USGS Science⌕ Search

SEARCH · USGS Science

Results for “Functional Ecology”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,207 records · Page 67Linked to original sources

Ecological values of shallow-water habitats: Implications for the restoration of disturbed ecosystems

A presumed value of shallow-habitat enhanced pelagic productivity derives from the principle that in nutrient-rich aquatic systems phytoplankton growth rate is controlled by light availability, which varies inversely with habitat depth. We measured a set of biological indicators across the gradient of habitat depth within the Sacramento–San Joaquin River Delta (California) to test the hypothesis that plankton biomass, production, and pelagic energy flow also vary systematically with habitat depth. Results showed that phytoplankton biomass and production were only weakly related to phytoplankton growth rates whereas other processes (transport, consumption) were important controls. Distribution of the invasive clam Corbicula fluminea was patchy, and heavily colonized habitats all supported low phytoplankton biomass and production and functioned as food sinks. Surplus primary production in shallow, uncolonized habitats provided potential subsidies to neighboring recipient habitats. Zooplankton in deeper habitats, where grazing exceeded phytoplankton production, were likely supported by significant fluxes of phytoplankton biomass from connected donor habitats. Our results provide three important lessons for ecosystem science: (a) in the absence of process measurements, derived indices provide valuable information to improve our mechanistic understanding of ecosystem function and to benefit adaptive management strategies; (b) the benefits of some ecosystem functions are displaced by water movements, so the value of individual habitat types can only be revealed through a regional perspective that includes connectedness among habitats; and (c) invasive species can act as overriding controls of habitat function, adding to the uncertainty of management outcomes.

Ecosystems↗

Synthesizing professional opinion and published science to build a conceptual model of Walleye recruitment

Understanding and predicting recruitment, longstanding goals in fisheries science and ecology, are complicated by variation in the importance of environmental drivers coupled with the dynamic nature of individual ecosystems. Developing an understanding of recruitment from well-monitored stocks offers an opportunity to overcome these complexities. We used a systematic literature review, a survey, and a workshop attended by professionals with expertise in recruitment of Walleye Sander vitreus to identify common environmental drivers of Walleye recruitment and additional sources of variation (i.e., context dependencies) among populations. The importance of individual environmental drivers, as well as the direction of their influence, differed as a function of geographic region, lake surface area, and Walleye life stage. The literature suggested abiotic conditions (e.g., temperature) during the first year of life were influential in determining recruitment. Professional opinion noted the importance of biotic factors, with prey availability and predation risk having the most consistent relationships with recruitment. We synthesized this information to propose a conceptual model that illustrates the suite of characteristics that shape Walleye recruitment over large spatial and temporal scales. Our findings emphasize the importance of first-year growth and system-specific contextual factors, which can alter the relative importance of the environmental drivers of recruitment.

Fisheries Magazine↗

Exotic annual Bromus invasions: Comparisons among species and ecoregions in the western United States

Exotic annual Bromus species are widely recognized for their potential to invade, dominate, and alter the structure and function of ecosystems. In this chapter, we summarize the invasion potential, ecosystem threats, and management strategies for different Bromus species within each of five ecoregions of the western United States. We characterize invasion potential and threats in terms of ecosystem resistance to Bromus invasion and ecosystem resilience to disturbance with an emphasis on the importance of fire regimes. We also explain how soil temperature and moisture regimes can be linked to patterns of resistance and resilience and provide a conceptual framework that can be used to evaluate the relative potential for invasion and ecological impact of the dominant exotic annual Bromus species in the western United States.

Book chapter↗

Increasing floodplain connectivity through urban stream restoration increases nutrient and sediment retention

