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USGS2000

Sources and haloacetic acid/trihalomethane formation potentials of aquatic humic substances in the Wakarusa River and Clinton Lake near Lawrence, Kansas

Gram quantities of aquatic humic substances (AHS) were extracted from the Wakarusa River−Clinton Lake Reservoir system, near Lawrence, KS, to support nuclear magnetic resonance (NMR) experimental studies, report concentrations of dissolved organic carbon (DOC) and AHS, define sources of the AHS, and determine if the AHS yield sufficient quantities of haloacetic acids (HAA5) and trihalomethanes (THM4) that exceed U.S. Environmental Protection Agency (EPA) Maximum Contaminant Levels (MCL) in drinking water. AHS from the Wakarusa River and Clinton Lake originated from riparian forest vegetation, reflected respective effects of soil organic matter and aquatic algal/bacterial sources, and bore evidence of biological degradation and photodegradation. AHS from the Wakarusa River showed the effect of terrestrial sources, whereas Clinton Lake humic acid also reflected aquatic algal/bacterial sources. Greater amounts of carbon attributable to tannin-derived chemical structures may correspond with higher HAA5 and THM4 yields for Clinton Lake fulvic acid. Prior to appreciable leaf-fall from deciduous trees, the combined (humic and fulvic acid) THM4 formation potentials for the Wakarusa River approached the proposed EPA THM4 Stage I MCL of 80 μg/L, and the combined THM4 formation potential for Clinton Lake slightly exceeded the proposed THM4 Stage II MCL of 40 μg/L. Finally, AHS from Clinton Lake could account for most (>70%) of the THM4 concentrations in finished water from the Clinton Lake Water Treatment Plant based on September 23, 1996, THM4 results.

Environmental Science & Technology↗

USGS2007

U.S. Geological Survey Scientific Activities in the Exploration of Antarctica: Introduction to Antarctica (Including USGS Field Personnel: 1946-59)

INTRODUCTION Antarctica is the planet's fifth largest continent [13.2 million km2 (5.1 million mi2)]; it contains the Earth's largest (of two) remaining ice sheets; it is considered to be one of the most important scientific laboratories on Earth. This report is the introduction to a series that covers 60 years of U.S. Geological Survey (USGS) scientific activity in Antarctica. It will concentrate primarily on three major topics: 1) a brief chronological record of the historical search, discovery, and exploration of the southern continent by humans; 2) early USGS scientific activities in Antarctica, listing expeditions, projects, people and resulting professional publications for Operation Highjump, 1946-47; Operation Windmill, 1947-48; USS Atka Reconnaissance Cruise, 1954-55; and Operation Deep Freeze I, II, III, and IV, 1955-59, including IGY; 3) significant changes that have occurred in Antarctic exploration and research since World War II will be discussed at the end of this report. Subsequent Open-File Reports will provide a year-by-year documentation of USGS scientific activities and accomplishments in Antarctica beginning with the post-IGY, 1959-60 research team. One Open-File Report is planned to be written for each field-based season. For an example of the series format, see Open-File Reports 2006-1113 (Meunier, 2007a) and 2006-1114 (Meunier, 2007b). This report is a companion document to Open-File Report 2006-1116 (Meunier, 2007c). The USGS mapping and science programs in Antarctica are among the longest continuously funded projects in the United States Antarctic Program (USAP). The 2005-06 field season is the 56th consecutive U.S. expedition in which USGS scientists have been participants, starting in 1946. USGS and the National Science Foundation (NSF) cooperation began with the establishment by NSF of the U.S. Antarctic (Research) Program [USA(R)P] in 1958-59 under Operation Deep Freeze IV (DF IV) and was given the responsibility for the principal coordination and management of all U.S. scientific activities in Antarctica in Deep Freeze 60 (DF 60) (1959-60). Financial support from NSF, mostly in the form of Memorandum of Understandings (MOUs) and Cooperative Agreements, extends back to this period and can be attributed to the need for accurate geologic, geophysical, and topographic base maps of specific field areas or regions where NSF-funded science projects were planned. The epoch of Antarctic exploration during the IGY was driven by science and, in a spirit of peaceful cooperation, the international scientific community wanted to limit military activities on the continent to logistical support (Meunier, 1979 [2007], p. 38). The USGS, a Federal civilian science agency in the Department of the Interior, has, since its founding in 1879, carried out numerous field-based national (and some international) programs in biology, geology, geophysics, hydrology, and mapping. Therefore, the USGS was the obvious choice for these tasks, because it already had a professional staff of experienced mapmakers, scientists, and program managers with the foresight, dedication, and understanding of the need for accurate maps to support the science programs in Antarctica when asked to do so by the U.S. National Academy of Sciences. Public Laws 85-743 and 87-626, signed in August 1958, and in September 1962, respectively, authorized the Secretary, U.S. Department of the Interior, through the USGS, to support mapping and scientific work in Antarctica (Meunier, 1979 [2007], appendix A). Open-File Report 2006-1116 includes scanned facsimiles of postal cachets. It has become an international practice to create postal cachets to commemorate special events and projects in Antarctica. A cachet is defined as a seal or commemorative design printed or stamped on an envelope to mark a philatelic or special event. The inked impression illustrates to the scientist, historian, stamp collector, and general public the multidisciplinary science projects staffed by USGS and collaborating scientists during the field season. Since 1960, philatelic cachets have been created by team members for each USGS field season and, in most cases, these cachets depict the specific geographic areas and field season program objectives. The cachets become a convenient documentation of the people, projects, and geographic places of interest for that year. Because the cachets are representative of USGS activities, each year's cachet is included as a digital facsimile in that year's Open-File Report. In the 1980s, multiple USGS cachets were prepared each year, one for use by the winter team at Amundsen-Scott South Pole Station and the other for the project work areas of the austral summer field season programs.

