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At least 1,171 records · Page 65Linked to original sources

USGS2011

Functional profiles reveal unique ecological roles of various biological soil crust organisms

At the heart of the body of research on biodiversity effects on ecosystem function is the debate over whether different species tend to be functionally singular or redundant. When we consider ecosystem multi‐function, the provision of multiple ecosystem functions simultaneously, we may find that seemingly redundant species may in fact play unique roles in ecosystems. 2. Over the last few decades, the significance of biological soil crusts (BSCs) as ecological boundaries and ecosystem engineers, and their multi‐functional nature, has become increasingly well documented. We compiled ‘functional profiles’ of the organisms in this understudied community, to determine whether functional singularity emerges when multiple ecosystem functions are considered. 3. In two data sets, one representing multiple sites around the semi‐arid regions of Spain (regional scale), and another from a single site in central Spain (local scale), we examined correlations between the abundance or frequency of BSC species in a community, and multiple surrogates of ecosystem functioning. There was a wide array of apparent effects of species on specific functions. 4. Notably, in gypsiferous soils and at regional scale, we found that indicators of carbon (C) and phosphorus cycling were apparently suppressed and promoted by the lichens Diploschistes diacapsis and Squamarina lentigera , respectively. The moss Pleurochaete squarrosa appears to promote C cycling in calcareous soils at this spatial scale. At the local scale in gypsiferous soils, D. diacapsis positively correlated with carbon cycling, but negatively with nitrogen cycling, whereas numerous lichens exhibited the opposite profile. 5. We found a high degree of functional singularity, i.e. that species were highly individualistic in their effects on multiple functions. Many functional attributes were not easily predictable from existing functional grouping systems based primarily on morphology. 6. Our results suggest that maintaining species‐rich BSC communities is crucial to maintain the overall functionality of ecosystems dominated by these organisms, and that dominance and the outcome of competition could be highly influential in the determination of such functionality.

Functional Ecology↗

USGS2010

Geochemical and mineralogical evidence for Sahara and Sahel dust additions to Quaternary soils on Lanzarote, eastern Canary Islands, Spain

Africa is the most important source of dust in the world today, and dust storms are frequent on the nearby Canary Islands. Previous workers have inferred that the Sahara is the most important source of dust to Canary Islands soils, with little contribution from the Sahel region. Soils overlying a late Quaternary basalt flow on Lanzarote, Canary Islands, contain, in addition to volcanic minerals, quartz and mica, exotic to the island's bedrock. Kaolinite in the soils also likely has an exotic origin. Trace-element geochemistry shows that the soils are derived from varying proportions of locally derived basalt and African dust. Major-element geochemistry, clay mineralogy and interpretation of satellite imagery suggest that dust additions to the Canary Islands come not only from the Sahara Desert, but also from the Sahel region. ?? Published 2010. This article is a US Government work and is in the public domain in the USA.

Terra Nova↗

USGS2005

Preferential flow and transport of nitrate and bromide in claypan soil

The in situ measurement of water flow and chemical transport through clay pan soils is crucial to understanding potential water contamination from agricultural sources. It is important due to the large areal extent of these soils in agricultural regions of the midwestern United States and because of preferential flow paths caused by desiccation cracks, worms burrowing, and root development. A study plot at the Missouri Management Systems Evaluation Area near Centralia, Missouri, was instrumented to determine the rate of preferential flow of water and transport of NO 3 −1 fertilizer in the unsaturated zone through a claypan soil using 15 N‐NO 3 −1 and Br‐1 tracers. The areal distribution of preferential flow paths was between 2 and 20% in the topsoil. Gravity lysimeter flow caused by preferential flow through the claypan was as much as 150 times greater than the estimated average rate of vertical recharge. As much as 2.4% of the volume of the soil below the clay pan may be occupied by preferential flow paths.

