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USGS2003

Hydrogeology of the unconsolidated sediments, water quality, and ground-water/surface-water exchanges in the Methow River Basin, Okanogan County, Washington

The U.S. Geological Survey, in cooperation with Okanogan County, investigated the hydrogeology of the unconsolidated sedimentary deposits in the Methow River Basin, the quality of surface and ground waters, and the exchanges between ground water and surface water. Alluvium (Qa) and glaciofluvial sediments (Qga) deposited during the Quaternary period constitute the primary aquifer in the Methow River Basin, which is used as a source of water for domestic and public-water supplies and for maintaining streamflow during seasonal dry periods. The sediments form a nearly continuous unit along the valley bottom from above the Lost River to the confluence of the Methow and Columbia Rivers, covering more than 45 square miles of the basin?s surface. There are no distinct units within the deposit that can be identified across or along the valley except for fragments of a possible lake bed near the town of Twisp. Ground-water levels in the unconsolidated aquifer are highest during the summer and lowest in the winter and early spring. Ground water and surface water, sampled during June and September 2001, generally were of high quality. Only two samples from domestic and municipal wells indicated the possibility of ground-water contamination from nitrate and arsenic concentrations. In both cases, potential contamination was isolated to an individual well. No trends in water quality were apparent when comparing the results of this investigation with previous studies. The flow of water between rivers and aquifers is important for regulating the availability of water resources for in-stream and out-of-stream uses in the Methow River Basin. Ground-water discharge from the unconsolidated aquifer to the Methow River from Lost River to Pateros ranged from an estimated 153,000 acre-ft in water year 2001 to 157,000 acre-ft in water year 2002. In contrast, ground-water discharge to the lower Twisp River from Newby Creek to near Twisp ranged from 4,700 acre-ft in water year 2001 to 9,200 acre-ft in water year 2002. The Methow and Twisp Rivers, among others in the basin, are major sources of recharge for the unconsolidated aquifer, particularly during high-flow periods in May and June. Aquifer recharge by both rivers increased with streamflow in water year 2002 compared to water year 2001 as indicated by daily losses of streamflow. Aquifer recharge by the Methow River from Lost River to Pateros was estimated to be 82,000 acre-ft in water year 2001 and 137,000 acre-ft in water year 2002. Aquifer recharge by the Twisp River from Newby Creek to near Twisp was estimated to be 2,000 acre-ft in water year 2001 and 6,400 acre-ft in water year 2002. Seepage from unlined irrigation canals also recharges the unconsolidated aquifer during the late spring and summer and may contribute as much 38,000 acre-ft annually to aquifer recharge in the basin. Some portion of this ground water returns to rivers as indicated by a seasonal increase in ground-water discharge in the Methow River from Winthrop to Twisp and in the lower Twisp River during late summer and early autumn. Although the increase is likely due primarily to irrigation canal seepage, however, fluvial recharge during the summer also may have contributed to the increase. The increased rate of ground-water discharge decays by January in both reaches.

Washington↗

USGS1992

Aquifer-test results, direction of ground-water flow, and 1984-90 annual ground-water pumpage for irrigation, lower Big Lost River Valley, Idaho

The study area (see index map of Idaho), part of the Big Lost River drainage basin, is at the northern side of the eastern Snake River Plain. The lower Big Lost River Valley extends from the confluence of Antelope Creek and the Big Lost River to about 4 mi south of Arco and encompasses about 145 mi 2 (see map showing water-level contours). The study area is about 18 mi long and, at its narrowest, 4 mi wide. Arco, Butte City, and Moore, with populations of 1,016, 59, and 190, respectively, in 1990, are the only incorporated towns. The entire study area, except the extreme northwestern part, is in Butte City. The study area boundary is where alluvium and colluvium pinch out and abut against the White Knob Mountains (chiefly undifferentiated sedimentary rock with lesser amounts of volcanic rock) on the west and the Lost River Range (chiefly sedimentary rock) on the east. Gravel and sand in the valley fill compose the main aquifer. The southern boundary is approximately where Big Lost River valley fill intercalates with or abuts against basalt of the Snake River Group. Spring ground-water levels and flow in the Big Lost River depend primarily on temperature and the amount and timing of precipitation within the entire drainage basin. Periods of abundant water supply and water shortages are, therefore, related to the amount of annual precipitation. Surface reservoir capacity in the valley (Mackay Reservoir, about 20 mi northwest of Moore) is only 20 percent of the average annual flow of the Big Lost River (Crosthwaite and others, 1970, p. 3). Stored surface water is generally unavailable for carryover from years of abundant water supply to help relieve drought conditions in subsequent years. Many farmers have drilled irrigation wells to supplement surface-water supplies and to increase irrigated acreage. Average annual flow of the Big Lost River below Mackay Reservoir near Mackay (gaging station 13127000, not shown) in water years 1905, 1913-14, and 1920-90 was about 224,600 acre-ft; average annual flow of the Big Lost River near Arco (gaging station 13132500; see map showing water-level contours) in water years 1947-61, 1967-80, and 1983-90 was about 79,000 acre-ft (Harenberg and others, 1991, p. 254-255). Moore Canal and East Side Ditch divert water from the Big Lost River at the Moore Diversion, 3 mi north of Moore (see map showing water-level contours) and supply water for irrigation near the margins of the valley. When water supply is average or greater, water in the Big Lost River flows through the study area and onto the Snake River Plain, where it evaporates or infiltrates into the Snake River Plain aquifer. When water supply is below average, water in the Big Lost River commonly does not reach Arco; rather, it is diverted for irrigation in the interior of the valley, evaporates, or infiltrates to the valley-fill aquifer. This report describes the results of a study by the U.S. Geological Survey, in cooperation with the Idaho Department of Water Resources, to collect hydrologic data needed to help address water-supply problems in the Big Lost River Valley. Work involved (1) field inventory of 81 wells, including 46 irrigation wells; (2) measurement of water levels in 154 wells in March 1991; (3) estimation of annual ground-water pumpage for irrigation from 1984 through 1990; and (4) analysis of results of an aquifer test conducted southwest of Moore. All data obtained during this study may be inspected at the U.S. Geological Survey, Idaho District office, Boise.

Idaho↗

USGS1997

Evaluation of streamflow traveltime and streamflow gains and losses along the lower Purgatoire River, southeastern Colorado, 1984-92

Traveltime and gains and losses within a stream are important basic characteristics of streamflow. The lower Purgatoire River flows more than 160 river miles from Trinidad to the Arkansas River near Las Animas. A better knowledge of streamflow traveltime and streamflow gains and losses along the lower Purgatoire River would enable more informed management decisions about the availability of water supplies for irrigation use in southeastern Colorado. In 1994-95, the U.S.\x11Geological Survey, in cooperation with the Purgatoire River Water Conservancy District and the Arkansas River Compact Administration, evaluated streamflow traveltime and estimated streamflow gains and losses using historical surface-water records. Traveltime analyses were used along the lower Purgatoire River to determine when streamflows would arrive at selected downstream sites. The substantial effects of diversions for irrigation and unmeasured return flows in the most upstream reach of the river prevented the tracking of streamflow through reach\x111. Therefore, the estimation of streamflow traveltime for the 60.6 miles of river downstream from Trinidad could not be made.Hourly streamflow data from 1990 through 1994 were used to estimate traveltimes of more than 30 streamflow events for about 100 miles of the lower Purgatoire River. In the middle reach of the river, the traveltime of streamflow for the 40.1\x11miles ranged from about 11 to about 47\x11hours, and in the lower reach of the river, traveltime for the 58.5 miles ranged from about 6 to about 61 hours.Traveltime in the river reaches generally increased as streamflow decreased, but also varied for a specific streamflow in both reaches. Streamflow gains and losses were estimated using daily streamflow data at the upstream and downstream sites, available tributary inflow data, and daily diversion data. Differences between surface-water inflows and surface-water outflows in a reach determined the quantity of water gained or lost. In the most upstream reach of the river near Trinidad, difficulties in establishing streamflow traveltimes prevented the estimation of streamflow gains or losses. From 1984 through 1992, more than 2,900 daily estimates of streamflow gains or losses were made for the last 100\x11miles of the lower Purgatoire River that indicated daily gains and losses in streamflow were common during all four seasons of the year. Although some large daily streamflow gains and losses were computed, most daily estimates indicated small gains and losses in streamflow. The daily median streamflow gain or loss for the middle reach of the river was close to zero during every season, whereas median values for the lower most reach of the river indicated a daily gain in streamflow during every season.

