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USGS2017

Automated cropland mapping of continental Africa using Google Earth Engine cloud computing

The automation of agricultural mapping using satellite-derived remotely sensed data remains a challenge in Africa because of the heterogeneous and fragmental landscape, complex crop cycles, and limited access to local knowledge. Currently, consistent, continent-wide routine cropland mapping of Africa does not exist, with most studies focused either on certain portions of the continent or at most a one-time effort at mapping the continent at coarse resolution remote sensing. In this research, we addressed these limitations by applying an automated cropland mapping algorithm (ACMA) that captures extensive knowledge on the croplands of Africa available through: (a) ground-based training samples, (b) very high (sub-meter to five-meter) resolution imagery (VHRI), and (c) local knowledge captured during field visits and/or sourced from country reports and literature. The study used 16-day time-series of Moderate Resolution Imaging Spectroradiometer (MODIS) normalized difference vegetation index (NDVI) composited data at 250-m resolution for the entire African continent. Based on these data, the study first produced accurate reference cropland layers or RCLs (cropland extent/areas, irrigation versus rainfed, cropping intensities, crop dominance, and croplands versus cropland fallows) for the year 2014 that provided an overall accuracy of around 90% for crop extent in different agro-ecological zones (AEZs). The RCLs for the year 2014 (RCL2014) were then used in the development of the ACMA algorithm to create ACMA-derived cropland layers for 2014 (ACL2014). ACL2014 when compared pixel-by-pixel with the RCL2014 had an overall similarity greater than 95%. Based on the ACL2014, the African continent had 296 Mha of net cropland areas (260 Mha cultivated plus 36 Mha fallows) and 330 Mha of gross cropland areas. Of the 260 Mha of net cropland areas cultivated during 2014, 90.6% (236 Mha) was rainfed and just 9.4% (24 Mha) was irrigated. Africa has about 15% of the world’s population, but only about 6% of world’s irrigation. Net cropland area distribution was 95 Mha during season 1, 117 Mha during season 2, and 84 Mha continuous. About 58% of the rainfed and 39% of the irrigated were single crops (net cropland area without cropland fallows) cropped during either season 1 (January-May) or season 2 (June-September). The ACMA algorithm was deployed on Google Earth Engine (GEE) cloud computing platform and applied on MODIS time-series data from 2003 through 2014 to obtain ACMA-derived cropland layers for these years (ACL2003 to ACL2014). The results indicated that over these twelve years, on average: (a) croplands increased by 1 Mha/yr, and (b) cropland fallows decreased by 1 Mha/year. Cropland areas computed from ACL2014 for the 55 African countries were largely underestimated when compared with an independent source of census-based cropland data, with a root-mean-square error (RMSE) of 3.5 Mha. ACMA demonstrated the ability to hind-cast (past years), now-cast (present year), and forecast (future years) cropland products using MODIS 250-m time-series data rapidly, but currently, insufficient reference data exist to rigorously report trends from these results.

ISPRS Journal of Photogrammetry and Remote Sensing↗

USGS2019

Integrating behavior and physiology into strategies for amphibian conservation

The amphibian decline crisis has been challenging to address because of the complexity of factors—and their multitude of interactive effects—that drive this global issue. Dissecting such complexity could benefit from strategies that integrate multiple disciplines and address the mechanistic underpinnings of population declines and extirpations. We examine how the disciplines of behavior and physiology could be used to develop conservation strategies for amphibians and identify eight research gaps that provide future directions for the emerging fields of conservation behavior and conservation physiology. We present two case studies on imperiled salamanders that show how studies of behavior and physiology may support amphibian conservation efforts. We found several applications of stress physiology to amphibian conservation, but long-term studies are needed to understand how stress ultimately affects individual fitness and population resilience. Additionally, multiple measures of physiological health are needed to provide a more holistic assessment of an individual’s overall condition. Previous behavioral and physiological studies have been instrumental for understanding how amphibians respond to habitat modification, pathogens and parasites, contaminants, and invasive species. Some behavior-based approaches to mitigating invasive species issues have been successful in short-term studies with individual species. However, widespread application of these tactics has not yet been integrated into conservation and management strategies for ecologically-similar species. A diversity of modeling approaches has enhanced understanding of how climate change may impact amphibian populations, but model predictions need empirical tests to provide conservation managers with workable approaches to multiple perturbations associated with global environmental change. We illustrate that behavior and physiology can have broad utility for amphibian conservation, but evidence is scant that such studies have actually been used to inform strategies for amphibian conservation and management.