Ground Water↗

USGS2016

Linking dominant Hawaiian tree species to understory development in recovering pastures via impacts on soils and litter

Large areas of tropical forest have been cleared and planted with exotic grass species for use as cattle pasture. These often remain persistent grasslands after grazer removal, which is problematic for restoring native forest communities. It is often hoped that remnant and/or planted trees can jump-start forest succession; however, there is little mechanistic information on how different canopy species affect community trajectories. To investigate this, I surveyed understory communities, exotic grass biomass, standing litter pools, and soil properties under two dominant canopy trees— Metrosideros polymorpha (‘ōhi‘a) and Acacia koa (koa)—in recovering Hawaiian forests. I then used structural equation models (SEMs) to elucidate direct and indirect effects of trees on native understory. Native understory communities developed under ‘ōhi‘a, which had larger standing litter pools, lower soil nitrogen, and lower exotic grass biomass than koa. This pattern was variable, potentially due to historical site differences and/or distance to intact forest. Koa, in contrast, showed little understory development. Instead, data suggest that increased soil nitrogen under koa leads to high grass biomass that stalls native recruitment. SEMs suggested that indirect effects of trees via litter and soils were as or more important than direct effects for determining native cover. It is suggested that diverse plantings which incorporate species that have high carbon to nitrogen ratios may help ameliorate the negative indirect effects of koa on natural understory regeneration.

Hawai‘i↗

USGS1976

The "Soil" of Mars (Viking 1)

The location of the Viking 1 lander is most ideal for the study of soil properties because it has one footpad in soft material and one on hard material. As each soil sample was acquired, information on soil properties was obtained. Although analysis is still under way, early results on bulk density, particle size, angle of internal friction, cohesion, adhesion, and penetration resistance of the soil of Mars are presented.

Science↗

USGS2015

Natural soil reservoirs for human pathogenic and fecal indicator bacteria

Soils receive inputs of human pathogenic and indicator bacteria through land application of animal manures or sewage sludge, and inputs by wildlife. Soil is an extremely heterogeneous substrate and contains meso- and macrofauna that may be reservoirs for bacteria of human health concern. The ability to detect and quantify bacteria of human health concern is important in risk assessments and in evaluating the efficacy of agricultural soil management practices that are protective of crop quality and protective of adjacent water resources. The present chapter describes the distribution of selected Gram-positive and Gram-negative bacteria in soils. Methods for detecting and quantifying soilborne bacteria including extraction, enrichment using immunomagnetic capture, culturing, molecular detection and deep sequencing of metagenomic DNA to detect pathogens are overviewed. Methods for strain phenotypic and genotypic characterization are presented, as well as how comparison with clinical isolates can inform the potential for human health risk.

Book chapter↗

USGS1994

Degradation of methyl bromide by methanotrophic bacteria in cell suspensions and soils

Cell suspensions of Methylococcus capsulatus mineralized methyl bromide (MeBr), as evidenced by its removal from the gas phase, the quantitative recovery of Br - in the spent medium, and the production of 14 CO 2 from [ 14 C]MeBr. Methyl fluoride (MeF) inhibited oxidation of methane as well as that of [ 14 C]MeBr. The rate of MeBr consumption by cells varied inversely with the supply of methane, which suggested a competitive relationship between these two substrates. However, MeBr did not support growth of the methanotroph. In soils exposed to high levels (10,000 ppm) of MeBr, methane oxidation was completely inhibited. At this concentration, MeBr removal rates were equivalent in killed and live controls, which indicated a chemical rather than biological removal reaction. At lower concentrations (1,000 ppm) of MeBr, methanotrophs were active and MeBr consumption rates were 10-fold higher in live controls than in killed controls. Soils exposed to trace levels (10 ppm) of MeBr demonstrated complete consumption within 5 h of incubation, while controls inhibited with MeF or incubated without O 2 had 50% lower removal rates. Aerobic soils oxidized [ 14 C]MeBr to 14 CO 2 , and MeF inhibited oxidation by 72%. Field experiments demonstrated slightly lower MeBr removal rates in chambers containing MeF than in chambers lacking MeF. Collectively, these results show that soil methanotrophic bacteria, as well as other microbes, can degrade MeBr present in the environment.