Water-Resources Investigations Report↗

USGS2000

Sources, instream transport, and trends of nitrogen, phosphorus, and sediment in the lower Tennessee River basin, 1980-96

In 1997, the U.S. Geological Survey (USGS) began an assessment of the lower Tennessee River Basin as part of the National Water-Quality Assessment Program. Existing nutrient and sediment data from 1980 to 1996 were compiled, screened, and interpreted to estimate watershed inputs from nutrient sources, provide a general description of the distribution and transport of nutrients and sediments in surface water, and evaluate trends in nutrient and sediment concentrations in the lower Tennessee (LTEN) River Basin. Nitrogen inputs from major sources varied widely among tributary basins in the LTEN River Basin. Point source wastewater discharges contributed between 0 and 0.61 tons per square mile per year [(tons/mi 2 )/yr]. Of the nonpoint sources of nitrogen for which inputs were estimated (atmospheric deposition, nitrogen fixation, fertilizer application, and livestock waste) livestock waste contributed the largest input in about two-thirds (7 out of 11) of the tributary basins, and fertilizer application contributed the largest input in the remaining 4 basins. Nitrogen input from fertilizer application was the most variable spatially among the nonpoint sources of nitrogen, ranging from 1.5 to 23 (tons/mi 2 )/yr. Atmospheric deposition estimates varied the least from basin to basin, ranging from 1.6 to 2.0 (tons/mi 2 )/yr. Estimates of nitrogen input from livestock waste ranged between 2.0 to 13 (tons/mi 2 )/yr. The percentage of the input from each of these nonpoint sources that entered the surface-water system is not known. Wastewater discharge contributed between 0 and 0.14 (ton/mi 2 )/yr of phosphorus to tributary basins. Livestock waste contributed most of the input in 8 out of the 11 basins, and fertilizer application contributed the most in the remaining 3 basins. Estimates of phosphorus input for fertilizer application ranged from 0.35 to 5.1 (tons/mi 2 )/yr and from 0.62 to 4.3 (tons/mi 2 )/yr from livestock waste. Reservoirs on the main stem of the Tennessee River and on the Duck and Elk Rivers affect nutrient transport because hydrodynamic conditions in the reservoirs promote assimilation by aquatic plants and deposition of particulate matter. Observed decreases in total nitrite plus nitrate and dissolved-orthophosphorus concentrations in reservoirs or at sites downstream of reservoirs during summer months were probably related to seasonality of plant growth. Nutrient and sediment data used to estimate annual instream loads and yields were compiled from various water-quality monitoring programs and represent the best available data in the LTEN River Basin, but these data have several characteristics that limit accuracy of load estimates. Many of the monitoring programs were not designed with the objective of annual load estimation, and data representing storm transport are, therefore, sparse; sampling and analytical methods varied through time and among the monitoring programs, hampering spatial and temporal comparisons. The load estimates computed from these data are useful for evaluating broad spatial patterns of instream load, and comparisons of instream load to inputs, but may not be sufficiently accurate for local-scale evaluations of water quality. Estimates of the mean annual instream load of total nitrogen entering (Chattanooga, Tenn.) and leaving (Paducah, Ky.) the LTEN River Basin were 29,000 and 60,000 tons per year (tons/yr), respectively. These estimates represent a gain of 31,000 tons/yr, on average, across the area (18,930 mi 2 ) between these inlet and outlet sites. The sum of the mean annual instream load from gaged tributaries to the main stem within the study unit was 14,000 tons/yr; however, this number cannot be directly compared with the gain between the inlet and outlet sites because (1) the gaged area represents only 30 percent of the total area and (2) the period of record at many tributary sites did not correspond with the period of record at the inlet or outlet sites. Estimates of mean annual instream load of total phosphorus at the inlet and outlet sites of the LTEN River Basin were 1,300 and 5,000 tons/yr, respectively, representing a gain of 3,700 tons/yr, on average, across the study unit. The sum of the gaged tributary load, representing only 28 percent of the area contributing to the main stem, was 4,300 tons/yr. Although this number cannot be closely compared with the gain throughout the study unit, for the same reasons given for total nitrogen, a general comparison suggests that the main stem of the Tennessee River and the tributary embayments along the main stem function as a sink for total phosphorus, removing a substantial amount from the water column through deposition or assimilation. The estimates of inputs can be compared and correlated with yields (area-normalized instream loads); significant correlations between estimates of inputs and yields might be useful as predictive tools for instream water quality where monitoring data are not available. Yields of nitrogen correlated moderately well with inputs from nonpoint sources, based on 1992 estimates. Nitrogen yield was highest [3.5 (tons/mi 2 )/yr] for Town Creek, for which the balance of nonpoint-source inputs to agricultural lands (fertilizer application plus nitrogen fixation plus livestock waste minus harvest) was also the highest [15 (tons/mi 2 )/yr]. Nitrogen yield was low [1.0 (tons/mi 2 )/yr] for the Buffalo River, for which the balance of agricultural nonpoint-source input was correspondingly low [3.2 (tons/mi 2 )/yr, the second lowest]. Correlation of wastewater discharge with yield was poor, and contrasted with the significant correlation between wastewater discharge and median nitrogen concentration during low streamflow. The poor correlation between wastewater discharge and annual yield was expected, however, as wastewater discharge is a small fraction compared with annual yield. In contrast with nitrogen, phosphorus yield did not correlate well with any estimated inputs or land-use types for the tributary basins. Phosphorus yield was highest [1.1 and 0.93 (tons/mi 2 )/yr] at two sites along the Duck River and at Elk River near Prospect [0.89 (ton/mi 2 )/yr]; however, estimates of inputs at these sites were in the middle of their respective ranges. The influence of the outcrop of phosphatic limestone formations of the brown-phosphate districts in the lower Duck and lower Elk River Basins might be responsible for the poor correlation between estimated inputs and yields of phosphorus. The outcrop pattern of these phosphatic limestones are an important factor to consider as regional boundaries are established for attainable, region-specific water-quality criteria for total phosphorus. Estimates of sediment input from cropland soil erosion in 1992 ranged from 51 to 540 (tons/mi 2 )/yr among the major hydrologic units in the LTEN River Basin. Information was not available to estimate this input for individual tributaries. Sediment yield estimates ranged from 65 to 263 (tons/mi 2 )/yr for the three tributary monitoring basins for which instream data were available, and from 17 to 26 (tons/mi 2 )/yr for the Tennessee River at South Pittsburg and at Pickwick Landing Dam, respectively. Lower sediment yields for the main stem sites compared with the tributary sites is probably due to sediment deposition in the main stem of the Tennessee River and tributary embayments along the main stem. Most of the significant trends in nutrient concentrations from about 1985 to about 1995 were decreasing trends, except for total nitrite plus nitrate, which increased at one site on the Elk River. The spatial distribution of decreasing trends of total nitrogen and total ammonia corresponds with the spatial variation among basins in wastewater loading rate. The time period of observed trends corresponds to the period of improvements in municipal treatment, thus decreases in wastewater effluent concentrations of nitrogen might be responsible for the decreasing trend in instream concentrations at these sites. Concentrations of total phosphorus did not decrease during this period at these sites, as might have been expected considering the reductions in wastewater input of phosphorus during this period.