Frontiers in Ecology and Evolution↗

USGS2023

A novel approach to assessing natural resource injury with Bayesian networks

Quantifying the effects of environmental stressors on natural resources is problematic because of complex interactions among environmental factors that influence endpoints of interest. This complexity, coupled with data limitations, propagates uncertainty that can make it difficult to causally associate specific environmental stressors with injury endpoints. The Natural Resource Damage Assessment and Restoration (NRDAR) regulations under the Comprehensive Environmental Response, Compensation, and Liability Act and Oil Pollution Act aim to restore natural resources injured by oil spills and hazardous substances released into the environment; exploration of alternative statistical methods to evaluate effects could help address NRDAR legal claims. Bayesian networks (BNs) are statistical tools that can be used to estimate the influence and interrelatedness of abiotic and biotic environmental variables on environmental endpoints of interest. We investigated the application of a BN for injury assessment using a hypothetical case study by simulating data of acid mine drainage (AMD) affecting a fictional stream-dwelling bird species. We compared the BN-generated probability estimates for injury with a more traditional approach using toxicity thresholds for water and sediment chemistry. Bayesian networks offered several distinct advantages over traditional approaches, including formalizing the use of expert knowledge, probabilistic estimates of injury using intermediate direct and indirect effects, and the incorporation of a more nuanced and ecologically relevant representation of effects. Given the potential that BNs have for natural resource injury assessment, more research and field-based application are needed to determine their efficacy in NRDAR. We expect the resulting methods will be of interest to many US federal, state, and tribal programs devoted to the evaluation, mitigation, remediation, and/or restoration of natural resources injured by releases or spills of contaminants

Integrated Environmental Assessment and Management↗

USGS2026

A simplified two-station approach for modeling metabolism in dam tailwaters subject to diel flow variation

Tailwaters are ubiquitous and highly managed ecosystems whose food webs often rely disproportionately on autochthonous energy. In situ continuous dissolved oxygen data are increasingly being used to estimate gross primary productivity and ecosystem respiration in rivers, but this approach is complicated in tailwaters, where upriver discontinuities (i.e., dams) violate commonly employed one-station approaches. In such cases, two-station metabolism models can be applied, although substantial diel variation in flow (a common outcome of hydropower production) requires more complex treatment of water parcel travel times. Here, we present a new two-station metabolism model that allows estimation of reach-scale gross primary productivity and ecosystem respiration in streams and rivers that experience within-day variation in flow. Our approach simplifies two-station variable flow model implementation compared to previous efforts. We apply our model to a 6-yr dissolved oxygen time series and use Bayesian inference to estimate daily gross primary productivity, ecosystem respiration, and gas exchange velocity ( k 600 ) for a ~12-km reach of the Colorado River downriver of Glen Canyon Dam. We compare our model's performance to a more mechanistically detailed and computationally intensive Eulerian dynamic flow model and also to a widely-used one-station model that uses assumptions of reach uniformity that are often strongly violated in tailwaters. These comparisons show that our metabolism estimates conform with output from the more detailed dynamic flow model and that the one-station approach deviates substantially from both two-station approaches. Our new stream metabolism model can help resolve a fundamental analytical impediment in tailwater ecology.

Arizona↗

USGS2019

Flexible timing of annual movements across consistently used sites by Marbled Godwits breeding in Alaska

The study of avian movement has detailed a spectrum of strategies for the timing and use of sites throughout the annual cycle, from near randomness to complete consistency. New tracking devices now permit the repeated tracking of individual animals throughout the annual cycle, detailing previously unappreciated levels of variation within migratory systems. Godwits (genus Limosa ) have featured prominently in studies of avian migration, but information derived from repeated tracking of individuals is limited. The Marbled Godwit subspecies Limosa fedoa beringiae breeds on the central Alaska Peninsula, and little is known about basic aspects of its migration ecology, including the repeatability with which this population times its annual migratory movements or uses migratory and nonbreeding sites. To address these questions, we equipped 9 Marbled Godwits breeding at a site near Ugashik, Alaska, with solar-powered satellite transmitters. We tracked individuals from July, 2008 to October, 2015 and obtained repeat migratory tracks from 5 of these birds. Individuals exhibited high fidelity to breeding, nonbreeding, and migratory stopover sites across years, but in contrast to congeners that conduct consistently timed, long, nonstop migrations, beringiae Marbled Godwits exhibited low levels of individual- or population-level repeatability in the timing of migratory movements. Their relatively short migrations may enable the integration of local environmental cues, potentially facilitating individual flexibility in the timing of annual migratory movements. Curiously, if local cues ultimately drive the timing of Marbled Godwit migratory movements, the population’s relatively constrained distribution during both the breeding and nonbreeding season should serve to synchronize birds if they are responding to similar cues. That our sample of Marbled Godwits nonetheless exhibited within- and between-year variation in the timing of their migratory movements suggests a complex integration of annually variable internal and external cues.

The Auk↗

USGS2022

Effects of an early mass-flowering crop on wild bee communities and traits in power line corridors vary with blooming plants and landscape context

Context Power line corridors have been repeatedly assessed as habitat for wild bees; however, few studies have examined them as bee habitat relative to nearby crop fields and surrounding landscape context. Objectives We surveyed bee communities in power line corridors near to and isolated from lowbush blueberry fields in two landscape contexts in Maine, U.S.A. We examined the influences of blooming plant abundance and diversity and bee life-history traits including sociality, nesting preference, and body size. Methods We surveyed wild bees and blooming plants in power line corridors from 2013 to 2015. We calculated landscape composition surrounding sites at multiple scales and gathered bee trait information from the literature. We assessed differences in bee communities owing to landscape context with generalized linear models. Results We collected 125 wild bee species and observed a rare plant-pollinator relationship within power line corridors. We found greater bee abundance and species richness throughout a complex, resource-rich landscape, while mass-flowering lowbush blueberry fields enhanced bee species richness only in a simple, resource-poor landscape. Landscape composition and blooming plant diversity varied with landscape context, though only landscape composition influenced bee communities. Solitary and ground-nesting species were more sensitive to landscape context than social or cavity-nesting species. Conclusions Power line corridors provide crucial refugia for crop pollinating wild bees in agricultural landscapes with resource-poor natural habitat, while bees may selectively forage in power line corridors within agricultural landscapes containing resource-rich natural habitat. We found high-quality forage within corridors; quantifying nesting resources could clarify corridor use by wild bees.

