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Microbial ecology of permafrost soils: Populations, processes, and perspectives

Permafrost microbial research has flourished in the past decades, due in part to improvements in sampling and molecular techniques, but also the increased focus on the permafrost greenhouse gas feedback to climate change and other ecological processes in high latitude and alpine permafrost soils. Permafrost microorganisms are adapted to these extreme environments and remain active at low temperatures and when resources are limited. They are also an important component of global elemental cycles as they regulate organic matter turnover and greenhouse gas production, particularly as permafrost thaws. Here we review the permafrost microbiology literature coupled with an exploration of its historical aspects, with a particular focus on a new understanding advanced by molecular biology techniques. We further identify knowledge gaps and ways forward to improve our understanding of microbial contributions to ecosystem biogeochemistry of permafrost-affected systems.

Permafrost and Periglacial Processes

Concentrations and distribution of manmade organic compounds in the Lake Tahoe Basin, Nevada and California, 1997-99

The U.S. Geological Survey, in cooperation with the Tahoe Regional Planning Agency and the Lahontan Regional Water-Quality Control Board, sampled Lake Tahoe, major tributary streams to Lake Tahoe, and several other lakes in the Lake Tahoe Basin for manmade organic compounds during 1997-99. Gasoline components were found in all samples collected from Lake Tahoe during the summer boating season. Methyl tert -butyl ether (MTBE), benzene, toluene, ethylbenzene, and xylenes (BTEX) were the commonly detected compounds in these samples. Most samples from tributary streams and lakes with no motorized boating had no detectable concentrations of gasoline components. Motorized boating activity appears to be directly linked in space and time to the occurrence of these gasoline components. Other sources of gasoline components to Lake Tahoe, such as the atmosphere, surface runoff, and subsurface flow, are minor compared to the input by motorized boating. Water sampled from Lake Tahoe during mid-winter, when motorized boating activity is low, had no MTBE and only one sample had any detectable BTEX compounds. Soluble pesticides rarely were detected in water samples from the Lake Tahoe Basin. The only detectable concentrations of these compounds were in samples from Blackwood and Taylor Creeks collected during spring runoff. Concentrations found in these samples were low, in the 1 to 4 nanograms per liter range. Organochlorine compounds were detected in samples collected from semipermeable membrane devices (SPMD's) collected from Lake Tahoe, tributary streams, and Upper Angora Lake. In Lake Tahoe, SPMD samples collected offshore from urbanized areas contained the largest number and highest concentrations of organochlorine compounds. The most commonly detected organochlorine compounds were cis- and trans-chlordane, p , p' -DDE, and hexachlorobenzene. In tributary streams, SPMD samples collected during spring runoff generally had higher combined concentrations of organochlorine compounds than those collected during baseflow conditions. Upper Angora Lake had the fewest number of organochlorine compounds detected of all lake samples. Dioxins and furans were not detected in SPMD samples from two sites in Lake Tahoe or from two tributary streams. The number of polycyclic aromatic hydrocarbon (PAH) compounds and their combined concentrations generally were higher in samples from Lake Tahoe than those from tributary streams. Areas of high-motorized boating activity at Lake Tahoe had the largest number and highest concentrations of PAH's. PAH compounds were detected in samples from SPMD's in four of six tributary streams during spring runoff, all tributary streams during baseflow conditions, and at all lake sites. The most commonly detected PAH's in tributary streams during spring runoff were phenanthrene, fluoranthene, pyrene, and chrysene, and during baseflow conditions were phenanthrene, 1-methylphenanthrene, diethylnaphthalene, and pyrene. Upper Truckee River, which has an urban area in its drainage basin, had the largest number and highest combined concentration of PAH's of all stream samples. Bottom-sediment from Lake Tahoe had detectable concentrations of p-cresol, a phenol, in all but one sample. A sample collected near Chambers Lodge contained phenol at an estimated concentration of 4 micrograms per kilogram (µg/kg). Bottom-sediment samples from tributary streams had no detectable concentrations of organochlorine or PAH compounds. Several compounds were detected in bottom sediment from Upper Angora Lake at high concentrations. These compounds and their concentrations were p , p' -DDD (10 µg/kg), p , p' -DDE (7.4 µg/kg), 2,6-dimethylnaphthalene (estimated at 190 µg/kg), pentachlorophenol (3,000 µg/kg), and p-cresol (4,400 µg/kg).

