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At least 1,189 records · Page 66Linked to original sources
USGS2020

Dietary versus nondietary fatty acid profiles of lake trout ecotypes from Lake Superior and Great Bear Lake: Are fish really what they eat?

Fatty acids are well-established biomarkers used to characterize trophic ecology, food-web linkages, and the ecological niche of many different taxa. Most often, fatty acids that are examined include only those previously identified as “dietary” or “extended dietary” biomarkers. Fatty acids considered as nondietary biomarkers, however, represent numerous fatty acids that can be extracted. Some studies may include nondietary fatty acids (i.e., combined with dietary fatty acids), but do not specifically assess them, whereas in other studies, these data are discarded. In this study, we explored whether nondietary biomarker fatty acids can provide worthwhile information by assessing their ability to discriminate intraspecific diversity within and between lakes. Nondietary fatty acids used as biomarkers delineated variation among regions, among locations within a lake, and among ecotypes within a species. Physiological differences that arise from differences in energy processing can be adaptive and linked to habitat use by a species’ ecotype and likely explains why nondietary fatty acid biomarkers can be a relevant tool to delineate intraspecific diversity. Little is known about the nondietary-mediated differences in fatty acid composition, but our results showed that nondietary fatty acid biomarkers can be useful tool in identifying variation.

Lake Superior↗
USGS2010

Microparasite ecology and health status of common bluestriped snapper Lutjanus kasmira from the Pacific Islands

Common bluestriped snappers Lutjanus kasmira were intentionally introduced into Hawaii from the South Pacific in the 1950s and have become well established throughout the archipelago. We examined health, prevalence and infection intensity of 2 microparasites, coccidia and epitheliocystis-like organisms (ELO), in L. kasmira from their introduced and native range including the islands where translocated fish originated (Tahiti and Marquesas Islands, French Polynesia) and from several other islands (American Samoa, Fiji and New Caledonia). In addition, we did a longitudinal survey of these parasites in the introduced range. Coccidia and ELO were widely distributed and were found on all islands except for New Caledonia. Health indices, as measured by overall organ lesions, body condition and parasite intensity, indicated that fish from Samoa were the least healthy, and fish from Midway (Hawaiian Archipelago) were the healthiest. Microparasite diversity was highest on Midway and Hawaii and lowest on New Caledonia. Infection of coccidia followed an asymptotic size–prevalence curve, whereas that of ELO peaked at larger size classes (27.8 cm). Prevalence and aggregation of both parasites in the host varied dynamically over 8 yr, with prevalence and aggregation of coccidia being consistently higher and lower, respectively, than ELO. We hypothesize that these parasites are enzootic to the Hawaiian Islands and were not introduced with fish from Tahiti or the Marquesas Islands. Host response and aggregation parameters suggest that coccidia exert a negative effect on their host and probably have an indirect life cycle, whereas ELO appears less pathogenic and has a direct life cycle.

Aquatic Biology↗
USGS2024

Secondary contact erodes Pleistocene diversification in a wide-ranging freshwater mussel (Quadrula)

The isolated river drainages of eastern North America serve as a natural laboratory to investigate the roles of allopatry and secondary contact in the evolutionary trajectories of recently diverged lineages. Drainage divides facilitate allopatric speciation, but due to their sensitivity to climatic and geomorphological changes, neighboring rivers frequently coalesce, creating recurrent opportunities of isolation and contact throughout the history of aquatic lineages. The freshwater mussel Quadrula quadrula is widely distributed across isolated rivers of eastern North America and possesses high phenotypic and molecular variation across its range. We integrate sequence data from three genomes, including female- and male-inherited mitochondrial markers and thousands of nuclear encoded SNPs with morphology and geography to illuminate the group's divergence history. Across contemporary isolated rivers, we found continuums of molecular and morphological variation, following a pattern of isolation by distance. In contact zones, hybridization was frequent with no apparent fitness consequences, as advanced hybrids were common. Accordingly, we recognize Q. quadrula as a single cohesive species with subspecific variation ( Q. quadrula rumphiana ). Demographic modeling and divergence dating supported a divergence history characterized by allopatric vicariance followed by secondary contact, likely driven by river rearrangements and Pleistocene glacial cycles. Despite clinal range-wide variation and hybridization in contact zones, the process-based species delimitation tool delimitR, which considers demographic scenarios like secondary contact, supported the delimitation of the maximum number of species tested. As such, when interpreting species delimitation results, we suggest careful consideration of spatial sampling and subsequent geographic patterns of biological variation, particularly for wide-ranging taxa.