Stream restoration practices frequently aim to increase connectivity between the stream channel and its floodplain to improve channel stability and enhance water quality through sediment trapping and nutrient retention. To measure the effectiveness of restoration and to understand the drivers of these functional responses, we monitored five restored urban streams that represent a range of channel morphology and restoration ages. High and low elevation floodplain plots were established in triplicate in each stream to capture variation in floodplain connectivity. We measured ecosystem geomorphic and soil attributes, sediment and nutrient loading, and rates of soil nutrient biogeochemistry processes (denitrification; N and P mineralization) then used boosted regression trees (BRT) to identify controls on sedimentation and nutrient processing. Local channel and floodplain morphology and position within the river network controlled connectivity with increased sedimentation at sites downstream of impaired reaches and at floodplain plots near the stream channel and at low elevations. We observed that nitrogen loading (both dissolved and particulate) was positively correlated with denitrification and N mineralization and dissolved phosphate loading positively influenced P mineralization; however, none of these input rates or transformations differed between floodplain elevation categories. Instead, continuous gradients of connectivity were observed rather than categorical shifts between inset and high floodplains. Organic matter and nutrient content in floodplain soils increased with the time since restoration, which highlights the importance of recovery time after construction that is needed for restored systems to increase ecosystem functions. Our results highlight the importance of restoring floodplains downstream of sources of impairment and building them at lower elevations so they flood frequently, not just during bankfull events. This integrated approach has the greatest potential for increasing trapping of sediment, nutrients, and associated pollutants in restored streams and thereby improving water quality in urban watersheds.

North Carolina↗

Variable hybridization outcomes in trout are predicted by historical fish stocking and environmental context

Hybridization can profoundly affect the genomic composition and phenotypes of closely related species, and provides an opportunity to identify mechanisms that maintain reproductive isolation between species. Recent evidence suggests that hybridization outcomes within a species pair can vary across locations. However, we still don’t know how extensive variation in outcomes of hybridization is across geographic replicates, and what mechanisms drive that variation. In this study, we described hybridization outcomes across 27 locations in the North Fork Shoshone River basin (Wyoming, USA) where native Yellowstone cutthroat trout and introduced rainbow trout co-occur. We used genomic data and hierarchical Bayesian models to precisely identify ancestry of hybrid individuals. Hybridization outcomes varied across locations. In some locations, only rainbow trout and advanced backcrossed hybrids towards rainbow trout were present, while other locations had a broader range of ancestry, including both parental species and first-generation hybrids. Using an individual-based simulation, we found that outcomes of hybridization in the North Fork Shoshone River basin deviate substantially from what we would expect under assumptions of random mating and no selection against hybrids. Since this implies that some mechanisms of reproductive isolation function to maintain parental taxa and a diversity of hybrid types, we then modeled hybridization outcomes as a function of environmental variables and stocking history that are likely to affect prezygotic barriers to hybridization. Variables associated with history of fish stocking were the strongest predictors of hybridization outcomes, followed by environmental variables that might affect overlap in spawning time and location.

Wyoming↗

Production of greenhouse-grown biocrust mosses and associated cyanobacteria to rehabilitate dryland soil function

Mosses are an often-overlooked component of dryland ecosystems, yet they are common members of biological soil crust communities (biocrusts) and provide key ecosystem services, including soil stabilization, water retention, carbon fixation, and housing of N 2 fixing cyanobacteria. Mosses are able to survive long dry periods, respond rapidly to precipitation, and reproduce vegetatively. With these qualities, dryland mosses have the potential to be an excellent dryland restoration material. Unfortunately, dryland mosses are often slow growing in nature, and ex situ cultivation methods are needed to enhance their utility. Our goal was to determine how to rapidly produce, vegetatively, Syntrichia caninervis and S. ruralis , common and abundant moss species in drylands of North America and elsewhere, in a greenhouse. We manipulated the length of hydration on a weekly schedule (5, 4, 3, or 2 days continuous hydration per week), crossed with fertilization (once at the beginning, monthly, biweekly, or not at all). Moss biomass increased sixfold for both species in 4 months, an increase that would require years under dryland field conditions. Both moss species preferred short hydration and monthly fertilizer. Remarkably, we also unintentionally cultured a variety of other important biocrust organisms, including cyanobacteria and lichens. In only 6 months, we produced functionally mature biocrusts, as evidenced by high productivity and ecosystem-relevant levels of N 2 fixation. Our results suggest that biocrust mosses might be the ideal candidate for biocrust cultivation for restoration purposes. With optimization, these methods are the first step in developing a moss-based biocrust rehabilitation technology.

