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At least 1,207 records · Page 67Linked to original sources
USGS1971

Palaeomagnetism and potassium-argon ages of volcanic rocks of Ngorongoro caldera, Tanzania

Natural remanent magnetization (NRM) has been measured in 21 lava flows and 1 tuff in the south-west wall of Ngorongoro caldera, Tanzania. The lowest three lavas are normally magnetized, the next two have intermediate directions, and the remainder are reversed; potassium-argon dating places the reversal at 2.45 My, corresponding to the Gauss Matuyama epoch boundary. Alternating-field demagnetization was effective in removing the ubiquitous lightning-produced secondary magnetizations, but partial thermal demagnetization was not. Curie temperatures of the lavas fell into two groups: 250°–350°C and 570°–585°C, probably corresponding to unoxidized and oxidized titanomagnetites respectively. NRM directions in the lavas occurred in several distinct and stratigraphically continuous groups, suggesting intermittent eruption of groups of lavas. No correspondence was found between NRM groups and other parameters, such as Curie temperatures. The dispersion of mean NRM directions is large in comparison with late Quaternary lavas from low latitudes in the Pacific basin, but probably is not large relative to the proportion of the geomagnetic field in Africa that is non-dipolar. The mean palaeomagnetic pole is offset 10.5° from the geographic pole, but because of the large dispersion, the difference is not considered significant.

Ngorongoro caldera↗
USGS1988

Volumetric strain in relation to particle displacements for body and surface waves in a general viscoelastic half-space

Dilatational earth strain, associated with the radiation fields for several hundred local, regional, and teleseismic earthquakes, has been recorded over an extended bandwidth and dynamic range at four borehole sites near the San Andreas fault, CA. The general theory of linear viscoelasticity is applied to account for anelasticity of the near-surface materials and to provide a mathematical basis for interpretation of seismic radiation fields as detected simultaneously by co-located volumetric strain meters and seismometers. The general theory is applied to describe volumetric strain and displacement for general (homogeneous or inhomogeneous) P and S waves in an anelastic whole space. Solutions to the free-surface reflection problems for incident general P and S-I waves are used to evaluate the effect of the free surface on observations from co-located sensors. Corresponding expressions are derived for a Rayleigh-type surface wave on a linear viscoelastic half-space. The theory predicts a number of anelastic wave field characteristics that can be inferred from observation of volumetric strains and displacement fields as detected by co-located sensors that cannot be inferred from either sensor alone. -from Author

Geophysical Journal↗
USGS2007

Using conservation value to assess land restoration and management alternatives across a degraded oak savanna landscape

1. Managers considering restoration of landscapes often face a fundamental challenge - what should be the habitat composition of the restored landscape? We present a method for evaluating an important conservation trade-off inherent in making that decision. 2. Oak savannas and grasslands were historically widespread across central North America but are now rare. Today, in north-west Indiana, USA, habitats spanning a range of woody vegetation density, from nearly treeless open habitats to forests, occur across the conserved landscape where savannas probably once dominated. To understand the benefits of different potential landscape compositions, we evaluated how different proportions of five habitats - open, savanna, woodland, scrub and forest - might affect the conservation value of the north-west Indiana landscape for birds. Two variables of potential conservation importance were examined: species diversity, a measure of avian community richness, and conservation index, the percentage of a bird species' global population occurring on a hectare of landscape, summed across all bird species present. Higher values of conservation index were associated with higher local densities of globally more rare and more threatened species. 3. Conservation index and species diversity were correlated negatively across hypothetical landscapes composed of different proportions of the five habitats. Therefore, a management trade-off existed between conservation index and species diversity because landscapes that maximized species diversity differed from landscapes that maximized conservation index. 4. A landscape of 50% open, 22% savanna, 15% scrub and 13% forest was predicted to represent a compromise at which conservation index and species diversity reached the same percentage of their maxima. In contrast, the current landscape is dominated by forest. 5. Synthesis and applications. We quantified the trade-off between two potential aspects of a landscape's conservation value for birds - the landscape's ability to promote avian species diversity and the landscape's use by threatened avian species. This quantification allowed us to evaluate the ability of different landscape compositions to achieve preferable trade-off compromises, such as maximizing diversity for a given level of landscape use by threatened species. Managers can use these trade-off results to determine which landscape compositions are associated with particular conservation and management priorities.

