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At least 1,225 records · Page 68Linked to original sources
USGS2012

Seasonal patterns in nutrients, carbon, and algal responses in wadeable streams within three geographically distinct areas of the United States, 2007-08

The U.S. Geological Survey determined seasonal variability in nutrients, carbon, and algal biomass in 22 wadeable streams over a 1-year period during 2007 or 2008 within three geographically distinct areas in the United States. The three areas are the Upper Mississippi River Basin (UMIS) in Minnesota, the Ozark Plateaus (ORZK) in southern Missouri and northern Arkansas, and the Upper Snake River Basin (USNK) in southern Idaho. Seasonal patterns in some constituent concentrations and algal responses were distinct. Nitrate concentrations were greatest during the winter in all study areas potentially because of a reduction in denitrification rates and algal uptake during the winter, along with reduced surface runoff. Decreases in nitrate concentrations during the spring and summer at most stream sites coincided with increased streamflow during the snowmelt runoff or spring storms indicating dilution. The continued decrease in nitrate concentrations during summer potentially is because of a reduction in nitrate inputs (from decreased surface runoff) or increases in biological uptake. In contrast to nitrate concentrations, ammonia concentrations varied among study areas. Ammonia concentration trends were similar at UMIS and USNK sampling sites with winter peak concentrations and rapid decreases in ammonia concentrations by spring or early summer. In contrast, ammonia concentrations at OZRK sampling sites were more variable with peak concentrations later in the year. Ammonia may accumulate in stream water in the winter under ice and snow cover at the UMIS and USNK sites because of limited algal metabolism and increased mineralization of decaying organic matter under reducing conditions within stream bottom sediments. Phosphorus concentration patterns and the type of phosphorus present changes with changing hydrologic conditions and seasons and varied among study areas. Orthophosphate concentrations tended to be greater in the summer at UMIS sites, whereas total phosphorus concentrations at most UMIS and USNK sites peaked in the spring during runoff and then decreased through the remainder of the sampling period. Total phosphorus and orthophosphate concentrations in OZRK streams peaked during summer indicating a runoff-based source of both nutrients. Orthophosphate concentrations may increase in streams in the late summer when surface runoff composes less of total streamflow, and when groundwater containing orthophosphate becomes a more dominant source in streams during lower flows. Seston chlorophyll a concentrations were greatest early in the growing season (spring), whereas the spring runoff events coincided with reductions in benthic algal chlorophyll a biomass likely because of scour of benthic algae from the channel bottom that are entrained in the water column during that period. Nitrate, ammonia, and orthophosphate concentrations also decreased during that same period, indicating dilution in the spring during runoff events. The data from this study indicate that the source of water (surface runoff or groundwater) to a stream and the intensity of major runoff events are important factors controlling instream concentrations. Biological processes appear to affect nutrient concentrations during more stable lower flow periods in later summer, fall, and winter when residence time of water in a channel is longer, which allows more time for biological uptake and transformations. Management of nutrient conditions in streams is challenging and requires an understanding of multiple factors that affect in-stream nutrient concentrations and biological uptake and growth.

Scientific Investigations Report↗
USGS2013

Aquatic assessment of the Pike Hill Copper Mine Superfund site, Corinth, Vermont

The Pike Hill Copper Mine Superfund site in Corinth, Orange County, Vermont, includes the Eureka, Union, and Smith mines along with areas of downstream aquatic ecosystem impairment. The site was placed on the U.S. Environmental Protection Agency (USEPA) National Priorities List in 2004. The mines, which operated from about 1847 to 1919, contain underground workings, foundations from historical structures, several waste-rock piles, and some flotation tailings. The mine site is drained to the northeast by Pike Hill Brook, which includes several wetland areas, and to the southeast by an unnamed tributary that flows to the south and enters Cookville Brook. Both brooks eventually drain into the Waits River, which flows into the Connecticut River. The aquatic ecosystem at the site was assessed using a variety of approaches that investigated surface-water quality, sediment quality, and various ecological indicators of stream-ecosystem health. The degradation of surface-water quality is caused by elevated concentrations of copper, and to a lesser extent cadmium, with localized effects caused by aluminum, iron, and zinc. Copper concentrations in surface waters reached or exceeded the USEPA national recommended chronic water-quality criteria for the protection of aquatic life in all of the Pike Hill Brook sampling locations except for the location farthest downstream, in half of the locations sampled in the tributary to Cookville Brook, and in about half of the locations in one wetland area located in Pike Hill Brook. Most of these same locations also contained concentrations of cadmium that exceeded the chronic water-quality criteria. In contrast, surface waters at background sampling locations were below these criteria for copper and cadmium. Comparison of hardness-based and Biotic Ligand Model (BLM)-based criteria for copper yields similar results with respect to the extent or number of stations impaired for surface waters in the affected area. However, the BLM-based criteria are commonly lower values than the hardness-based criteria and thus suggest a greater degree or magnitude of impairment at the sampling locations. The riffle-habitat benthic invertebrate richness and abundance data correlate strongly with the extent of impact based on water quality for both brooks. Similarly, the fish community assessments document degraded conditions throughout most of Pike Hill Brook, whereas the data for the tributary to Cookville Brook suggest less degradation to this brook. The sediment environment shows similar extents of impairment to the surface-water environment, with most sampling locations in Pike Hill Brook, including the wetland areas, and the tributary to Cookville Brook affected. Sediment impairment is caused by elevated copper concentrations, although localized degradation due to elevated cadmium and zinc concentrations was documented on the basis of exceedances of probable effects concentrations (PECs). In contrast to impairment determined by exceedances of PECs, equilibrium-partitioning sediment benchmarks (based on simultaneously extracted metals, acid volatile sulfides, and total organic carbon) predict no toxic effects in sediments at the background locations and uncertain toxic effects throughout Pike Hill Brook and the tributary to Cookville Brook, with the exception of the most downstream Cookville Brook location, which indicated no toxic effects. Acute laboratory toxicity testing using the amphipod Hyalella azteca and the midge Chironomus dilutus on pore waters extracted from sediment in situ indicate impairment (based on tests with H. azteca ) at only one location in Pike Hill Brook and no impairment in the tributary to Cookville Brook. Chronic laboratory sediment toxicity testing using H. azteca and C. dilutus indicated toxicity in Pike Hill Brook at several locations in the lower reach and two locations in the tributary to Cookville Brook. Toxicity was not indicated for either species in sediment from the most acidic metal-rich location, likely due to the low lability of copper in that sediment, as indicated by a low proportion of extractable copper (simultaneously extracted metal (SEM) copper only 5 percent of total copper) and due to the flushing of acidic metal-rich pore water from experimental chambers as overlying test water was introduced before and replaced periodically during the toxicity tests. Depositional habitat invertebrate richness and abundance data generally agreed with the results of toxicity tests and with the extent of impact in the watersheds on the basis of sediment and pore waters. The information was used to develop an overall assessment of the impact of mine drainage on the aquatic system downstream from the Pike Hill copper mines. Most of Pike Hill Brook, including several wetland areas that are all downstream from the Eureka and Union mines, was found to be impaired on the basis of water-quality data and biological assessments of fish or benthic invertebrate communities. In contrast, only one location in the tributary to Cookville Brook, downstream from the Smith mine, is definitively impaired. The biological community begins to recover at the most downstream locations in both brooks due to natural attenuation from mixing with unimpaired streams. On the basis of water quality and biological assessment, the reference locations were of good quality. The sediment toxicity, chemistry, and aquatic community survey data suggest that the sediments could be a source of toxicity in Pike Hill Brook and the tributary to Cookville Brook. On the basis of water quality, sediment quality, and biologic communities, the impacts of mine drainage on the aquatic ecosystem health of the watersheds in the study area are generally consistent with the toxicity suggested from laboratory toxicity testing on pore water and sediments.