Restoration Ecology↗

Probability of acoustic transmitter detections by receiver lines in Lake Huron: results of multi-year field tests and simulations

Background Advances in acoustic telemetry technology have led to an improved understanding of the spatial ecology of many freshwater and marine fish species. Understanding the performance of acoustic receivers is necessary to distinguish between tagged fish that may have been present but not detected and from those fish that were absent from the area. In this study, two stationary acoustic transmitters were deployed 250 m apart within each of four acoustic receiver lines each containing at least 10 receivers (i.e., eight acoustic transmitters) located in Saginaw Bay and central Lake Huron for nearly 2 years to determine whether the probability of detecting an acoustic transmission varied as a function of time (i.e., season), location, and distance between acoustic transmitter and receiver. Distances between acoustic transmitters and receivers ranged from 200 m to >10 km in each line. The daily observed probability of detecting an acoustic transmission was used in simulation models to estimate the probability of detecting a moving acoustic transmitter on a line of receivers. Results The probability of detecting an acoustic transmitter on a receiver 1000 m away differed by month for different receiver lines in Lake Huron and Saginaw Bay but was similar for paired acoustic transmitters deployed 250 m apart within the same line. Mean probability of detecting an acoustic transmitter at 1000 m calculated over the study period varied among acoustic transmitters 250 m apart within a line and differed among receiver lines in Lake Huron and Saginaw Bay. The simulated probability of detecting a moving acoustic transmitter on a receiver line was characterized by short periods of time with decreased detection. Although increased receiver spacing and higher fish movement rates decreased simulated detection probability, the location of the simulated receiver line in Lake Huron had the strongest effect on simulated detection probability. Conclusions Performance of receiver lines in Lake Huron varied across a range of spatiotemporal scales and was inconsistent among receiver lines. Our simulations indicated that if 69 kHz acoustic transmitters operating at 158 dB in 10–30 m of freshwater were being used, then receivers should be placed 1000 m apart to ensure that all fish moving at 1 m s −1 or less will be detected 90% of days over a 2-year period. Whereas these results can be used as general guidelines for designing new studies, the irregular variation in acoustic transmitter detection probabilities we observed among receiver line locations in Lake Huron makes designing receiver lines in similar systems challenging and emphasizes the need to conduct post hoc analyses of acoustic transmitter detection probabilities.

Lake Huron↗

Calibrating and testing a gap model for simulating forest management in the Oregon Coast Range

The complex mix of economic and ecological objectives facing today's forest managers necessitates the development of growth models with a capacity for simulating a wide range of forest conditions while producing outputs useful for economic analyses. We calibrated the gap model ZELIG to simulate stand-level forest development in the Oregon Coast Range as part of a landscape-scale assessment of different forest management strategies. Our goal was to incorporate the predictive ability of an empirical model with the flexibility of a forest succession model. We emphasized the development of commercial-aged stands of Douglas-fir, the dominant tree species in the study area and primary source of timber. In addition, we judged that the ecological approach of ZELIG would be robust to the variety of other forest conditions and practices encountered in the Coast Range, including mixed-species stands, small-scale gap formation, innovative silvicultural methods, and reserve areas where forests grow unmanaged for long periods of time. We parameterized the model to distinguish forest development among two ecoregions, three forest types and two site productivity classes using three data sources: chronosequences of forest inventory data, long-term research data, and simulations from an empirical growth-and-yield model. The calibrated model was tested with independent, long-term measurements from 11 Douglas-fir plots (6 unthinned, 5 thinned), 3 spruce-hemlock plots, and 1 red alder plot. ZELIG closely approximated developmental trajectories of basal area and large trees in the Douglas-fir plots. Differences between simulated and observed conifer basal area for these plots ranged from -2.6 to 2.4 m2/ha; differences in the number of trees/ha ???50 cm dbh ranged from -8.8 to 7.3 tph. Achieving these results required the use of a diameter-growth multiplier, suggesting some underlying constraints on tree growth such as the temperature response function. ZELIG also tended to overestimate regeneration of shade-tolerant trees and underestimate total tree density (i.e., higher rates of tree mortality). However, comparisons with the chronosequences of forest inventory data indicated that the simulated data are within the range of variability observed in the Coast Range. Further exploration and improvement of ZELIG is warranted in three key areas: (1) modeling rapid rates of conifer tree growth without the need for a diameter-growth multiplier; (2) understanding and remedying rates of tree mortality that were higher than those observed in the independent data; and (3) improving the tree regeneration module to account for competition with understory vegetation. ?? 2008 Elsevier B.V.