eastern North America↗
USGS2011

Population assessment and potential functional roles of native mussels in the Upper Mississippi River

1. Despite a heightened global concern for native mussels, fundamental research on mussel ecology in large rivers is lacking. These gaps in knowledge about where mussels occur, and why, are limiting habitat restoration activities. 2. Large-scale systematic surveys for native mussels in three reaches of the Upper Mississippi River documented mussel communities composed of 16–23 species and ranging from 2.9–4.5 live mussels m -2 that were actively recruiting new cohorts into their populations (87–100% of the species were found as juveniles 5 years old). Estimates of mean tissue biomass and production in these reaches ranged from 2.1–3.1 g C m -2 and 0.4–0.6 g C m -2 year -1 , respectively. 3. Mussels filtered a significant amount of water (range, 0.05–0.07 m 3 m -2 d -1 ) over a 480 km reach of the Upper Mississippi River — amounting to a filtration rate of 53.1 million m 3 day -1 . The filtration rate of mussels as a percentage of river discharge ranged from 0.5–1.4% at high flows (5% exceedance), from 1.5–4.4% at moderate flows (50% exceedance) and from 4.4–12.2% during low flows (95% exceedance). 4. Collectively, these data suggest that native mussels play an integral role in this ecosystem by sequestering suspended materials that can be used by other benthic organisms.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗
USGS2014

Development of a spatially universal framework for classifying stream assemblages with application to conservation planning for Great Lakes lotic fish communities

Classifications are typically specific to particular issues or areas, leading to patchworks of subjectively defined spatial units. Stream conservation is hindered by the lack of a universal habitat classification system and would benefit from an independent hydrology-guided spatial framework of units encompassing all aquatic habitats at multiple spatial scales within large regions. We present a system that explicitly separates the spatial framework from any particular classification developed from the framework. The framework was constructed from landscape variables that are hydrologically and biologically relevant, covered all space within the study area, and was nested hierarchically and spatially related at scales ranging from the stream reach to the entire region; classifications may be developed from any subset of the 9 basins, 107 watersheds, 459 subwatersheds, or 10,000s of valley segments or stream reaches. To illustrate the advantages of this approach, we developed a fish-guided classification generated from a framework for the Great Lakes region that produced a mosaic of habitat units which, when aggregated, formed larger patches of more general conditions at progressively broader spatial scales. We identified greater than 1,200 distinct fish habitat types at the valley segment scale, most of which were rare. Comparisons of biodiversity and species assemblages are easily examined at any scale. This system can identify and quantify habitat types, evaluate habitat quality for conservation and/or restoration, and assist managers and policymakers with prioritization of protection and restoration efforts. Similar spatial frameworks and habitat classifications can be developed for any organism in any riverine ecosystem.

Michigan, Minnesota, New York, Ohio, Wisconsin↗
USGS2020

msocc: Fit and analyse computationally efficient multi‐scale occupancy models in R