Open-File Report↗

USGS2015

Biological and geochemical data along Indian Point, Vermilion Bay, Louisiana

Scientists from the U.S. Geological Survey, St. Petersburg Coastal and Marine Science Center collected shallow sediment cores and surface samples from a coastal salt marsh environment next to Vermilion Bay in southwest Louisiana in January 2013. The sampling was part of a larger USGS study to gather data for assessing environmental changes over the past 150 years. The objective of the study was to expand upon the historical context of sea level and storms affecting coastal systems and how these systems might change under persistent or varying conditions. The data from this report add to a regional environmental change database that aids with the continuing effort to understand the evolution of coastal systems. This report serves as an archive for sedimentological, radiochemical, and microbiological data derived from the sediment cores. Data are available for January 2013. Downloadable data are available as Excel spreadsheets and as JPEG files. Additional files include ArcGIS shapefiles of the sampling sites, detailed results of sediment analyses, and formal Federal Geographic Data Committee metadata. Acknowledgments The authors thank Nancy DeWitt, B.J. Reynolds, Christopher Reich (USGS, St. Petersburg Coastal and Marine Science Center), for help with sample collection and processing; Michael Ball, Sarai Piazza, and Gregory Steyer (USGS, Coastal Restoration Assessment Branch) for assistance accessing CRMS Site 541; and Darrell Anders and Phillip Turnipseed (USGS National Wetlands Research Center) for technical support while in the field. We would also like to thank Caitlyn Reynolds and Nicholas Zaremba for their pre-release commentary and peer review. Information Statement This publication was prepared by an agency of the United States Government. Although these data were processed successfully on a computer system at the U.S. Geological Survey, no warranty expressed or implied is made regarding the display or utility of the data on any other system, or for general or scientific purposes, nor shall the act of distribution imply any such warranty. The U.S. Geological Survey shall not be held liable for improper or incorrect use of the data described and (or) contained herein. Reference herein to any specific commercial product, process, or service by trade name, trademark, manufacturer, or otherwise does not constitute or imply its endorsement, recommendation, or favoring by the United States Government or any agency

Louisiana↗

USGS2012

Developing accurate survey methods for estimating population sizes and trends of the critically endangered Nihoa Millerbird and Nihoa Finch.