Alabama, Georgia, Kentucky, Mississippi, Tennessee↗

USGS2023

Diverse portfolios: Investing in tributaries for restoration of large river fishes in the Anthropocene

Rehabilitation of large Anthropocene rivers requires engagement of diverse stakeholders across a broad range of sociopolitical boundaries. Competing objectives often constrain options for ecological restoration of large rivers whereas fewer competing objectives may exist in a subset of tributaries. Further, tributaries contribute toward building a “portfolio” of river ecosystem assets through physical and biological processes that may present opportunities to enhance the resilience of large river fishes. Our goal is to review roles of tributaries in enhancing mainstem large river fish populations. We present case histories from two greatly altered and distinct large-river tributary systems that highlight how tributaries contribute four portfolio assets to support large-river fish populations: 1) habitat diversity, 2) connectivity, 3) ecological asynchrony, and 4) density-dependent processes. Finally, we identify future research directions to advance our understanding of tributary roles and inform conservation actions. In the Missouri River United States, we focus on conservation efforts for the state endangered lake sturgeon, which inhabits large rivers and tributaries in the Midwest and Eastern United States. In the Colorado River, Grand Canyon United States, we focus on conservation efforts for recovery of the federally threatened humpback chub. In the Missouri River, habitat diversity focused on physical habitats such as substrate for reproduction, and deep-water habitats for refuge, whereas augmenting habitat diversity for Colorado River fishes focused on managing populations in tributaries with minimally impaired thermal and flow regimes. Connectivity enhancements in the Missouri River focused on increasing habitat accessibility that may require removal of physical structures like low-head dams; whereas in the Colorado River, the lack of connectivity may benefit native fishes as the disconnection provides refuge from non-native fish predation. Hydrologic variability among tributaries was present in both systems, likely underscoring ecological asynchrony. These case studies also described density dependent processes that could influence success of restoration actions. Although actions to restore populations varied by river system, these examples show that these four portfolio assets can help guide restoration activities across a diverse range of mainstem rivers and their tributaries. Using these assets as a guide, we suggest these can be transferable to other large river-tributary systems.

Frontiers in Environmental Science↗

USGS2020

Wind River subbasin restoration: Annual report of US..Geological Survey activities, January 2018 through December 2018

We sampled juvenile wild Steelhead Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize populations and investigate life-history metrics, particularly migratory patterns. We used Passive Integrated Transponder (PIT)-tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead have been planted in the Wind River subbasin since 1997, and hatchery adults are estimated to be less than one percent of spawners in most years (pers comm. Thomas Buehrens, Washington Department of Fish and Wildlife). Our repeated headwater sampling of consistent sites in the Wind River subbasin has also allowed us to track relative abundance of Brook Trout, a non-native species to the Wind River. Our work is contributing to understanding of Steelhead population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, where our PTISs are helping to quantify adult response. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administration’s (BPA) Research Monitoring and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (www.cbfish.org/ProgramStrategy.mvc/ViewProgramStrategySummary/1). Specifically this work addresses the sub-strategies of: 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and to Uncertainties Research regarding differing life histories of a wild Steelhead population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. Our headwaters parr PIT tagging, WDFW parr, smolt, and adult tagging and our instream PTISs are providing data on movements and life histories of parr, smolt, and adult Steelhead. During summer 2018, we PIT-tagged 1,592 age-0 and age-1 Steelhead parr in headwater areas of the Wind River subbasin to characterize population traits and investigate life-history diversity, including growth and pre-smolt downstream movement. Repeat headwater sampling and smolt trap operations provide opportunities for recapture, and instream PTISs and Columbia River infrastructure provide opportunity for detection of PIT-tagged fish. Throughout the year, we maintained a series of six instream PTISs to monitor movement of tagged Steelhead parr, smolts, and adults. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. Substantial numbers of parr make downstream movements as age-1 fish. We have estimated that from 15 to 33 percent of parr tagged as age-0 fish make downstream migrations at age-1 for additional rearing. We have estimated that from 1 to 27 percent of parr tagged as age-1 fish make downstream migrations during fall. These findings raise many questions about parr rearing strategies, habitat use, and success of these migrants and suggest a need for broader monitoring of juvenile Steelhead in some river systems to fully document juvenile production. Long-term monitoring of PIT-tagged fish is providing information on contribution of various life-history strategies to smolt production and adult returns. Movements of PIT-tagged adult Steelhead were recorded at instream PTISs. These data have allowed assessment of adult returns to tributary watersheds within the Wind River subbasin. Detection efficiency of adult PIT-tagged Steelhead at our primary adult-monitoring PTIS in Trout Creek has been greater than 92 percent during 6 of the past 7 years. This is providing excellent data to estimate adult returns to this watershed. Determination of adult use of tributary watersheds is providing data to help evaluate the efficacy of the removal of Hemlock Dam on Trout Creek. Hemlock Dam, located at rkm 2.0 of Trout Creek, was removed in summer 2009. The dam contributed to hydrologic impairment of Trout Creek and had potential negative effects on Steelhead. The improvements made to the upper Wind River PTIS (site code WRU at rkm 28.3; better site characteristics and grid power) during 2016 and 2017, and a planned new site in the Mine Reach of the upper Wind River, will allow estimates of subbasin adult escapement like those in Trout Creek. During 2018, we also completed planning and permitting with U.S. Forest Service for a new PTIS site at rkm 36 of the Wind River (the Mine Reach, mentioned above). This site will replace two sites (one in Paradise Creek and one at rkm 41 of the Wind River), which had operational challenges due to lack of adequate solar power and winter difficulties. The new Mine Reach PTIS site at rkm 36, will have better solar exposure, fewer winter operations difficulties, and provide opportunity to detect fish from juvenile sampling sites that were downstream of the previous two PTISs. The more consistent operation of the new Mine Reach PTIS site will increase our ability to estimate migrant abundance as all the juveniles tagged upstream of it will be subject to the same potential detection history, instead of three different potential detection histories as before. Additionally, with the new Mine Reach PTIS site lower in the watershed, it will subject more PIT-tagged adult Steelhead to detection and provide ability to generate a nonbiased adult-detection efficiency estimate for the WRU PTIS at rkm 28.3 of the Wind River. This will provide the opportunity to estimate yearly adult Steelhead abundance to the upper Wind watershed area. Permitting is complete and some supplies have been purchased to build and install this new site in 2019. Repeat sampling at consistent locations in the subbasin has allowed investigation into juvenile Steelhead growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer are similar across the subbasin, but lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly growth for parr tagged at age-0 is similar across the subbasin. Yearly growth for parr tagged at age-1 is lowest in Martha Creek, but similar elsewhere. Non-native Brook Trout are present in portions of the subbasin, chiefly the Trout Creek watershed, and repeat sampling has allowed us to index their prevalence. Percentage of catch that is Brook Trout at each of four sample sites in Trout Creek have declined from the period 1998 – 2003 to the period 2011 – 2018. There was a pattern of decline in percent of catch and number of Brook Trout at the Trout Creek sites from 2011 through 2016, though a slight upward trend during 2017 and 2018 has been evident. Evaluating and planning restoration efforts are of interest to many managers and agencies to ensure efficient use of resources. The evaluation of various life-histories of Steelhead within the Wind River subbasin will provide information to better track populations, and to direct habitat restoration and water allocation planning. Movement of Steelhead parr raises many questions regarding estimating juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT tagging of age-0 and age-1 Steelhead parr are increasingly allowing us to investigate such questions. Increasingly detailed Viable Salmonid Population information, such as that provided by PIT-tagging and instream PTISs networks like those in the Wind River subbasin, provide data to inform policy and management, as life-history strategies and production bottlenecks are identified and understood.