California, Nevada

Detecting earthquakes in noisy real-time GNSS data with deep learning for improved PGD magnitude estimation

To disseminate accurate and useful warnings, earthquake early warning (EEW) systems must quickly determine the size and location of an earthquake to estimate expected shaking. Traditional seismic‐based algorithms tend to underestimate the true magnitudes of large earthquakes, a phenomenon known as magnitude saturation. This limitation motivated the recent inclusion of Global Navigation Satellite Systems (GNSS) data into the U.S. Geological Survey’s ShakeAlert EEW system with the Geodetic First Approximation of Size and Time (GFAST) algorithm because GNSS data do not saturate with large ground motions. However, the noise levels of GNSS data are very high compared with traditional seismic data, which obscures P ‐wave arrivals and can result in less accurate magnitude estimations if displacement amplitudes are low, such as for lower magnitude earthquakes or large source–station distances. In this study, we develop a deep‐learning model that detects earthquakes in GNSS data and use the Ridgecrest, California, earthquake sequence as a case study to demonstrate how the model could act as a filter to reduce the amount of low‐quality data that enters an algorithm like GFAST. To preserve our limited real earthquake data for model inference, we generated a training dataset composed of >700,000 synthetic displacement waveforms. We combined the synthetic waveforms with real‐time GNSS noise to produce realistically noisy training waveforms and then tested our model on additional synthetic data and performed inference using the real data that were held back. We discuss the performance of our trained model on both the unseen synthetic data and real inference data. Our model can be used to selectively filter only high‐quality data where an earthquake signal is observed for input into an algorithm like GFAST (outperforming a simple signal‐to‐noise ratio–based filter) to reduce the error in GFAST’s real‐time earthquake magnitude estimations.

California

The value of electronic tagging and tracking studies for understanding fish–hypoxia interactions

Objective Hypoxia (i.e., low dissolved oxygen availability) is a natural phenomenon but can also be induced by human activities (e.g., nutrient enrichment from runoff). Given that dissolved oxygen is essential for aquatic life, periods of hypoxia tend to have negative consequences (e.g., sublethal disturbances, mortality) for most fishes. Extensive laboratory research has documented hypoxia thresholds and physiological and behavioral outcomes for a variety of freshwater and marine fishes and there is also an extensive body of fieldwork assessing population-level responses (e.g., survival, distribution). Yet, studying how individual fish respond to hypoxia in the wild has proved challenging; electronic tagging and tracking tools (e.g., biotelemetry, biologging) have made it easier to study individual responses to hypoxia and complement other tools like hydroacoustics that tend to focus on population-level responses. Methods We review what has been learned from contemporary studies that employ electronic tagging and tracking tools to understand how fish respond to hypoxia in the wild. Topics explored include identifying and validating hypoxia thresholds, habitat compression, connectivity, mortality, physiological and bioenergetic consequences, and extreme weather conditions. We also consider what we have learned about evaluating various management plans for hypoxia and reflect on how electronic tags have also been used in aquaculture systems and in hybrid studies that combine laboratory and field research. We highlight fishes in Lake Erie as a research narrative to demonstrate how electronic tagging and tracking have markedly improved our understanding of a longstanding hypoxia issue. Results Our synthesis revealed that electronic tagging and tracking have provided critical information on how fish respond to hypoxia in the field, revealing complex trade-offs and compensatory mechanisms as well as cryptic hypoxia-induced mortality. Beyond just illuminating space use and mortality, tags equipped with various sensors are revealing how fish deal with hypoxia in real time in terms of physiology, bioenergetics, and behavior. Conclusions As electronic tagging and tracking methods experience further innovation and are increasingly applied to understand the effects of hypoxia on fish, we expect more unanticipated findings about the effects of hypoxia on fish in all aquatic ecosystems, which will strengthen our ability to manage and mitigate hypoxia. Combining tools and approaches (e.g., lab and field) is perhaps the best way to generate comprehensive understanding.