Vermont↗
USGS2015

Nutrient attenuation in rivers and streams, Puget Sound Basin, Washington

Nutrients such as nitrogen and phosphorus are important for aquatic ecosystem health. Excessive amounts of nutrients, however, can make aquatic ecosystems harmful for biota because enhanced growth and decay cycles of aquatic algae can reduce dissolved oxygen in the water. In Puget Sound marine waters, low dissolved oxygen concentrations are observed in a number of marine nearshore areas, and nutrients have been identified as a major stressor to the local ecosystem. Delivery of nutrients from major rivers in the Puget Sound Basin to the marine environment can be large. Therefore, it is important to identify factors related to how nutrients are retained (attenuated) within streams and rivers in the Puget Sound Basin. Physical, chemical, and biological factors related to nutrient attenuation were identified through a review of related scientific literature. Numerous empirical modeling approaches for estimating nutrient attenuation in streams and rivers also were compiled, and a subset of these models was applied to the Puget Sound Basin. In particular, models based on the physical characteristics of a river reach (RivR-N model) and on the physical and biological features of a river reach (v f model) were used and compared for the 17 major rivers draining to the Puget Sound. Data on the relative amount of instream attenuation (the fraction of nutrient input removed per kilometer of stream reach) showed some common and general themes. Firstly, headwater reaches throughout the Puget Sound Basin tend to be better than the main stems of the major rivers at attenuating nitrate and orthophosphorus (ortho-P). Secondly, rivers are more efficient at attenuating nitrate than ortho-P, probably because of the close relation between phosphorus and suspended sediment, which was not captured fully in the models. Thirdly, when comparing the RivR-N and v f models for nitrate, physical characteristics of the channel may be more effective predictors of relative nitrate attenuation for main stem reaches, whereas biological factors may be more effective predictors in headwater reaches. These results are explained in terms of four primary factors of attenuation: sinuosity, channel slope, specific discharge, and uptake velocity (v f ) of the reach. A simple scoring procedure based on these four factors showed that reaches where attenuation scores were high had higher relative attenuation of nutrients from the RivR-N and v f models. This attenuation "scorecard" can be used to quickly assess the potential for a given reach to attenuate nutrients. Seasonal relative attenuation at three case studies was greater in summer months (July through September) and much lower and almost constant from January through June. An analysis of relative attenuation across a range of nutrient concentrations showed that, at some point, relative instream attenuation is minimized. For nitrate, relative attenuation reached a minimum value greater than 3 milligrams of nitrogen per liter (mg N/L) during low flow and 1 mg N/L during high flow. For orthophosphate, minimum relative attenuation was observed at about 0.1 milligram of phosphorus per liter (mg P/L) for both low- and high-flow conditions. Generally, the temporal dynamics of nutrient attenuation are dependent on the travel time through a given reach, the proportion of flow in contact with the sediment, and the amount of biological activity. Improved understanding of nutrient attenuation in Puget Sound Basin will benefit from the compilation of more detailed data for specific discharge, channel slope, and channel sinuosity in Puget Sound streams and rivers. Additionally, field studies examining upstream-downstream changes in nutrient load and field-based measurements of v f are needed. From a management perspective, preservation and improvement of instream nutrient attenuation should focus on increasing the travel time through a reach and contact time of water sediment (reactive) surfaces and lowering nutrient concentrations (and loads) to avoid saturation of instream attenuation and increase attenuation efficiency. These goals can be reached by maintaining and restoring channel-flood plain connectivity, maintaining and restoring healthy riparian zones along streams, managing point and nonpoint nutrient loads to streams and rivers, and restoring channel features that promote attenuation such as the addition of woody debris and maintaining pool-riffle morphologies. Many of these management approaches are already being undertaken during projects aimed to restore quality salmon habitat. Therefore, there is a dual benefit to these projects that also may lead to enhanced potential for nitrogen and phosphorus attenuation.