Washington↗

USGS2024

Wind River Subbasin Restoration Annual Report of USGS Activities January 2021 through December 2022

We sampled juvenile wild Steelhead Trout Oncorhynchus mykiss in headwater streams of the Wind River, WA, to characterize population attributes and investigate life-history metrics, particularly migratory patterns, and early life-stage survival. We used passive integrated transponder (PIT) tagging and a series of instream PIT-tag interrogation systems (PTISs) to track juveniles and adults. The Wind River subbasin is considered a wild Steelhead refuge by Washington Department of Fish and Wildlife (WDFW). No hatchery Steelhead Trout have been released in the Wind River subbasin since 1997, and hatchery adults are estimated at less than one percent of spawners in most years. Over twenty years of Steelhead Trout status and trend monitoring and research in the subbasin is contributing to understanding of population response to numerous restoration actions in the subbasin, including removal of Hemlock Dam from Trout Creek in 2009, which had an outdated adult ladder and contributed to increased water temperatures reducing performance of juvenile Steelhead Trout. Data from our study, and companion work by Washington Department of Fish and Wildlife, are contributing to Bonneville Power Administrations (BPA) Research, Monitoring, and Evaluation (RM&E) Program Strategy of Fish Population Status Monitoring (https://www.cbfish.org/ProgramStrategy.mvc/Index). Specifically, this work addresses the sub-strategies of 1) Assessing the Status and Trends of Diversity of Natural Origin Fish Populations and Uncertainties Research regarding differing life histories of a wild Steelhead Trout population, 2) Assessing the Status and Trend of Adult Natural Origin Fish Populations, and 3) Monitoring and Evaluating the Effectiveness of Tributary Habitat Actions Relative to Environmental, Physical, or Biological Performance Objectives. During summer and fall 2021 and 2022, we PIT-tagged 1,889 and 1,391 Steelhead parr (age-0 and age-1), respectively, in the Trout Creek and upper Wind River watersheds. Age-0 parr were at lower densities in 2022 than many years due to a poor return of adult Steelhead spawners in 2022. Steelhead Trout parr were recaptured and detected through repeat headwater sampling, smolt trap operations, and instream PTISs and Columbia River PIT-tag detection infrastructure. We maintained, and upgraded in 2022, a series of six instream PTISs to monitor movement of tagged Steelhead Trout parr, smolts, and adults, providing data to population assessments, and life-cycle research and modeling. We continue to improve our PTISs in the Wind River subbasin. The improvements in siting and addition of grid power to the upper Wind River PTIS (site code WRU, rkm 27.6) during 2016 and 2017, and the addition of the Mine Reach site (site code MIN, rkm 36.0) have much improved PIT-tagged fish monitoring in the upper Wind River watershed. The paired PTIS design in the upper Wind River watershed (sites WRU and MIN) matches that in the Trout Creek watershed (sites TRC, rkm 2.0; and TC4, rkm 11.5) and will allow comparisons of Steelhead Trout population metrics between the two watersheds as response to Hemlock Dam removal continues and future restoration efforts occur in Trout Creek. During summer 2022, we upgraded three PTISs with new transceivers and new or reconfigured antennas. We replaced the Biomark 1001 Multiplexing Transceivers with Biomark MTS IS1001 Master Controller and individual IS1001 Transceivers at WRU, TRC (Trout Creek, rkm 2.0), and TC4 (Trout Creek at 43 Road Bridge, rkm 11.5). These new transceivers and antennas will improve detection performance due to increased read range and decreased susceptibility to noise. We also installed an additional IS1001 Transceiver and 11-foot antenna at WRA in summer 2021 to increase cross-channel and water column coverage. Detection data from PIT-tagged adult Steelhead Trout at PTISs allow assessment of adult escapement to tributary watersheds within the Wind River subbasin. Adult Steelhead Trout detection efficiency estimates at our primary PTIS in Trout Creek have been greater than 99 percent during six of the past eight years and have exceeded 97% at our primary PTIS in the Wind River during seven of the past eight years. Adult escapement estimates to tributary watersheds are helping us evaluate the efficacy of the 2009 removal of Hemlock Dam from rkm 2.0 of Trout Creek. The dam had potential negative effects on Steelhead Trout populations in Trout Creek due to hydrologic impairment, increased temperatures, and adult passage issues. Hemlock Dam was laddered for adult passage, but not to modern standards, which likely resulted in avoidance by some adult Steelhead Trout. Detections at the instream PTISs have demonstrated trends of age-0 and age-1 parr emigration from natal areas during summer and fall, in addition to the expected movement of parr and smolts in spring. We have estimated that from 15 to 51% of parr tagged as age-0 fish in headwater areas make downstream migrations at age 1 for additional rearing. Downstream movement occurs primarily during spring but also in fall. We have estimated that up to 27% of Steelhead Trout parr, tagged as age-1 fish, make downstream migrations during fall. Fall migration of age-1 parr has been more common in the upper Wind River watershed than the Trout Creek watershed. These findings raise questions about where parr most successfully rear and whether migrations are density- or habitat-quality driven. Broader monitoring programs would give a more comprehensive understanding of juvenile Steelhead Trout production and rearing and contributions to adult recruitment from varied rearing strategies. Repeat sampling at consistent locations in the subbasin has enabled assessment of juvenile Steelhead Trout growth patterns. Growth rates (relative change in weight) of age-0 PIT-tagged parr during summer were similar across the subbasin, though slightly lower in the Trout Creek watershed. The greatest summer growth rate was in the mainstem of the Wind River (rkm 37 and 41). Summer growth rates were lower for age-1 parr in the Trout Creek watershed than the upper Wind River watershed. Yearly relative growth was similar across the subbasin for both age-0 and age-1 tagged parr. Lower Layout Creek had the highest yearly growth rate of parr from age-0 to age-1. Mainstem Wind River (rkm 37) had the highest yearly growth rate of parr from age-1 to age-2. Non-native Brook Trout Salvelinus fontinalis are present in the subbasin, chiefly the Trout Creek watershed, and repeat sampling provides an index of their prevalence. Mean percent-of-catch that is Brook Trout, at four sample sites in Trout Creek, has declined from the period 1998 2003 to the period 2011 2022. Percent-of-catch and number of Brook Trout at the Trout Creek sites from 2011 through 2022 has generally declined, though both metrics have been somewhat variable. Evaluation and planning of habitat restoration efforts are critical to ensure efficient use of money and resources. Assessing Steelhead Trout life history variation in the Wind River subbasin will inform research and tracking of many populations and help inform habitat restoration and water allocation planning. Movement of Steelhead Trout parr from natal areas to other rearing areas raises questions regarding juvenile abundance, origin, and habitat use within watersheds. Improved PTISs and focused PIT-tagging of age-0 and age-1 Steelhead Trout parr allow investigation of such questions. Increasingly detailed viable salmonid population information, such as that provided by PIT-tagging and instream PTIS networks like those in the Wind River, can provide data to inform fisheries policy and management and understand life-history strategies and limiting factors. Such efforts also enable assessment of long-term effects of habitat restoration actions such as the removal of Hemlock Dam on Trout Creek, and the proposed Stage-0 restoration effort for upper Trout Creek, which would be a large-scale effort to reset sections of stream within their floodplain, restoring connectivity and interaction with surrounding landscape.

Report↗

USGS2001

Relations among geology, physiography, land use, and stream habitat conditions in the Buffalo and Current River systems, Missouri and Arkansas

This study investigated links between drainage-basin characteristics and stream habitat conditions in the Buffalo National River, Arkansas and the Ozark National Scenic Riverways, Missouri. It was designed as an associative study - the two parks were divided into their principle tributary drainage basins and then basin-scale and stream-habitat data sets were gathered and compared between them. Analyses explored the relative influence of different drainage-basin characteristics on stream habitat conditions. They also investigated whether a relation between land use and stream characteristics could be detected after accounting for geologic and physiographic differences among drainage basins. Data were collected for three spatial scales: tributary drainage basins, tributary stream reaches, and main-stem river segments of the Current and Buffalo Rivers. Tributary drainage-basin characteristics were inventoried using a Geographic Information System (GIS) and included aspects of drainage-basin physiography, geology, and land use. Reach-scale habitat surveys measured channel longitudinal and cross-sectional geometry, substrate particle size and embeddedness, and indicators of channel stability. Segment-scale aerial-photo based inventories measured gravel-bar area, an indicator of coarse sediment load, along main-stem rivers. Relations within and among data sets from each spatial scale were investigated using correlation analysis and multiple linear regression. Study basins encompassed physiographically distinct regions of the Ozarks. The Buffalo River system drains parts of the sandstone-dominated Boston Mountains and of the carbonate-dominated Springfield and Salem Plateaus. The Current River system is within the Salem Plateau. Analyses of drainage-basin variables highlighted the importance of these physiographic differences and demonstrated links among geology, physiography, and land-use patterns. Buffalo River tributaries have greater relief, steeper slopes, and more streamside bluffs than the Current River tributaries. Land use patterns in both river systems correlate with physiography - cleared land area is negatively associated with drainage-basin average slope. Both river systems are dominantly forested (0-35 per-cent cleared land), however, the potential for landscape disturbance may be greater in the Buffalo River system where a larger proportion of cleared land occurs on steep slopes (>15 degrees). When all drainage basins are grouped together, reach-scale channel characteristics show the strongest relations with drainage-basin physiography. Bankfull channel geometry and residual pool dimensions are positively correlated with drainage area and topographic relief variables. After accounting for differences in drainage area, channel dimensions in Buffalo River tributaries tend to be larger than in Current River tributaries. This trend is consistent with the flashy runoff and large storm flows that can be generated in rugged, sandstone-dominate terrain. Substrate particle size is also most strongly associated with physiography; particle size is positively correlated with topographic relief variables. When tributaries are subset by river system, relations with geology and land use variables become apparent. Buffalo River tributaries with larger proportions of carbonate bedrock and cleared land area have shallower channels, better-sorted, gravel-rich substrate, and more eroding banks than those with little cleared land and abundant sandstone bedrock. Gravel-bar area on the Buffalo River main stem was also larger within 1-km of carbonate-rich tributary junctions. Because geology and cleared land are themselves correlated, relations with anthropogenic and natural factors could often not be separated. Channel characteristics in the Current River system show stronger associations with physiography than with land use. Channels are shallower and have finer substrates in the less rugged, karst-rich, western basins than in the