Transactions of the American Fisheries Society

Evidence of mineral alteration in a salt marsh subterranean estuary: Implications for carbon and trace element cycling

Subterranean estuaries (STE) in salt marshes are biogeochemically active zones where interactions between terrestrial groundwater and seawater drive complex cycling of carbon and trace elements, influenced by mineral dissolution. These systems, characterized by fine-grained organic-rich peat overlying permeable coastal aquifers, play a crucial role as a blue carbon sink, yet their geochemical dynamics remain poorly understood. We investigated dissolved trace elements, carbon, silica, and radium isotopes in a salt marsh STE (Sage Lot Pond, Waquoit Bay, MA) over seasonal and annual cycles. Our results reveal that groundwater and estuarine water circulation through marsh peat and aquifer sediments leads to enrichments of dissolved organic and inorganic carbon (DOC and DIC), Si, Ba, and Mn, with variable source/sink behavior of Fe and net removal of U. Submarine groundwater discharge dominated Ba fluxes, whereas pore water drainage from marsh peat acted as the main sink for U and source of Si. Fe cycling was variable, with terrestrial Fe largely removed as groundwater passed through the STE, consistent with Fe-sulfide and amorphous phase formation. Radium isotope ratios identified two distinct subsurface flow pathways, influenced by metal-oxide cycling and organic matter breakdown. Si production was decoupled from DIC, suggesting Si originates from mineral alteration, whereas DIC results from both mineral weathering and microbial respiration. Silicate mineral alteration, coupled with marsh pore water drainage, accounts for up to 16% of annual DIC exports (66 g C m −2 y −1 ), highlighting the importance of STEs in coastal carbon and trace element cycling, especially as marshes face environmental change.

Massachusetts

Latest Pleistocene to 19th-century earthquakes on bending-moment reverse faults of the Seattle fault zone, Washington

Fault-related folds and their associated secondary faults play a critical yet often underrecognized role in accommodating strain and generating earthquakes in active fold-and-thrust belts. In the Seattle fault zone (SFZ), Washington, USA, we present new paleoseismic, geomorphic, and geophysical evidence for late Pleistocene and Holocene earthquakes on shallow, south-dipping secondary faults—the Lytle Beach and Vasa Park faults—that lie within the hanging wall of the greater SFZ and are on trend with the primary, blind Blakely Harbor fault. Our data show that these structures have ruptured independently, producing localized uplift and deformation at the surface, with the most recent event (RH2) likely occurring in the early nineteenth century. While a temporal overlap between the late Pleistocene RH1 and VP1 earthquakes raises the possibility of a ≥35 km rupture along the Blakely Harbor fault, structural and temporal evidence instead supports independent rupture on individual faults related to folding. We interpret these faults as bending-moment reverse faults that formed within a synclinal hinge zone of the main fault, reflecting mechanical and kinematic influences of the broader fault system. Combined with prior studies, our findings indicate that faulting related to folding dominates the mode of strain release within the SFZ since the late Pleistocene with more frequent earthquake recurrence (∼350 yr) over the past ∼2500 yr.

Washington

Utilizing hydrophones to detect streambed mobilization in the Wild and Scenic reach of the Rio Chama

This paper describes a study that deployed underwater acoustic sensors (hydrophones) to detect streambed mobilization in the Wild and Scenic reach of the Rio Chama, New Mexico. Fine sediment accumulation in the gravel‑cobble bed affects brown trout spawning habitat, and understanding incipient motion thresholds is essential for planning effective environmental flushing flows released from El Vado Dam. Two hydrophone stations were operated during 2021–2022, capturing audio data during a high‑flow pulse in late 2021. Acoustic processing techniques, including spectral analysis and threshold‑based impact detection, were used to identify sediment‑generated noise associated with coarse sediment transport. Results indicate detectable sediment mobilization during the high‑flow pulse, demonstrating hydrophones’ potential as a passive monitoring tool for environmental flow planning and sediment‑management decision support.