Washington↗
USGS2016

An international borderland of concern: Conservation of biodiversity in the Lower Rio Grande Valley

The Lower Rio Grande Valley (LRGV) of southern Texas is located on the United States-Mexico borderland and represents a 240-kilometer (150-mile) linear stretch that ends at the Gulf of Mexico. The LRGV represents a unique transition between temperate and tropical conditions and, as such, sustains an exceptionally high diversity of plants and animals—some of them found in few, or no other, places in the United States. Examples include Leopardus pardalis albescens (northern ocelot) and Falco femoralis septentrionalis (northern aplomado falcon)—both endangered in the United States and emblematic of the LRGV. The U.S. Fish and Wildlife Service (USFWS) manages three national wildlife refuges (Santa Ana, Lower Rio Grande Valley, and Laguna Atascosa) that together make up the South Texas Refuge Complex, which actively conserves biodiversity in about 76,006 hectares (187,815.5 acres) of native riparian and upland habitats in the LRGV. These diminished habitats harbor many rare, threatened, and endangered species. This report updates the widely used 1988 USFWS biological report titled “Tamaulipan Brushland of the Lower Rio Grande Valley of South Texas: Description, Human Impacts, and Management Options” by synthesizing nearly 400 peer-reviewed scientific publications that have resulted from biological and sociological research conducted specifically in the four Texas counties of the LRGV in the past nearly 30 years. This report has three goals: (1) synthesize scientific insights gained since 1988 related to the biology and management of the LRGV and its unique biota, focusing on flora and fauna of greatest conservation concern; (2) update ongoing challenges facing Federal and State agencies and organizations that focus on conservation or key natural resources in the LRGV; and (3) redefine conservation opportunities and land-acquisition strategies that are feasible and appropriate today, given the many new and expanding constraints that challenge conservation activities in the LRGV. The LRGV faces every contemporary conservation challenge of the 21st century, but ongoing human population growth and its associated demands, international border issues, and oil, gas, and alternative energy development dominate impacts that affect conservation in the LRGV. Continued careful syntheses of existing and future information collected in the LRGV are needed on many biological and sociological topics to guide conservation activities. Quick response will no doubt be necessary to face contemporary and difficult-to-predict challenges such as climate change, diminished water availability and quality, spread of invasive species, and habitat loss and fragmentation. Complexities of a guarded international borderland add pressure to small patches of native habitat that remain in many places of the LRGV, particularly along the Rio Grande. Large connected corridors of restored native habitat could be the best option to maintain, and even enhance, the exceptional biodiversity of the LRGV in the face of exceptional human demand.

Texas↗
USGS2020

Ecological status of aquatic communities in selected streams in the Milwaukee Metropolitan Sewerage District planning area of Wisconsin, 2004–13

A total of 14 wadable streams in urban or urbanizing watersheds near Milwaukee, Wisconsin, were sampled in 2004, 2007, 2010, and 2013 to assess the ecological status of aquatic communities (biota), including benthic algae and invertebrates, and fish. To assess temporal variation, additional community sampling was also done at a subset of three sites in 2011 and 2012. Relative abundances of each type of organism were used to calculate biological metrics, such as richness and diversity, percentages of intolerant and tolerant organisms, and indexes of biotic integrity for invertebrates and fish. Selected environmental (physical and chemical) data in the streams were collected to evaluate potential relations to the biota and the ecological health of the stream. Physical and chemical data included land use/land cover, stream discharge from U.S. Geological Survey (USGS) streamgages (except at 2 creeks that were not gaged), stream habitat, microhabitat at invertebrate collection locations, water quality (except at 2 creeks that were not gaged), field measurements of several water-quality constituents, measures of benthic algal biomass, and toxicity and chemical tests on extracts from passive samplers deployed at a subset of 6 sites. Relative abundances of organisms and biological metrics were compared among sampling years and with environmental metrics to evaluate the ecological status of these streams and determine primary stressors on the aquatic communities, with the aim of helping resource managers understand and work toward improving the ecological health of these and other urban and urbanizing rivers in the study area. Biological metrics for most sites indicated some level of diminished ecological status when compared across all sampled sites and when compared with rating scales for selected metrics. The least degraded sites among all those sampled—indicated by aggregate bioassessments for algae, invertebrates, and fish metrics and in order starting with the best overall condition—were the Milwaukee River near Cedarburg, Menomonee River at Menomonee Falls, Jewel Creek, and Milwaukee River at Milwaukee. The most degraded sites were Menomonee River at Wauwatosa, Root River at Greenfield, Lincoln Creek, and the Kinnickinnic River. Differences in aggregate bioassessments indicate that aquatic communities at the Menomonee River at Wauwatosa site and the Root River at Greenfield site were worse in 2013 than in 2004; however, Oak Creek and Honey Creek sites were better. In 2013, several sites had less than 30-percent pollution-sensitive diatoms indicating degraded algal assemblages. Invertebrate metrics for most of the 14 sites in 2013 were lower than in 2004 and indicate that invertebrate assemblages at most sampled sites were more degraded in 2013. Tolerant fish taxa made up more than 40 percent of assemblages at most sites and nearly 100 percent of assemblages at four sites. At times, in some smaller streams, too few fish were captured to compute an Index of Biotic Integrity with confidence, and invertebrates provided a better means for assessing the ecological status and water quality. With these few exceptions, the use of all three groups of biota provided the most robust assessments at the 14 sites in 2004–13. Physical and chemical stressors were correlated to adverse effects on aquatic biota at the sampled streams. Passive samplers were deployed at a subset of six sites in 2013. Microtox results indicated there was little or no toxicity at the Milwaukee River near Cedarburg site and at the Oak Creek site, slight toxicity at the Lincoln Creek and Honey Creek sites, and moderate toxicity at the Milwaukee River at Milwaukee site and the Little Menomonee River site; however, based on cytochrome-P450 reporter gene system toxicity tests, potential toxicity from hydrophobic organic contaminants was measured at all six sites. For all 14 sites, physical and chemical stressors related to urbanization correlated with biological metrics for algae, invertebrates, and fish. Most stressors for aquatic biota reflected an urban signature. Stressors related to ecological condition in our study were chemical and physical, such as developed land, impervious surface in the watershed, urban land in a buffer area around the stream (a 100-foot [30-meter]-wide area on each side of the stream, and maximum instantaneous discharge normalized by drainage area (a measure of flood and scour effects). Chemical stressors included low waterborne concentrations of dissolved oxygen and high concentrations of chloride, zinc and other metals, nutrients (nitrite and phosphorus), and fecal coliform bacteria. Although algae, invertebrates, and fish did not always demonstrate a significant response to the same stressors, higher abundances of high total phosphorus-indicator diatoms, lower ratings for invertebrate biotic integrity indexes and percentages of mayflies-stoneflies-caddisflies, and lower values for fish biotic integrity indexes underscored possible adverse effects of even low levels of developed land. Developed land is typically associated with more rapid runoff, which washes chemicals from impervious surfaces into area waterways and degrades stream habitat for aquatic communities. However, with respect to at least chloride from road salt, diatoms tolerant to dissolved salts were significantly lower with as little as 1-percent mixed forest in the watershed. Lower percentages of urban land in the stream buffer correlated with healthier aquatic assemblages of algae, invertebrates, and fish. The assessment of algal, invertebrate, and fish assemblages coupled with physical and chemical data were highly useful in evaluating the ecological status of aquatic communities at the 14 sites and for determining environmental stressors that may be contributing to reduced stream condition. Some of the stressors could potentially be removed or lessened with stream rehabilitation or changes in watershed management.

