USGS Science⌕ Search

SEARCH · USGS Science

Results for “Wildlife Disease”

Search indexed USGS publications on groundwater, aquifers, geologic maps, mineral resources and earthquakes. Explore source records by subject and place.

Quote a phrase for an exact phrase match. Source license links do not imply unrestricted reuse.

At least 1,153 records · Page 64Linked to original sources

Analyzing stakeholder preferences for managing elk and bison at the National Elk Refuge and Grand Teton National Park: An example of the disparate stakeholder management approach

The U.S. Fish and Wildlife Service (FWS) and the National Park Service (NPS) are preparing a management plan for bison and elk inhabiting the National Elk Refuge (NER) and Grand Teton National Park (GTNP) near Jackson Hole, Wyoming. A management plan is needed to evaluate current and possible changes to habitat management, disease management, winter feeding and hunting programs related to the NER and GTNP. In order to make good decisions, managers need to incorporate the opinions and values of the involved stakeholders as well as understand the complex institutional constraints and opportunities that influence the decision making process. Federal, state, local, private and public stakeholders have diverse values and preferences about how to use and manage resources, and underlying institutional factors give certain stakeholders more influence over the outcome. How stakeholders use their influence can greatly affect the time, effort and costs of the decision making process. The overall result will depend both on the stakeholder’s relative power and level of conviction for their preferences. Many programs and tools have been developed by different disciplines to facilitate group negotiation and decision making. Three examples are relevant here. First, decision analysis models such as the Analytical Hierarchy Process (AHP) are commonly used to prioritize the goals and objectives of stakeholders’ preferences for resource planning by formally structuring conflicts and assisting decision makers in developing a compromised solution (Forman, 1998). Second, institutional models such as the Legal Institutional Analysis Model (LIAM) have been used to describe the organizational rules of behavior and the institutional boundaries constraining management decisions (Lamb and others, 1998). Finally, public choice models have been used to predict the potential success of rent-seeking activity (spending additional time and money to exert political pressure) to change the political rules (Becker, 1983). While these tools have been successful at addressing various pieces of the natural resource decision making process, their use in isolation is not enough to fully depict the complexities of the physical and biological systems with the rules and constraints of the underlying economic and political systems. An approach is needed that combines natural sciences, economics, and politics.

Wyoming↗

Climate change effects on deer and moose in the midwest

Climate change is an increasing concern for wildlife managers across the United States and Canada. Because climate change may alter populations and harvest dynamics of key species in the region, midwestern states have identified the effects of climate change on ungulates as a priority research area. We conducted a literature review of projected climate change in the Midwest and the potential effects on white‐tailed deer ( Odocoileus virginianus ) and moose ( Alces alces ). Warmer temperatures and decreasing snowpack in the region favor survival of white‐tailed deer. In contrast, moose may become physiologically stressed in response to warming, and increasing deer populations spreading disease will exacerbate the problem. Although there is some uncertainty about exactly how the climate will change, and to what degree, robust projections suggest that deer populations will increase in response to climate change and moose populations will decrease. Managers can begin preparing for these changes by proactively creating management plans that take this into account.

Journal of Wildlife Management↗

Surveillance and monitoring of white-tailed deer for chronic wasting disease in the northeastern United States

Chronic wasting disease (CWD) is a prion disease that affects both wild and captive cervid populations. In the past 45 y, CWD has spread from northern Colorado to all bordering states, as well as the midwestern United States (Midwest) and northeastern United States (Northeast), Canada, and South Korea. Because CWD is a relatively new issue for wildlife management agencies in the Northeast, we surveyed a representative (e.g., cervid biologist, wildlife veterinarian) from 14 states to gain a better understanding of state-specific surveillance measures. Between 2002 and 2012, New York (37,093) and Pennsylvania (35,324) tested the greatest number of harvested white-tailed deer Odocoileus virginianus in the Northeast. Additionally, the 14 states surveyed have tested 121,730 harvested deer, or approximately 15,216/y, since CWD was first detected in 2005. The most common tissues used by agencies in the Northeast for testing were retropharyngeal lymph nodes, which have been determined to be the most reliable in detecting CWD in cervids. Understanding CWD surveillance efforts at a regional scale can help to provide guidance for the development of new surveillance plans or the improvement of existing ones. Furthermore, collaborations among state and regional agencies in the Northeast may attempt to identify deficiencies in surveillance by state or subregion.