This report describes the results of a comparative study of bird survey methods undertaken for the purpose of improving assessments of the conservation status for the two endemic passerines on the Island of Nihoa—Nihoa Millerbird (Sylviidae: Acrocephalus familiaris kingi ) and Nihoa Finch (Fringilidae: Telespiza ultima ; also referred herein as millerbird and finch)—both listed as endangered under the Federal Endangered Species Act (ESA) and Hawai`i Revised Statutes 195D. The current survey protocol, implemented since 1967, has produced a highly variable range of counts for both the millerbird and finch, making difficult assessments of population size and trend. This report details the analyses of bird survey data collected in 2010 and 2011 in which three survey methods were compared―strip-transect, line-transect, and point-transect sampling―and provides recommendations for improved survey methods and protocols. Funding for this research was provided through a Science Support Partnership grant sponsored jointly by the U.S. Geological Survey (USGS) and the U.S. Fish and Wildlife Service (USFWS). Point-transect surveys indicated that millerbirds were more abundant than shown by the striptransect method, and were estimated at 802 birds in 2010 (95%CI = 652 – 964) and 704 birds in 2011 (95%CI = 579 – 837). Point-transect surveys yielded population estimates with improved precision which will permit trends to be detected in shorter time periods and with greater statistical power than is available from strip-transect survey methods. Mean finch population estimates and associated uncertainty were not markedly different among the three survey methods, but the performance of models used to estimate density and population size are expected to improve as the data from additional surveys are incorporated. Using the pointtransect survey, the mean finch population size was estimated at 2,917 birds in 2010 (95%CI = 2,037 – 3,965) and 2,461 birds in 2011 (95%CI = 1,682 – 3,348). Preliminary testing of the line-transect method in 2011 showed that it would not generate sufficient detections to effectively model bird density, and consequently, relatively precise population size estimates. Both species were fairly evenly distributed across Nihoa and appear to occur in all or nearly all available habitat. The time expended and area traversed by observers was similar among survey methods; however, point-transect surveys do not require that observers walk a straight transect line, thereby allowing them to avoid culturally or biologically sensitive areas and minimize the adverse effects of recurrent travel to any particular area. In general, pointtransect surveys detect more birds than strip-survey methods, thereby improving precision and resulting population size and trend estimation. The method is also better suited for the steep and uneven terrain of Nihoa

Hawaii↗

USGS2013

U.S. Geological Survey core science systems strategy: Characterizing, synthesizing, and understanding the critical zone through a modular science framework

Executive Summary Core Science Systems is a new mission of the U.S. Geological Survey (USGS) that resulted from the 2007 Science Strategy, “Facing Tomorrow’s Challenges: U.S. Geological Survey Science in the Decade 2007–2017.” This report describes the Core Science Systems vision and outlines a strategy to facilitate integrated characterization and understanding of the complex Earth system. The vision and suggested actions are bold and far-reaching, describing a conceptual model and framework to enhance the ability of the USGS to bring its core strengths to bear on pressing societal problems through data integration and scientific synthesis across the breadth of science. The context of this report is inspired by a direction set forth in the 2007 Science Strategy. Specifically, ecosystem-based approaches provide the underpinnings for essentially all science themes that define the USGS. Every point on Earth falls within a specific ecosystem where data, other information assets, and the expertise of USGS and its many partners can be employed to quantitatively understand how that ecosystem functions and how it responds to natural and anthropogenic disturbances. Every benefit society obtains from the planet— food, water, raw materials to build infrastructure, homes and automobiles, fuel to heat homes and cities, and many others— are derived from or affect ecosystems. The vision for Core Science Systems builds on core strengths of the USGS in characterizing and understanding complex Earth and biological systems through research, modeling, mapping, and the production of high quality data on the Nation’s natural resource infrastructure. Together, these research activities provide a foundation for ecosystem-based approaches through geologic mapping, topographic mapping, and biodiversity mapping. The vision describes a framework founded on these core mapping strengths that makes it easier for USGS scientists to discover critical information, share and publish results, and identify potential collaborations that transcend all USGS missions. The framework is designed to improve the efficiency of scientific work within USGS by establishing a means to preserve and recall data for future applications, organizing existing scientific knowledge and data to facilitate new use of older information, and establishing a future workflow that naturally integrates new data, applications, and other science products to make interdisciplinary research easier and more efficient. Given the increasing need for integrated data and interdisciplinary approaches to solve modern problems, leadership by the Core Science Systems mission will facilitate problem solving by all USGS missions in ways not formerly possible. The report lays out a strategy to achieve this vision through three goals with accompanying objectives and actions. The first goal builds on and enhances the strengths of the Core Science Systems mission in characterizing and understanding the Earth system from the geologic framework to the topographic characteristics of the land surface and biodiversity across the Nation. The second goal enhances and develops new strengths in computer and information science to make it easier for USGS scientists to discover data and models, share and publish results, and discover connections between scientific information and knowledge. The third goal brings additional focus to research and development methods to address complex issues affecting society that require integration of knowledge and new methods for synthesizing scientific information. Collectively, the report lays out a strategy to create a seamless connection between all USGS activities to accelerate and make USGS science more efficient by fully integrating disciplinary expertise within a new and evolving science paradigm for a changing world in the 21st century.