Maine↗

USGS2015

Does the stress-gradient hypothesis hold water? Disentangling spatial and temporal variation in plant effects on soil moisture in dryland systems

The nature of the relationship between water limitation and facilitation has been one of the most contentious debates surrounding the stress-gradient hypothesis (SGH), which states that plant-plant interactions shift from competition to facilitation with increasing environmental stress. We take a closer look at the potential role of soil moisture in mediating plant-plant interaction outcomes by assessing effects of climate and soil texture on plant modulation of soil moisture. Using an empirically-parameterized soil moisture model, we simulated soil moisture dynamics beneath shrubs and in un-vegetated coarse and fine soils for 1000 sites in the Western United States with <700 mm mean annual precipitation. This threshold reflects the transition from dryland (<600 mm precipitation) to mesic ecosystems. Positive effects of shrubs on shallow soil moisture (i.e. the difference between shrub and interspace soil moisture) decreased along the aridity gradient when long-term average conditions were considered, contrary to expectations based on the SGH. Negative effects of shrubs on deeper soil moisture also increased with aridity. However, when extreme years were considered, positive effects of shrub on soil moisture were greatest at intermediate points along the spatial aridity gradient, consistent with a hump-backed model of plant-plant interactions. When viewed through time within a site, shrub effects on shallow soil moisture were positively related to precipitation, with more complex relationships exhibited in deeper soils Taken together, the results of this simulation study suggest that plant effects on soil moisture are predictable based on relatively general relationships between precipitation inputs and differential evaporation and transpiration rates between plant and interspace microsites that are largely driven by temperature. In particular, this study highlights the importance of differentiating between temporal and spatial variation in weather and climate, respectively, in determining plant effects on available soil moisture. Rather than focusing on the somewhat coarse-scale predictions of the SGH, it may be more beneficial to explicitly incorporate plant effects on soil moisture into predictive models of plant-plant interaction outcomes in drylands.

Functional Ecology↗

USGS2000

Sensitivity of species habitat-relationship model performance to factors of scale

Researchers have come to different conclusions about the usefulness of habitat-relationship models for predicting species presence or absence. This difference frequently stems from a failure to recognize the effects of spatial scales at which the models are applied. We examined the effects of model complexity, spatial data resolution, and scale of application on the performance of bird habitat relationship (BHR) models on the Craig Mountain Wildlife Management Area and on the Idaho portion of the U.S. Forest Service's Northern Region. We constructed and tested BHR models for 60 bird species detected on the study areas. The models varied by three levels of complexity (amount of habitat information) and three spatial data resolutions (0.09 ha, 4 ha, 10 ha). We tested these models at two levels of analysis: the site level (a homogeneous area <0.5 ha) and cover-type level (an aggregation of many similar sites of a similar land-cover type), using correspondence between model predictions and species detections to calculate kappa coefficients of agreement. Model performance initially increased as models became more complex until a point was reached where omission errors increased at a rate greater than the rate at which commission errors were decreasing. Heterogeneity of the study areas appeared to influence the effect of model complexity. Changes in model complexity resulted in a greater decrease in commission error than increase in omission error. The effect of Spatial data resolution on the performance of BHR models was influenced by the variability of the study area. BHR models performed better at cover-type levels of analysis than at the site level for both study areas. Correct-presence estimates (1 - minus percentage omission error) decreased slightly as number of species detections increased on each study area. Correct-absence estimates (1 - percentage commission error) increased as number of species detections increased on each study area. This suggests that a large number of detections may be necessary to achieve reliable estimates of model accuracy.

Idaho↗

USGS2025

Invasive African clawed frogs ( Xenopus laevis ) in Washington State: Status, response efforts, and lessons learned

The African clawed frog (ACF, Xenopus laevis ), which is indigenous to sub-Saharan Africa, is an aquatic invasive species known to have severe ecological impacts on native fauna when introduced into non-endemic regions. In 2015, ACFs were detected in Washington State, U.S. for the first time, and the species is now documented at three cities across western Washington: Lacey, Bothell, and Issaquah. We cataloged the known ACF occurrences, early management efforts, biological data about the frogs, and status of these invasive populations at the three sites from 2015–2023. The ACFs appear to be established in at least three watersheds in the Puget Sound region despite substantial effort at eradicating them at one site. Presence of ACFs in watersheds that lack surface connectivity implies independent introduction events, and the capture of frogs in multiple subbasins in the same watershed may reflect the potential for further spread. Because the ACF is nocturnal and otherwise behaviorally and visually highly cryptic, other established populations may go undetected. Where the ACFs are largely confined to stormwater ponds — as many of our current observations suggest — eradication may still be possible, though a substantial, focused effort would be required. In addition, significant refinement of eradication approaches will be needed to ensure effectiveness in topographically and vegetatively complex Pacific Northwest aquatic environments.