Applied and Environmental Microbiology↗

USGS1998

Strain IMB-1, a novel bacterium for the removal of methyl bromide in fumigated agricultural soils

A facultatively methylotrophic bacterium, strain IMB-1, that has been isolated from agricultural soil grows on methyl bromide (MeBr), methyl iodide, methyl chloride, and methylated amines, as well as on glucose, pyruvate, or acetate. Phylogenetic analysis of its 16S rRNA gene sequence indicates that strain IMB-1 classes in the alpha subgroup of the class Proteobacteria and is closely related to members of the genus Rhizobium . The ability of strain IMB-1 to oxidize MeBr to CO 2 is constitutive in cells regardless of the growth substrate. Addition of cell suspensions of strain IMB-1 to soils greatly accelerates the oxidation of MeBr, as does pretreatment of soils with low concentrations of methyl iodide. These results suggest that soil treatment strategies can be devised whereby bacteria can effectively consume MeBr during field fumigations, which would diminish or eliminate the outward flux of MeBr to the atmosphere.

Applied and Environmental Microbiology↗

USGS2024

Complex interactions of deer herbivory, soil chemistry, and competing vegetation explain oak–hickory forest tree regeneration in central Pennsylvania, USA

The root causes of forest tree regeneration failure are difficult to resolve, although numerous studies show ungulate herbivory, soil conditions, and competition from undesirable vegetation as likely contributors. To better understand the relative importance of each issue, we conducted a 7-year manipulative experiment to assess the interactive effects of white-tailed deer ( Odocoileus virginianus ) herbivory, soil acidity, and competing vegetation on tree regeneration in oak–hickory forests of central Pennsylvania, USA. Outcomes depended on initial tree seedling abundance, and all three factors had significant interactions. At low initial seedling abundance, fencing resulted in the greatest increase, but all treatments had a positive effect on seedling growth and abundance. At higher initial seedling abundance, abundance failed to recover 7 years after herbicide treatment and soil pH was an important predictor. When soil pH was >4.6 from lime application, seedling growth and abundance in unfenced controls with high initial abundance was comparable to the fenced-only treatment. Competing vegetation, assumed to be a symptom of excessive, long-term deer herbivory, does not seem to be the primary factor limiting tree regeneration in our study area. Ameliorating acid deposition warrants greater consideration as a management action because it could provide long-lasting benefits compared to short-term fence installations.

Pennsylvania↗

USGS2025

Wet antecedent soil moisture increases atmospheric river streamflow magnitudes non-linearly

Atmospheric rivers (ARs) drive most riverine floods on the United States (U.S.) West Coast. However, estimating flood risk based solely on AR intensity and duration is challenging because precipitation phase, antecedent conditions, and physical watershed characteristics (e.g., slope and soil depth) can influence the magnitude of floods. Here, we analyze how antecedent soil moisture (ASM) conditions contribute to variability in streamflow during AR events and how that changes across climatic regimes and physiography in 122 U.S. West Coast watersheds. We identify a robust non-linear relationship between streamflow and ASM during ARs in 89% of watersheds. The inflection point in this relationship represents a watershed-specific critical ASM threshold, above which event maximum streamflow is, on average, two to four and a half times larger. Wet ASM conditions amplify the hydrologic impacts of more frequent but weaker, lower moisture transport AR events, while dry ASM conditions attenuate the hydrologic impacts that stronger, higher moisture transport AR events could otherwise cause. Our research shows that watersheds prone to ASM-amplified streamflows have higher evaporation ratios, lower cold-season precipitation, lower snow-to-rain ratios, and shallower, clay-rich soils. Higher evaporation and lower precipitation lead to greater ASM variability during the cold season, increasing streamflow during wet periods and buffering streamflow during dry periods. Lower snow fraction and shallower soils limit the antecedent water storage capacity of a watershed, contributing to greater sensitivity of streamflow peaks to ASM variability. Incorporating ASM thresholds into hydrologic models in these regions prone to AR-amplified streamflow could improve forecasts and decrease uncertainty.