Circular↗

USGS2018

A new tool for studying waterfowl immune and metabolic responses: Molecular level analysis using kinome profiling

Here, we describe the design of an Anas‐ specific kinome peptide array that can be used to study the immunometabolic responses of mallard and American black duck to pathogens, contaminants, and environmental stress. The peptide arrays contain 2,642 unique phosphorylate‐able peptide sequences representing 1,900 proteins. These proteins cover a wide array of metabolic and immunological processes, and 758 Gene Ontology Biological processes are statistically significantly represented on the duck peptide array of those 164 contain the term “metabolic” and 25 “immune.” In addition, we conducted a comparison of mallard to American black duck at a genetic and proteomic level. Our results show a significant genomic and proteomic overlap between these two duck species, so that we have designed a cross‐reactive peptide array capable of studying both species. This is the first reported development of a wildlife species‐specific kinome peptide array.

Ecology and Evolution↗

USGS2018

Incorporating road crossing data into vehicle collision risk models for moose (Alces americanus) in Massachusetts, USA

Wildlife–vehicle collisions are a human safety issue and may negatively impact wildlife populations. Most wildlife–vehicle collision studies predict high-risk road segments using only collision data. However, these data lack biologically relevant information such as wildlife population densities and successful road-crossing locations. We overcome this shortcoming with a new method that combines successful road crossings with vehicle collision data, to identify road segments that have both high biological relevance and high risk. We used moose ( Alces americanus ) road-crossing locations from 20 moose collared with Global Positioning Systems as well as moose–vehicle collision (MVC) data in the state of Massachusetts, USA, to create multi-scale resource selection functions. We predicted the probability of moose road crossings and MVCs across the road network and combined these surfaces to identify road segments that met the dual criteria of having high biological relevance and high risk for MVCs. These road segments occurred mostly on larger roadways in natural areas and were surrounded by forests, wetlands, and a heterogenous mix of land cover types. We found MVCs resulted in the mortality of 3% of the moose population in Massachusetts annually. Although there have been only three human fatalities related to MVCs in Massachusetts since 2003, the human fatality rate was one of the highest reported in the literature. The rate of MVCs relative to the size of the moose population and the risk to human safety suggest a need for road mitigation measures, such as fencing, animal detection systems, and large mammal-crossing structures on roadways in Massachusetts.

Massachusetts↗

USGS2014

Abdominally implanted satellite transmitters affect reproduction and survival rather than migration of large shorebirds

Satellite telemetry has become a common technique to investigate avian life-histories, but whether such tagging will affect fitness is a critical unknown. In this study, we evaluate multi-year effects of implanted transmitters on migratory timing and reproductive performance in shorebirds. Shorebirds increasingly are recognized as good models in ecology and evolution. That many of them are of conservation concern adds to the research responsibilities. In May 2009, we captured 56 female Black-tailed Godwits Limosa limosa limosa during late incubation in The Netherlands. Of these, 15 birds were equipped with 26-g satellite transmitters with a percutaneous antenna (7.8 % ± 0.2 SD of body mass), surgically implanted in the coelom. We compared immediate nest survival, timing of migration, subsequent nest site fidelity and reproductive behaviour including egg laying with those of the remaining birds, a comparison group of 41 females. We found no effects on immediate nest survival. Fledging success and subsequent southward and northward migration patterns of the implanted birds conformed to the expectations, and arrival time on the breeding grounds in 2010–2012 did not differ from the comparison group. Compared with the comparison group, in the year after implantation, implanted birds were equally faithful to the nest site and showed equal territorial behaviour, but a paucity of behaviours indicating nests or clutches. In the 3 years after implantation, the yearly apparent survival of implanted birds was 16 % points lower. Despite intense searching, we found only three eggs of two implanted birds; all were deformed. A similarly deformed egg was reported in a similarly implanted Whimbrel Numenius phaeopus returning to breed in central Alaska. The presence in the body cavity of an object slightly smaller than a normal egg may thus lead to egg malformation and, likely, reduced egg viability. That the use of implanted satellite transmitters in these large shorebirds reduced nesting propensity and might also lead to fertility losses argues against the use of implanted transmitters for studies on breeding biology, and for a careful evaluation of the methodology in studies of migration.