Arkansas, Missouri↗

USGS2004

Tritium hydrology of the Mississippi River basin

In the early 1960s, the US Geological Survey began routinely analysing river water samples for tritium concentrations at locations within the Mississippi River basin. The sites included the main stem of the Mississippi River (at Luling Ferry, Louisiana), and three of its major tributaries, the Ohio River (at Markland Dam, Kentucky), the upper Missouri River (at Nebraska City, Nebraska) and the Arkansas River (near Van Buren, Arkansas). The measurements cover the period during the peak of the bomb-produced tritium transient when tritium concentrations in precipitation rose above natural levels by two to three orders of magnitude. Using measurements of tritium concentrations in precipitation, a tritium input function was established for the river basins above the Ohio River, Missouri River and Arkansas River sampling locations. Owing to the extent of the basin above the Luling Ferry site, no input function was developed for that location. The input functions for the Ohio and Missouri Rivers were then used in a two-component mixing model to estimate residence times of water within these two basins. (The Arkansas River was not modelled because of extremely large yearly variations in flow during the peak of the tritium transient.) The two components used were: (i) recent precipitation (prompt outflow) and (ii) waters derived from the long-term groundwater reservoir of the basin. The tritium concentration of the second component is a function of the atmospheric input and the residence times of the groundwaters within the basin. Using yearly time periods, the parameters of the model were varied until a best fit was obtained between modelled and measured tritium data. The results from the model indicate that about 40% of the flow in the Ohio River was from prompt outflow, as compared with 10% for the Missouri River. Mean residence times of 10 years were calculated for the groundwater component of the Ohio River versus 4 years for the Missouri River. The mass flux of tritium through the Mississippi Basin and its tributaries was calculated during the years that tritium measurements were made. The cumulative fluxes, calculated in grams of 3II were: (i) 160 g for the Ohio (1961-1986), (ii) 98 g for the upper Missouri (1963-1997), (iii) 30 g for the Arkansas (1961-1997) and (iv) 780 g for the Mississippi (1961-1997). Published in 2004 by John Wiley and Sons, Ltd.

Mississippi River basin↗

USGS2017

Effectiveness of environmental flows for riparian restoration in arid regions: A tale of four rivers

Environmental flows have become important restoration tools on regulated rivers. However, environmental flows are often constrained by other demands within the river system and thus typically are comprised of smaller water volumes than the natural flows they are meant to replace, which can limit their functional efficacy. We review environmental flow programs aimed at restoring riparian vegetation on four arid zone rivers: the Tarim River in China; the Bill Williams River in Arizona, U.S.; the delta of the Colorado River in Mexico; and the Murrumbidgee River in southern Australia. Our goal is to determine what worked and what did not work to accomplish restoration goals. The lower Tarim River in China formerly formed a “green corridor” across the Taklamakan Desert. The riparian zone deteriorated due to diversion of surface and groundwater for irrigated agriculture. A massive restoration program began in 2000 with release of 1038 million cubic meters of water over the first three years. Groundwater levels rose but the ecological response was less than expected politically, socially and within the scientific community. However, releases continued and by 2015 portions of the original iconic Populus euphratica (Euphrates poplar) forest were reestablished. The natural flow regime of the Bill Williams River was disrupted by construction of a dam in 1968, dramatically reducing peak flows along with associated fluvial processes. As a result, the channel narrowed and riparian vegetation expanded and was comprised largely of an introduced shrub species ( Tamarix spp.). Environmental flow releases including small, managed floods and sustained base flows have been implemented since the mid 1990’s to promote establishment and maintenance of native riparian trees (cottonwoods and willows) and have been successful, although in a “downsized” portion of the valley bottom. Experience from the Bill Williams was used to help design the Minute 319 environmental flow in the delta of the Colorado River in 2014. Water was released as a short, one-time pulse during spring with the intent of starting new cohorts of cottonwood and willow. However, fluvial disturbance was limited by the relatively small magnitude pulse, low flows did not continue throughout the growing season in some reaches, native tree recruitment was low, and most of the new plants recruited were Tamarix . The inundated portion of the floodplain did respond with a temporary increase in greenness as measured by satellite vegetation indices, however. The Murrumbidgee River in Australia is a tributary in the Murray-Darling River Basin, which supports iconic red gum ( Eucalyptus camaldulensis ) forests that depend on near-yearly floods for maintenance. During the recent Millennial Drought (2000–2010) environmental flows were provided on an experimental basis to small portions of the Yanga National Forest to see how much water was needed. As with the Colorado River delta, gains in vegetation vigor as measured by satellite vegetation indices following the flows were temporary. Environmental flows in the Bill Williams were able to restore enough overbank flooding and fluvial disturbance to promote some establishment of new cohorts of trees, but on the Colorado and Murrumbidgee Rivers larger volumes of total flows released over longer periods and targeted restoration will be needed to restore the ecosystems. A measure of success in restoring the Euphrates poplar forest on the Tarim and germinating new chorts of willows on the Bill Williams has been achieved after 15–20 years of environmental flows, but the Colorado River delta and Murrumbidgee Rivers have only received one or two flows. Success in enhancing native trees in the Colorado delta has been achieved in restoration plots, but the Murrumbidgee will require large overbank flows on a continuing schedule to rejuvenate the red gum forest.

Ecological Engineering↗

USGS1998

N2O emissions from a nitrogen-enriched river

Nitrous oxide (N2O) emissions from the South Platte River in Colorado were measured using closed chambers in the fall, winter, and summer of 1994- 1995. The South Platte River was enriched in inorganic N (9-800 ??M) derived from municipal wastewater effluent and groundwater return flows from irrigated agricultural fields. River water was as much as 2500% supersaturated with N2O, and median N2O emission rates from the river surface ranged from less than 90 to 32 600 ??g-N m-2 d-1. Seventy-nine percent of the variance in N2O emission rates was explained by concentrations of total inorganic N in river water and by water temperature. The estimated total annual N2O emissions from the South Platte River were 2 x 1013-6 x 1013 ??g-N yr-1. This amount of annual N2O emissions was similar to the estimated annual N2O emissions from all primary municipal wastewater treatment processes in the United States (1). Results from this study indicate that N-enriched rivers could be important anthropogenic sources of N2O to the atmosphere. However, N2O emission measurements from other N-enriched rivers are needed to better quantify this source.Nitrous oxide (N2O) emissions from the South Platte River in Colorado were measured using closed chambers in the fall, winter, and summer of 1994-1995. The South Platte River was enriched in inorganic N (9-800 ??M) derived from municipal wastewater effluent and groundwater return flows from irrigated agricultural fields. River water was as much as 2500% supersaturated with N2O, and median N2O emission rates from the river surface ranged from less than 90 to 32 600 ??g-N m-2 d-1. Seventy-nine percent of the variance in N2O emission rates was explained by concentrations of total inorganic N in river water and by water temperature. The estimated total annual N2O emissions from the South Platte River were 2??1013-6??1013 ??g-N yr-1. This amount of annual N2O emissions was similar to the estimated annual N2O emissions from all primary municipal wastewater treatment processes in the United States. Results from this study indicate that N-enriched rivers could be important anthropogenic sources of N2O to the atmosphere. However, N2O emission measurements from other N-enriched rivers are needed to better quantify this source.