Journal of Applied Ecology↗
USGS2012

Species richness effects on ecosystem multifunctionality depend on evenness, composition and spatial pattern

1. Recent studies have suggested that the simultaneous maintenance of multiple ecosystem functions (multifunctionality) is positively supported by species richness. However, little is known regarding the relative importance of other community attributes (e.g. spatial pattern, species evenness) as drivers of multifunctionality. 2. We conducted two microcosm experiments using model biological soil crust communities dominated by lichens to: (i) evaluate the joint effects and relative importance of changes in species composition, spatial pattern (clumped and random distribution of lichens), evenness (maximal and low evenness) and richness (from two to eight species) on soil functions related to nutrient cycling (β-glucosidase, urease and acid phosphatase enzymes, in situ N availability, total N, organic C, and N fixation), and (ii) assess how these community attributes affect multifunctionality. 3. Species richness, composition and spatial pattern affected multiple ecosystem functions (e.g. organic C, total N, N availability, β-glucosidase activity), albeit the magnitude and direction of their effects varied with the particular function, experiment and soil depth considered. Changes in species composition had effects on organic C, total N and the activity of β-glucosidase. Significant species richness × evenness and spatial pattern × evenness interactions were found when analysing functions such as organic C, total N and the activity of phosphatase. 4. The probability of sustaining multiple ecosystem functions increased with species richness, but this effect was largely modulated by attributes such as species evenness, composition and spatial pattern. Overall, we found that model communities with high species richness, random spatial pattern and low evenness increased multifunctionality. 5. Synthesis. Our results illustrate how different community attributes have a diverse impact on ecosystem functions related to nutrient cycling, and provide new experimental evidence illustrating the importance of the spatial pattern of organisms on ecosystem functioning. They also indicate that species richness is not the only biotic driver of multifunctionality, and that particular combinations of community attributes may be required to maximize it.

Journal of Ecology↗
USGS2006

Differences in Ichthyophonus prevalence and infection severity between upper Yukon River and Tanana River chinook salmon, Oncorhynchus tshawytscha (Walbaum), stocks

Two genetically distinct populations of chinook salmon, Oncorhynchus tshawytscha (Walbaum), were simultaneously sampled at the confluence of the Yukon and Tanana rivers in 2003. Upper Yukon-Canadian fish had significantly higher infection prevalence as well as more severe infections (higher parasite density in heart tissue) than the lower Yukon-Tanana River fish. Both populations had migrated the same distance from the mouth of the Yukon River at the time of sampling but had significantly different distances remaining to swim before reaching their respective spawning grounds. Multiple working hypotheses are proposed to explain the differences between the two stocks: (1) the two genetically distinct populations have different inherent resistance to infection, (2) genetically influenced differences in feeding behaviour resulted in temporal and/or spatial differences in exposure, (3) physiological differences resulting from different degrees of sexual maturity influenced the course of disease, and (4) the most severely infected Tanana River fish either died en route or fatigued and were unable to complete their migration to the Tanana River, thus leaving a population of apparently healthier fish. ?? 2006 Blackwell Publishing Ltd.

Alaska↗
USGS2011

Viral replication in excised fin tissues (VREFT) corresponds with prior exposure of Pacific herring, Clupea pallasii (Valenciennes), to viral haemorrhagic septicaemia virus (VHSV)

Procedures for a viral replication in excised fin tissue (VREFT) assay were adapted to Pacific herring, Clupea pallasii, and optimized both to reduce processing time and to provide the greatest resolution between na??ve herring and those previously exposed to viral haemorrhagic septicaemia virus (VHSV), Genogroup IVa. The optimized procedures included removal of the left pectoral fin from a euthanized fish, inoculation of the fin with >105 plaque-forming units (PFU) mL-1 VHSV for 1 h, rinsing the fin in fresh medium six times to remove unadsorbed virions, incubation of the fin in fresh medium for 4 days and enumeration of the viral titre in a sample of the incubation medium by plaque assay. The optimized VREFT assay was effective at identifying the prior exposure history of laboratory-reared Pacific herring to VHSV. The geometric mean VREFT value was significantly greater (P < 0.01) among na??ve herring (1.2 ?? 103 PFU mL-1) than among groups that survived exposure to VHSV (1.0-2.9 ?? 102 PFU mL-1); additionally, the proportion of cultures with no detectable virus was significantly greater (P = 0.0002) among fish that survived exposure to VHSV (39-47%) than among na??ve fish (3.3%). The optimized VREFT assay demonstrates promise for identifying VHSV exposure history and forecasting disease potential in populations of wild Pacific herring. ?? 2010 Blackwell Publishing Ltd.