Conference Paper

Turbidite correlation for paleoseismology

Marine turbidite paleoseismology relies on the assumption of synchronous triggering of turbidity currents by earthquake shaking to infer rupture extent and recurrence. Such inference commonly depends on age dating and correlation of the physical stratigraphy of deposits carried by turbidity currents (i.e., turbidites) across great distances. Along the Cascadia subduction zone, which lies offshore the Pacific Northwest, USA, turbidite facies in core photographs, X-ray computed tomography images, and magnetic susceptibility (MS) data exhibit differences in character over relatively short distances, which implies that not all deposits can be correlated with confidence. Thus, subjective correlation based on expected similarity over great distances and weak age constraints does not independently support paleoseismic models. We present a new method for correlating turbidites along the Cascadia margin that can yield a more objective and repeatable stratigraphic framework to underpin earthquake recurrence. We use dynamic time warping to correlate MS logs and measure correlation coefficients of core pairs to evaluate correlation strength. We then compare these measures to a distribution of correlation coefficients of randomly generated turbidite sequences and find that only a small number of core pairs can be correlated more confidently than randomly stacked turbidites. This methodology promises a more robust correlation strategy for future stratigraphic studies.

Oregon, Washington

Assessing legacy nitrogen in groundwater using numerical models of the Long Island aquifer system, New York

Nitrogen transported along groundwater flow paths in coastal aquifers can contribute substantially to nitrogen loading into surface water receptors, particularly in hydrologic systems dominated by groundwater discharge. Nitrogen entrained in the aquifer is a function of land use and associated nitrogen sources at the time of groundwater recharge, which may differ considerably from present-day sources. Legacy nitrogen can result in substantial discrepancies between observed present-day nitrogen loading to surface water receptors and loading estimated from present-day sources. Additionally, legacy nitrogen can continue to discharge into surface waters after nitrogen mitigation actions have been undertaken. Here, we use a numerical modeling framework to compare three methods of estimating time-varying historical nitrogen loads to four water bodies (receptors) on eastern Long Island, New York. The methods span a range of data requirements and process complexity, from instantaneous receptor loads calculated from steady-state groundwater contributing areas, to transient loads estimated by explicitly simulating legacy groundwater nitrogen transport over a century with large changes in nitrogen sources and hydrologic conditions. The effects of legacy nitrogen on estimated receptor loads varied temporally and spatially within the study area. Depending on antecedent nitrogen inputs and hydrologic conditions, historical annual nitrogen loads estimated from transient simulations accounting for legacy nitrogen can be quite similar (<10% difference) or substantially different (±100%) from those estimated from simpler instantaneous methods. Continued input of present-day nitrogen sources using methods that account for legacy nitrogen results in asymptotic increases in receptor nitrogen loads over time, indicating that simulated present-day receptor nitrogen loads are not in equilibrium with present-day inputs. For these receptors in disequilibrium, models simulating transient groundwater nitrogen transport could be used to account for legacy nitrogen lag times to help resource managers evaluate the potential effectiveness of proposed nitrogen mitigation actions.

EarthArXiv

Surface-wave relocation and characterization of the October 2023 tsunamigenic seismic unrest near Sofugan volcano, Izu Islands, Japan

A moderate-magnitude earthquake swarm occurred in the remote Izu Islands region of Japan between October 1 and 8, 2023. The swarm included 151 shallow earthquakes cataloged by the U.S. Geological Survey, which notably included a roughly 2.5-hr episode of 15 successive magnitude (M) < 5.5 earthquakes. Origin times were coincident with regionally recorded tsunami waves, but tsunamigenesis for moderate-magnitude earthquakes is uncommon, indicating that volcanic activity generated the ocean displacements. Leveraging a surface-wave relative relocation approach, we estimate precise epicentroid locations for the remote swarm. Final epicentroids and caldera analogs indicate a three-stage model to explain swarm activity: (a) caldera pressurization due to magma intrusion, (b) depressurization via dike propagation away from the caldera, and (c) eruption corresponding with caldera reactivation either by collapse or additional intrusion.