Environmental Science & Technology↗

USGS1947

Preliminary report on stratigraphy and structure of the area of Kigalik and Awuna Rivers, Alaska

During the summer of. 1947, U. S. Geological Survey Party No. 2 made a reconnaissance survey of the area between Awuna River and the divide north of the Kigalik River. The westernmost observations were made along the Awuna anticline to longitude about 157°30' W. and along the Kigalik anticline to longitude about 156°55'W. The easternmost work was done along the Knife Blade Ridge anticline at a longitude of about 154°30'W. Not all of this area was traversed, but a general idea of the area studied may be had by noting the distribution of dip and strike symbols on Figure 1. Parts of this area had been previously visited by Smith 1/ in 1927 as a part of his traverse from Allakaket to the Arctic Coast. In the period from about July 10 to August 5 his party ascended the Awuna River and Birthday Creek, portaged over the Kigalik-Awuna divide at Birthday Pass, and descended the Kigalik River to its mouth. Various parties in the field season of 1946 worked in areas not far distant. Webber 2/ began his field work near the headwaters of the Meade River and measured a section across the Kigalik anticline about 25 miles beyond the westernmost observations made on that structure by Party No. 2. Work by Chapman and Thurrell 3/ along the Colville River parallels at a distance of three or four miles work by Party No. 2 in the vicinity of Knife Blade Ridge. The easternmost observations by Party No. 2 in the vicinity of Knife Blade Ridge are about 11 miles west of the area south of Maybe Creek mapped by Ray and Fischer.4/ Of the 1947 work of other field parties that of Thurrell 5/ along the Colville River is most closely related to this report. His thickness from the base of Zone A to his Trace No. 5 is included in Column 1 of Figure 3. Webber's work 6/ along the Ikpikpuk and Titaluk Rivers is also in a closely related area. Party No. 2 moved through this area by weasel, the weasels being used extensively on the daily traverses. The party assembled at Umiat late in May and was flown out to a lake about one mile west of the Ikpikpuk River at latitude 69°40' N. where the weasels and initial supplies had been previously cached. Early in June the party moved south into the area in which it was to begin work. For the next several weeks the party worked in the area north of the Kigalik River, moving westward along the divide north of that river. At this time considerable work was done south of the Kigalik River, west of longitude 154°40'W. No closure was detected along the Kigalik anticline. Shortly after the middle of July the party moved southwestward to the vicinity of the Awuna anticline where a westerly plunge had been suggested from the study of aerial photographs. The general route of the party from then on was eastward along the divide between the Awuna and Kigalik Rivers. Due to the need to reach a food cache further east very little data was gathered in the area between Birthday and Section Creeks. It was intended to work this area by one or two spike trips from the camp at the head of Section Creek. However, after constructing a cross-section from data gathered by the party along Section Creek and by Thurreli in the area between the Colville and Awuna Rivers it became apparent that the strata exposed along the axis of the Awuna anticline were stratigraphically below the base of Zone A. It thus appeared that there would be little point in attempting to gather additional data in the area between Birthday and Section Creeks. The party continued eastward, working along the south flank of the Kigalik anticline. On September 1, the party camped about one mile west of the summit of Knife Blade Ridge. Because of unfavorable weather at this time only a small amount of field work was accomplished in the next week. Enough data was gathered to give a general picture of the structure here, but the data on stratigraphy and structure is far from exhaustive. On September 9 the party moved eastward, camping that night about 3 miles northeast of :Wolf Creek, and arriving at Umiat on the afternoon of September 10. Aerial photographs were carried in the field and used to record the points at which observations were made. A considerable amount of data was recorded on the photographs. Approximate elevations were obtained, at first by aneroid barometers, and later by more sensitive airplane altimeters. Plane table and alidade were used in local traverses in the area north of the Kigalik River to obtain dips and strikes by the 'three-point method. Nearly all other dips and strikes recorded were measured by Brunton compass. Dips of 5° or less in the area south of the Kigalik River should, in general, be considered as dip components with only the approximate strike shown. These low dips were taken on bedding traces* where it was usually impossible to observe an accurate strike with the Brunton.

Alaska↗

USGS2021

Evaluation of factors affecting migration success of adult sockeye salmon (Oncorhynchus nerka) in the Yakima River, Washington, 2020

A study was conducted during June–October 2020 to evaluate factors affecting the migration success of adult sockeye salmon ( Oncorhynchus nerka ) in the Yakima River, Washington. A total of 144 adult sockeye salmon were tagged and released during the study. Most fish (112 fish) were collected, tagged with passive integrated transponder (PIT), and released at the mouth of the Yakima River. The remaining fish were tagged with a radio transmitter and PIT tag: 13 fish were collected, tagged, and released at Prosser Dam; 13 fish were collected and tagged at Prosser Dam, transported downstream, and released at the mouth of the Yakima River; and 6 fish were collected, tagged, and released at the mouth of the Yakima River. Radio-tagged fish released at Prosser Dam initially moved upstream and spread out in the river reach between Prosser and Sunnyside Dams, but all fish stopped moving and several transmitters were recovered. Detection records and temperature data from recovered transmitters were the basis for inferring that avian predators consumed at least 6 of the 13 fish. Fifteen of the 19 radio-tagged sockeye salmon released at the mouth of the Yakima River moved upstream in the Columbia River and were detected at Johnson Island in the Hanford Reach, or at Priest Rapids Dam. Two of these fish, tagged on August 7, eventually moved back downstream and entered the Yakima River when water temperatures in the lower Yakima River were 16–18 degrees Celsius (°C). One fish moved upstream to Sunnyside Dam where its tag was later recovered. The other fish moved farther upstream and was detected at Prosser Dam, but eventually moved downstream and its tag was recovered near Benton City, Washington. None of the recovered tags were found near a carcass. More than one-half of the sockeye salmon that were collected, tagged, and released at the mouth of the Yakima River were subsequently detected, and the greatest proportion of fish from groups released during June, July, and August entered the Yakima River. This finding suggests that adult sockeye salmon are present at the mouth of the Yakima River throughout the summer. Detection records for tagged fish at monitoring sites located near cool water inputs in the lower Yakima River suggest that sockeye salmon do not spend a substantial amount of time at these locations. Fish count data at Prosser Dam fish ladders showed that sockeye salmon had a bi-modal pattern of upstream migration with peaks in late June/early July and September when water temperature in the lower Yakima River was 20 °C or less. Sixty-one percent of PIT-tagged sockeye salmon detected at Prosser Dam were eventually collected at the adult fish trapping facility at Roza Dam where fish are collected and transported upstream to Cle Elum Reservoir. These data, in conjunction with results from other studies, suggest that a substantial proportion of Yakima River sockeye salmon fail to arrive at Roza Dam. Additional research will be required to better understand factors affecting Yakima River sockeye salmon.

Washington↗

USGS2013

Occurrence and transport of nutrients in the Missouri River Basin, April through September 2011

Heavy snow and early spring rainfall generated substantial amounts of runoff and flooding in the upper part of the Missouri River Basin in 2011. Spring runoff in the upper and middle parts of the basin exceeded the storage capacity of the Missouri River reservoirs and unprecedented amounts of water were released into the lower parts of the basin resulting in record floods from June through September on the Missouri River in Iowa and Nebraska and extending into Kansas and Missouri. Runoff from the Missouri River Basin in April through September 2011 was 8,440,000 hectare meters (68,400,000 acre feet) and was only exceeded during flooding in 1993 when runoff was 11,200,000 hectare meters (90,700,000 acre feet). Nitrate and total phosphorus concentrations in the Missouri River and selected tributaries in April through September, 2011 generally were within the expected range of concentrations measured during the last 30 years. Substantial discharge from the upper and middle parts of the Missouri River Basin resulted in nitrate concentrations decreasing in the lower Missouri River beginning in June. Concentrations of nitrate in water entering the Mississippi River from the Missouri River were less in 2011 than in 1993, but total phosphorus concentrations entering the Mississippi River were substantially greater in 2011 than in 1993. The Missouri River transported an estimated 79,600 megagrams of nitrate and 38,000 megagrams of total phosphorus to the Mississippi River from April through September 2011. The nitrate flux in 2011 was less than 20 percent of the combined total from the Upper Mississippi and Missouri River Basins. In contrast, the total phosphorus flux of 38,000 megagrams from the Missouri River constituted about 39 percent of the combined total from the Upper Mississippi and Missouri River Basins during April through September 2011. Substantially more nitrate but less total phosphorus was transported from the Missouri River Basin during the historic 1993 than during the 2011 flood. Greater runoff from the lower part of the basin contributed to the greater nitrate transport in 1993. In addition to the differing amounts of runoff and the source of flood waters, changes in land use, and management practices are additional factors that may have contributed to the difference in nitrate and total phosphorus flux between the 1993 and 2011 floods.