Friesl↗

USGS2026

Assimilation efficiency of rainbow trout fed natural diets

Assimilation efficiency is a critical assumption of stable isotope mixing models and bioenergetics models, yet few studies examine how assimilation efficiency influences modeling inferences. We conducted laboratory experiments to determine rainbow trout ( Oncorhynchus mykiss ) assimilation efficiencies. Assimilation efficiency averaged 55.8% (SE ± 0.90) and 64.5% (SE ± 1.98) at the 10% and 25% ration levels, respectively, and did not differ significantly. Caloric energy egested in feces was not significantly different between ration levels. Caloric energy excreted in ammonia and urea was significantly different between the ration levels, with a higher amount at the 25% ration level. Absorption efficiency was significantly greater at a higher ration level. Percent energy egested in feces was significantly greater at lower ration levels. Percent energy excreted as ammonia and urea was high compared to previous studies and did not differ significantly by ration level. Our estimates of assimilation efficiency of rainbow trout (56% and 65%) were lower than some previously reported estimates, and our estimates of energy losses (feces and ammonia) were higher than some previous estimates. As knowledge of species-specific assimilation efficiencies increases, our ability to draw strong inferences and improve the accuracy of model predictions will improve.

Environmental Biology of Fishes↗

USGS2005

Fecundity of the American eel Anguilla rostrata at 45°N in Maine, U.S.A.

The northern portion of the geographic range of the American eel Anguilla rostrata may contribute a great proportion of the reproductive potential to this panmictic species because of apparent increases in average female size and female percentage with latitude. The regressions of fecundity on body length and on body weight of 63 female eels captured at about 45° N latitude on their spawning migration to the sea were log F= 1·2601 + 2·9642 log L and log F= 4·1646+0·9153 log W , where F is fecundity, L is total length (cm), and W is total weight (g). Length and weight each explained about 90% of the variation in fecundity. Estimates of fecundity from counts of aliquots of eggs ranged from 1·84 million to 19·92 million eggs for eels ranging in length from 45 to 113 cm, nearly the range of sizes of migrating females reported in the literature. Fecundities of the American eel were greater than reported in one study at about 37° N and greater than reported for the European eel, A. anguilla , shortfin eel, A. australis , and longfin eel, A. dieffenbachii . If a geographic cline in fecundity does exist in American eels, it is established anew each generation because the species forms a single panmictic population.

Journal of Fish Biology↗

USGS1985

[Book review] The birds of San Diego County

San Diego County, California is larger in area than 2 of the 50 states (combined), its geographic (and thus biological) diversity ranges from the seacoast across mountains of nearly 2,000 m elevation to extreme desert, it is the southwesternmost county of the contiguous U.S., and it is inhabited by dedicated birders whose observations have boosted the county list to more than 450 species. "The Birds of San Diego County" provides detailed information on the geographic, ecological, and temporal distribution and abundance of each of the 449 species of native birds reported in the county-for some, by subspecies. Maps of breeding distribution are presented for 129 of the 181 breeding species (of which 26 are considered to be extirpated or only occasional breeders). Ecological zones and terms of abundance are defined precisely, and the definitions are adhered to. Welcomely absent are long para- graphs of descriptive and generalized information.

The Auk↗

USGS2012

Science strategy for Core Science Systems in the U.S. Geological Survey, 2013-2023