California, Nevada, Oregon, Washington↗

USGS2018

Application of synchrotron methods to assess the uptake of roadway-derived Zn by earthworms in an urban soil

The impact of human activities on biogeochemical cycles in terrestrial environments is nowhere more apparent than in urban landscapes. Trace metals, collected on roadways and transported by storm water, may contaminate soils and sediments associated with storm water management systems. These systems will accumulate metals and associated sediments may reach toxic levels for terrestrial and aquatic organisms using the retention basins as habitat. The fate and bioavailability of these metals once deposited is poorly understood. Here we present results from a dose-response experiment that examines the application of synchrotron X-ray fluorescence methods (μ-SXRF) to test the hypothesis that earthworms will bio-accumulate Zn in a roadway-dust contaminated soil system providing a potential pathway for roadway contaminants into the terrestrial food web, and that the storage and distribution of Zn will change with the level of exposure reflecting the micronutrient status of Zn. Lumbricus friendi was exposed to Zn-bearing roadway dust amended to a field soil at six target concentrations ranging from background levels (45 mg/kg Zn) to highly contaminated levels (460 mg/kg Zn) designed to replicate the observed concentration range in storm-water retention basin soils. After a 30 day exposure, Zn storage in the intestine is positively correlated with dose and there is a change in the pattern of Zn storage within the intestine. This relationship is only clear when μ-SXRF Zn map data is coupled with a traditional toxicological approach, and suggests that the gut concentration in L. friendi is a better indicator of Zn bioaccumulation and storage than the total body burden.

Mineralogical Magazine↗

USGS2009

Toxicological significance of soil ingestion by wild and domestic animals

Most wild and domestic animals ingest some soil or sediment, and some species may routinely, or under special circumstances, ingest considerable amounts. Ingested soil supplies nutrients, exposes animals to parasites and pathogens, and may play a role in developing immune systems. 1 Soil ingestion is also sometimes the principal route of exposure to various environmental contaminants. 2-7 Ingestion of soil and earthy material is defined as geophagy and may be either intentional or unintentional, occurring as an animal eats or grooms.

Book chapter↗

USGS2017

Soil Seed Bank Responses to Postfire Herbicide and Native Seeding Treatments Designed to Control Bromus tectorum in a Pinyon–Juniper Woodland at Zion National Park, USA

The continued threat of an invasive, annual brome ( Bromus ) species in the western United States has created the need for integrated approaches to postfire restoration. Additionally, the high germination rate, high seed production, and seed bank carryover of annual bromes points to the need to assay soil seed banks as part of monitoring programs. We sampled the soil seed bank to help assess the effectiveness of treatments utilizing the herbicide Plateau® (imazapic) and a perennial native seed mix to control annual Bromus species and enhance perennial native plant establishment following a wildfire in Zion National Park, Utah. This study is one of few that have monitored the effects of imazapic and native seeding on a soil seed bank community and the only one that we know of that has done so in a pinyon–juniper woodland. The study made use of untreated, replicated controls, which is not common for seed bank studies. One year posttreatment, Bromus was significantly reduced in plots sprayed with herbicide. By the second year posttreatment, the effects of imazapic were less evident and convergence with the controls was evident. Emergence of seeded species was low for the duration of the study. Dry conditions and possible interactions with imazapic probably contributed to the lack of emergence of seeded native species. The perennial grass sand dropseed outperformed the other species included in the seed mix. We also examined how the treatments affected the soil seed bank community as a whole. We found evidence that the herbicide was reducing several native annual forbs and one nonnative annual forb. However, overall effects on the community were not significant. The results of our study were similar to what others have found in that imazapic is effective in providing a short-term reduction in Bromus density, although it can impact emergence of nontarget species.