Connecticut, Delaware, Maine, Maryland, Massachuse↗

Identifying priority chronic wasting disease surveillance areas for mule deer in Montana

Chronic wasting disease (CWD) is a fatal prion disease that affects a variety of ungulate species including mule deer ( Odocoileus hemionus ). As of 2014, no CWD cases had been reported in free-ranging ungulates in Montana. However, nearby cases in Canada, Wyoming, and the Dakotas indicated that the disease was encroaching on Montana's borders. Mule deer are native and common throughout Montana, and they represent a significant portion of the total hunter-harvested cervids in the state. The arrival of CWD in Montana may have significant ecosystem and socioeconomic impacts as well as potential consequences for wildlife management. We used 18,879 mule deer locations from 892 individual deer collected during 1975–2011 and modeled habitat selection for 7 herds in 5 of the 7 wildlife management regions in Montana. We estimated resource selection functions (RSF) in a Bayesian framework to predict summer and winter habitat preferences for mule deer. We estimated deer abundance from flyover counts for each region, and used the RSF predictions as weights to distribute the deer across the region. We then calculated the distance to the nearest known infected herds. We predicted areas of high risk of CWD infection in mule deer as areas with densities above the median density estimate and within the lowest quartile of distances to known infected herds. We identified these areas, the southeast corner of Montana and the north-central border near Alberta and Saskatchewan, as priority areas for CWD surveillance and management efforts.

Montana↗

Rapidly expanding range of highly pathogenic avian influenza viruses

The movement of highly pathogenic avian influenza (H5N8) virus across Eurasia and into North America and the virus’ propensity to reassort with co-circulating low pathogenicity viruses raise concerns among poultry producers, wildlife biologists, aviculturists, and public health personnel worldwide. Surveillance, modeling, and experimental research will provide the knowledge required for intelligent policy and management decisions.

Emerging Infectious Diseases↗

Prevalence of Mycoplasma ovipneumoniae in desert bighorn sheep in Arizona

To assess the potential for an epizootic of pneumonia to result from either natural immigration or translocation, we compared the seroprevalence to Mycoplasma ovipneumoniae in several populations of desert bighorn sheep in Arizona. We collected blood samples and nasal or oropharyngeal swabs from 124 desert bighorn sheep (Ovis canadensis nelsoni) from 6 populations in Arizona in 2009 and 2010. M. ovipneumoniae organisms were detected by PCR in 22%, whereas antibodies to M. ovipneumoniae were detected in 47% of tested bighorn sheep. Mycoplasma antibodies were not found in 2 of 6 populations, indicating some bighorn sheep populations in Arizona are naïve to this bacterium. In contrast, others had seroprevalence rates up to 80%. We were able to compare seroprevalence rates and titers over time in 9 individuals (7 individuals included in the 124 bighorn sheep sampled in 2009 and 2010, and 2 individuals originally captured in 2006). Antibody titers persisted for 12 months in individuals from the Kofa National Wildlife Refuge (n = 7) while antibody titers appeared to decline in the Kanab Creek population (n = 2). M. ovipneumoniae is present or has been present in several, but not all, populations of bighorn sheep in Arizona. The results demonstrate the importance of routine health testing for future translocation efforts to reduce disease risk for naive populations.

Arizona↗

Translocation and disease monitoring of wild laysan ducks

The Laysan duck (Anas laysanensis), also known as the Laysan teal because of its small size, is a critically endangered waterfowl species that once occurred widely across the Hawaiian Archipelago. For the past 150 years, however, it was restricted to a single population on Laysan, a 4-square-kilometer (1.5-square-mile) island with a hypersaline shallow lake. Laysan is part of the Hawaiian Islands National Wildlife Refuge in Papahanaumokuakea Marine National Monument.