Sofugan volcano, Izu Islands

Application of non-stationary shear-wave velocity randomization approach to predict 1D seismic site response and its variability at two downhole array recordings

Accounting for uncertainties in seismic site response is crucial to improving the performance of one-dimensional (1D) ground response analyses (GRAs) at downhole array recording sites. In addition to site effects, uncertainties in 1D-GRAs can also be contributed from the seismic source and/or path. Though often representing not more than one percent of the distance (path) from the source, site conditions are known to have an enormous influence on ground shaking. In this study, we focus on the site shear-wave velocity ( V S ) structure, which is the main ingredient for estimating the variability of site response. As such, V S can manifest aleatory uncertainties related to the effects of small-scale spatial heterogeneities within the near surface, thus V S can substantially modify ground shaking during earthquakes. We apply a novel V S randomization approach to propagate the small-scale heterogeneities of V S to estimate seismic site response within a non-stationary probabilistic framework. The randomization approach generates samples of V S profiles that are used to perform several 1D-GRAs and obtain an averaged site response and related variability. The proposed method is implemented on data recorded at two downhole array sites with different subsurface soil conditions: a soft soil site on Treasure Island (California, United States of America) and a rock outcrop site in Cadarache (South-East France). We show that synthetic surface-to-borehole transfer functions from 1D-GRAs provide an acceptable fit to the empirical transfer functions from low-motion earthquake records and succeed in reproducing most of the site-specific seismic response variability. The remaining mismatch between transfer functions is likely due to insufficient precision on the seismic bedrock and the impedance contrast. The variability in site response is discussed with emphasis on the role of V S small-scale heterogeneities, attenuation, and input motion incidence angle in ground motion variability for the site and soil conditions at both locations.

California

Earthquake magnitude and source parameter estimation with a distributed acoustic sensing dataset in the Gorda subduction zone

Distributed acoustic sensing (DAS) systems offer a cost‐effective way to create large‐scale strainmeter arrays for seismological applications using fiber‐optic cables. DAS‐based strain measurements are known to be influenced by various factors, bringing into question their general reliability for accurate earthquake characterization. A 15‐km‐long DAS deployment in northern California was operational within 3 days of the 2022 M w 6.4 Ferndale earthquake and ran continuously throughout the aftershock sequence. We utilize these aftershock data to validate DAS‐based strain measurements in two ways. We first test the accuracy of DAS‐based magnitude estimates from peak dynamic strains by comparing them with magnitude and attenuation scaling relations derived independently from traditional borehole strainmeter (BSM) data. We demonstrate that DAS‐based magnitudes are comparable to BSM‐based magnitudes when corrections for variations in site response along the fiber‐optic cable are properly made. Magnitude errors are spatially correlated, potentially because of factors such as finite‐fault effects (e.g., stress drop) or more complex, unmodeled path attenuation or because of wave propagation effects in heterogeneous media. We then apply more advanced source characterization methodology to the DAS data using a time‐domain empirical Green’s function (EGF) deconvolution approach to measure details of the moment rate history. The EGF approach using DAS data depends on careful treatment of distorting factors such as anthropogenic sources of noise and optical phase wrapping but successfully isolates source spectra for moderate‐magnitude earthquakes: source spectral ratios obtained from DAS data, broadband seismometer data, and BSM data in the same region show consistent results, revealing differences in directivity and spectral shape among earthquakes. Although further research is needed to refine source‐time‐function estimation techniques for DAS data, particularly for larger magnitude events, these case studies demonstrate the clear potential of DAS for earthquake source characterization.