Utah↗

USGS2016

Germination and growth of native and invasive plants on soil associated with biological control of tamarisk (Tamarix spp.)

Introductions of biocontrol beetles (tamarisk beetles) are causing dieback of exotic tamarisk in riparian zones across the western United States, yet factors that determine plant communities that follow tamarisk dieback are poorly understood. Tamarisk-dominated soils are generally higher in nutrients, organic matter, and salts than nearby soils, and these soil attributes might influence the trajectory of community change. To assess physical and chemical drivers of plant colonization after beetle-induced tamarisk dieback, we conducted separate germination and growth experiments using soil and litter collected beneath defoliated tamarisk trees. Focal species were two common native (red threeawn, sand dropseed) and two common invasive exotic plants (Russian knapweed, downy brome), planted alone and in combination. Nutrient, salinity, wood chip, and litter manipulations examined how tamarisk litter affects the growth of other species in a context of riparian zone management. Tamarisk litter, tamarisk litter leachate, and fertilization with inorganic nutrients increased growth in all species, but the effect was larger on the exotic plants. Salinity of 4 dS m −1 benefitted Russian knapweed, which also showed the largest positive responses to added nutrients. Litter and wood chips generally delayed and decreased germination; however, a thinner layer of wood chips increased growth slightly. Time to germination was lengthened by most treatments for natives, was not affected in exotic Russian knapweed, and was sometimes decreased in downy brome. Because natives showed only small positive responses to litter and fertilization and large negative responses to competition, Russian knapweed and downy brome are likely to perform better than these two native species following tamarisk dieback.

Invasive Plant Science and Management↗

USGS2007

Biotic soil crusts in relation to topography, cheatgrass, and fire in the Columbia Basin, Washington

We studied lichen and bryophyte soil crust communities in a large public grazing allotment within a sagebrush steppe ecosystem in which the biotic soil crusts are largely intact. The allotment had been rested from grazing for 12 years, but experienced an extensive series of wildfires. In the 350, 4 x 0.5 m plots, stratified by topographic position, we found 60 species or species groups that can be distinguished in the field with a hand lens, averaging 11.5 species groups per plot. Lichen and bryophyte soil crust communities differed among topographic positions. Draws were the most disturbed, apparently from water erosion in a narrow channel and mass wasting from the steepened sides. Presumably because of this disturbance, draws had the lowest average species richness of all the topographic strata we examined. Biotic crust species richness and cover were inversely related to cover of the invasive annual, cheatgrass (Bromus tectorum), and positively related to cover of native bunchgrasses. Integrity of the biotic crust was more strongly related to cheatgrass than to fire. In general, we observed good recovery of crusts following fire, but only in those areas dominated by perennial bunchgrasses. We interpret the resilience of the biotic crust, in this case, to the low abundance of cheatgrass, low amounts of soil disturbance and high moss cover. These fires have not resulted in an explosion of the cheatgrass population, perhaps because of the historically low levels of livestock grazing.