Journal of Fish Diseases↗
USGS2010

Prevention of infectious diseases in aquaculture

Infectious diseases remain one of the most important limitations to the successful propagation of aquatic animals. Most of the losses caused by pathogens in aquaculture could be prevented by health inspection, adequate environment and sound management practices. Effective control measures, mainly based upon 1) avoidance of pathogens 2) modification of the environment 3) improvement of host resistance 4) vaccination and 5) chemoprophylaxis are described.

Journal of Veterinary Medicine, Series B↗
USGS2009

A tangled tale of two teal: Population history of the grey Anas gracilis and chestnut teal a. castanea of Australia

Two Australian species of teal (Anseriformes: Anatidae: Anas), the grey teal Anas gracilis and the chestnut teal A. castanea, are remarkable for the zero or near-zero divergence recorded between them in earlier surveys of mitochondrial DNA (mtDNA) diversity. We confirmed this result through wider geographical and population sampling as well as nucleotide sampling in the more rapidly evolving mtDNA control region. Any data set where two species share polymorphism as is the case here can be explained by a model of gene flow through hybridization on one hand or by incomplete lineage sorting on the other hand. Ideally, analysis of such shared polymorphism would simultaneously estimate the likelihood of both phenomena. To do this, we used the underlying principle of the IMa package to explore ramifications to understanding population histories of A. gracilis and A. castanea. We cannot reject that hybridization occurs between the two species but an equally or more plausible finding for their nearly zero divergence is incomplete sorting following very recent divergence between the two, probably in the mid-late Pleistocene. Our data add to studies that explore intermediate stages in the evolution of reciprocal monophyly and paraphyletic or polyphyletic relationships in mtDNA diversity among widespread Australian birds. ?? 2009 J. Avian Biol.

Journal of Avian Biology↗
USGS2007

Infiltration of atrazine and metabolites from a stream to an alluvial aquifer

ABSTRACT: The infiltration of atrazine, deethylatrazine, and deisopropylatrazine from Walnut Creek, a tributary stream, to the alluvial valley aquifer along the South Skunk River in central Iowa occurred where the stream transects the river's flood plain. A preliminary estimate indicated that the infiltration was significant and warrants further investigation. Infiltration was estimated by measuring the loss of stream discharge in Walnut Creek and the concentrations of atrazine and its metabolites deethylatrazine and deisopropylatrazine, in ground water 1 m beneath the streambed. Infiltration was estimated before application of agrichemicals to the fields during a dry period on April 7, 1994, and after application of agrichemicals during a period of small runoff on June 8, 1994. On April 7, the flux of atrazine, deethylatrazine, and deisopropylatrazine from Walnut Creek into the alluvial valley aquifer ranged from less than 10 to 60 (μg/d)/m 2 , whereas on June 8 an increased flux ranged from 270 to 3060 (μg/d)/m 2 . By way of comparison, the calculated fluxes of atrazine beneath Walnut Creek, for these two dates, were two to five orders of magnitude greater than an estimated flux of atrazine to ground water caused by leaching from a field on a per-unit-area basis. Furthermore, the unit-area flux rates of water from Walnut Creek to the alluvial valley aquifer were about three orders of magnitude greater than estimated recharge to the alluvial aquifer from precipitation. The large flux of chemicals from Walnut Creek to the alluvial valley aquifer was due in part to the conductive streambed and rather fast ground water velocities; average vertical hydraulic conductivity through the streambed was calculated as 35 and 90 m/d for the two sampling dates, and estimated ground water velocities ranged from 1 to 5 m/d.

Journal of the American Water Resources Associatio↗
USGS2007

Estimation of long-term discharge statistics by regional adjustment

A regional adjustment relationship was developed to estimate long-term (30-year) monthly median discharges from short term (three-year) records. This method differs from traditional approaches in that it is based on site-specific discharge data but does not require correlation of these data with discharges from a single hydrologically similar long-term gage. The method is shown to be statistically robust, and applicable to statistics other than the median.A regional adjustment relationship was developed to estimate long-term (30-year) monthly discharges from short term (three-year) records. This method differs from traditional approaches in that it is based on site-specific discharge data but does not require correlation of these data with discharges from a single hydrologically similar long-term gage. The method is shown to be statistically robust, and applicable to statistics other than the median.