Washington↗

USGS2012

Foraging ecology of least terns and piping plovers nesting on Central Platte River sandpits and sandbars

Federally listed least terns ( Sternula antillarum ) and piping plovers ( Charadrius melodus ) nest on riverine sandbars on many major midcontinent river systems. On the Central Platte River, availability of sandbar habitat is limited, and both species nest on excavated sandpits in the river's floodplain. However, the extent to which sandpit-nesting birds use riverine habitats for foraging is unknown. We evaluated use of foraging habitats by least terns and piping plovers by collecting data on movements, behavior, foraging habitat, and productivity. We radiomarked 16 piping plovers and 23 least terns in 2009-2010 and monitored their movements using a network of fixed telemetry dataloggers. Piping plovers were detected primarily by the datalogger located in their nesting sandpit, whereas least terns were more frequently detected on dataloggers outside of the nesting sandpit. Telemetry data and behavioral observations showed that least terns tended to concentrate at the Kearney Canal Diversion Gates, where forage fish were apparently readily available. Fish sampling data suggested that forage fish were more abundant in riverine than in sandpit habitats, and behavioral observations showed that least terns foraged more frequently in riverine than in sandpit habitats. Piping plovers tended to forage in wet substrates along sandpit shorelines, but also used dry substrates and sandpit interior habitats. The greater mobility of least terns makes a wider range of potential foraging habitats available during brood rearing, making them able to exploit concentrations of fish outside the nesting colony. Thus, our data suggest that different spatial scales should be considered in managing nesting and foraging habitat complexes for piping plovers and least terns.

Nebraska↗

USGS2009

Review of fish diversity in the Lake Huron basin

Lake Huron has a rich aquatic habitat diversity that includes shallow embayments, numerous tributaries, shallow mid-lake reef complexes, archipelagos, and profundal regions. These habitats provide support for warm, cool, and cold water fish communities. Diversity of fishes in Lake Huron reflects post-glaciation colonization events, current climate conditions, accidental and intentional introductions of non-indigenous species, and extinctions. Most extinction events have been largely associated with habitat alterations, exploitation of fisheries, and interactions with non-indigenous species. The most recent historical survey of extirpated and imperiled species conducted in the late 1970s identified 79 fish species in Lake Huron proper and about 50 additional species in tributaries. Of those 129 species, 20 are now considered extirpated or imperiled. Extirpated species include Arctic grayling, paddlefish, weed shiner, deepwater cisco, blackfin cisco, shortnose cisco, and kiyi. Six species have declined appreciably due to loss of clear-water stream habitat: the river redhorse, river darter, black redhorse, pugnose shiner, lake chubsucker, redside dace, eastern sand darter, and channel darter. While numerous agencies, universities, and other organizations routinely monitor nearshore and offshore fish distribution and abundance, there is a need for more rigorous examination of the distribution and abundance of less-common species to better understand their ecology. This information is critical to the development of management plans aimed at ecosystem remediation and restoration.

Conference Paper↗

USGS2023

Evaluating the spatial and temporal distribution and ecology of Bighead and Silver Carp and native fishes of the lower Red River basin

We investigated the spatial and temporal distribution of Bighead Carp and Silver Carp (hereafter Carp) in the lower Red River basin of Arkansas. Our study objectives were: 1) determine the spatial and temporal extent of Bighead and Silver Carp in the Red River basin of Arkansas; 2) determine habitat associations of large river fish assemblages; and 3) summarize the demographics of Bighead and Silver Carp. We sampled 67 reaches in the lower Red River and its major tributaries for juvenile Carp and other small-bodied fishes (24 of the reaches were in the Arkansas portion of the Red River). We conducted repeated surveys in these reaches where the reaches were sampled 2-3 times over approximately 2 years representing 242 surveys (95 surveys in Arkansas). We completed adult Carp and native fish assemblage sampling across 61 reaches (22 reaches in Arkansas) where we also repeated surveys at these locations (245 total surveys, 100 surveys completed in Arkansas during the reporting period). We captured the most large-bodied fishes (including Carp) using gillnets and electrofishing, whereas fyke nets and seine hauls collected mainly smaller-bodied fishes. Hoop nets captured fewer fishes when compared to other gear types. We sampled 120,072 fishes, comprising 70 species and 41 genera, from the mainstem Red River in Arkansas. We used data associated with the entire catchment (including OK and TX data) to model the occupancy of adult fishes including both carp species. Carp tended to occupy reaches with the presence of slackwater habitat, that were deeper and narrower (lower habitat complexity), with higher discharge conditions, and were positively associated with chlorophyll-a concentrations. Adult and juvenile assemblage structure varied with reach scale attributes with notable differences among some taxonomically similar species. No carp under the age of 3 were sampled in the catchment. Bighead Carp and Silver Carp in the Red River catchment appear to live longer and grow larger than other populations. Silver Carp and Bighead Carp in the lower Red River had a theoretical maximum length (𝐿 ∞ ) of 920 and 1,348-mm TL, respectively. The oldest sampled Silver Carp and Bighead Carp were age 14 and 17, respectively. Bighead Carp growth was positively associated with warmer air temperatures and negatively associated with discharge variability. Similarly, Silver Carp growth was positively associated with warm air temperature and negatively associated with discharge variability. However, Silver Carp growth was also positively related to high discharge conditions and the variability of air temperature. Silver Carp annual mortality was relatively low and recruitment into the population appeared steady. It appears that Carp are likely coming from another catchment, have only limited or periodic successful reproduction in the study area, or spawn downriver in LA. Continued monitoring for reproductive success would be helpful. Moreover, if the goal is to greatly reduce or eliminate carp, then strategies that prevent further immigration before reproduction occurs or becomes more successful would be ideal. Targeted removal may then be useful for reducing numbers already in the catchment; however, there are also oxbow lakes that contain carp but appear only connected to the river during major floods (i.e., possible source locations).