Washington↗

USGS2004

Prediction of nonlinear soil effects

Mathematical models of soil nonlinearity in common use and recently developed nonlinear codes compared to investigate the range of their predictions. We consider equivalent linear formulations with and without frequency-dependent moduli and damping ratios and nonlinear formulations for total and effective stress. Average velocity profiles to 150 m depth with midrange National Earthquake Hazards Reduction Program site classifications (B, BC, C, D, and E) in the top 30 m are used to compare the response of a wide range of site conditions from rock to soft soil. Nonlinear soil models are compared using the amplification spectrum, calculated as the ratio of surface ground motion to the input motion at the base of the velocity profile. Peak input motions from 0.1 g to 0.9 g are considered. For site class B, no significant differences exist between the models considered in this article. For site classes BC and C, differences are small at low input motions (0.1 g to 0.2 g ), but become significant at higher input levels. For site classes D and E the overdamping of frequencies above about 4 Hz by the equivalent linear solution with frequency-independent parameters is apparent for the entire range of input motions considered. The equivalent linear formulation with frequency-dependent moduli and damping ratios under damps relative to the nonlinear models considered for site class C with larger input motions and most input levels for site classes D and E. At larger input motions the underdamping for site classes D and E is not as severe as the overdamping with the frequency-independent formulation, but there are still significant differences in the time domain. A nonlinear formulation is recommended for site classes D and E and for site classes BC and C with input motions greater than a few tenths of the acceleration of gravity. The type of nonlinear formulation to use is driven by considerations of the importance of water content and the availability of laboratory soils data. Our average amplification curves from a nonlinear effective stress formulation compare favorably with observed spectral amplification at class D and E sites in the Seattle area for the 2001 Nisqually earthquake.

Bulletin of the Seismological Society of America↗

USGS1997

Phytotoxicity of floodplain soils contaminated with trace metals along the clark fork river, Grant-Kohrs Ranch National Historic Site, Deer Lodge, Montana, United States

Concentrations of metals in sediments and soils deposited along the floodplain of the Clark Fork River, within the Grant-Kohrs Ranch National Historic Site, Deer Lodge, Montana, USA, have exceeded maximum background concentrations in the United States for most metals tested. As a result of mining and smelting activities, portions of the Deer Lodge Valley, including the Grant-Kohrs Ranch, have received National Priority List Designation under the Comprehensive Environmental Response, Compensation and Liability Act. Using a series of plant germination tests, pH measurements, and metal analyses, this study investigated the toxicity of soils from floodplain 'slicken' areas, bare spots devoid of vegetation, along the Clark Fork River. The slicken soils collected from the Grant-Kohrs Ranch were toxic to all four plant species tested. The most sensitive endpoint in the germination tests was root length and the least sensitive was emergence. Considering emergence, the most sensitive species was the resident grass species Agrostis gigantea. The sensitivities were reversed when root lengths were examined, with Echinochloa crusgalli showing the greatest sensitivity. Both elevated concentrations of metals and low pH were necessary to produce an acutely phytotoxic response in laboratory seed germination tests using slicken soils. Moreover, pH values on the Grant-Kohrs Ranch appear to be a better predictor of acutely phytotoxic conditions than total metal levels.

Environmental Toxicology and Chemistry↗

USGS2008

The role of local soil-induced amplification in the 27 July 1980 northeastern Kentucky earthquake

Amplification of earthquake ground motions by near-surface soil deposits was believed to have occurred in Maysville, Kentucky, U.S.A. during the northeast Kentucky (Sharpsburg) earthquake (mb,Lg 5.3) of July 27, 1980. The city of Maysville, founded on approximately 30 m of Late Quaternary Ohio River flood plain alluvium, was 52 km from the epicenter, but experienced equivalent or higher Modified Mercalli Intensity (MMI) VII, compared with the epicentral area of the earthquake (i.e., MMI VI-VII). In this study, dynamic soil properties were obtained at 10 sites in Maysville using seismic P-wave and S-wave (SH-mode) refraction and reflection methods. Synthetically generated composite time histories and limited geotechnical information, along with the measured dynamic properties, were used to perform one-dimensional linear-equivalent amplification analyses. The results indicated the soils generated ground-motion amplification factors between 3.0 and 6.0 and at a frequency range between 2.0 and 5.0 Hz (0.2 to 0.5 s). The building damage in Maysville from the Sharpsburg earthquake was predominantly found in one- to three-story masonry structures. The estimated fundamental period for one- to three-story masonry buildings is approximately 0.11 to 0.26 s (3.8 to 9 Hz). These correlations suggest the elevated ground motion intensity in Maysville can be accounted for by near-surface soil-amplification effects and resonance of the ground motion by the buildings (i.e., double resonance).

Environmental & Engineering Geoscience↗