California

Archean to Mesozoic–Cenozoic seismic crustal structure: Implications for geological and biological evolution

We use >4500 measurements of crustal structure to investigate the seismic structure of continental crust, Archean to Mesozoic–Cenozoic. The mean crustal thickness of continents, including their margins, is 36.5 km. We find that Archean, Paleoproterozoic, and Mesoproterozoic crust have similar mean crustal thickness (41 km), seismic velocities, Vp/Vs ratio, and density. Crusts of these ages span 3 Ga, from 4.0 to 1.0 Ga, and their similarity of physical properties (thickness, density, and seismic velocities) suggests that the process of crustal formation may have been similar during this time period, which covers 66% of Earth's history. Neoproterozoic crustal properties differ significantly from Mesoproterozoic and older crusts. The mean thickness of Neoproterozoic crust is 32 km, some 9 km thinner than the mean thickness of Archean, Paleoproterozoic, and Mesoproterozoic crust. A lithospheric root with a thickness of 150–200 km underlies Archean, Paleoproterozoic, and Mesoproterozoic crusts, and this root resists lithospheric rifting and crustal extension and thinning. Based on these observations, particularly the lithospheric thickness, we conclude that Archean, Paleoproterozoic, and Mesoproterozoic lithosphere are unique and together form the stable cratonic nuclei, defined as the thick (150–250 km), long-lived cores of continents. Higher mantle temperatures during the Archean, Paleoproterozoic, and Mesoproterozoic may have played a key role in the formation of the thick lithospheric roots. The second key finding is that the similarities of mean seismic properties indicate that the process of crustal formation operating in the Archean continued during the Paleoproterozoic and Mesoproterozoic. The thin (mean value < 135 km) lithospheric root beneath Neoproterozoic and younger crust may be related to the steady decrease in mantle temperature through time. Neoproterozoic and Paleozoic crust have similar physical properties, and these eras are characterized by pronounced biodiversification, including the renowned Garden of Ediacara, the Cambrian Explosion, and the Great Ordovician Biodiversification. Mesozoic–Cenozoic crust is the most diverse and reflects the current tectonic and magmatic processes of crustal formation.

Book chapter

Central Valley Hydrologic Model version 2 (CVHM2): Decision support tool for groundwater and land subsidence management

The San Joaquin Valley (SJV) of California is one of the world’s most productive agricultural regions. Reliance on groundwater has led to some of the greatest rates of human-induced land subsidence in the world in the 20th century, as well as more recently. The United States Geological Survey (USGS) has recently developed an integrated surface–subsurface hydrologic model, the Central Valley Hydrologic Model 2 (CVHM2), that represents the major components of the hydrologic system of California’s Central Valley. In this study, CVHM2 was applied as a decision support tool while simulating various management strategies to mitigate the land subsidence caused by the extraction of groundwater. CVHM2 was extended through to 2073 and applied to simulate management scenarios in terms of three primary drivers and their impact on subsidence along the Delta–Mendota Canal (DMC), a critical piece of infrastructure in the western SJV. The drivers considered were agricultural water demands, managed aquifer recharge (MAR), and changes in future climate. The results show that future subsidence is most sensitive to water demands, second most sensitive to future changes in climate, and relatively insensitive to MAR when it is applied as a surface application in the western SJV. However, we demonstrate via proof-of-concept scenarios that the MAR is capable of arresting subsidence when implemented via injection below the Corcoran Clay Member of the Tulare Formation instead of as a surface application. We also examine the uncertainty that is the result of climate variability and how to use the tool to identify the most appropriate strategies to constrain future subsidence to acceptable levels.