Arkansas, Oklahoma, Texas↗

USGS2023

Evaluating the spatial and temporal distribution and ecology of Bighead and Silver Carp and native fishes of the lower Red River basin

We investigated the spatial and temporal distribution of Bighead Carp and Silver Carp (hereafter Carp) in the lower Red River basin of Arkansas. Our study objectives were: 1) determine the spatial and temporal extent of Bighead and Silver Carp in the Red River basin of Arkansas; 2) determine habitat associations of large river fish assemblages; and 3) summarize the demographics of Bighead and Silver Carp. We sampled 67 reaches in the lower Red River and its major tributaries for juvenile Carp and other small-bodied fishes (24 of the reaches were in the Arkansas portion of the Red River). We conducted repeated surveys in these reaches where the reaches were sampled 2-3 times over approximately 2 years representing 242 surveys (95 surveys in Arkansas). We completed adult Carp and native fish assemblage sampling across 61 reaches (22 reaches in Arkansas) where we also repeated surveys at these locations (245 total surveys, 100 surveys completed in Arkansas during the reporting period). We captured the most large-bodied fishes (including Carp) using gillnets and electrofishing, whereas fyke nets and seine hauls collected mainly smaller-bodied fishes. Hoop nets captured fewer fishes when compared to other gear types. We sampled 120,072 fishes, comprising 70 species and 41 genera, from the mainstem Red River in Arkansas. We used data associated with the entire catchment (including OK and TX data) to model the occupancy of adult fishes including both carp species. Carp tended to occupy reaches with the presence of slackwater habitat, that were deeper and narrower (lower habitat complexity), with higher discharge conditions, and were positively associated with chlorophyll-a concentrations. Adult and juvenile assemblage structure varied with reach scale attributes with notable differences among some taxonomically similar species. No carp under the age of 3 were sampled in the catchment. Bighead Carp and Silver Carp in the Red River catchment appear to live longer and grow larger than other populations. Silver Carp and Bighead Carp in the lower Red River had a theoretical maximum length (L_∞) of 920 and 1348-mm TL, respectively. The oldest sampled Silver Carp and Bighead Carp were age 14 and 17, respectively. Bighead Carp growth was positively associated with warmer air temperatures and negatively associated with discharge variability. Similarly, Silver Carp growth was positively associated with the warm air temperature and negatively associated with discharge variability. However, Silver Carp growth was also positively related to high discharge conditions and the variability of air temperature. Silver Carp annual mortality was relatively low and recruitment into the population appeared steady. It appears that Carp are likely coming from another catchment, have only limited or periodic successful reproduction in the study area, or spawn downriver in LA. Continued monitoring for reproductive success would be helpful. Moreover, if the goal is to greatly reduce or eliminate carp, then strategies to prevent further immigration would be ideal before reproduction occurs or becomes more successful. Targeted removal may then be useful for reducing numbers already in the catchment; however, there are also oxbow lakes that contain carp but appear only connected to the river during major floods (i.e., possible source locations).

Cooperator Science Series↗

USGS2014

U.S. Geological Survey Karst Interest Group Proceedings, Carlsbad, New Mexico, April 29-May 2, 2014

Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex, and involve biological, chemical, and physical changes. These factors, combined with the diverse climatic regimes under which karst development in these rocks has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs has resulted in the most exceptional karst areas of the United States being designated as national or state parks; commercial caverns and known privately owned caves number in the tens of thousands. Both public and private properties provide access for scientists to study the flow of groundwater in situ. Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and as unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas can impact the ecosystem and water quality of these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Ground-Water Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as other federal and state agencies, and with researchers from academia and institutes. The KIG also encourages younger scientists by participation of students in the poster and oral sessions. To accomplish its mission, the KIG has organized a series of workshops that are held near nationally important karst areas. To date (2014) six KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst features. Proceedings of the workshops are published by the USGS and are available online at http://water.usgs.gov/ogw/karst/kig . The first KIG workshop was held in St. Petersburg, Florida, February 13–16, 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held August 20–22, 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held September 12–15, 2005, in Rapid City, South Dakota, nearby to karst features in evaporites and limestones of the Madison Group in the Black Hills of South Dakota, including Wind Cave National Park and Jewel Cave National Monument. The workshop also included a featured presentation by Thomas Casadevall, Central Region Director, USGS, on the status of earth science at the USGS and evening trips to Jewel Cave led by Mike Wiles, National Park Service (NPS) and Wind Cave led by Rod Horrocks, NPS. The fourth KIG workshop was held May 27–29, 2008, and hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave with Rickard Toomey and Rick Olsen, NPS. The fifth workshop was held April 26–29, 2011, and was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River of the southern Ozarks and a keynote presentation on paleokarst in the United States by Art and Peggy Palmer. This sixth and current 2014 KIG workshop is hosted by the National Cave and Karst Research Institute (NCKRI) in Carlsbad, New Mexico, with Director of NCKRI, George Veni, serving as co-chair of the workshop with Eve Kuniansky, USGS. The session planning committee for this sixth workshop includes Van Brahana, USGS retired and University of Arkansas Professor Emeritus; Tom Byl, USGS and Tennessee State University; Zelda Bailey, former Director of NCKRI and retired Director, National Institute of Standards and Technology, Boulder Laboratory, Colorado; Patrick Tucci, USGS retired; and Mike Bradley, Allan Clark, Geoff Delin, Daniel Doctor, James Kaufmann, Eve Kuniansky, Randy Orndorff, Larry Spangler, and Dave Weary of the USGS. The karst hydrology field trip on Thursday will be led by Lewis Land (NCKRI karst hydrologist) and the optional Friday field trip on the geology of Carlsbad Caverns National Park will be led by George Veni. The keynote speaker is Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at NCKRI, who will address the future of karst research. Additionally, there is a featured presentation “Irish karst and its management,” by Caoimhe Hickey, The Geological Survey of Ireland, preceding a panel discussion on “Collaboration During Times of Limited Resources.” The extended abstracts of USGS authors were peer reviewed and approved for publication by the U.S. Geological Survey. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to our editorial standards or stratigraphic nomenclature and is not research conducted or data collected by the USGS. However, all articles had at a minimum of two peer reviews, and all articles were edited for consistency of appearance in the published Proceedings. The use of trade, firm or product names in any article is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS, Office of Groundwater, provides technical support for the Karst Interest Group website and public availability of the Proceedings from these workshops, and the USGS Groundwater Resources Program funds the publication costs. Finally, the cover illustration is the work of Ann Tihansky, USGS, used since the first KIG workshop in 2000.

Scientific Investigations Report↗

USGS2017

U.S. Geological Survey Karst Interest Group Proceedings, San Antonio, Texas, May 16–18, 2017

