created for five hydrogeologic units by differencing top and basal surface elevations. The geologic stack-unit map was created by stacking the five isopach maps and adding codes for each stack-unit polygon. Stacked-units were rated according to their hydrogeologic properties and ranked using a logarithmic approach (utility theory) to establish a contamination potential index. Colors were assigned to help display relative importance of stacked-units in preventing or promoting transport of contaminants. The sensitivity assessment included the effects of surface soils on contaminants which are particularly important for evaluating potential effects from surface spills. Hydrogeologic/hydrologic factors did not exhibit sufficient spatial variation to warrant incorporation into contamination potential assessment. Development of this contamination potential mapping system provides a useful tool for site planners, environmental scientists, and regulatory agencies.A methodology was developed to evaluate and map the contamination potential or aquifer sensitivity of the upper groundwater flow system of a portion of the General Separations Area (GSA) at the Department of Energy's Savannah River Site (SRS) in South Carolina. A Geographic Information System (GIS) was used to integrate diverse subsurface geologic data, soils data, and hydrology utilizing a stack-unit mapping approach to construct mapping layers. This is the first time that such an approach has been used to delineate the hydrogeology of a coastal plain environment. Unit surface elevation maps were constructed for the tops of six Tertiary units derived from over 200 boring logs. Thickness or isopach maps were created for five hydrogeologic units by differencing top and basal surface elevations. The geologic stack-unit map was created by stacking the five isopach maps and adding codes for each stack-unit polygon. Stacked-units were rated according to their hydrogeologic properties and ranked using a logarithmic approach (utility theory) to establish a contamination potential index. Colors were assigned to help display relative importance of stacked-units in preventing or promoting transport of contaminants. The sensitivity assessment included the effects of surface soils on contaminants which are particularly important for evaluating potential effects from surface spills. Hydrogeologic/hydrologic factors did not exhibit sufficient spatial variation to warrant incorporation into contamination potential assessment. Development of this contamination potential mapping system provides a useful tool for site planners, environmental scientists, and regulatory agencies.

South Carolina↗

Utilizing geochemical, hydrologic, and boron isotopic data to assess the success of a salinity and selenium remediation project, Upper Colorado River Basin, Utah

Stream discharge and geochemical data were collected at two sites along lower Ashley Creek, Utah, from 1999 to 2003, to assess the success of a site specific salinity and Se remediation project. The remediation project involved the replacement of a leaking sewage lagoon system that was interacting with Mancos Shale and increasing the dissolved salinity and Se load in Ashley Creek. Regression modeling successfully simulated the mean daily dissolved salinity and Se loads (R2 values ranging from 0.82 to 0.97) at both the upstream (AC1) and downstream (AC2/AC2A) sites during the study period. Prior to lagoon closure, net gain in dissolved-salinity load exceeded 2177??metric tons/month and decreased after remediation to less than 590??metric tons/month. The net gain in dissolved Se load during the same pre-closure period exceeded 120??kg/month and decreased to less than 18??kg/month. Sen's slope estimator verified the statistical significance of the modeled reduction in monthly salinity and Se loads. Measured gain in dissolved constituent loads during seepage tests conducted during September and November 2003 ranged from 0.334 to 0.362??kg/day for dissolved Se and 16.9 to 26.1??metric tons/day for dissolved salinity. Stream discharge and changes in the isotopic values of delta boron-11 (??11B) were used in a mixing model to differentiate between constituent loadings contributed by residual sewage effluent and naturally occurring ground-water seepage entering Ashley Creek. The majority of the modeled ??11B values of ground-water seepage were positive, indicative of minimal seepage contributions from sewage effluent. The stream reach between sites S3 and AC2A contained a modeled ground-water seepage ??11B value of - 2.4???, indicative of ground-water seepage composed of remnant water still draining from the abandoned sewage lagoons.

Science of the Total Environment↗

U.S. Geological Survey and Blackfeet Water Department Hydrologic Assessment of the Blackfeet Indian Reservation, Montana

The Blackfeet Nation seeks an increased scientific understanding of the water resources within the Blackfeet Indian Reservation of northwestern Montana. Hydrologic information is needed to better inform water-management decisions as the Blackfeet Nation implements the Blackfeet Water Rights Compact, initiates new water-use projects, and improves the Blackfeet Irrigation Project. The U.S. Geological Survey and the Blackfeet Water Department began cooperating in 2019 to design and implement a hydrologic data-collection program. The program is being implemented in phases that include discrete and continuous discharge measurements of streams and canals, installation, operation of streamgages, groundwater-level monitoring, and database management. Data collected will be used to characterize current hydrologic conditions on the reservation and will act as a baseline for comparison as Blackfeet Nation water projects are implemented.

Montana↗

Denitrification rates in marsh soils and hydrologic and water quality data for Northeast Creek and Bass Harbor Marsh watersheds, Mount Desert Island, Maine

Nutrient enrichment from atmospheric deposition, agricultural activities, wildlife, and domestic sources is a concern at Acadia National Park because of the potential problem of water-quality degradation and eutrophication in estuaries. Water-quality degradation has been observed at the park's Bass Harbor Marsh estuary but minimal degradation is observed in Northeast Creek estuary. Previous studies at Acadia National Park have estimated nutrient inputs to estuaries from atmospheric deposition and surface-water runoff, and have identified shallow groundwater as an additional potential nutrient source. Previous studies at Acadia National Park have assumed that a certain fraction of the nitrogen input was removed through microbial denitrification, but rates of denitrification (natural or maximum potential) in marsh soils have not been determined. The U.S. Geological Survey, in cooperation with Acadia National Park, measured in situ denitrification rates in marsh soils in Northeast Creek and Bass Harbor Marsh watersheds during the summer seasons of 2008 and 2009. Denitrification was measured under ambient conditions and following inorganic nitrogen and glucose additions. Laboratory incubations of marsh soils with and without acetylene were conducted to determine average ratios of nitrous oxide (N 2 O) to nitrogen (N 2 ) produced during denitrification. Surface water and groundwater samples were analyzed for nutrients, specific conductance, temperature, and dissolved oxygen. Water level was recorded continuously during the growing season in Fresh Meadow Marsh in the Northeast Creek Watershed.

Maine↗

Hydrologic interpretation of geophysical data from the southeastern Hueco Bolson, El Paso, and Hudspeth Counties, Texas

Airborne-electromagnetic and earth-resistivity surveys were used to explore for fresh ground water in the Hueco Bolson southeast of El Paso, Texas. Aerial surveys were made along about 500 miles (800 km) of flight line, and 67 resistivity soundings were made along 110 miles (180 km) of profile. The surveys did not indicate the presence of any large bodies of fresh ground water, but several areas may be underlain by small to moderate amounts of fresh to slightly saline water. The material underlying the flood plain of the Rio Grande is predominantly clay or sand of low resistivity. Along a band on the mesa next to and parallel to the flood plain, more resistive material composed partly of deposits of an ancient river channel extends to depths of about 400 to 1,700 feet (120 to 520 m). Locally, the lower part of this more resistive material is saturated with fresh to slightly saline water. The largest body of fresh to slightly saline ground water detected in this study is between Fabens and Tornillo, Texas, mostly in the sandhill area between the flood plain and the mesa. Under assumed conditions, the total amount of water in storage may be as much as 400,000 to 800,000 acre-feet (500 million to 1 billion m ). The resistivity data indicate that the deep artesian zone southwest of Fabens extends from a depth of about 1,200 feet (365 m) to about 2,800 feet (855 m).

Open-File Report↗