Forest Ecology and Management↗

Fire regimes of quaking aspen in the Mountain West

Quaking aspen (Populus tremuloides Michx.) is the most widespread tree species in North America, and it is found throughout much of the Mountain West (MW) across a broad range of bioclimatic regions. Aspen typically regenerates asexually and prolifically after fire, and due to its seral status in many western conifer forests, aspen is often considered dependent upon disturbance for persistence. In many landscapes, historical evidence for post-fire aspen establishment is clear, and following extended fire-free periods senescing or declining aspen overstories sometimes lack adequate regeneration and are succeeding to conifers. However, aspen also forms relatively stable stands that contain little or no evidence of historical fire. In fact, aspen woodlands range from highly fire-dependent, seral communities to relatively stable, self-replacing, non-seral communities that do not require fire for persistence. Given the broad geographic distribution of aspen, fire regimes in these forests likely co-vary spatially with changing community composition, landscape setting, and climate, and temporally with land use and climate – but relatively few studies have explicitly focused on these important spatiotemporal variations. Here we reviewed the literature to summarize aspen fire regimes in the western US and highlight knowledge gaps. We found that only about one-fourth of the 46 research papers assessed for this review could be considered fire history studies (in which mean fire intervals were calculated), and all but one of these were based primarily on data from fire-scarred conifers. Nearly half of the studies reported at least some evidence of persistent aspen in the absence of fire. We also found that large portions of the MW have had little or no aspen fire history research. As a result of this review, we put forth a classification framework for aspen that is defined by key fire regime parameters (fire severity and probability), and that reflects underlying biophysical settings and correlated aspen functional types. We propose the following aspen fire regime types: (1) fire-independent, stable aspen; (2) fire-influenced, stable aspen; (3) fire-dependent, seral, conifer-aspen mix; (4) fire-dependent, seral, montane aspen-conifer; and (5) fire-dependent, seral, subalpine aspen-conifer. Closing research gaps and validating our proposed aspen fire regime classification will likely require additional site-specific research, enhanced dendrochronology techniques, charcoal and pollen record analysis, spatially-explicit modeling, and other techniques. We hope to encourage development of site-appropriate disturbance ecology characterizations, in order to aid efforts to manage and restore aspen communities and to diagnose key factors contributing to changes in aspen.

Forest Ecology and Management↗

Wetland fire scar monitoring and analysis using archival Landsat data for the Everglades

The ability to document the frequency, extent, and severity of fires in wetlands, as well as the dynamics of post-fire wetland land cover, informs fire and wetland science, resource management, and ecosystem protection. Available information on Everglades burn history has been based on field data collection methods that evolved through time and differ by land management unit. Our objectives were to (1) design and test broadly applicable and repeatable metrics of not only fire scar delineation but also post-fire land cover dynamics through exhaustive use of the Landsat satellite data archives, and then (2) explore how those metrics relate to various hydrologic and anthropogenic factors that may influence post-fire land cover dynamics. Visual interpretation of every Landsat scene collected over the study region during the study time frame produced a new, detailed database of burn scars greater than 1.6 ha in size in the Water Conservation Areas and post-fire land cover dynamics for Everglades National Park fires greater than 1.6 ha in area. Median burn areas were compared across several landscape units of the Greater Everglades and found to differ as a function of administrative unit and fire history. Some burned areas transitioned to open water, exhibiting water depths and dynamics that support transition mechanisms proposed in the literature. Classification tree techniques showed that time to green-up and return to pre-burn character were largely explained by fire management practices and hydrology. Broadly applicable as they use data from the global, nearly 30-year-old Landsat archive, these methods for documenting wetland burn extent and post-fire land cover change enable cost-effective collection of new data on wetland fire ecology and independent assessment of fire management practice effectiveness.