Introduction and Acknowledgments Karst aquifer systems are present throughout parts of the United States and some of its territories, and have developed in carbonate rocks (primarily limestone and dolomite) and evaporites (gypsum, anhydrite, and halite) that span an interval of time encompassing more than 550 million years. The depositional environments, diagenetic processes, post-depositional tectonic events, and geochemical weathering processes that form karst aquifers are varied and complex. These factors involve biological, chemical, and physical changes that when combined with the diverse climatic regimes in which karst development has taken place, result in the unique dual- or triple-porosity nature of karst aquifers. These complex hydrogeologic systems typically represent challenging and unique conditions to scientists attempting to study groundwater flow and contaminant transport in these terrains. The dissolution of carbonate rocks and the subsequent development of distinct and beautiful landscapes, caverns, and springs have resulted in the most exceptional karst areas being designated as national or state parks. Tens of thousands of similar areas in the United States have been developed into commercial caverns and known privately owned caves. Both public and private properties provide access for scientists to study the flow of groundwater in situ . Likewise, the range and complexity of landforms and groundwater flow systems associated with karst terrains are enormous, perhaps more than for any other aquifer type. Karst aquifers and landscapes that form in tropical areas, such as the cockpit karst along the north coast of Puerto Rico, differ greatly from karst landforms in more arid climates, such as the Edwards Plateau in west-central Texas or the Guadalupe Mountains near Carlsbad, New Mexico, where hypogenic processes have played a major role in speleogenesis. Many of these public and private lands also contain unique flora and fauna associated with these karst hydrogeologic systems. As a result, numerous federal, state, and local agencies have a strong interest in the study of karst terrains. Many of the major springs and aquifers in the United States have developed in carbonate rocks, such as the Floridan aquifer system in Florida and parts of Alabama, Georgia, and South Carolina; the Ozark Plateaus aquifer system in parts of Arkansas, Kansas, Missouri, and Oklahoma; and the Edwards-Trinity aquifer system in west-central Texas. These aquifers, and the springs that discharge from them, serve as major water-supply sources and form unique ecological habitats. Competition for the water resources of karst aquifers is common, and urban development and the lack of attenuation of contaminants in karst areas due to dissolution features that form direct pathways into karst aquifers can impact the ecosystem and water quality associated with these aquifers. The concept for developing a platform for interaction among scientists within the U.S. Geological Survey (USGS) working on karst-related studies evolved from the November 1999 National Groundwater Meeting of the USGS. As a result, the Karst Interest Group (KIG) was formed in 2000. The KIG is a loose-knit, grass-roots organization of USGS and non-USGS scientists and researchers devoted to fostering better communication among scientists working on, or interested in, karst science. The primary mission of the KIG is to encourage and support interdisciplinary collaboration and technology transfer among scientists working in karst areas. Additionally, the KIG encourages collaborative studies between the different mission areas of the USGS as well as with other federal and state agencies, and with researchers from academia and institutes. To accomplish its mission, the KIG has organized a series of workshops that have been held near nationally important karst areas. To date (2017) seven KIG workshops, including the workshop documented in this report, have been held. The workshops typically include oral and poster sessions on selected karst-related topics and research, as well as field trips to local karst areas. To increase non-USGS participation an effort was made for the workshops to be held at a university or institute beginning with the fourth workshop. Proceedings of the workshops are published by the USGS and are available online at the USGS publications warehouse https://pubs.er.usgs.gov/ by using the search term “karst interest group.” The first KIG workshop was held in St. Petersburg, Florida, in 2001, in the vicinity of the large springs and other karst features of the Floridan aquifer system. The second KIG workshop was held in 2002, in Shepherdstown, West Virginia, in proximity to the carbonate aquifers of the northern Shenandoah Valley, and highlighted an invited presentation on karst literature by the late Barry F. Beck of P.E. LaMoreaux and Associates. The third KIG workshop was held in 2005, in Rapid City, South Dakota, near evaporite karst features in limestones of the Madison Group in the Black Hills of South Dakota. The Rapid City KIG workshop included field trips to Wind Cave National Park and Jewel Cave National Monument, and featured a presentation by Thomas Casadevall, then USGS Central Region Director, on the status of Earth science at the USGS. The fourth KIG workshop in 2008 was hosted by the Hoffman Environmental Research Institute and Center for Cave and Karst Studies at Western Kentucky University in Bowling Green, Kentucky, near Mammoth Cave National Park and karst features of the Chester Upland and Pennyroyal Plateau. The workshop featured a late-night field trip into Mammoth Cave led by Rickard Toomey and Rick Olsen, National Park Service. The fifth KIG workshop in 2011 was a joint meeting of the USGS KIG and University of Arkansas HydroDays, hosted by the Department of Geosciences at the University of Arkansas in Fayetteville. The workshop featured an outstanding field trip to the unique karst terrain along the Buffalo National River in the southern Ozarks, and a keynote presentation on paleokarst in the United States was delivered by Art and Peggy Palmer. The sixth KIG workshop was hosted by the National Cave and Karst Research Institute (NCKRI) in 2014, in Carlsbad, New Mexico. George Veni, Director of the NCKRI, served as a co-chair of the workshop with Eve Kuniansky of the USGS. The workshop featured speaker Dr. Penelope Boston, Director of Cave and Karst Studies at New Mexico Tech, Socorro, and Academic Director at the NCKRI, who addressed the future of karst research. The field trip on evaporite karst of the lower Pecos Valley was led by Lewis Land (NCKRI karst hydrologist), and the field trip on the geology of Carlsbad Caverns National Park was led by George Veni. This current seventh KIG workshop is being held in San Antonio at the University of Texas at San Antonio (UTSA). This 2017 workshop is being hosted by the Department of Geological Sciences’ Student Geological Society (SGS), and student chapters of the American Association of Petroleum Geologists (AAPG) and Association of Engineering Geologists (AEG), with support by the UTSA Department of Geological Sciences and Center for Water Research. The UTSA student chapter presidents, Jose Silvestre (SGS), John Cooper (AAPG), and Tyler Mead (AEG) serve as co-chairs of the 2017 workshop with Eve Kuniansky of the USGS. The technical session committee is chaired by Eve Kuniansky, USGS, and includes Michael Bradley, Tom Byl, Rebecca Lambert, John Lane, and James Kaufmann, all USGS, and Patrick Tucci, retired USGS. The logistics committee includes Amy Clark, Yongli Gao, and Lance Lambert (Department Chair), UTSA Department of Geological Sciences; and Ryan Banta and Allan Clark, USGS, San Antonio, Texas. The field trip committee is chaired by Allan Clark and includes Amy Clark, Yongli Gao, and Keith Muehlestein, UTSA; Marcus Gary, Edwards Aquifer Authority and University of Texas at Austin; Ron Green, Southwest Research Institute; Geary Schindel, Edwards Aquifer Authority; and George Veni, NCKRI. Additionally, two organizations have assisted the UTSA student chapters in hosting the meeting by donating funds to the chapters: the Edwards Aquifer Authority, San Antonio, Texas, and the Barton Springs Edwards Aquifer Authority, Austin, Texas. Additionally, Yongli Gao, Center for Water Research and Department of Geological Sciences, UTSA, helped develop sessions on cave and karst research in China for this workshop. These proceedings could not have been accomplished without the assistance of Lawrence E. Spangler as co-editor who not only has subject matter expertise, but also serves as an editor with the USGS Science Publishing Network. We sincerely hope that this workshop continues to promote future collaboration among scientists of varied and diverse backgrounds, and improves our understanding of karst aquifer systems in the United States and its territories. The extended abstracts of USGS authors were peer reviewed and approved for publication by the USGS. Articles submitted by university researchers and other federal and state agencies did not go through the formal USGS peer review and approval process, and therefore may not adhere to USGS editorial standards or stratigraphic nomenclature. However, all articles had a minimum of two peer reviews and were edited for consistency of appearance in the proceedings. The use of trade, firm or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government. The USGS Water Availability and Use Science Program funded the publication costs of the proceedings.