Core Science Systems is a new mission of the U.S. Geological Survey (USGS) that grew out of the 2007 Science Strategy, “Facing Tomorrow’s Challenges: U.S. Geological Survey Science in the Decade 2007–2017.” This report describes the vision for this USGS mission and outlines a strategy for Core Science Systems to facilitate integrated characterization and understanding of the complex earth system. The vision and suggested actions are bold and far-reaching, describing a conceptual model and framework to enhance the ability of USGS to bring its core strengths to bear on pressing societal problems through data integration and scientific synthesis across the breadth of science. The context of this report is inspired by a direction set forth in the 2007 Science Strategy. Specifically, ecosystem-based approaches provide the underpinnings for essentially all science themes that define the USGS. Every point on earth falls within a specific ecosystem where data, other information assets, and the expertise of USGS and its many partners can be employed to quantitatively understand how that ecosystem functions and how it responds to natural and anthropogenic disturbances. Every benefit society obtains from the planet—food, water, raw materials to build infrastructure, homes and automobiles, fuel to heat homes and cities, and many others, are derived from or effect ecosystems. The vision for Core Science Systems builds on core strengths of the USGS in characterizing and understanding complex earth and biological systems through research, modeling, mapping, and the production of high quality data on the nation’s natural resource infrastructure. Together, these research activities provide a foundation for ecosystem-based approaches through geologic mapping, topographic mapping, and biodiversity mapping. The vision describes a framework founded on these core mapping strengths that makes it easier for USGS scientists to discover critical information, share and publish results, and identify potential collaborations that transcend all USGS missions. The framework is designed to improve the efficiency of scientific work within USGS by establishing a means to preserve and recall data for future applications, organizing existing scientific knowledge and data to facilitate new use of older information, and establishing a future workflow that naturally integrates new data, applications, and other science products to make it easier and more efficient to conduct interdisciplinary research over time. Given the increasing need for integrated data and interdisciplinary approaches to solve modern problems, leadership by the Core Science Systems mission will facilitate problem solving by all USGS missions in ways not formerly possible. The report lays out a strategy to achieve this vision through three goals with accompanying objectives and actions. The first goal builds on and enhances the strengths of the Core Science Systems mission in characterizing and understanding the earth system from the geologic framework to the topographic characteristics of the land surface and biodiversity across the nation. The second goal enhances and develops new strengths in computer and information science to make it easier for USGS scientists to discover data and models, share and publish results, and discover connections between scientific information and knowledge. The third goal brings additional focus to research and development methods to address complex issues affecting society that require integration of knowledge and new methods for synthesizing scientific information. Collectively, the report lays out a strategy to create a seamless connection between all USGS activities to accelerate and make USGS science more efficient by fully integrating disciplinary expertise within a new and evolving science paradigm for a changing world in the 21st century.

Open-File Report↗

USGS2025

Targeted quantitation of 6ppd-quinone in fish tissue samples with liquid chromatography-tandem mass spectrometry

The tire additive transformation product N -(1,3-dimethylbutyl)- N’ -phenyl- p -phenylenediamine-quinone (6PPD-quinone) has recently garnered global attention due to its acute toxicity to some salmonids, such as coho salmon ( Oncorhynchus kisutch ), and its ubiquitous presence in urban stormwater systems. In the present study, we developed and compared the extraction efficiency of two sample preparation methodologies for quantification of 6PPD-quinone among two fish tissue sample types that included fillet of smallmouth bass ( Micropterus dolomieu ) and whole-body samples of O. kisutch fry subjected to in vivo exposure tests with 6PPD-quinone. The two sample preparation methods tested included an accelerated solvent extraction (ASE) approach and a sonication extraction approach. Both sample preparation methods included identical purification steps for the crude sample extracts with enhanced matrix removal cartridges. The purified sample extracts were subjected to targeted analysis of 6PPD-quinone using ultra-performance liquid chromatography-tandem mass spectrometry (UPLC-MS/MS). The results showed that extractions made with the reported ASE method demonstrated significantly higher absolute recovery (80–96%) of the extracted internal standard, [ 13 C 6 ]-6PPD-quinone, than sonication-based extractions (74–80%) in both fish tissue sample types. The proposed ASE method shows acceptable limits of quantification (0.37–0.67 ng g −1 ), linearity (R 2 > 0.996), and repeatability (RSD ≤ 9%). This work advances research capabilities for investigations on the toxicokinetic processes of 6PPD-quinone in biological samples.