Wisconsin↗
USGS2002

Water-quality and aquatic-community characteristics of selected reaches of the St. Croix River, Minnesota and Wisconsin, 2000

Synoptic sampling was used to determine chemical and biological characteristics of the St. Croix River within a study reach that extended from near Danbury, Wisconsin to the confluence with the Mississippi River at Prescott, Wisconsin. The study was conducted August 7- September 25, 2000 during summer low flow. Dissolved-residue concentrations were found to increase gradually as the river flows downstream, with an abrupt increase downstream of the confluence with the Sunrise River that was primarily attributed to an increase in calcium and magnesium. Dissolved residue concentrations were further augmented by increased yields of chloride and sulfate in the part of the St. Croix Basin between Nevers Dam near St. Croix Falls, Wisconsin and Marine on St. Croix, Minnesota. Nearly all of the nitrogen in transport was in the form of nitrate and organic nitrogen. Organic nitrogen, mainly in particulate form, accounted for most of the gain in total nitrogen load within the study reach. Nitrogen loading to the mainstem indicated relatively uniform nitrogen inputs from the Clam River, Kettle River, and Snake River watersheds. The rate of nitrogen load accrual increased downstream of the confluence with the Sunrise River and in the subreach extending from Nevers Dam through St. Croix Falls to Franconia, Minnesota. Nitrogen load also increased, primarily because of nitrate input, in the part of Lake St. Croix downstream of the confluence with the Kinnickinnic River. Total phosphorus concentrations and loads reflected variations in the amount of particulate phosphorus in transport. Phosphorus loading increased in the part of the St. Croix River that includes Danbury and the confluences of the Yellow River and Clam River. Phosphorus loading also increased downstream of the confluence with the Sunrise River, but the greatest load increase occurred between Nevers Dam and Franconia. Phosphorus load decreased substantially as the river flowed through the pooled reach of Lake St. Croix downstream of Stillwater. Suspended-sediment concentrations were low, ranging from 4.0 to 36 milligrams per liter. The small amount of sediment in transport was reflected in turbidity measurements that ranged from 0.5 to 3.6 Nephelometry Turbidity Units, and transparency tube measurements that were greater than 60 centimeters at all sites. Biological measures of resource quality change in the St. Croix River along its course from Danbury to Prescott. Changes in the biological indicators of resource quality (fish and invertebrate community composition) are most notable just upstream and downstream of the dam at St. Croix Falls, Wisconsin. Aquatic communities in the upper St. Croix River, from near Danbury to near Rush City, Minnesota, indicate minimal physical and chemical disturbance as evidenced by relatively high taxa richness and greater proportions of taxa intolerant to physical and chemical disturbance. In contrast, aquatic communities downstream of the Sunrise River to Marine on St. Croix indicate both physical and chemical disturbance. Resource monitoring, consisting of short-term diagnostic studies, may be needed in parts of the St. Croix River mainstem and tributaries where results from this study indicate constituent loading is greatest and where the aquatic community composition indicates disturbance. Longer-term trend monitoring may be needed to detect physical, chemical and biological responses to natural processes and human activities in the St. Croix River Basin.