Iowa, Kansas, Missouri, Nebraska↗

USGS2004

Fish communities of the Buffalo River Basin and nearby basins of Arkansas and their relation to selected environmental factors, 2001-2002

The Buffalo River lies in north-central Arkansas and is a tributary of the White River. Most of the length of the Buffalo River lies within the boundaries of Buffalo National River, a unit of the National Park Service; the upper 24 river kilometers lie within the boundary of the Ozark National Forest. Much of the upper and extreme lower parts of the basin on the south side of the Buffalo River is within the Ozark National Forest. During the summers of 2001 and 2002, fish communities were sampled at 52 sites in the study area that included the Buffalo River Basin and selected smaller nearby basins within the White River Basin in north-central Arkansas. Water quality (including nutrient and bacteria concentrations) and several other environmental factors (such as stream size, land use, substrate size, and riparian shading) also were measured. A total of 56 species of fish were collected from sites within the Buffalo River Basin in 2001 and 2002. All 56 species also were collected from within the boundaries of Buffalo National River. Twenty-two species were collected from headwater sites on tributaries of the Buffalo River; 27 species were collected from sites within or immediately adjacent to the Ozark National Forest. The list of species collected from Buffalo National River is similar to the list of species reported by previous investigators. Species richness at sites on the mainstem of the Buffalo River generally increased in a downstream direction. The number of species collected (both years combined) increased from 17 at the most upstream site to 38 near the mouth of the Buffalo River. In 2001 and 2002, a total of 53 species of fish were collected from sites outside the Buffalo River Basin. Several fish community metrics varied among sites in different site categories (mainstem, large tributary, small tributary, headwater, and developed out-of-basin sites). Median relative abundances of stonerollers ranged from about 25 to 55 percent and were highest at headwater and developed out-of-basin sites and lowest at mainstem sites. The relative abundances at the headwater and developed out-of-basin sites were significantly different from the relative abundances at the mainstem sites. Percentages of individuals of algivorous/herbivorous, invertivorous, and piscivorous species at headwater sites were significantly lower than values at mainstem and developed out-of-basin sites. Percentages of individuals of invertivorous species at mainstem sites were significantly higher than values at small tributary, headwater, and developed out-of-basin sites. Percentages of top carnivores at mainstem sites were significantly higher than values at tributary and headwater sites. The numbers of darter, sculpin, plus madtom species at mainstem, large tributary, and developed out-of-basin sites were significantly higher than values at other sites, and the values at small tributary sites and headwater sites were each significantly different from values at the other four types of sites. The number of lithophilic spawning species at large tributary sites was not significantly different from values at mainstem and developed out-of-basin sites, but values for small tributary and headwater sites each were significantly different from values for all other categories. Index of biotic integrity scores varied among the site categories. Scores for mainstem sites were significantly larger than all but large tributary site scores. Scores for headwater sites were significantly smaller than mainstem and large tributary site scores. Several analyses of the data described in this report suggest that drainage area is the most important single factor influencing fish communities of the Buffalo River Basin and nearby basins. Species richness increases with increasing drainage area and some species are restricted to smaller streams while other species are more common in larger streams. Some community metrics also are related to land use and related factors

Scientific Investigations Report↗

USGS2004

Streamflow and water-quality characteristics at selected sites of the St. Johns River in central Florida, 1933 to 2002

To meet water-supply needs in central Florida for 2020, the St. Johns River is being considered as a source of water supply to augment ground water from the Floridan aquifer system. Current (2004) information on streamflow and water-quality characteristics of the St. Johns River in east-central Florida is needed by water resources planners to assess the feasibility of using the river as an alternate source of water supply and to design water treatment facilities. To address this need, streamflow and water quality of the 90-mile-long middle reach of the St. Johns River, Florida, from downstream of Lake Poinsett to near DeLand, were characterized by using retrospective (1991-99) and recently collected data (2000-02). Streamflow characteristics were determined by using data from water years 1933-2000. Water-quality characteristics were described using data from 1991-99 at 15 sites on the St. Johns River and 1 site each near the mouths of the Econlockhatchee and Wekiva Rivers. Data were augmented with biweekly water-quality data and continuous physical properties data at four St. Johns River sites and quarterly data from sites on the Wekiva River, Blackwater Creek, and downstream of Blue Springs from 2000-02. Water-quality constituents described were limited to information on physical properties, major ions and other inorganic constituents, nutrients, organic carbon, suspended solids, and phytoplankton chlorophyll-a. The occurrence of antibiotics, human prescription and nonprescription drugs, pesticides, and a suite of organic constituents, which may indicate domestic or industrial waste, were described at two St. Johns River sites using limited data collected in water years 2002-03. The occurrence of these same constituents in water from a pilot water treatment facility on Lake Monroe also was described using data from one sampling event conducted in March 2003. Dissolved oxygen concentration and water pH values in the St. Johns River were significantly lower during high-flow conditions than during low-flow conditions. Low dissolved oxygen concentrations may have resulted from the input of water from marsh areas or the subsequent decomposition of organic matter transported to the river during high-flow events. Low water pH values during high-flow conditions likely resulted from the increased dissolved organic carbon concentrations in the river. Concentrations of total dissolved solids and other inorganic constituents in the St. Johns River were inversely related with streamflow. Most major ion concentrations, total dissolved solids concentrations, and specific conductance values varied substantially at the Christmas, Sanford, and DeLand sites during low-flow periods in 2000-01 probably reflecting wind and tidal effects. Sulfide concentrations as high as 6 milligrams per liter (mg/L) were measured in the St. Johns River during high-flow periods. Increased sulfide concentrations likely resulted from the decomposition of organic matter or the reduction of sulfate. Bromide concentrations as high as 17 mg/L were measured at the most upstream site on the St. Johns River during 2000-02. Temporal variations in bromide were characterized by sharp peaks in concentration during low-flow periods. Peaks in bromide concentrations tended to coincide with peaks in chloride concentrations because the likely source of both constituents is ground water affected by relict seawater. Median dissolved organic carbon concentrations ranged from 15 to 26 mg/L during 2000-02, and concentrations as high as 42 mg/L were measured. Water color values and dissolved organic carbon concentrations generally were significantly greater during high-flow conditions than during low-flow conditions. Specific ultraviolet light absorbance data indicated the organic carbon during high-flow events was more aromatic in composition and likely originated from terrestrially derived sources compared to organic carbon in the river during other times of the year. D

Scientific Investigations Report↗

USGS2007

Simulation of the effects of water withdrawals, wastewater-return flows, and land-use change on streamflow in the Blackstone River basin, Massachusetts and Rhode Island