Environmental DNA (eDNA) sampling is a promising tool for the detection of rare and cryptic taxa, such as aquatic pathogens, parasites and invasive species. Environmental DNA sampling workflows commonly rely on multi‐stage hierarchical sampling designs that induce complicated dependencies within the data. This complex dependence structure can be intuitively modelled with Bayesian multi‐scale occupancy models. However, current software for such models are computationally demanding, impeding their use. We present an r package, msocc , that implements a data augmentation strategy to fit fully Bayesian, computationally efficient multi‐scale occupancy models. The msocc package allows users to fit multi‐scale occupancy models, to estimate and visualize posterior summaries of site, sample and replicate‐level occupancy, and to compare different models using Bayesian information criterion. Additionally, we provide a supplemental web application that allows users to investigate study design for multi‐scale occupancy models and acts as a graphical user interface to the msocc package. The utility of the msocc package is illustrated on a published dataset and the functions in msocc are compared to the primary Bayesian toolkit for multi‐scale occupancy modelling, eDNAoccupancy , using various computational benchmarks. These benchmarks indicate that msocc is capable of fitting models 50 times faster than eDNAoccupancy . We hope that access to software that efficiently fits, analyses and conducts study design investigations for multi‐scale occupancy models facilitates their implementation by the research and wildlife management communities.

Methods in Ecology and Evolution↗
USGS2024

Understanding gaps in early detection of and rapid response to invasive species in the United States: A literature review and bibliometric analysis

While concepts regarding invasive species establishment patterns and eradication possibilities have long been a topic of invasion biology, the specific terminology referring to early detection of and rapid response to (EDRR) invasive species emerged in scientific literature during the early 2000s. Since then, the EDRR approach has expanded to include a suite of detection, planning, and management tools. By conducting a systematic literature review, we attempt to characterize the field of EDRR in the United States and its territories as reflected by publication records. Specifically, we assessed publication data such as the number of publications per year, the most common journals where papers were published, and the relationship between author’s keywords for studies focusing on aquatic and terrestrial habitats. For publications that used invasive species occurrence or abundance data (whether collected for the purposes of the respective publication or acquired from another data source), we manually vetted additional information such as focal taxa, data collection years and locations, sources of other data used, and whether data or code were deposited in open access formats. We also conducted network analyses for the author institutions that coauthored papers together most frequently and for the references most cited by EDRR publications. Overall, we found that silos existed in terms of which author institutions worked together, which existing literature was cited, and which topics were frequently explored. We also found evidence of substantial gaps in data access and use. For example, although a wide variety of data sources for invasive species occurrences are available, these sources were seldom cited by published literature, and newly collected data was not often deposited into invasive species databases or other open-source data repositories. Considering the continued advocation for a centralized national EDRR information system, our study suggests that facilitating access to data, decision support tools, and other informational resources represents a key opportunity for improving EDRR capabilities.

Ecological Informatics↗
USGS2004

Optical characteristics of natural waters protect amphibians from UV-B in the U.S. Pacific Northwest: Reply

Few ecologists would dispute that exposure to high levels of ultraviolet-B radiation (UV-B) is detrimental to organisms. It is well established that UV-B has been a critical factor shaping the physiology ( Blum et al. 1949 , Hansson 2000 ), behavior ( Pennington and Emlet 1986 , van de Mortel and Buttemer 1998 ), and distribution ( Williamson et al. 2001 , Leavitt et al. 2003 ) of many aquatic species. Recently, increasing UV-B caused by stratospheric ozone depletion has stimulated much research on the UV-B sensitivity of a wide variety of taxa, and has been found to cause direct mortality ( Calkins and Thordardottir 1980 , reviewed by Siebeck et al. 1994 ), elevate developmental abnormalities ( Ankley et al. 2002 ), increase susceptibility to disease ( Little and Fabacher 1994 , Kiesecker and Blaustein 1995 ), and change the strength of species interactions ( Sommaruga 2003 ). Increasing levels of UV-B have also been invoked as an explanation for the decline of some amphibian species, and support for this hypothesis has been extrapolated from many laboratory experiments and field studies at individual sites that indicate ambient or enhanced levels of UV-B can increase mortality of embryos and larvae (but see Licht 2003 ). This has been an especially attractive hypothesis for amphibian populations in alpine environments where direct anthropogenic impacts such as habitat modification are limited and ambient levels of UV-B are high ( Blaustein and Wake 1990 , Blaustein et al. 1994 , Alford and Richards 1999 ). However, for all the attention UV-B has received in the context of declining amphibian populations, there is little evidence linking the physiological sensitivity of individuals to actual population dynamics ( Licht 2003 ).