Hawaii↗

Wildlife contact analysis: Emerging methods, questions, and challenges

Recent technological advances, such as proximity loggers, allow researchers to collect complete interaction histories, day and night, among sampled individuals over several months to years. Social network analyses are an obvious approach to analyzing interaction data because of their flexibility for fitting many different social structures as well as the ability to assess both direct contacts and indirect associations via intermediaries. For many network properties, however, it is not clear whether estimates based upon a sample of the network are reflective of the entire network. In wildlife applications, networks may be poorly sampled and boundary effects will be common. We present an alternative approach that utilizes a hierarchical modeling framework to assess the individual, dyadic, and environmental factors contributing to variation in the interaction rates and allows us to estimate the underlying process variation in each. In a disease control context, this approach will allow managers to focus efforts on those types of individuals and environments that contribute the most toward super-spreading events. We account for the sampling distribution of proximity loggers and the non-independence of contacts among groups by only using contact data within a group during days when the group membership of proximity loggers was known. This allows us to separate the two mechanisms responsible for a pair not contacting one another: they were not in the same group or they were in the same group but did not come within the specified contact distance. We illustrate our approach with an example dataset of female elk from northwestern Wyoming and conclude with a number of important future research directions.

Behavioral Ecology and Sociobiology↗

A bibliography of literature pertaining to plague ( Yersinia pestis )

Plague is an acute and often fatal zoonotic disease caused by the bacterium Yersinia pestis . Y. pestis mainly cycles between small mammals and their fleas; however, it has the potential to infect humans and frequently causes fatalities if left untreated. It is often considered a disease of the past; however, since the late 1800s, plagueis geographic range has expanded greatly, posing new threats in previously unaffected regions of the world, including the Western United States. A literature search was conducted using Internet resources and databases. The keywords chosen for the searches included plague, Yersinia pestis , management, control, wildlife, prairie dogs, fleas, North America, and mammals. Keywords were used alone or in combination with the other terms. Although this search pertains mostly to North America, citations were included from the international research community, as well. Databases and search engines used included Google ( http://www.google.com ), Google Scholar ( http://scholar.google.com ), SciVerse Scopus ( http://www.scopus.com ), ISI Web of Knowledge ( http://apps.isiknowledge.com ), and the USGS Library's Digital Desktop ( http://library.usgs.gov ). The literature-cited sections of manuscripts obtained from keyword searches were cross-referenced to identify additional citations or gray literature that was missed by the Internet search engines. This Open-File Report, published as an Internet-accessible bibliography, is intended to be periodically updated with new citations or older references that may have been missed during this compilation. Hence, the authors would be grateful to receive notice of any new or old papers that the audience (users) think need to be included.

Open-File Report↗

Precipitation, density, and population dynamics of desert bighorn sheep on San Andres National Wildlife Refuge, New Mexico

Understanding the determinants of population size and performance for desert bighorn sheep (Ovis canadensis mexicana) is critical to develop effective recovery and management strategies. In arid environments, plant communities and consequently herbivore populations are strongly dependent upon precipitation, which is highly variable seasonally and annually. We conducted a retrospective exploratory analysis of desert bighorn sheep population dynamics on San Andres National Wildlife Refuge (SANWR), New Mexico, 1941-1976, by modeling sheep population size as a function of previous population sizes and precipitation. Population size and trend of desert bighorn were best and well described (R 2=0.89) by a model that included only total annual precipitation as a covariate. Models incorporating density-dependence, delayed density-dependence, and combinations of density and precipitation were less informative than the model containing precipitation alone (??AlCc=8.5-22.5). Lamb:female ratios were positively related to precipitation (current year: F1,34=7.09, P=0.012; previous year: F1,33=3.37, P=0.075) but were unrelated to population size (current year. F1,34=0.04, P=0.843; previous year: F1,33 =0.14, P=0.715). Instantaneous population rate of increase (r) was related to population size (F1,33=5.55; P=0.025). Precipitation limited populations of desert bighorn sheep on SANWR primarily in a density-independent manner by affecting production or survival of lambs, likely through influences on forage quantity and quality. Habitat evaluations and recovery plans for desert bighorn sheep need to consider fundamental influences on desert bighorn populations such as precipitation and food, rather than focus solely on proximate issues such as security cover, predation, and disease. Moreover, the concept of carrying capacity for desert bighorn sheep may need re-evaluation in respect to highly variable (CV =35.6%) localized precipitation patterns. On SANWR carrying capacity for desert bighorn sheep was zero when total annual precipitation was <28.2 cm.