Florida↗

Otters, Marine

The otters (Mustelidae; Lutrinae) provide an exceptional perspective into the evolution of marine living by mammals. Most extant marine mammals (e.g. the cetaceans, pinnipeds, and sirenians) have been so highly modified by long periods of selection for life in the sea that they bear little resemblance to their terrestrial ancestors. Marine otters, in contrast, are more recent expatriates from freshwater habitats and some species still live in both environments. Contrasts among species within the otters, and among the otters, terrestrial mammals, and the more highly adapted pinnipeds and cetaceans provide powerful insights into mammalian adaptations to life in the sea (Estes, 1989). Among the marine mammals, sea otters ( Enhydra lutris , Fig. 1) provide the clearest understanding of consumer-induced effects on ecosystem function. This is due in part to opportunities provided by history and in part to the relative ease with which shallow coastal systems where sea otters live can be observed and studied. Although more difficult to study than sea otters, other otter species reveal the connectivity among the marine, freshwater, and terrestrial systems. These three qualities of the otters – their comparative biology, their role as predators, and their role as agents of ecosystem connectivity – are what make them interesting to marine mammalogy. The following account provides a broad overview of the comparative biology and ecology of the otters, with particular emphasis on those species or populations that live in the sea. Sea otters are features prominently, in part because they live exclusively in the sea whereas other otters have obligate associations with freshwater and terrestrial environments (Kenyon, 1969; Riedman and Estes, 1990).

Book chapter↗

Interactions of microhabitat and time control grassland bacterial and fungal composition

Dryland grasslands are vast and globally important and, as in all terrestrial ecosystems, soil microbial communities play fundamental roles in regulating dryland ecosystem function. A typical characteristic of drylands is the spatial mosaic of vascular plant cover surrounded by interspace soils, where biological soil crusts (biocrusts)—a complex community of organisms including bacteria, fungi, algae, mosses, and lichens—are common. The implications of this heterogeneity, where plants and biocrust cover co-occur, are often explored in the context of soil fertility and hydrology, but rarely has the impact of these multiple microhabitat types been simultaneously explored to determine the influence on bacterial and fungal communities, key biological players in these ecosystems. Further, our understanding of the temporal dynamics of bacterial and fungal communities in grasslands, and of how these dynamics depend on the microhabitat within the ecosystem, is notably poor. Here we used a temporally and spatially explicit approach to assess bacterial and fungal communities in a grassland on the Colorado Plateau, and to link variation in these communities to edaphic characteristics. We found that microhabitat (e.g., vascular plant rhizosphere, biocrust, and below biocrust) was the strongest driver of differences in bacterial and fungal community richness, diversity, and composition. Microhabitat type also significantly mediated the impact of temporal change in shaping community composition. Taken together, 29% of the variation in bacterial community composition could be explained by microhabitat, date, and microhabitat-by-date interactions, while only 11% of the variation in fungal community composition could be explained by the same factors, suggesting important differences in community assembly processes. Soil microbial communities dictate myriad critical ecosystem functions, thus understanding the factors that control their compostition is crucial to considering and forecasting how terrestrial ecosystems work. Overall, this case study provides insights for future studies on the spatial and temporal dynamics of bacterial and fungal communities in dryland grasslands.

Frontiers in Ecology and Evolution↗

Stratifying ocean sampling globally and with depth to account for environmental variability

With increasing depth, the ocean is less sampled for physical, chemical and biological variables. Using the Global Marine Environmental Datasets (GMED) and Ecological Marine Units (EMUs) , we show that spatial variation in environmental variables decreases with depth. This is also the case over temporal scales because seasonal change, surface weather conditions, and biological activity are highest in shallow depths. A stratified sampling approach to ocean sampling is therefore proposed whereby deeper environments, both pelagic and benthic, would be sampled with relatively lower spatial and temporal resolutions. Sampling should combine measurements of physical and chemical parameters with biological species distributions, even though species identification is difficult to automate. Species distribution data are essential to infer ecosystem structure and function from environmental data. We conclude that a globally comprehensive, stratification-based ocean sampling program would be both scientifically justifiable and cost-effective.