California, Oregon, Washington↗
USGS2014

Predicting fine-scale distributions of peripheral aquatic species in headwater streams

Headwater species and peripheral populations that occupy habitat at the edge of a species range may hold an increased conservation value to managers due to their potential to maximize intraspecies diversity and species' adaptive capabilities in the context of rapid environmental change. The southern Appalachian Mountains are the southern extent of the geographic range of native Salvelinus fontinalis and naturalized Oncorhynchus mykiss and Salmo trutta in eastern North America. We predicted distributions of these peripheral, headwater wild trout populations at a fine scale to serve as a planning and management tool for resource managers to maximize resistance and resilience of these populations in the face of anthropogenic stressors. We developed correlative logistic regression models to predict occurrence of brook trout, rainbow trout, and brown trout for every interconfluence stream reach in the study area. A stream network was generated to capture a more consistent representation of headwater streams. Each of the final models had four significant metrics in common: stream order, fragmentation, precipitation, and land cover. Strahler stream order was found to be the most influential variable in two of the three final models and the second most influential variable in the other model. Greater than 70% presence accuracy was achieved for all three models. The underrepresentation of headwater streams in commonly used hydrography datasets is an important consideration that warrants close examination when forecasting headwater species distributions and range estimates. Additionally, it appears that a relative watershed position metric (e.g., stream order) is an important surrogate variable (even when elevation is included) for biotic interactions across the landscape in areas where headwater species distributions are influenced by topographical gradients.

Ecology and Evolution↗
USGS2006

Submarine ground-water discharge: nutrient loading and nitrogen transformations

Eutrophication of coastal waters due to nonpoint source land-derived nitrogen (N) loads is a worldwide phenomenon and perhaps the greatest agent of change altering coastal ecology (National Research Council, 2000; Howarth and others, 2000). Within the United States, a majority of estuaries have been determined to be moderately to severely impaired by eutrophication associated with increasing nutrient loads (Bricker and others, 1999). In coastal watersheds with soils of high hydraulic conductivity and permeable coastal sediments, ground water is a major route of transport of freshwater and its solutes from land to sea. Freshwater flowing downgradient from aquifers may either discharge from a seepage face near the intertidal zone, or flow directly into the sea as submarine ground-water discharge (SGD) (fig. 1). In the coastal aquifer, entrainment of saline pore water occurs prior to discharge, producing a gradient in ground-water salinity from land to sea, referred to as a subterranean estuary (Moore, 1999). In addition, processes including density-driven flow and tidal pumping create brackish and saline ground-water circulation. Hence, submarine ground-water discharge often consists of a substantial amount of recirculating seawater. Mixing of fresh and saline ground waters in the context of coastal sediments may alter the chemical composition of the discharging fluid. Depending on the biogeochemical setting, removal of fixed N due to processes leading to N 2 (dinitrogen gas) production in the nearshore aquifer and subterranean estuary may significantly attenuate land-derived N loads; or, processes such as ion exchange and tidal pumping in the subterranean estuary may substantially accelerate the transport of both land-derived and sediment re-mineralized N to estuarine water columns. As emphasized by Burnett and others (2001, 2002), a fundamental problem in evaluating the importance of ground-water discharge in marine geochemical budgets is the difficulty of collecting samples across the salinity gradients of coastal aquifers. In addition, locating and quantifying rates of submarine ground-water discharge remains a challenge due to the diffuse and spatially and temporally heterogeneous nature of discharge. As a result, with regard to the study of biogeochemical cycles and chemical loads to coastal waters, the seepage face and subterranean estuary are relatively new and under-studied zones in the aquatic cascade from watershed to sea. Processes occurring in those zones must be understood and considered for proper modeling and management of coastal water resources.