Environmental Toxicology and Chemistry↗

USGS2007

Measurements of slope current and environmental geochemistry near the western boundary of the Gulf of the Farallones National Marine Sanctuary

For nearly a decade, dredged material from San Francisco Bay has been deposited at the U.S. Environmental Protection Agency (EPA) Region IX designated disposal site on the continental slope west of the Farallon Islands. Over the past several years, annual disposal volumes have ranged from 136,170 m3 (61 barge loads) to 2,407,600 m3 (1,173 barge loads) (Ota, personal communication, 2000). The EPA has conducted extensive studies to evaluate the fate and effects of the disposed material (Abdelrhman, 1992; Tetra-Tech, 1992; SAIC, 1992). The EPA has also maintained a long-term monitoring program to collect hydrodynamic, sedimentary, chemical, and biological data that are used to determine whether the dredged material adversely affects the ecology of adjacent water bodies and whether it moves from the disposal site, especially into the Gulf of the Farallones National Marine Sanctuary. As part of this monitoring program, the U.S. Geological Survey (USGS) Coastal and Marine Geology Program (CMGP) deployed arrays of instruments on three moorings near the EPA disposal site from November 1997 to November 1998. This report describes the results and findings of this field monitoring experiment.

California↗

USGS1989

National Research Program of the Water Resources Division, U.S. Geological Survey: Fiscal Year 1988

The National Research Program (NRP) of the US Geological Survey 's Water Resources Division (WRD) had its beginnings in the late 1950 's when ' core research ' was added as a line item to the Congressional budget. Since that time, the NRP has grown to encompass a broad spectrum of scientific investigations. The sciences of hydrology, mathematics, chemistry, physics, ecology, biology, geology, and engineering are used to gain a fundamental understanding of the processes that affect the availability, movement, and quality of the Nation 's water resources. The NRP is located principally in Reston, VA, Denver, CO, and Menlo Park , CA. The NRP is subdivided into six disciplines as follows: (1) Ecology; (2) Geomorphology and Sediment Transport; (3) Groundwater Chemistry; (4) Groundwater Hydrology; (5) Surface Water Chemistry; and (6) Surface Water Hydrology. The report provides current information about the NRP on an annual basis. Organized by the six research disciplines, the volume contains a summary of the problem, objective, approach, and progress for each project that was active during fiscal year 1988.

Open-File Report↗

USGS2005

Geospatial decision support systems for societal decision making

While science provides reliable information to describe and understand the earth and its natural processes, it can contribute more. There are many important societal issues in which scientific information can play a critical role. Science can add greatly to policy and management decisions to minimize loss of life and property from natural and man-made disasters, to manage water, biological, energy, and mineral resources, and in general, to enhance and protect our quality of life. However, the link between science and decision-making is often complicated and imperfect. Technical language and methods surround scientific research and the dissemination of its results. Scientific investigations often are conducted under different conditions, with different spatial boundaries, and in different timeframes than those needed to support specific policy and societal decisions. Uncertainty is not uniformly reported in scientific investigations. If society does not know that data exist, what the data mean, where to use the data, or how to include uncertainty when a decision has to be made, then science gets left out -or misused- in a decision making process. This paper is about using Geospatial Decision Support Systems (GDSS) for quantitative policy analysis. Integrated natural -social science methods and tools in a Geographic Information System that respond to decision-making needs can be used to close the gap between science and society. The GDSS has been developed so that nonscientists can pose "what if" scenarios to evaluate hypothetical outcomes of policy and management choices. In this approach decision makers can evaluate the financial and geographic distribution of potential policy options and their societal implications. Actions, based on scientific information, can be taken to mitigate hazards, protect our air and water quality, preserve the planet's biodiversity, promote balanced land use planning, and judiciously exploit natural resources. Applications using the GDSS have demonstrated the benefits of utilizing science for policy decisions. Investment in science reduces decision-making uncertainty and reducing that uncertainty has economic value.

Boletin Geologico y Minero↗

USGS2006

Vascular Plant and Vertebrate Inventory of Saguaro National Park, Rincon Mountain District