Minnesota, Wisconsin↗
USGS2003

Resurvey of quality of surface water and bottom material of the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, 1999-2000

The quality of water and bottom material in the Barataria Preserve of Jean Lafitte National Historical Park and Preserve, Louisiana, was surveyed from March 1999 to May 2000. Organochlorine, chlorophenoxy acid, and organophosphorus pesticides; polychlorinated biphenyls (PCB's); and trace elements were analyzed in surface water and bottom material from three sites previously sampled in a 1981-82 survey. Surface water at six sites was sampled and analyzed for selected nutrients and major inorganic ions based on their importance to human health, the health of the marshes of the Barataria Preserve, or their usefulness in tracking the circulation of Mississippi River water in the Barataria Preserve. Southern Louisiana was in a moderate to severe drought during most of the sampling period, which elevated salinity in the Barataria Preserve for at least 8 months. Specific conductance values were less than 3,000 µS/cm (microsiemens per centimeter at 25 degrees Celsius) in surface water throughout the Barataria Preserve from March through September 1999. Specific conductance values increased over the next 2 months and then remained between 5,000 and 6,000 µS/cm. The herbicide 2,4-D was detected in water at the two sites sampled in August 1999 but not at any site during the two other sampling times. Iron, manganese, and the trace elements copper, nickel, and zinc were detected in dissolved and whole-water samples at all three sites. Nitrite+ nitrate, as nitrogen, concentrations ranged from less than 0.002 to 0.19 mg/L (milligrams per liter). Ammonia, as nitrogen, concentrations ranged from less than 0.01 to 0.16 mg/L. Orthophosphate, as phosphorus, concentrations ranged from less than 0.002 to 0.14 mg/L. Calcium, magnesium, potassium, sulfate, and chloride concentrations in surface water were elevated due to the marine influence on the composition of surface water in the Barataria Preserve during the sampling period. Sulfate and chloride concentrations reached 379 and 2,830 mg/L, respectively. Polychlorinated biphenyls, chlordane, and DDT were detected in bottom material. Trace elements were detected in bottom material at all three of the sampled sites. Arsenic concentrations ranged from 4 to 9 µg/g (micrograms per gram) and lead concentrations from 20 to 31 µg/g. Mercury concentrations also were above laboratory reporting levels (LRL's) for bottom material at all three sites. The herbicide 2,4-D was detected in surface water during both surveys. Other organic compounds were not detected in surface water. Mercury and chromium were detected in surface water at all three sites during the 1981-82 survey but were below LRL?s during the 1999-2000 survey. Changes in chemical characteristics of bottom material occurred during the years between the 1981-82 and 1999-2000 surveys. DDT decreased in the bottom material at Bayou Segnette near Barataria. DDE, a degradation product, increased at this site, indicating that over time, DDT concentrations are decreasing in bottom material. PCB's were present in similar concentrations (Bayou Segnette near Barataria) or increased (Bayou Segnette 4.6 miles below Westwego) from 1981-82 to 1999-2000. Cadmium concentrations consistently decreased by half or more at all three sites from 1981-82 to 1999-2000. Mercury concentrations were consistently lower at all three sites in the 1999-2000 survey, but the differences from the 1981-82 survey were small. Chromium concentrations increased at two of the three sites from 1981-82 to the present survey. At the third site, no chromium value was available for the earlier survey. Concentrations of copper and nickel increased in bottom material at the two sites on Bayou Segnette, but decreased at Kenta Canal northwest of Westwego. Probable Effects Levels (PEL's) and Interim Sediment Quality Guidelines (ISQG's) concentrations, as tabulated by the Canadian Council of Ministers of the of the Environment, were used to assess the probability of biological impairment in the Barataria Preserve. PEL’s are concentrations of a chemical at or above which some biological impairment is likely. ISQG concentrations are those at or below which biological impairment is unlikely. Concentrations of 2,4-D and trace elements, when detected in surface water, were substantially lower than levels at which biological impairment could be expected. Concentrations of organic compounds in bottom material were at most less than 25 percent of PEL’s, and usually much lower. Arsenic, cadmium, copper, and lead concentrations in bottom material were generally slightly above or lower than ISQG concentrations in both surveys, although arsenic was as high as 53 percent of PEL’s at one site in the 1999-2000 survey. All other trace elements in bottom material were present in concentrations lower than ISQG concentrations.

Louisiana↗
USGS1999

Characteristics of water-quality data for Lake Houston, selected tributary inflows to Lake Houston, and the Trinity River near Lake Houston (a potential source of interbasin transfer), August 1983-September 1990

Lake Houston, a reservoir completed in 1954 about 25 miles east-northeast of Houston, Texas, is a principal surface-water source for the city of Houston. The increase in water supply to meet future demands is expected to be accommodated by supplementing surface-water inflows to Lake Houston. The Trinity River is considered a potential source for interbasin transfer of water to Lake Houston. Before beginning to supplement inflows, the City needs to better understand the potential effects on Lake Houston water quality from streams that flow into or might contribute water to Lake Houston. During 1983–90, the USGS collected 3,727 water-quality samples from 27 sites in Lake Houston, 6 of the 7 main tributaries to the lake, and the Trinity River at Romayor. Longitudinal profiles of water temperature, dissolved oxygen, specific conductance, pH, and nutrients from the dam to the East and West Forks of Lake Houston constructed for a winter day and a summer day indicate that in general the lake water is mixed in the winter and stratified in the summer. The results of Mann-Whitney rank-sum tests to determine whether there were significant differences between summer and non-summer field measurements, 5-day biological oxygen demand, bacteria, physical and aesthetic properties, nutrients, organic carbon, chlorophyll a, and trace elements in the lake nearest the dam, the East Fork of the lake, and the West Fork of the lake at the same relative depth showed significant differences between summer and non-summer samples for at least one of the three locations at the same relative depth for all 15 properties and constituents tested except specific conductance. The test results indicate that in general Lake Houston is well mixed in the non-summer period and stratified with respect to selected properties and constituents in the summer. The results of rank-sum tests to determine whether there were significant differences between field measurements, 5-day biological oxygen demand, physical and aesthetic properties, nutrients, organic carbon, and chlorophyll a in the lake nearest the dam, the East Fork of the lake, and the West Fork of the lake for samples collected during the same season at the same relative depth showed that significant differences were common; generally, the West Fork had the largest median concentrations among the three locations. The tests comparing trace element concentrations between the lake nearest the dam and the East Fork showed mixed results—large median dissolved manganese concentrations in lake bottom samples in the summer and in East Fork near-surface samples in the non-summer period. The results of rank-sum tests comparing selected properties, 5-day biological oxygen demand, bacteria, nutrients, and total organic carbon in the eastern tributaries with those in the western tributaries, in the eastern tributaries with those in the Trinity River, and in the western tributaries with those in the Trinity River during the same season (summer or non-summer) at the same relative streamflow (low-medium or high) showed that significant differences were more common than not. In the comparisons of the eastern tributaries with the western tributaries that resulted in significant differences, medians of the western tributaries were larger for all properties and constituents except total organic carbon; in the comparisons of the eastern tributaries with the Trinity River that resulted in significant differences, medians were larger for the Trinity River in about 60 percent of the tests; and in the comparisons of the western tributaries with the Trinity River that resulted in significant differences, medians were larger for the western tributaries in about 60 percent of the tests. In the tests comparing trace elements between the eastern and western tributaries during the same season at the same relative streamflow, five of the eight tests showed no significant differences; between the eastern tributaries and the Trinity River, all eight tests showed significant differences, with eastern tributary medians larger in all tests; and between the western tributaries and the Trinity River, seven of the eight tests showed significant differences, with western tributary medians larger in all seven tests. The tests comparing selected properties, 5-day biological oxygen demand, nutrients, and total organic carbon between the eastern tributaries and the East Fork of Lake Houston, between the western tributaries and the West Fork of Lake Houston, and between the Trinity River and the lake nearest the dam, the East Fork, and the West Fork during the same season (summer or nonsummer) yielded significant differences in about 60 percent of the tests. No discernible pattern emerged to associate significant differences with season. In the tests comparing trace elements between the tributaries and the respective forks of the lake to which the tributaries drain, iron concentrations were significantly different in three of the four tests, with median concentrations larger in the tributaries. All the tests comparing manganese between the Trinity River and the three locations in the lake yielded significant differences, with larger median concentrations in the lake.