Scientific Reports↗

American pikas (Ochotona princeps) in northwestern Nevada: A newly discovered population at a low-elevation site

The central tenet of island biogeography theory - that species assemblages on islands are functions of island area, isolation from mainlands, and vicariance - has been altered by the demonstrable effects that rapid climate change is imposing on insular faunas, at least in isolated mountaintops. Although populations of American pikas (Ochotona princeps) continue to suffer extirpations, and although the lower bounds of the pika's elevational distribution are shifting upslope across the Great Basin, we report here on the new discovery of a low-elevation population of pikas in a mountain range from which they had not been reported previously. This discovery, particularly in the context of relatively rapid ecological change, highlights the importance of seeking out original sources of information and performing spatially extensive fieldwork. Results presented here further illustrate that although thermal influences appear to be the single strongest determinant of pika distribution currently, such influences interact with a number of other factors to determine persistence.

Western North American Naturalist↗

Coupled arsenotrophy in a hot spring photosynthetic biofilm at Mono Lake, California

Red-pigmented biofilms grow on rock and cobble surfaces present in anoxic hot springs located on Paoha Island in Mono Lake. The bacterial community was dominated (∼ 85% of 16S rRNA gene clones) by sequences from the photosynthetic Ectothiorhodospira genus. Scraped biofilm materials incubated under anoxic conditions rapidly oxidized As(III) to As(V) in the light via anoxygenic photosynthesis but could also readily reduce As(V) to As(III) in the dark at comparable rates. Back-labeling experiments with 73 As(V) demonstrated that reduction to 73 As(III) also occurred in the light, thereby illustrating the cooccurrence of these two anaerobic processes as an example of closely coupled arsenotrophy. Oxic biofilms also oxidized As(III) to As(V). Biofilms incubated with [ 14 C]acetate oxidized the radiolabel to 14 CO 2 in the light but not the dark, indicating a capacity for photoheterotrophy but not chemoheterotrophy. Anoxic, dark-incubated samples demonstrated As(V) reduction linked to additions of hydrogen or sulfide but not acetate. Chemoautotrophy linked to As(V) as measured by dark fixation of [ 14 C]bicarbonate into cell material was stimulated by either H 2 or HS − . Functional genes for the arsenate respiratory reductase ( arrA ) and arsenic resistance ( arsB ) were detected in sequenced amplicons of extracted DNA, with about half of the arrA sequences closely related (∼98% translated amino acid identity) to those from the family Ectothiorhodospiraceae . Surprisingly, no authentic PCR products for arsenite oxidase ( aoxB ) were obtained, despite observing aerobic arsenite oxidation activity. Collectively, these results demonstrate close linkages of these arsenic redox processes occurring within these biofilms. Oxyanions of the group 15 element arsenic, arsenate [As(V)] and arsenite [As(III)], have been known for millennia to be potent poisons. Despite its well-established toxicity to life, the phenomenon of arsenic resistance was discovered whereby some microorganisms maintain an otherwise “normal” existence in the presence of high concentrations of As(V) or As(III) (17, 29, 31). More recently it has become recognized that certain representatives from the bacterial and archaeal domains can actually exploit the electrochemical potential of the As(V)/As(III) redox couple (+130 mV) to gain energy for growth. This can be achieved either by employing As(III) as an autotrophic electron donor or by using As(V) as a respiratory electron acceptor (18, 21, 34). The latter phenomenon, although most commonly associated with chemoheterotrophy, can also employ inorganic substances like sulfide or H 2 . Indeed, As(V)-respiring anaerobes displaying a capacity for chemoautotrophy with these electron donors have been isolated and described (5, 7, 16). We recently reported that photoautotrophy is supported by As(III) in anoxic biofilms located in hot springs on Paoha Island in Mono Lake, CA (15). This process represented a novel means of As(III) oxidation achieved via anoxygenic photosynthesis occurring in certain photosynthetic bacteria (i.e., Ectothiorhodospira ) and possibly within some cyanobacteria as well (e.g., “ Oscillatoria ”). Whether or not a microbial habitat is overtly oxic or anoxic, or temporally shifts between these two states over a diel cycle, critical energy linkages between aerobes and anaerobes have long been known for the biogeochemical cycles of key elements, such as sulfur, iron, and nitrogen. Most prominently studied is the case of nitrogen, whereby an ecological coupling exists between the processes of nitrification and denitrification (9, 10, 28). The former process provides energy to aerobic nitrifiers, while the latter process consumes the nitrate produced by this reaction, thereby meeting the energy needs of the denitrifiers. For arsenic, the detection of both As(III) oxidation and As(V) reduction in oxic and anoxic incubations of freshly collected periphyton suggested that an analogous coupled process may also occur for this element (12). Similarly, several uncontaminated soils in Japan displayed a capacity for either As(V) reduction or As(III) oxidation upon arsenic oxyanion amendment and whether they were incubated under oxic or anoxic conditions (39). A defined coculture consisting of an aerobic As(III) oxidizer (strain OL1) and an anaerobic As(V) respirer (strain Y5) was shown to function in this fashion under manipulated laboratory conditions of oxygen tension (26). We pursued the phenomenon of coupled arsenic metabolism further by using materials collected from the hot spring biofilms in Mono Lake, but we focused on examination of the cycling of arsenic under anoxic conditions. In this paper we report results obtained by manipulated incubations of red-pigmented biofilms found in the hot springs of Paoha Island. Preliminary community characterizations of these biofilms show that they are dominated by B acteria from the genus Ectothiorhodospira but also harbor an assemblage of Archaea related to the Halobacteriacaea . Incubation results have demonstrated the presence of the following arsenic metabolic activities: respiratory As(V) reduction, photosynthetic anaerobic As(III) oxidation, and aerobic As(III) oxidation, along with the ecophysiological conditions under which they occur. Surprisingly, we were unable to obtain authentic PCR products for arsenite oxidase genes ( aoxB ), despite observing aerobic As(III) oxidation activity. These biofilms serve as a model system for how anaerobic cycling of arsenic can be sustained with oxidation of As(III) by anoxygenic photosynthesis coupled to regeneration of this electron donor via dissimilatory As(V) reduction. The significance that such a light-driven anaerobic ecosystem may have played in the Archean Earth is discussed.