Wildlife Society Bulletin↗

The walk is never random: subtle landscape effects shape gene flow in a continuous white-tailed deer population in the Midwestern United States

One of the pervasive challenges in landscape genetics is detecting gene flow patterns within continuous populations of highly mobile wildlife. Understanding population genetic structure within a continuous population can give insights into social structure, movement across the landscape and contact between populations, which influence ecological interactions, reproductive dynamics or pathogen transmission. We investigated the genetic structure of a large population of deer spanning the area of Wisconsin and Illinois, USA, affected by chronic wasting disease. We combined multiscale investigation, landscape genetic techniques and spatial statistical modelling to address the complex questions of landscape factors influencing population structure. We sampled over 2000 deer and used spatial autocorrelation and a spatial principal components analysis to describe the population genetic structure. We evaluated landscape effects on this pattern using a spatial autoregressive model within a model selection framework to test alternative hypotheses about gene flow. We found high levels of genetic connectivity, with gradients of variation across the large continuous population of white-tailed deer. At the fine scale, spatial clustering of related animals was correlated with the amount and arrangement of forested habitat. At the broader scale, impediments to dispersal were important to shaping genetic connectivity within the population. We found significant barrier effects of individual state and interstate highways and rivers. Our results offer an important understanding of deer biology and movement that will help inform the management of this species in an area where overabundance and disease spread are primary concerns.

Illinois, Wisconsin↗

Respiratory disease, behavior, and survival of mountain goat kids

Bacterial pneumonia is a threat to bighorn sheep ( Ovis canadensis ) populations. Bighorn sheep in the East Humboldt Mountain Range (EHR), Nevada, USA, experienced a pneumonia epizootic in 2009–2010. Testing of mountain goats ( Oreamnos americanus ) that were captured or found dead on this range during and after the epizootic detected bacteria commonly associated with bighorn sheep pneumonia die‐offs. Additionally, in years subsequent to the bighorn sheep epizootic, the mountain goat population had low kid:adult ratios, a common outcome for bighorn sheep populations that have experienced a pneumonia epizootic. We hypothesized that pneumonia was present and negatively affecting mountain goat kids in the EHR. From June–August 2013–2015, we attempted to observe mountain goat kids with marked adult females in the EHR at least once per week to document signs of respiratory disease; identify associations between respiratory disease, activity levels, and subsequent disappearance (i.e., death); and estimate weekly survival. Each time we observed a kid with a marked adult female, we recorded any signs of respiratory disease and collected behavior data that we fit to a 3‐state discrete hidden Markov model (HMM) to predict a kid's state (active vs. sedentary) and its probability of disappearing. We first observed clinical signs of respiratory disease in kids in late July–early August each summer. We observed 8 of 31 kids with marked adult females with signs of respiratory disease on 13 occasions. On 11 of these occasions, the HMM predicted that kids were in the sedentary state, which was associated with increased probability of subsequent death. We estimated overall probability of kid survival from June–August to be 0.19 (95% CI = 0.08–0.38), which was lower than has been reported in other mountain goat populations. We concluded that respiratory disease was present in the mountain goat kids in the EHR and negatively affected their activity levels and survival. Our results raise concerns about potential effects of pneumonia to mountain goat populations and the potential for disease transmission between mountain goats and bighorn sheep where the species are sympatric.

Journal of Wildlife Management↗

Mitigating risk: Predicting H5N1 avian influenza spread with an empirical model of bird movement

Understanding timing and distribution of virus spread is critical to global commercial and wildlife biosecurity management. A highly pathogenic avian influenza virus (HPAIv) global panzootic, affecting ~600 bird and mammal species globally and over 83 million birds across North America (Dec 2023), poses a serious global threat to animals and public health. We combined a large, long-term waterfowl GPS tracking dataset (16 species) with on-ground disease surveillance data (county-level HPAIv detections) to create a novel empirical model that evaluated spatiotemporal exposure and predicted future spread and potential arrival of HPAIv via GPS tracked migratory waterfowl through 2022. Our model was effective for wild waterfowl, but predictions lagged HPAIv detections in poultry facilities and among some highly impacted non-migratory species. Our results offer critical advance warning for applied biosecurity management and planning and demonstrate the importance and utility of extensive multi-species tracking to highlight potential high-risk disease spread locations and more effectively manage outbreaks.