California

Tringa flavipes (Lesser Yellowlegs) from separate breeding sites subdivides the Prairie Pothole Region in space and time during southbound migration

Some staging regions support multiple groups of the same migratory species, each of which may use the region differently. Characterizing the ways, in which separate groups use such regions can therefore help to identify vulnerabilities during this sensitive period of the annual cycle. The Prairie Pothole Region (PPR) is a massive wetland complex in the northern Great Plains of North America used by ∼11 million shorebirds during migration. The PPR has been heavily modified by agriculture and is experiencing varied effects of global climate change, threatening the health of the shorebirds that rely on it. Here, we used 6 seasons of southbound tracking data of Tringa flavipes (Lesser Yellowlegs)—a long-distance migratory shorebird species with an estimated population decline of 63% over the last 4 decades—from 9 sites across their breeding range to explore differences in migratory behavior within this important staging region. We found that 75% of tracked individuals used the region during southbound migration, and T. flavipes from different breeding sites detoured 110–875 km from their most direct migratory route to access the PPR. Individuals that arrived later stayed longer and made more stops within the region than those that arrived early. Individuals originating from different breeding sites also displayed spatial and temporal segregation within the region: T. flavipes from southwest and central Alaska relied heavily on the northwestern PPR, while those from Canada used the central and southeastern portions of the PPR. Finally, timing of use varied among groups, but the southeastern PPR became increasingly important over the course of the southbound migratory window, as other wetlands likely dried out. Our study highlights the portions of the PPR of critical importance to migrating T. flavipes and the diversity of ways, in which different groups from within the same species can use a single staging region.

Alaska, Manitoba, Northwest Territories, Ontario,

Shallow hydrogeologic framework of the Tully Valley mudboil area, Onondaga County, New York

Mudboils have been documented in the Tully Valley in southern Onondaga County, New York, since the late 1890s. Sediment-laden water from the mudboils flows into Onondaga Creek, which empties into Onondaga Lake at Syracuse 15 miles to the north. Turbidity from the mudboils has degraded the water quality of Onondaga Creek despite a series of mitigation efforts that began in the early 1990s. Turbidity mitigation actions presently (2025) being considered include creek relocation and offline sediment settling. In support of these proposed actions during 2021–23, the U.S. Geological Survey, in cooperation with the New York State Department of Environmental Conservation, U.S. Environmental Protection Agency, Onondaga Nation, Onondaga Environmental Institute, and Central New York Regional Planning and Development Board, collected and analyzed geologic, hydrologic, geophysical, and geotechnical data to characterize the shallow hydrogeology along four proposed creek-relocation paths and in the proposed offline settling basin area. The investigation indicated that the four proposed creek-relocation paths, two east of Onondaga Creek and two west of Onondaga Creek, are underlain by sediments including muck, alluvium, mudboil deposits, alluvial-fan sand and gravel, and lacustrine fines. The proposed excavations would penetrate partially to fully saturated conditions: generally, the water table is shallow near the creek and deep on the alluvial fans. The shallowest excavation, about 5 feet below land surface, would be near the creek and primarily in alluvium, and the deepest excavation, as much as 30 feet below land surface, would be in the alluvial-fan deposits. Brackish waters would be penetrated by proposed channel excavations on the eastern side of Onondaga Creek in an area downgradient from a potentially leaking historical salt-exploration borehole and near the main mudboil area. Excavation in these areas likely would provide a continuous source of brackish groundwater to the relocated creek. Proposed channel excavations of muck, soft to very soft lacustrine fines, and mudboil-type sediments in mudboil and suspected mudboil areas would pose an excavation and slope stability challenge and would have the greatest potential to create new mudboils. Proposed channel excavations below the water table on the Rattlesnake Gulf and Rainbow Creek alluvial fans would intercept groundwater and make the constructed streambank susceptible to seepage-induced slope instability. The substantial water-level fluctuation in the sediments of both alluvial fans would aggravate the stability condition. In addition, excavation on the Rattlesnake Gulf alluvial fan would have the potential to affect water-supply springs at the toe of the fan. The proposed offline settling basin area is in the northern part of the Rattlesnake Gulf alluvial fan. Natural and man-made diversions of Rattlesnake Gulf have resulted in saturated conditions in the general area of the proposed basin. The proposed offline settling basin would be excavated in, and berms would be constructed on, alluvial-fan deposits and lacustrine fines. In the proposed basin area, the alluvial deposits overlying the lacustrine fines are less than 10 feet thick. Excavation, berm construction, and loading of the saturated, soft to very soft lacustrine fines may be problematic and require soil strengthening.