California↗

Feeding habits and ecological implications of the invasive Flathead Catfish in the Susquehanna River basin, Pennsylvania

Objective Flathead Catfish Pylodictis olivaris are a widespread aquatic invasive species within the United States and a recent invader in the Susquehanna River basin, Pennsylvania. Flathead Catfish are piscivores known to consume native and recreationally important fish species. In the mid-Atlantic United States, it is unknown how this invader is impacting food webs and which species may be at greatest predation risk. To address this knowledge gap, we DNA barcoded stomach contents collected from Flathead Catfish to identify prey species and elucidate potential predatory impacts of Flathead Catfish in the Susquehanna River. Methods We used a Bayesian hierarchical multivariate probit model to investigate if the probability of prey species occurrence in the diets of Flathead Catfish varied seasonally or was a function of Flathead Catfish length. Result A total of 576 Flathead Catfish were collected during 2020–2021, with 241 individuals having recoverable stomach contents. In all, we identified 47 different prey species. The most common prey species were rusty crayfish Faxonius rusticus , Margined Madtom Noturus insignis , and shiners Notropis spp . While frequency of occurrence of prey species differed across Flathead Catfish length classes (<300 mm, 301–600 mm, 601–900 mm TL), rusty crayfish were commonly found (33.7–44.0% of diets) in stomachs of all size-classes. Conclusion We found that Flathead Catfish length and seasonality did influence occurrence probability differentially for several prey species. For example, Channel Catfish Ictalurus punctatus were more likely to appear in shorter Flathead Catfish while Smallmouth Bass Micropterus dolomieu appeared in larger Flathead Catfish. We demonstrate significant variation in Flathead Catfish predation, increasing our understanding of predator–prey dynamics, which is necessary to better manage and identify future impacts to aquatic communities in the Susquehanna River basin.