Transboundary and Emerging Diseases↗

Chronic wasting disease—Status, science, and management support by the U.S. Geological Survey

The U.S. Geological Survey (USGS) investigates chronic wasting disease (CWD) at multiple science centers and cooperative research units across the Nation and supports the management of CWD through science-based strategies. CWD research conducted by USGS scientists has three strategies: (1) to understand the biology, ecology, and causes and distribution of CWD; (2) to assess and predict the spread and persistence of CWD in wildlife and the environment; and (3) to develop tools for early detection, diagnosis, surveillance, and control of CWD.

Open-File Report↗

Fostering real-time climate adaptation: Analyzing past, current, and forecast temperature to understand the dynamic risk to Hawaiian honeycreepers from avian malaria

Various vector control options are increasingly being considered to safeguard forest birds in their natural habitats from avian malaria transmission. However, vector control options require localized deployment that is not logistically, ethically, ecologically, nor economically viable everywhere and all the time. Based on thermal tolerances of the sporogonic stages of avian malaria (Plasmodium relictum) parasite and its vector, the southern house mosquito (Culex quinquefasciatus), we examined the long-term weather trends for three high value, forest bird refuges (Alakai Wilderness Preserve on Kaua’i, Hanawi Natural Area Reserve on Maui, and Hakalau Forest National Wildlife Refuge on Hawai’i Island) to understand the temporal and site-specific differences of temperature-driven suitability for localized avian malaria transmission. On average, Alakai had mean ambient temperatures suitable for both the vector’s immature stage development and parasite sporogonic development most of the time (85.3%), indicating that observed variability in vector abundance or disease transmission may be driven by other factors. At higher elevation sites like Hakalau and Hanawi, current mean ambient temperatures suitable only for vector development prevail (91.7% and 96.6%, respectively), while mean ambient temperatures for both vector and parasite sporogonic development seldom occur (4.4% and 0% respectively). Our results not only show differences in the temperature suitability for transmission across elevation, but also different levels of vulnerability to avian malaria transmission with any additional projected increase in temperature. For instance, under a conservative warming scenario of 1.0 °C, the joint temperature suitability of parasite and vector development increases at higher elevation sites such as Hakalau (+35.8%) and Hanawi (+15.4%). While mean ambient temperatures suitable for both vector and parasite development already occur most of the time at Alakai, the occurrence also increases (+8.4%) as well under this conservative warming scenario. By linking current site-specific weather data to real-time weather forecasts, we developed a real-time avian malaria warning system to assist managers in identifying conditions when vector control is most needed at these three selected study sites. This online tool determines when conditions are likely to be suitable for local development of P. relictum and C. quinquefasciatus at Alakai, Hanawi, and Hakalau. This tool illustrates how managers can incorporate climate and current weather patterns into decision making without having to consider the uncertainties of long-term climatic and ecological projections.

Hawaii↗

West Nile virus in livestock and wildlife

West Nile (WN) virus, the causative agent of West Nile fever, a dengue-like infection in humans, is one of the most widely distributed arthropod-borne viruses extending, until recently, from Africa, the Middle East, Europe, and western Asia. WN virus is a natural avian virus transmitted between birds primarily by ornithophilic mosquitoes, although isolations have been reported from mammals and amphibians, other mosquitoes and ticks. This virus has one of the broadest host and vector ranges and historically caused clinical disease in humans and equines only.