Scientific Investigations Report↗

USGS2016

Chronic wasting disease in white-tailed deer: Infection, mortality, and implications for heterogeneous transmission

Chronic wasting disease (CWD) is a fatal neurodegenerative disease affecting free-ranging and captive cervids that now occurs in 24 U.S. states and two Canadian provinces. Despite the potential threat of CWD to deer populations, little is known about the rates of infection and mortality caused by this disease. We used epidemiological models to estimate the force of infection and disease-associated mortality for white-tailed deer in the Wisconsin and Illinois CWD outbreaks. Models were based on age-prevalence data corrected for bias in aging deer using the tooth wear and replacement method. Both male and female deer in the Illinois outbreak had higher corrected age-specific prevalence with slightly higher female infection than deer in the Wisconsin outbreak. Corrected ages produced more complex models with different infection and mortality parameters than those based on apparent prevalence. We found that adult male deer have a more than threefold higher risk of CWD infection than female deer. Males also had higher disease mortality than female deer. As a result, CWD prevalence was twofold higher in adult males than females. We also evaluated the potential impacts of alternative contact structures on transmission dynamics in Wisconsin deer. Results suggested that transmission of CWD among male deer during the nonbreeding season may be a potential mechanism for producing higher rates of infection and prevalence characteristically found in males. However, alternatives based on high environmental transmission and transmission from females to males during the breeding season may also play a role.

Ecology↗

USGS2002

The importance of rapid, disturbance-induced losses in carbon management and sequestration

Management of terrestrial carbon fluxes is being proposed as a means of increasing the amount of carbon sequestered in the terrestrial biosphere. This approach is generally viewed only as an interim strategy for the coming decades while other longer-term strategies are developed and implemented — the most important being the direct reduction of carbon emissions. We are concerned that the potential for rapid, disturbance-induced losses may be much greater than is currently appreciated, especially by the decision-making community. Here we wish to: (1) highlight the complex and threshold-like nature of disturbances — such as fire and drought, as well as the erosion associated with each — that could lead to carbon losses; (2) note the global extent of ecosystems that are at risk of such disturbance-induced carbon losses; and (3) call for increased consideration of and research on the mechanisms by which large, rapid disturbance-induced losses of terrestrial carbon could occur . Our lack of ability as a scientific community to predict such ecosystem dynamics is precluding the effective consideration of these processes into strategies and policies related to carbon management and sequestration. Consequently, scientists need to do more to improve quantification of these potential losses and to integrate them into sound, sustainable policy options.

Global Ecology and Biogeography↗

USGS1998

Effects of landcover, water redistribution, and temperature on ecosystem processes in the South Plate Basin

Over one-third of the land area in the South Platte Basin of Colorado, Nebraska, and Wyoming, has been converted to croplands. Irrigated cropland now comprises 8% of the basin, while dry croplands make up 31%. We used the RHESSys model to compare the changes in plant productivity and vegetation-related hydrological processes that occurred as a result of either land cover alteration or directional temperature changes (−2°C, +4°C). Land cover change exerted more control over annual plant productivity and water fluxes for converted grasslands, while the effect of temperature changes on productivity and water fluxes was stronger in the mountain vegetation. Throughout the basin, land cover change increased the annual loss of water to the atmosphere by 114 mm via evaporation and transpiration, an increase of 37%. Both irrigated and nonirrigated grains became active earlier in the year than shortgrass steppe, leading to a seasonal shift in water losses to the atmosphere. Basin-wide photosynthesis increased by 80% due to grain production. In contrast, a 4°C warming scenario caused annual transpiration to increase by only 3% and annual evaporation to increase by 28%, for a total increase of 71 mm. Warming decreased basin-wide photosynthesis by 16%. There is a large elevational range from east to west in the South Platte Basin, which encompasses the western edge of the Great Plains and the eastern front of the Rocky Mountains. This elevational gain is accompanied by great changes in topographic complexity, vegetation type, and climate. Shortgrass steppe and crops found at elevations between 850 and 1800 m give way to coniferous forests and tundra between 1800 and 4000 m. Climate is increasingly dominated by winter snow precipitation with increasing elevation, and the timing of snowmelt influences tundra and forest ecosystem productivity, soil moisture, and downstream discharge. Mean annual precipitation of <500 mm on the plains below 1800 m is far less than potential evapotranspiration of 1000–1500 mm and is insufficient for optimum plant productivity. The changes in water flux and photosynthesis from conversion of steppe to cropland are the result of redistribution of snowmelt water from the mountains and groundwater pumping through irrigation projects.

Ecological Applications↗