Journal of the American Water Resources Associatio↗
USGS2007

Relative influence of streamflows in assessing temporal variability in stream habitat

The effects of streamflows on temporal variation in stream habitat were analyzed from the data collected 6-11 years apart at 38 sites across the United States. Multiple linear regression was used to assess the variation in habitat caused by streamflow at the time of sampling and high flows between sampling. In addition to flow variables, the model also contained geomorphic and land use factors. The regression model was statistically significant (p < 0.05; R 2 = 0.31-0.46) for 5 of 14 habitat variables: mean wetted stream depth, mean bankfull depth, mean wetted stream width, coefficient of variation of wetted stream width, and the percent frequency of bank erosion. High flows between samples accounted for about 16% of the total variation in the frequency of bank erosion. Streamflow at the time of sampling was the main source of variation in mean stream depth and contributed to the variation in mean stream width and the frequency of bank erosion. Urban land use (population change) accounted for over 20% of the total variation in mean bankfull depth, 15% of the total variation in the coefficient of variation of stream width, and about 10% of the variation in mean stream width. ?? 2007 American Water Resources Association.

Journal of the American Water Resources Associatio↗
USGS2023

Local weather and endogenous factors affect the initiation of migration in short- and medium-distance songbird migrants

Migratory birds employ a variety of mechanisms to ensure appropriate timing of migration based on integration of endogenous and exogenous information. The cues to fatten and depart from the non-breeding area are often linked to exogenous cues such as temperature or precipitation and the endogenous program. Shorter distance migrants should rely heavily on environmental information when initiating migration given relatively close proximity to the breeding area. However, the ability to fatten and subsequently depart may be linked to individual circumstances, including current fuel load and body size. For early and late departing migrants, we investigate effects of temperature, precipitation, lean body mass, fuel load and day of year on the initiation of migration (i.e. fuel load and departure timing) from the non-breeding region by analyzing 21 years of banding data for four species of short- and medium-distance migrants. Temperatures at the non-breeding area were related to temperatures at potential stopover areas. Despite local cues being predictive of conditions further north, the amount variation explained by local weather conditions in our models differed by species and temporal period but was low overall (< 33% variation explained). For each species, we also compared lean body mass and fuel load between early and late departing migrants, which showed mixed results. Our combined results suggest that most individuals migrating short or medium distances in our study did not time the initiation of migration with local predictive cues alone, but rather other factors such as lean body mass, fuel load, day of year, which may be a proxy for the endogenous program, and those beyond the scope of our study also influenced the initiation of migration. Our study contributes to understanding which factors influence departure decisions of short- and medium-distance migrants as they transition from the non-breeding to the migratory phase of the annual cycle.

Louisiana↗
USGS2021

Gulf Coast vicariance shapes phylogeographic history of a North American freshwater mussel species complex

Aim Freshwater mussels share habitat and are parasites of freshwater fishes during the larval life stage. Therefore, models of fish biogeography may also explain the historical biogeography of freshwater mussels. We tested this assumption using predictions of three biogeographic models constructed for northern Gulf of Mexico drainages on a freshwater mussel species complex. Specifically, we tested (1) if speciation was due to vicariant events of fluctuating sea levels that separated lineages east‐west of the Mobile Basin (Central Gulf Coast speciation hypothesis), (2) if the timing of divergences occurred 8.5–3.5 MYA (Gulf Coast allopatric speciation model) and (3) if diversification in Mississippi River populations was recent and for evidence of population increase consistent with range expansion into northern deglaciated regions (Pleistocene glaciation model). Location Eastern North America. Taxon Freshwater mussels (Bivalvia: Unionidae), Lampsilis teres and L. floridensis . Methods We collected 249 specimens from 73 localities across the group's distribution. We used three molecular markers (COI, NDI & ITSI) to conduct time calibrated Bayesian phylogenetic analyses, phylogeographic analyses (AMOVA & SAMOVA) and demographic analyses including Bayesian skyline plots. Results Lampsilis teres and L. floridensis are allopatric species whose distributions meet at the eastern edge of the Mobile Basin. Speciation was estimated to occur in the late Miocene. Populations from isolated river systems surrounding the Gulf of Mexico are almost all monophyletic. Mississippi drainage samples formed a shallow clade with recent diversification and showed evidence of recent population expansion. Main conclusions The historical biogeography of the L. teres species complex is broadly consistent with tested ichthyofaunal models. The timing of speciation and intraspecific divergences correspond to low sea‐level events suggesting that Gulf Coast sea‐level fluctuations are responsible for dispersal (sea‐level recession) and subsequent cladogenesis (sea‐level inundation). Consistent with numerous other freshwater studies, we found the Mobile Basin to be a suture zone, which may be due to the narrow, offshore continental shelf.