Executive Summary This report summarizes the results of the first comprehensive inventory of plants and vertebrates at the Rincon Mountain District (RMD) of Saguaro National Park, Arizona. From 2001 to 2003 we surveyed for vascular plants and vertebrates (amphibians, reptiles, birds, and mammals) at the district to document the presence of species within its boundaries. Park staff also surveyed for medium and large mammals using infrared-triggered cameras from 1999 to 2005. This report summarizes the methods and results of these two efforts. Our spatial sampling design was ambitious and was one of the first of its kind in the region to colocate study sites for vegetation and vertebrates using a stratified random design. We also chose the location of some study sites non-randomly in areas that we thought would have the highest species richness. Because we used repeatable study designs and standardized field methods, these inventories can serve as the first step in a biological monitoring program for the district. We also provide an important overview of most previous survey efforts in the district. We use data from our inventory and other surveys to compile species lists and to assess inventory completeness. With the exception of plants, our survey effort was the most comprehensive ever undertaken in the district. We recorded a total of 801 plant and vertebrate species, including 50 species not previously found in the district (Table 1) of which five (all plants) are non-native species. Based on a review of our inventory and past research at the district, there have been a total of 1,479 species of plants and vertebrates found there. We believe inventories for all taxonomic groups are nearly complete. In particular, the plant, amphibian and reptile, and mammal species lists are the most complete of any comparably large natural area of the 'sky island' region of southern Arizona and adjacent Mexico. For each taxon-specific chapter we discuss patterns of species richness and environmental determinants of these patterns. For all groups except medium and large mammals, the low elevation stratum (<4,000 feet) contained the highest species richness, after accounting for differences in survey effort among strata. This is consistent with known patterns of species richness in the sky island mountain ranges. Using data on relative abundance for plants and birds, we were able to identify a number of distinct ecological communities, which were consistent with known patterns in the sky islands. Our review of species lists and park records reveals that the district has lost species, particularly plants and mammals, in the past few decades. Because of the district's close proximity to the rapidly growing city of Tucson, there are a number of development-related threats that could cause additional species loss or decline in abundance of some species. In particular, the increasing groundwater pumping near Rincon Creek, the most species-rich area in the park, is likely to impact the unique riparian vegetation and animals of that area. We discuss this and other demands on the ecological integrity of the district. We also recommend additional inventory, monitoring, and research studies.

Open-File Report↗

USGS2024

Wildland fire effects on sediment, salinity, and selenium yields in a basin underlain by Cretaceous marine shales near Rangely, Colorado

Understanding and quantifying soil erosion from rangelands is a high priority for land managers, especially in areas underlain by Cretaceous Mancos Shale, which is a natural source of sediment, salinity, and selenium to surface waters in many areas of western Colorado and eastern Utah. The purpose of this report is to present the results of a U.S. Geological Survey study that assessed sediment, salinity, and selenium yields after the Dead Dog wildfire (fire began June 11, 2017) in northwestern Colorado. Two methodologies were used to quantify erosion, with different data requirements and analytical complexity. The first approach was the use of a process-based erosion model, the Watershed Erosion Prediction Project, which uses inputs of climate, topography, vegetation, and soils data from existing datasets to predict erosion, making this approach easily extensible to other areas. The second approach required more complex data collection and was used to measure erosion and deposition by differencing digital elevation models created from uncrewed aerial vehicle imagery collected in 2016 (pre-fire) and 2021 (post-fire). Sediment, salinity, and selenium yields were calculated from the volumetric estimates of erosion from both methods, and a discussion of factors that may have contributed to overall findings, including vegetation, fire effects, and soil characteristics, is included. The two approaches yielded different outputs. Results from the Watershed Erosion Prediction Project model indicated that almost no erosion occurred after the Dead Dog fire. However, morphological changes in the study basin after the Dead Dog fire were visible in the pre- and post-fire imagery and measured in the digital elevation model differencing technique, with net erosion occurring in channel and landscape extents, though calculated erosion rates and salinity and selenium yields were relatively small. Visible and measured morphological changes consisted primarily of incision and deposition within stream channels and rill incision and expansion on steeper slopes. Widespread sheet erosion was not evident. Much of the new erosion originated within, and immediately below, previously vegetated areas that were then burned by the wildfire. Greater erosion rates and salinity and selenium yields were measured in the channel extent relative to the landscape extent. Calculated erosion rates ranged from 0.24 to 0.45 megagrams per hectare per year. These results indicate that the Dead Dog fire resulted in increased erosion in the study basin, yet these effects were relatively small based on the overall magnitude of modeled and measured erosion from the Watershed Erosion Prediction Project and the digital elevation model differencing technique. Minimal erosion in the basin is likely due to local site characteristics typical of soils derived from Mancos Shale, including the presence of robust physical crusts and biological soil crusts, and limitations of the methods based on data availability. Focusing uncrewed aerial vehicle flights on key areas (individual steep slopes, high-intensity burn areas, specific stream reaches) could likely increase understanding of erosional process with less effort and error than doing landscape-level flights.

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