New York

3D Converted wave reverse time migration imaging

We describe a newly developed method for recovering high-resolution images of seismic discontinuities, such as subducting slabs, in 3D. Our method makes use of converted S → P or P → S waves observed by dense arrays of seismometers to infer the locations and relative strengths of seismic discontinuities at depth in a target region. Observed direct and converted waves are backpropagated to their times of origin. The time-reversed wavefield is then separated into its constituent P and S components via the Helmholtz decomposition, and those separated wavefields are used to compute imaging functions that characterize the locations and relative strengths of seismic discontinuities. Imaging functions may be designed to use either S → P or P → S waves, so that users can target those arrivals expected to be most dominant in a given dataset. We have previously demonstrated the efficacy of our method in two dimensions, and we now present a 3D implementation of our technique which addresses the significant computational challenges posed by the size of volumetric wavefield data in three dimensions. Through a series of synthetic examples, we demonstrate that our method is capable of recovering the fine scale structure of a subducting slab given realistic station coverage and earthquake sources. We investigate optimal seismic station geometries for our technique and explore image interpretability in regions with poor data coverage. We find that linear station geometries yield more optimal, interpretable imaging functions than collections of small arrays can. We also show that our method can successfully recover bothS → P or P → S images when realistic shear earthquake sources are used, and we explore the additional computational challenges presented by the high frequency content of S waves. Our results demonstrate the potential for our technique to recover high-resolution information about subducting slabs in real-world regions, given that relatively sparse seismic arrays with only approximately 100 stations are capable of recovering interpretable imaging functions from just a few realistic earthquake sources for multiple discontinuities at significant depth in an area of approximately 400~sq~km.

Seismica

Evaluation of nutrient, alkalinity, and acid-neutralizing capacity stabilities in water samples analyzed by the U.S. Geological Survey National Water Quality Laboratory, 2023–24

The U.S. Geological Survey evaluated the stability of water-sample chemical analysis of nutrient, alkalinity, and acid-neutralizing capacity constituents with respect to the duration between sample collection and laboratory analysis, also known as the sample holding time. A study began in the spring of 2023 to evaluate the sample stability, between 2 and 180 days after sample collection, of the chemical properties and chemical constituents of alkalinity as calcium carbonate, filtered; acid-neutralizing capacity as calcium carbonate, unfiltered; total ammonia as nitrogen, filtered; total ammonia plus organic nitrogen as nitrogen, filtered and unfiltered; nitrite as nitrogen, filtered; nitrate plus nitrite as nitrogen, filtered; total nitrogen, filtered and unfiltered; orthophosphate as phosphorous, filtered; and total phosphorus as phosphorus (filtered and unfiltered) in water. Both surface water and groundwater matrices were represented. Sample instability varied by observed property and matrix; therefore, providing general guidance for sample holding time is not possible based on matrices alone. No correlations between field measurements of sample characteristics and sample instability were observed. Although observations for some properties indicate sample stability that exceeds the recognized U.S. Geological Survey National Water Quality Laboratory method holding times, this is not necessarily the case for matrices and seasonal characteristics that were not investigated. Based on the limited number of six sample sources used in this study, some patterns emerge for the 12 observed properties studied. Five observed properties generally indicate stability for as many as 180 days after sampling (total nitrogen as nitrogen, both filtered and unfiltered; orthophosphate as phosphorus, filtered; and phosphorus as phosphorus, both filtered and unfiltered). Other observed properties indicate stability for as many as 180 days for some matrices, but not for others. Finally, some observed properties indicate instability well before 180 days.

Scientific Investigations Report