Fact Sheet↗
USGS2026

Environmental tradeoffs of urban stream restoration in Fairfax County, Virginia

Regulatory mandates to improve water quality and stream health have driven substantial investment in stream restoration. Most projects aim to improve channel-floodplain connectivity, reduce sediment erosion, and enhance habitat for aquatic organisms, yet few include adequate pre- and post-restoration monitoring to assess outcomes. Since 2007, Fairfax County, Virginia, and the U.S. Geological Survey have partnered to monitor and evaluate water-quality conditions in Flatlick Branch. In 2018, a 1.72-km reach of stream above the monitoring station was restored using a Natural Channel Design approach. This study applied the Stream Functions Pyramid (SFP) framework to evaluate restoration tradeoffs. Post-restoration, watershed hydrology remained largely unchanged, but channel modifications increased flow capacity, reduced velocity, and further disconnected the channel from the floodplain. Nutrient and sediment reductions exceeded expected amounts, but the removal of over 20 % of riparian tree canopy increased physicochemical variability and the frequency and magnitude of water temperature heatwaves. Post-restoration, state standards for low dissolved oxygen and elevated pH were exceeded 2.5 and 7.5 times more often, respectively. Gross primary production and ecosystem respiration increased and organic matter sources supporting metabolism shifted from allochthonous to autochthonous. Trends in several benthic macroinvertebrate metrics, which were improving prior to construction, have since plateaued or declined, and the fish assemblage shifted from a native minnow dominated community to non-native, warmwater tolerant taxa. This study highlights the need for comprehensive assessments of stream restoration and benefits of using the SFP to understand the consequences and possible tradeoffs of different ecosystem management decisions.

Virginia↗
USGS2020

Hydrogeomorphological controls on reach‐scale distributions of cichlid nest sites in a small neotropical river

The Cichlidae are among the most diversified families of fish in the Neotropics and represent an important component of aquatic biodiversity. Understanding cichlid nest‐site selection is important for assemblages facing uncertain futures due to species invasions and environmental change. This information could be used to predict how inter‐ and intraspecific competition for reproductive space may affect populations with changing community dynamics or to identify areas as targets for conservation. We investigated which hydrogeomorphological factors correlated to preferred nest sites of four native cichlid species in the Bladen River, Belize. We recorded the locations of nest sites and collected habitat data through the study reach, including flow velocity, depth, sediment type, fish cover type richness and distance to the bank. Nest locations and physical habitat data were used to construct spatially explicit habitat models using boosted regression trees (BRTs). The models provided statistically significant evidence that physical habitat variables influence the distribution of the nest sites. We found that all species except Archocentrus spilurus were associated with substrate, specifically sand. Thorichthys meeki was also associated with lower water velocities, whereas Cichlasoma salvini was influenced by all five variables. Vieja maculicauda and Archocentrus spilurus were both influenced by flow velocity, distance to bank and depth, although A. spilurus preferred deeper, slightly faster locations about the same distance to the bank. This study suggests that the spatial distribution of nest sites within this cichlid community is significantly different than random and is at least partially governed by physical controls.

Monkey River Basin↗
USGS2004

Landsat TM inventory and assessment of waterbird habitat in the southern altiplano of South America

The diverse set of wetlands in southern altiplano of South America supports a number of endemic and migratory waterbirds. These species include endangered endemic flamingos and shorebirds that nest in North America and winter in the altiplano . This research developed maps from nine Landsat Thematic Mapper (TM) images (254,300 km 2 ) to provide an inventory of aquatic waterbird habitats. Image processing software was used to produce a map with a classification of wetlands according to the habitat requirements of different types of waterbirds. A hierarchical procedure was used to, first, isolate the bodies of water within the TM image; second, execute an unsupervised classification on the subsetted image to produce 300 signatures of cover types, which were further subdivided as necessary. Third, each of the classifications was examined in the light of field data and personal experience for relevance to the determination of the various habitat types. Finally, the signatures were applied to the entire image and other adjacent images to yield a map depicting the location of the various waterbird habitats in the southern altiplano . The data sets referenced with a global positioning system receiver were used to test the classification system. Multivariate analysis of the bird communities censused at each lake by individual habitats indicated a salinity gradient, and then the depth of the water separated the birds. Multivariate analysis of the chemical and physical data from the lakes showed that the variation in lakes were significantly associated with difference in depth, transparency, latitude, elevation, and pH. The presence of gravel bottoms was also one of the qualities distinguishing a group of lakes. This information will be directly useful to the Flamingo Census Project and serve as an element for risk assessment for future development.