Journal of Biogeography↗
USGS2009

Complete and draft genome sequences of six members of the aquificales

The Aquificales are widespread in marine and terrestrial hydrothermal environments. Here, we report the complete and draft genome sequences of six new members of the Aquificales : two marine species, Persephonella marina strain EX-H1 and Hydrogenivirga strain 128-5-R1 (from the East Pacific Rise, 9°50.3′N, 104°17.5′W, and the Eastern Lau Spreading Center, 176°11.5′W, 20°45.8′S, respectively), and four terrestrial isolates, Sulfurihydrogenibium azorense strain Az-Fu1, Sulfurihydrogenibium yellowstonense strain SS-5, and Sulfurihydrogenibium strain Y03AOP1 (from Furnas, Azores, Portugal, and Calcite Springs and Obsidian Pool in Yellowstone National Park, United States, respectively), and the only thermoacidophilic isolate, Hydrogenobaculum strain Y04AAS1 (from a stream adjacent to Obsidian Pool). Significant differences among the different species exist that include nitrogen metabolism, hydrogen utilization, chemotaxis, and signal transduction, providing insights into their ecological niche adaptations.

Journal of Bacteriology↗
USGS2013

The role of virulence for in vivo superinfection fitness of a vertebrate RNA virus

We have developed a novel, in vivo superinfection fitness assay to examine superinfection dynamics and the role of virulence in superinfection fitness. This assay involves controlled, sequential infections of a natural, vertebrate host, Oncorhynchus mykiss (rainbow trout), with variants of a co-evolved viral pathogen, infectious hematopoietic necrosis virus (IHNV). Intervals between infections ranged from 12 hours to 7 days, and both frequency of superinfection and viral replication levels were examined. Using virus genotype pairs of equal and unequal virulence, we observed that superinfection generally occurred with decreasing frequency as the interval between exposures to each genotype increased. For both the equal virulence and unequal virulence genotype pairs, the frequency of superinfection was the same regardless of which genotype was used in the primary exposure. However, the ability to replicate in the context of superinfection did not differ between the genotypes of equal or unequal virulence tested here. For both genotype pairs, the mean viral load of the secondary virus was significantly reduced in superinfection, while primary virus replication was unaffected. Our results demonstrate, for the two genotype pairs examined, that superinfection restriction does occur for IHNV, and that higher virulence did not correlate with a significant difference in superinfection fitness. To our knowledge, this is the first assay to examine the role of virulence of an RNA virus in determining superinfection fitness dynamics within a natural, vertebrate host.

Journal of Virology↗
USGS2014

Evolution of puma lentivirus in bobcats ( Lynx rufus ) and mountain lions ( Puma concolor ) in North America

Mountain lions ( Puma concolor ) throughout North and South America are infected with puma lentivirus clade B (PLVB). A second, highly divergent lentiviral clade, PLVA, infects mountain lions in southern California and Florida. Bobcats ( Lynx rufus ) in these two geographic regions are also infected with PLVA, and to date, this is the only strain of lentivirus identified in bobcats. We sequenced full-length PLV genomes in order to characterize the molecular evolution of PLV in bobcats and mountain lions. Low sequence homology (88% average pairwise identity) and frequent recombination (1 recombination breakpoint per 3 isolates analyzed) were observed in both clades. Viral proteins have markedly different patterns of evolution; sequence homology and negative selection were highest in Gag and Pol and lowest in Vif and Env. A total of 1.7% of sites across the PLV genome evolve under positive selection, indicating that host-imposed selection pressure is an important force shaping PLV evolution. PLVA strains are highly spatially structured, reflecting the population dynamics of their primary host, the bobcat. In contrast, the phylogeography of PLVB reflects the highly mobile mountain lion, with diverse PLVB isolates cocirculating in some areas and genetically related viruses being present in populations separated by thousands of kilometers. We conclude that PLVA and PLVB are two different viral species with distinct feline hosts and evolutionary histories.

North America↗