Texas↗
USGS2010

Global research priorities for sea turtles: Informing management and conservation in the 21st century

Over the past 3 decades, the status of sea turtles and the need for their protection to aid population recovery have increasingly captured the interest of government agencies, non-governmental organisations (NGOs) and the general public worldwide. This interest has been matched by increased research attention, focusing on a wide variety of topics relating to sea turtle biology and ecology, together with the interrelations of sea turtles with the physical and natural environments. Although sea turtles have been better studied than most other marine fauna, management actions and their evaluation are often hindered by the lack of data on turtle biology, human–turtle interactions, turtle population status and threats. In an effort to inform effective sea turtle conservation a list of priority research questions was assembled based on the opinions of 35 sea turtle researchers from 13 nations working in fields related to turtle biology and/or conservation. The combined experience of the contributing researchers spanned the globe as well as many relevant disciplines involved in conservation research. An initial list of more than 200 questions gathered from respondents was condensed into 20 metaquestions and classified under 5 categories: reproductive biology, biogeography, population ecology, threats and conservation strategies.

Endangered Species Research↗
USGS2007

Seabirds as indicators of marine ecosystems: Introduction: A modern role for seabirds as indicators

A key requirement for implementing ecosystem-based management is to obtain timely information on significant fluctuations in the ecosystem (Botsford et al. 1997). However, obtaining all necessary information about physical and biological changes at appropriate temporal and spatial scales is a daunting task. Intuitively, one might assume that physical data are more important for the interpretation of ecosystem changes than biological data, but analyses of time series data suggest otherwise: physical data are more erratic and often confusing over the short term compared to biological data, which tend to fluctuate less on annual time scales (Hare & Mantua 2000). Even so, biological time-series may also be confusing when coexisting marine species respond differently to ecosystem variability. For example, while warming temperatures in the Gulf of Alaska following the 1976 to 1977 regime shift favored an increase in gadoids and flatfish, a variety of forage fish and pandalid shrimp species virtually disappeared (Anderson & Piatt 1999). Zooplankton communities in the Gulf of Alaska also demonstrated similar patterns of response (Francis et al. 1998). At the basin scale, favorable conditions for salmon in Alaska following the regime shift were matched inversely by poor conditions in the California Current (Francis et al. 1998). In marine birds, subtropical species increased, while subarctic ones decreased during a warming phase in the southern California Bight. Clearly, no single index can tell the whole story accurately. Multi-species, multi-region, and multi-trophic level approaches are needed to quantify fluctuations in marine ecosystem processes and in the distribution and abundance of its inhabitants, to determine critical parameter thresholds and to use this information in management and marine conservation.

Marine Ecology Progress Series↗
USGS2015

Soil bacterial and fungal community responses to nitrogen addition across soil depth and microhabitat in an arid shrubland

Arid shrublands are stressful environments, typified by alkaline soils low in organic matter, with biologically-limiting extremes in water availability, temperature, and UV radiation. The widely-spaced plants and interspace biological soil crusts in these regions provide soil nutrients in a localized fashion, creating a mosaic pattern of plant- or crust-associated microhabitats with distinct nutrient composition. With sporadic and limited rainfall, nutrients are primarily retained in the shallow surface soil, patterning biological activity. We examined soil bacterial and fungal community responses to simulated nitrogen (N) deposition in an arid Larrea tridentata - Ambrosia dumosa field experiment in southern Nevada, USA, using high-throughput sequencing of ribosomal RNA genes. To examine potential interactions among the N application, microhabitat and soil depth, we sampled soils associated with shrub canopies and interspace biological crusts at two soil depths (0–0.5 or 0–10 cm) across the N-amendment gradient (0, 7, and 15 kg ha −1 yr −1 ). We hypothesized that localized compositional differences in soil microbiota would constrain the impacts of N addition to a microhabitat distribution that would reflect highly localized geochemical conditions and microbial community composition. The richness and community composition of both bacterial and fungal communities differed significantly by microhabitat and with soil depth in each microhabitat. Only bacterial communities exhibited significant responses to the N addition. Community composition correlated with microhabitat and depth differences in soil geochemical features. Given the distinct roles of soil bacteria and fungi in major nutrient cycles, the resilience of fungi and sensitivity of bacteria to N amendments suggests that increased N input predicted for many arid ecosystems could shift nutrient cycling toward pathways driven primarily by fungal communities.