Book chapter↗

U.S. Geological Survey environmental health science strategy — Providing environmental health science for a changing world

Executive Summary America has an abundance of natural resources. We have bountiful clean water, fertile soil, and unrivaled national parks, wildlife refuges, and public lands. These resources enrich our lives and preserve our health and wellbeing. These resources have been maintained because of our history of respect for their value and an enduring commitment to their vigilant protection. Awareness of the social, economic, and personal value of the health of our environment is increasing. The emergence of environmentally driven diseases caused by exposure to contaminants and pathogens is a growing concern worldwide. New health threats and patterns of established threats are affected by both natural and anthropogenic changes to the environment. Human activities are key drivers of emerging (new and re-emerging) health threats. Societal demands for land and natural resources, quality of life, and economic prosperity lead to environmental change. Natural earth processes, climate trends, and related climatic events will compound the environmental impact of human activities. These environmental drivers will influence exposure to disease agents, including viral, bacterial, prion, and fungal pathogens, parasites, synthetic chemicals and substances, natural earth materials, toxins, and other biogenic compounds. The U.S. Geological Survey (USGS) defines environmental health science broadly as the interdisciplinary study of relations among the quality of the physical environment, the health of the living environment, and human health. The interactions among these three spheres are driven by human activities, ecological processes, and natural earth processes; the interactions affect exposure to contaminants and pathogens and the severity of environmentally driven diseases in animals and people. This definition provides USGS with a framework for synthesizing natural science information from across the Bureau and providing it to environmental, natural resource, agricultural, and public health managers. USGS specializes in science at the environment-health interface, by characterizing the processes that affect the interaction among the physical environment, the living environment, and people, and the resulting factors that affect ecological and human exposure to disease agents. The USGS is a Federal science agency with a broad range of natural science expertise relevant to environmental health. USGS provides scientific information and tools as a scientific basis for management and policy decisionmaking. This report describes a 10-year strategy that encompasses the portfolio of USGS environmental health science. It summarizes national environmental health priorities that USGS is best suited to address, and will serve as a strategic framework for USGS environmental health science goals, actions, and outcomes for the next decade. Implementation of this strategy is intended to aid coordination of USGS environmental health activities and to provide a focal point for disseminating information to stakeholders. The “One Health” paradigm advocated by the World Health Organization (WHO; World Health Organization, 2011), and the American Veterinary Medical Association (AVMA; American Veterinary Medical Association, 2008), among others, is based on a general recognition that the health of humans, animals, and the environment are inextricably linked. Thus, successful efforts to protect that health will require increased interdisciplinary research and increased communication and collaboration among the broader scientific and health community. This strategy is built upon that paradigm.

Circular↗

Hakalau’s moving castle: How climate change and restoration are shifting an island fortress for forest birds

Hakalau Forest Unit of the Big Island National Wildlife Refuge Complex (hereafter, Hakalau) protects the largest area with the highest endemic forest bird diversity in Hawaiʻi, including four federally listed species. Hakalau’s higher elevation montane forest provides refuge from avian malaria ( Plasmodium relictum ), a primary driver of Hawaiian honeycreeper extinctions. However, recent declines in Hakalau’s birds at lower elevations could indicate that conditions have become suitable for disease vector Culex quinquefasciatus . We evaluated the statuses of Hakalau’s bird populations in the context of recent climatic changes using new survey data from point-transect distance sampling, producing abundance estimates from 1999 to 2024. We stratified our analysis across four elevation ranges (<1500 m, 1500–1700 m, 1700–1900 m, and >1900 m) and assessed trends for each species using state-space models (SSMs). We constrained population trajectories to be biologically realistic by incorporating population dynamic models within the SSMs. We observed highly species-specific abundance trends below 1500 m, predominantly stable to upward trends within 1500–1700 m, stable trends within 1700–1900 m, and upward trends above 1900 m. Declines in Hawaiʻi ʻamakihi ( Chlorodrepanis v. virens ) and endangered ʻakiapōlāʻau ( Hemignathus wilsoni ) abundance coincided with lengthening warm seasonal temperatures indicative of shrinking disease-free habitat below 1700 m. Above 1900 m, however, increases in nearly all species indicate that reforestation has likely restored disease-free habitat since 1999. While most species were stable to increasing overall, surveillance for mosquitoes and disease at lower elevations, documenting changes in habitat, and continuing bird population monitoring can help to gauge their long-term persistence at Hakalau.

Hawaii↗