Wetlands Ecology and Management↗
USGS2003

Composition, complexity, and tree mortality in riparian forests in the central Western Cascades of Oregon

Riparian forests contribute to the diversity and function of both terrestrial and aquatic ecosystems. To assess some of these contributions, we compared tree composition, stand complexity, and temporal patterns of tree mortality on permanent plots in seven mature and old-growth stands representing upland forests and forests along low- and mid-order streams in the Western Cascade Range of Oregon. We also assessed recruitment of large wood into stream channels due to tree mortality, both by direct measurement and by estimation from tree mortality and location data. Stands differed in composition due to both stream order and successional stage. Stands on mid-order streams had high abundance of hardwood trees and/or Thuja plicata . Stand complexity (variability in tree diameters, tree life-form diversity, and tree species diversity), was high in stands on mid-order streams and in the upland, old-growth stand. Tree mortality was exceptionally high in six of the seven stands in 1996, the year in which the largest flood during the study occurred. However, only in the one stand on an unconstrained reach of a mid-order stream was mortality primarily due to flooding. Estimated recruitment of wood was much higher from the stand on the unconstrained reach than from the other stands on mid-order streams, suggesting that unconstrained reaches may be important for efforts to maintain or restore large wood in streams.

Oregon↗
USGS2020

The elephant in the lab (and field): Contamination in aquatic environmental DNA studies

The rapid evolution of environmental (e)DNA methods has resulted in knowledge gaps in smaller, yet critical details like proper use of negative controls to detect contamination. Detecting contamination is vital for confident use of eDNA results in decision-making. We conducted two literature reviews to summarize (a) the types of quality assurance measures taken to detect contamination of eDNA samples from aquatic environments, (b) the occurrence, frequency and attribution (i.e., putative sources) of unexpected amplification in these quality assurance samples, and (c) how results were interpreted when contamination occurred. In the first literature review, we reviewed 156 papers and found that 91% of targeted and 73% of metabarcoding eDNA studies reported inclusion of negative controls within their workflows. However, a large percentage of targeted (49%) and metabarcoding (80%) studies only reported negative controls for laboratory procedures, so results were potentially blind to field contamination. Many of the 156 studies did not provide critical methodological information and amplification results of negative controls. In our second literature review, we reviewed 695 papers and found that 30 targeted and 32 metabarcoding eDNA studies reported amplification of negative controls. This amplification occurred at similar proportions for field and lab workflow steps in targeted and metabarcoding studies. These studies most frequently used amplified negative controls to delimit a detection threshold above which is considered significant or provided rationale for why the unexpected amplifications did not affect results. In summary, we found that there has been minimal convergence over time on negative control implementation, methods, and interpretation, which suggests that increased rigor in these smaller, yet critical details remains an outstanding need. We conclude our review by highlighting several studies that have developed especially effective quality assurance, control and mitigation methods.

Frontiers in Ecology and Evolution↗
USGS2025

Rice cultivation supports growth and survival of a threatened semi-aquatic reptile