Frontiers in Microbiology↗
USGS1989

Mammals of the Braulio Carrillo- La Selva Complex, Costa Rica

Costa Rica's La Selva-Braulio Carrillo complex encompasses a 60-km protected corridor of Caribbean rain and cloud forest extending from 30 m at the La Selva Biological Station to 2,906 m at the top of Volcán Barva. The 52,000-ha complex covers four life zones and two transitional zones, including tropical wet forest, tropical wet forest cool-transition, tropical premontane wet-transition rain forest, tropical premontane rain forest, lower montane rain forest, and montane rain forest. Located in the northeastern part of the country, the area is representative of Central American Caribbean slope forests that extend from Mexico to Panama. The extensive elevational gradient of the complex provides protected habitat for a variety of altitudinal migrants. With support from the National Geographic Society and Rice Foundation, the Organization for Tropical Studies organized a biological survey of the complex in early 1986. The mammal team worked at six sites along the elevational transect established by the expedition: 300 m, 700 m, 1,000 m, 1,500 m, 2,050 m, and 2,600 m. We supplemented our collecting records with unpublished records made available by colleagues, records in the published literature, and specimens in museum collections. In addition, observations recorded by a variety of observers at the La Selva Biological Station are summarized. The mammal fauna of the complex comprises 142 species including 79 bats, 23 rodents, 15 carnivores, 7 marsupials, 6 edentates, 4 artiodactyls, 3 primates, 2 rabbits, 2 shrews, and 1 perissodactyl. At least 10 additional species are likely to occur there. The only species of mammal likely to have been extirpated from the area is the giant anteater. Recognizing the importance of the area to wildlife and to mankind in general, the government of Costa Rica added 13,500 ha to the complex on 13 April 1986. This area, previously known as the “Zona Protectora,” provided the mid-elevational link between the lowlands of the La Selva Biological Station and the montane forests of Braulio Carrillo National Park. Unfortunately, destruction of the rain forests surrounding the complex will soon render it an isolated island of protected forest. Thus, the area will become increasingly valuable as a refuge for many species with home ranges that require extensive tracts of undisturbed habitat.

North American Fauna↗
USGS2014

Sources of global climate data and visualization portals

Climate is integral to the geophysical foundation upon which ecosystems are structured. Knowledge about mechanistic linkages between the geophysical and biological environments is essential for understanding how global warming may reshape contemporary ecosystems and ecosystem services. Numerous global data sources spanning several decades are available that document key geophysical metrics such as temperature and precipitation, and metrics of primary biological production such as vegetation phenology and ocean phytoplankton. This paper provides an internet directory to portals for visualizing or servers for downloading many of the more commonly used global datasets, as well as a description of how to write simple computer code to efficiently retrieve these data. The data are broadly useful for quantifying relationships between climate, habitat availability, and lower-trophic-level habitat quality - especially in Arctic regions where strong seasonality is accompanied by intrinsically high year-to-year variability. If defensible linkages between the geophysical (climate) and the biological environment can be established, general circulation model (GCM) projections of future climate conditions can be used to infer future biological responses. Robustness of this approach is, however, complicated by the number of direct, indirect, or interacting linkages involved. For example, response of a predator species to climate change will be influenced by the responses of its prey and competitors, and so forth throughout a trophic web. The complexities of ecological systems warrant sensible and parsimonious approaches for assessing and establishing the role of natural climate variability in order to substantiate inferences about the potential effects of global warming.

Conference Paper↗
USGS2015

Responses of macroinvertebrate community metrics to a wastewater discharge in the Upper Blue River of Kansas and Missouri, USA

The Blue River Main wastewater treatment facility (WWTF) discharges into the upper Blue River (725 km2), and is recently upgraded to implement biological nutrient removal. We measured biotic condition upstream and downstream of the discharge utilizing the macroinvertebrate protocol developed for Kansas streams. We examined responses of 34 metrics to determine the best indicators for discriminating site differences and for predicting biological condition. Significant differences between sites upstream and downstream of the discharge were identified for 15 metrics in April and 12 metrics in August. Upstream biotic condition scores were significantly greater than scores at both downstream sites in April (p = 0.02), and in August the most downstream site was classified as non-biologically supporting. Thirteen EPT taxa (Ephemeroptera, Plecoptera, Trichoptera) considered intolerant of degraded stream quality were absent at one or both downstream sites. Increases in tolerance metrics and filtering macroinvertebrates, and a decline in ratio of scrapers to filterers all indicated effects of increased nutrient enrichment. Stepwise regressions identified several significant models containing a suite of metrics with low redundancy (R2 = 0.90 - 0.99). Based on the rapid decline in biological condition downstream of the discharge, the level of nutrient removal resulting from the facility upgrade (10% - 20%) was not enough to mitigate negative effects on macroinvertebrate communities.

Kansas and Missouri↗
USGS2009

Fishway evaluations for better bioengineering: An integrative approach

Effective fishway design requires extensive integration of biological and hydraulic data. Many relevant biological parameters remain poorly characterized, however, and the lack of adequate biological data has long been recognized as a central weakness in fish passage technology. This is of particular concern given the growing recognition of the importance of passing a broad diversity of species. Part of the reason for this weakness is the difficulty of identifying relevant biological, hydraulic, and other physical parameters. We propose that by both exploring questions suggested by current knowledge, and also by increasing the frequency and refining the methods with which fishways are evaluated, two results can be achieved: our understanding of design effectiveness can be improved, and research questions can be prioritized through adaptive management. We describe a framework and rationale for fishway evaluations that identifies several promising avenues of research. Understanding correlates of passage performance is increasingly important as fish passage needs expand on a global scale.