Pennsylvania↗

Coastal vegetation responses to large dam removal on the Elwha River

Introduction: Large dam removals provide a restoration opportunity for shrinking coastal wetland habitats. Dam removal can increase sediment delivery to sediment-starved river deltas and estuaries by restoring natural sediment transport and mobilizing reservoir-impounded sediment. However, rapid mobilization of massive quantities of sediment stored behind large dams also constitutes a major ecological perturbation. Information is lacking on coastal habitat responses to sediment pulses of this magnitude. Methods: Removal of two large dams along the Elwha River (Washington, USA) in 2011–2014 released ~20.5 Mt of impounded sediment, ~5.4 Mt of which were deposited in the delta and estuary (hereafter, delta). We used time series of aerial imagery, digital elevation models, and vegetation field sampling to examine plant community responses to this sediment pulse across seven years during and after dam removal. Results: Between 2011 and 2018, the Elwha River delta increased by ~26.8 ha. Vegetation colonized ~16.4 ha of new surfaces, with mixed pioneer vegetation on supratidal beach, river bars, and river mouth bars and emergent marsh vegetation in intertidal aquatic habitats. Colonization occurred on surfaces that were higher and more stable in elevation and farther from the shoreline. Compared to established delta plant communities, vegetation on new surfaces had lower cover of dominant species and functional groups, with very low woody cover, and lower graminoid cover than dunegrass and emergent marsh communities. Over time following surface stabilization, however, vegetation on new surfaces increased in species richness, cover, and similarity to established communities. By 2018, ~1.0 ha of vegetation on new surfaces had developed into dunegrass or willow–alder communities and ~5.9 ha had developed into emergent marsh. At the same time, dam removal had few discernible effects on established delta plant communities. Discussion: Together, these results suggest that rapid sediment mobilization during large dam removal has potential to expand coastal wetland habitat without negatively affecting established plant communities. However, as sediment loads declined in 2016–2018, new delta surfaces decreased by ~4.5 ha, and ~1.6 ha of new vegetation reverted to no vegetation. Long-term persistence of the expanded coastal habitat will depend on ongoing erosional and depositional processes under the restored natural sediment regime.

Washington↗

Expansion trends and impacts of Phragmites australis on the Louisiana Gulf Coast

Invasive plant species pose substantial threats to ecosystem integrity by disrupting ecosystem processes, reducing biodiversity, and complicating restoration and management efforts. Non-native lineages of Phragmites australis are invasive in wetlands across parts of North America, causing declines in the diversity of native wetland plants and disrupting biogeochemical cycles. Despite recognition of these effects, important knowledge gaps remain regarding the spatiotemporal dynamics, environmental drivers, and consequences of Phragmites expansion for native communities. Here, we examined long-term data from the Louisiana Coastwide Reference Monitoring System (CRMS), collected from 2006 to 2023 and spanning 390 sites across nine basins, to quantify basin-specific Phragmites cover trajectories and evaluate their associations with co-occurring native plant cover and soil properties. Louisiana supports both long-established noninvasive and (since ~2000) invasive European P. australis lineages, but CRMS cannot distinguish them; thus, our basin-level trajectories reflect species-level cover dynamics that may integrate lineage-specific turnover. Phragmites dynamics varied markedly among basins over the study period: Phragmites cover decreased in the Mississippi River Delta (initially >25%), whereas the Calcasieu-Sabine, Mermentau, Teche-Vermilion, and Terrebonne basins, each starting with <5%, exhibited positive expansion trends. The remaining four basins maintained low and stable Phragmites cover (<5%) over the study period. These distinct basin-level trajectories may reflect basin-to-basin differences in a hydrogeomorphic setting and associated sediment and nutrient inputs. In basins with positive expansion trends, Phragmites cover was associated with decreases in native plant cover. Overall, Phragmites expansion was positively associated with higher soil nutrients, lower pH, and higher salinity, highlighting key environmental factors that could inform targeted management to prevent or mitigate its expansion. Although Phragmites cover remains low in most basins (<10%), expansion in several basins suggests the value of basin-specific early-warning monitoring to maintain native plant cover and associated ecosystem functions. Our two-step framework offers a transferable monitoring template that integrates Phragmites cover trends (expanding/stable/declining), concurrently measured native plant cover, and key soil and pore-water indicators to flag emerging hotspots and prioritize adaptive management in other estuarine and deltaic systems.

Louisiana↗