Streamflow in many parts of the Blackstone River Basin in south-central Massachusetts and northern Rhode Island is altered by water-supply withdrawals, wastewater-return flows, and land-use change associated with a growing population. Simulations from a previously developed and calibrated Hydrological Simulation Program—FORTRAN (HSPF) precipitation-runoff model for the basin were used to evaluate the effects of water withdrawals, wastewater-return flows, and land-use change on streamflow. Most of the simulations were done for recent (1996–2001) conditions and potential buildout conditions in the future when all available land is developed to provide a long-range assessment of the effects of possible future human activities on water resources in the basin. The effects of land-use change were evaluated by comparing the results of long-term (1960–2004) simulations with (1) undeveloped land use, (2) 1995–1999 land use, and (3) potential buildout land use at selected sites across the basin. Flow-duration curves for these land-use scenarios were similar, indicating that land-use change, as represented in the HSPF model, had little effect on flow in the major tributary streams and rivers in the basin. However, land-use change—particularly increased effective impervious area—could potentially have greater effects on the hydrology, water quality, and aquatic habitat of the smaller streams in the basin. The effects of water withdrawals and wastewater-return flows were evaluated by comparing the results of long-term simulations with (1) no withdrawals and return flows, (2) actual (measured) 1996–2001 withdrawals and wastewater-return flows, and (3) potential withdrawals and wastewater-return flows at buildout. Overall, the results indicated that water use had a much larger effect on streamflow than did land use, and that the location and magnitude of wastewater-return flows were important for lessening the effects of withdrawals on streamflow in the Blackstone River Basin. Ratios of long-term (1960–2004) simulated flows with 1996–2001 water use (representing the net effect of withdrawals and wastewater-return flows) to long-term simulated flows with no water use indicated that, for many reaches, 1996–2001 water use did not deplete flows at the 90-percent flow duration substantially compared to flows unaffected by water use. Flows generally were more severely depleted in the reaches that include surface-water supplies for the larger cities in the basin (Kettle and Tatnuck Brooks, Worcester, Mass. water supply; Quinsigamond River, Shrewsbury, Mass. water supply; Crookfall Brook, Woonsocket, R.I. water supply; and Abbott Run, Pawtucket, R.I. water supply). These reaches did not have substantial wastewater-return flows that could offset the effects of the withdrawals. In contrast, wastewater-return flows from the Upper Blackstone Wastewater Treatment Facility in Millbury, Mass. increased flows at the 90-percent flow duration in the main stem of the Blackstone River compared to no-water-use conditions. Under the assumptions used to develop the buildout scenario, nearly all of the new water withdrawals were returned to the Blackstone River Basin at municipal wastewater-treatment plants or on-site septic systems. Consequently, buildout generally had small effects on simulated low flows in the Blackstone River and most of the major tributary streams compared to flows with 1996–2001 water use. To evaluate the effects of water use on flows in the rivers and major tributary streams in the Rhode Island part of the basin in greater detail, the magnitudes of water withdrawals and wastewater-return flows in relation to simulated streamflow were calculated as unique ratios for individual HSPF subbasins, total contributing areas to HSPF subbasins, and total contributing areas to the major tributary streams. For recent conditions (1996–2001 withdrawals and 1995–1999 land use), ratios of average summer (June through September) withdrawals to the long-term (1960–2004) medians of average summer streamflow simulated in the absence of water use ranged from 0.039 to 2.5 with a median value of 0.11 for total contributing areas to HSPF subbasins. The largest ratios of withdrawal rates to streamflow were for Crookfall Brook and Abbott Run, the subbasins with major withdrawals for municipal water supply. The smallest ratios were for the rural subbasins in the Branch River drainage area in the southwestern part of the basin. For recent conditions, ratios of average summer wastewater-return flows to average summer streamflows ranged from 0.0 to 0.20 with a median value of 0.029 for total contributing areas to HSPF subbasins. The largest ratios of wastewater-return flows to streamflows were for the subbasins that contained return flows from municipal wastewater-treatment plants and the subbasins along the Blackstone River because of high wastewater-return-flow rates from upstream facilities. Under the assumptions used to develop the buildout analysis, withdrawal and return-flow ratios were estimated to increase for most of the HSPF subbasins in the Rhode Island part of the basin. Ratios more than doubled for some subbasins, but the large increases mainly were for subbasins that had low ratios in 1996–2001. The HSPF model also was used to estimate the effects of water-conservation measures on low flows in rivers and major tributary streams in the Rhode Island part of the basin, the contribution of wastewater-return flows to streamflow in the Blackstone River, and the effects of changes to two local water supplies in Rhode Island. Water-conservation measures were evaluated by reducing 1996–2001 withdrawals by 20 percent. Simulations with 20-percent reductions in withdrawal rates indicated that conservation measures would result in appreciable increases in low flows in the subbasins with the highest withdrawal rates in the Rhode Island part of the Blackstone River Basin, whereas the effects on streamflow would be much less pronounced in subbasins with lower withdrawal rates. The contribution of wastewater-return flows to streamflow in the Blackstone River was evaluated by comparing simulated flows with and without municipal wastewater-return flows. Under typical summer low-flow conditions, treated wastewater was a major component of streamflow (35 to 50 percent) in the Blackstone River, and the percentage of treated wastewater was larger during the driest periods. The simulations conducted to evaluate changes to local water supplies (effects of potential withdrawals from an inactive well adjacent to Slatersville Reservoir in North Smithfield on flows in the Branch River, and the effects of connecting the town of North Smithfield to the water-supply system for the city of Woonsocket, Rhode Island) indicated that each of these activities would alter low flows only slightly in the associated stream reaches.

Massachusetts, Rhode Island↗

USGS2007

Temperature Effects of Point Sources, Riparian Shading, and Dam Operations on the Willamette River, Oregon

Water temperature is an important factor influencing the migration, rearing, and spawning of several important fish species in rivers of the Pacific Northwest. To protect these fish populations and to fulfill its responsibilities under the Federal Clean Water Act, the Oregon Department of Environmental Quality set a water temperature Total Maximum Daily Load (TMDL) in 2006 for the Willamette River and the lower reaches of its largest tributaries in northwestern Oregon. As a result, the thermal discharges of the largest point sources of heat to the Willamette River now are limited at certain times of the year, riparian vegetation has been targeted for restoration, and upstream dams are recognized as important influences on downstream temperatures. Many of the prescribed point-source heat-load allocations are sufficiently restrictive that management agencies may need to expend considerable resources to meet those allocations. Trading heat allocations among point-source dischargers may be a more economical and efficient means of meeting the cumulative point-source temperature limits set by the TMDL. The cumulative nature of these limits, however, precludes simple one-to-one trades of heat from one point source to another; a more detailed spatial analysis is needed. In this investigation, the flow and temperature models that formed the basis of the Willamette temperature TMDL were used to determine a spatially indexed 'heating signature' for each of the modeled point sources, and those signatures then were combined into a user-friendly, spreadsheet-based screening tool. The Willamette River Point-Source Heat-Trading Tool allows the user to increase or decrease the heating signature of each source and thereby evaluate the effects of a wide range of potential point-source heat trades. The predictions of the Trading Tool were verified by running the Willamette flow and temperature models under four different trading scenarios, and the predictions typically were accurate to within about 0.005 degrees Celsius (?C). In addition to assessing the effects of point-source heat trades, the models were used to evaluate the temperature effects of several shade-restoration scenarios. Restoration of riparian shade along the entire Long Tom River, from its mouth to Fern Ridge Dam, was calculated to have a small but significant effect on daily maximum temperatures in the main-stem Willamette River, on the order of 0.03?C where the Long Tom River enters the Willamette River, and diminishing downstream. Model scenarios also were run to assess the effects of restoring selected 5-mile reaches of riparian vegetation along the main-stem Willamette River from river mile (RM) 176.80, just upstream of the point where the McKenzie River joins the Willamette River, to RM 116.87 near Albany, which is one location where cumulative point-source heating effects are at a maximum. Restoration of riparian vegetation along the main-stem Willamette River was shown by model runs to have a significant local effect on daily maximum river temperatures (0.046 to 0.194?C) at the site of restoration. The magnitude of the cooling depends on many factors including river width, flow, time of year, and the difference in vegetation characteristics between current and restored conditions. Downstream of the restored reach, the cooling effects are complex and have a nodal nature: at one-half day of travel time downstream, shade restoration has little effect on daily maximum temperature because water passes the restoration site at night; at 1 full day of travel time downstream, cooling effects increase to a second, diminished maximum. Such spatial complexities may complicate the trading of heat allocations between point and nonpoint sources. Upstream dams have an important effect on water temperature in the Willamette River system as a result of augmented flows as well as modified temperature releases over the course of the summer and autumn. The TMDL was formulated prior t

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