Book chapter↗
USGS2014

The geobiology of sediment-hosted mineral deposits

The role of biological processes in the formation of sediment-hosted ore deposits has long been recognized. In this review, we focus on the biogeochemical cycling of C, Mn, Fe, and S as they relate to the formation of sediment-hosted Mn and Fe deposits, metalliferous black shales, clastic-dominated (CD) Pb-Zn deposits, and phosphorites. Biological mediation of ore-forming processes occurs over large spans of space and time. The most important step is oxygenic photosynthesis, a biological innovation dating from the Archean Eon that releases free oxygen into the surface oceans and atmosphere and delivers chemical potential, in the form of reduced carbon, to the seafloor. Photosynthetic oxygen is available to precipitate dissolved Fe 2 + and Mn 2 +, and therefore it augments the formation of sedimentary Mn and Fe deposits, and drives oxidative weathering of exposed crust, thereby delivering sulfate and transition metals to the ocean. Where reduced carbon accumulates in the deep oceans and on the seafloor, bacterial sulfate reduction produces hydrogen sulfide thereby facilitating the formation of metalliferous black shales, sediment-hosted Pb and Zn sulfide deposits, and phosphorites. Thus, an understanding of major biogeochemical processes and how they have evolved over time is required in order to refine genetic models for sediment-hosted ore deposits and to guide future mineral exploration. A close secular relationship between deposit formation and trends in major biogeochemical cycles provides a potentially powerful tool for mineral resource assessment. Sedimentary basins that formed during a time that is known to lack deposits of a particular metal can be eliminated during exploration programs, whereas others of permissive ages should be considered priorities. For example, sedimentary basins older than ca. 1.8 Ga are unlikely to contain large CD Pb-Zn deposits, and basins that formed between 1.6 and 0.6 Ga are not prospective for phosphorites. Recent technological advances in the application of nanometer-, micron-, and bulk-scale analytical techniques allow for imaging of complex biological structures and have provided new insights into the role of bacteria, not only in direct formation of mineral deposits, but also in leaching of metals from ore and mineralized rocks. Future exploration for, and exploitation of, mineral deposits may include offshore or land-based, low-grade, high-tonnage targets; understanding the role of bacteria in mineral growth, mineral dissolution, and redox transformations will aid in predicting where such deposits exist, and how metal extraction from ores can be enhanced.

Book chapter↗
USGS2013

Managing the effects of endocrine disrupting chemicals in wastewater-impacted streams

A revolution in analytical instrumentation circa 1920 greatly improved the ability to characterize chemical substances. This analytical foundation resulted in an unprecedented explosion in the design and production of synthetic chemicals during and post-World War II. What is now often referred to as the 2nd Chemical Revolution has provided substantial societal benefits; with modern chemical design and manufacturing supporting dramatic advances in medicine, increased food production, and expanding gross domestic products at the national and global scales as well as improved health, longevity, and lifestyle convenience at the individual scale. Presently, the chemical industry is the largest manufacturing sector in the United States (U.S.) and the second largest in Europe and Japan, representing approximately 5% of the Gross Domestic Product (GDP) in each of these countries. At the turn of the 21st century, the chemical industry was estimated to be worth more than $1.6 trillion and to employ over 10 million people, globally. During the first half of the 20th century, the chemical sector expanded rapidly, the chemical industry enjoyed a generally positive status in society, and chemicals were widely appreciated as fundamental to individual and societal quality of life. Starting in the 1960s, however, the environmental costs associated with the chemical industry increasingly became the focus, due in part to the impact of books like “Silent Spring” and “Our Stolen Future” and to a number of highly publicized environmental disasters. Galvanizing chemical industry disasters included the 1976 dioxin leak north of Milan, Italy, the Love Canal evacuations in Niagara, New York beginning in 1978, and the Union Carbide leak in Bhopal, India in 1984. Understanding the environmental impact of synthetic compounds is essential to any informed assessment of net societal benefit, for the simple reason that any chemical substance that is in commercial production or use will eventually find its way to the environment. Not surprisingly given the direct link to profits, manufacturers intensely investigate and routinely document the potential benefits of new chemicals and chemical products. In contrast, the environmental risks associated with chemical production and uses are often investigated less intensely and are poorly communicated. An imbalance in the risk-benefit analysis of any synthetic chemical substance or naturally occurring chemical, which presence and concentration in the environment largely reflects human activities and management, is a particular concern owing to the fundamental link between chemistry and biology. Biological organisms are intrinsically a homeostatic balance of innumerable internal and external chemical interactions and, thus, inherently sensitive to changes in the external chemical environment.

Book chapter↗
USGS1977

Coal: special report number 2

The Fish and Wildlife Service has extensive biological expertise within the Department of Interior and exerts national leadership in the management and protection of the nation's fish and wildlife resources, their habitat, and environment. Specifically, the Office of Biological Services obtains and assimilates biological and environmental data and identifies additional informational needs and means to provide environmental and biological input into major natural resource decisions. Coal Coordinators assist in carrying out Fish and Wildlife Service involvement in the Interior Department Coal Leasing Program through a multi-stage process designed to assemble existing fish and wildlife inventory data and to prioritize fish and wildlife values in areas subject to coal leasing and associated development. This report is designed to identify possible areas of concern for wildlife and its habitat in Wyoming in the development of coal and the associate implication of land use changes. This report summarizes past and present development of the coal resource in Wyoming in anticipation of future identification of data needs for making sound resource decisions in the development of coal.

FWS/OBS↗