Integration of agroecosystems and other working landscapes with protected lands and waters is critical to the conservation of Earth's biodiversity. Rice agroecosystems support many species by providing aquatic habitat where natural wetlands have been altered or drained. In regions with long dry seasons, rice fields and associated irrigation canals provide essential habitat for wetland-dependent species. We quantified the spatial scale and magnitude of the effect of rice growing on the growth and survival of the giant gartersnake ( Thamnophis gigas ), a threatened species that persists primarily in areas of rice agriculture in the Central Valley of California, USA. We used structural causal models to identify drought condition as a key confounder to adjust for when estimating the total effect of rice growing on demographic rates. We analyzed capture-mark-recapture data from 19 populations of giant gartersnakes with an integrated growth–survival model and used distance-weighted covariates to account for the decline in influence of rice with increasing distance from our study sites. We found strong support for a positive effect of rice grown within 1.9 km of a canal on giant gartersnake growth. There was also support for a positive effect of rice on giant gartersnake survival, although the spatial scale extended out to 5 km or more. Our results demonstrate how active rice growing benefits giant gartersnakes inhabiting irrigation canals and demonstrate an approach for studying landscape effects on wildlife in agroecosystems.

California↗
USGS2011

A riverscape perspective of Pacific salmonids and aquatic habitats prior to large-scale dam removal in the Elwha River, Washington, USA

Dam removal has been increasingly proposed as a river restoration technique. In 2011, two large hydroelectric dams will be removed from Washington State’s Elwha River. Ten anadromous fish populations are expected to recolonise historical habitats after dam removal. A key to understanding watershed recolonisation is the collection of spatially continuous information on fish and aquatic habitats. A riverscape approach with an emphasis on biological data has rarely been applied in mid-sized, wilderness rivers, particularly in consecutive years prior to dam removal. Concurrent snorkel and habitat surveys were conducted from the headwaters to the mouth (rkm 65–0) of the Elwha River in 2007 and 2008. This riverscape approach characterised the spatial extent, assemblage structure and patterns of relative density of Pacific salmonids. The presence of dams influenced the longitudinal patterns of fish assemblages, and species richness was the highest downstream of the dams, where anadromous salmonids still have access. The percent composition of salmonids was similar in both years for rainbow trout, Oncorhynchus mykiss (Walbaum), coastal cutthroat trout, Oncorhynchus clarkii clarkii (Richardson) (89%; 88%), Chinook salmon, Oncorhynchus tshawytscha (Walbaum) (8%; 9%), and bull trout, Salvelinus confluentus (Suckley) (3% in both years). Spatial patterns of abundance for rainbow and cutthroat trout ( r = 0.76) and bull trout ( r = 0.70) were also consistent between years. Multivariate and univariate methods detected differences in habitat structure along the river profile caused by natural and anthropogenic factors. The riverscape view highlighted species-specific biological hotspots and revealed that 60–69% of federally threatened bull trout occurred near or below the dams. Spatially continuous surveys will be vital in evaluating the effectiveness of upcoming dam removal projects at restoring anadromous salmonids.

Washington↗
USGS2017

Loss of dendritic connectivity in southern California's urban riverscape facilitates decline of an endemic freshwater fish

Life history adaptations and spatial configuration of metapopulation networks allow certain species to persist in extreme fluctuating environments, yet long-term stability within these systems relies on the maintenance of linkage habitat. Degradation of such linkages in urban riverscapes can disrupt this dynamic in aquatic species, leading to increased extinction debt in local populations experiencing environment-related demographic flux. We used microsatellites and mtDNA to examine the effects of collapsed network structure in the endemic Santa Ana sucker Catostomus santaanae of southern California, a threatened species affected by natural flood-drought cycles, ‘boom-and-bust’ demography, hybridization, and presumed artificial transplantation. Our results show a predominance of drift-mediated processes in shaping population structure, and that reverse mechanisms for counterbalancing the genetic effects of these phenomena have dissipated with the collapse of dendritic connectivity. We use approximate Bayesian models to support two cases of artificial transplantation, and provide evidence that one of the invaded systems better represents the historic processes that maintained genetic variation within watersheds than any remaining drainages where C. santaanae is considered native. We further show that a stable dry gap in the northern range is preventing genetic dilution of pure C. santaanae persisting upstream of a hybrid assemblage involving a non-native sucker, and that local accumulation of genetic variation in the same drainage is influenced by position within the network. This work has important implications for declining species that have historically relied on dendritic metapopulation networks to maintain source-sink dynamics in phasic environments, but no longer possess this capacity in urban-converted landscapes.

California↗