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USGS2026

Numerical modeling of Late Pleistocene to Holocene earthquake-induced progressive rock slope damage in the paraglacial Serpentine valley, Prince William Sound, Alaska

Landslides in deglaciating fjords pose a potential tsunami threat to nearby communities; however, processes contributing to long-term progressive rock damage and landslide conditioning remain poorly constrained in paraglacial settings. Here, we analyse the role of earthquake-induced rock mass damage over late Pleistocene to Holocene time scales, as a conditioning factor for modern landslides, using distinct element numerical modelling to assess spatial and temporal patterns of fracture propagation influenced by varying glacier thickness. Conceptualised numerical models were parameterised by in situ rock mass, glacial and topographic conditions in Serpentine valley, located in Prince William Sound, Alaska, where several large landslides are actively developing along the western valley wall. Results show that although rigid glacier buttressing reduces co-seismic rock mass damage, it does not suppress it completely, and damage occurs both above and below the glacier surface elevation. We demonstrate that topography, and especially steep slopes with topographic convexity, as well as preexisting damage of joint networks and faults inherited from tectonic and exhumation induced stresses, exert primary control on the location of new co-seismic damage. Simulations representing a simplified deglaciation sequence over the past 25 ka, with a series of 10 evenly spaced earthquakes, generated rock mass damage patterns that qualitatively match in situ landslide structural and kinematic observations at one instability in Serpentine valley. Our conceptual study helps clarify the role of repeated seismicity over glacial timescales as a long-term conditioning process for paraglacial rock slope failure, highlighting spatial and temporal patterns of progressive damage accumulation, with outcomes relevant for modern landslide hazard assessment.

Alaska↗
USGS2024

Colored shaded relief bathymetry and acoustic backscatter of Ozette Lake, Washington

Offshore of the Pacific Northwest of the United States is the Cascadia Subduction Zone, a 1,000-kilometer-long tectonic boundary defined by a large fault, called a megathrust, that extends from the Mendocino Junction off northern California to the Nootka Fracture Zone off Vancouver Island, Canada (U.S. Geological Survey, 2023). The Juan de Fuca and Gorda oceanic plates to the west of this boundary subduct under the North America continental plate to the east. Several other smaller faults that cut through the North America plate crust also affect the region. Although their effects upon Ozette Lake are uncertain, geological evidence for past earthquakes, such as underwater landslides, may be found in Pacific Northwest lakes. Underwater landslides caused by past earthquakes should be well preserved in these relatively undisturbed lake environments. The floor of Ozette Lake, Washington, located along the Pacific coast of the United States, west of the Puget Sound region and about 140 kilometers east of the megathrust was mapped by the U.S. Geological Survey in July of 2019 to search for evidence of past earthquakes. Mapping was completed using a SWATHplus-M 234-kHz interferometric side scan sonar system pole-mounted on the U.S. Geological Survey research vessel San Lorenzo. The system collected full-coverage bathymetric and acoustic backscatter data that were processed to 2-meter spatial resolution (Dartnell and others, 2024). This two-map series displays the results of this mapping. A colored shaded relief bathymetry map (sheet 1) and an acoustic backscatter map (sheet 2) show the lake floor morphology and backscatter intensities, respectively, that can be analyzed for evidence of past earthquakes.

Washington↗
USGS2025

Pediment formation and subsequent erosion in Gale crater: Clues to the climate history of Mars

Evidence of paleo-rivers, fans, deltas, lakes, and channel networks across Mars has prompted much debate about what climate conditions would permit the formation of these surface water derived features. Pediments, gently sloping erosional surfaces of low relief developed in bedrock, have also been identified on Mars. On Earth, these erosional landforms, often thought to be created by overland flow and shallow channelized runoff, are typically capped by fluvial sediments, and thus in exceptionally arid regions, pediments are interpreted to record past wet periods. Here we document the Greenheugh pediment in Gale crater, exploiting the observational capability of the Curiosity rover. The absence of a fluvial cap suggests that the pediment was likely cut by wind erosion, not fluvial processes. The pediment was then buried by an aeolian deposit (Stimson sandstone) that mantled the lower footslopes of Aeolis Mons (informally known as Mt. Sharp). This burial terminated active wind erosion, preserving the pediment surface (as an angular unconformity). Groundwater was present prior-to, during, and shortly after Stimson deposition, perhaps contributing to lithification and certainly to early diagenesis. Post lithification, wind erosion first cut canyons in the northern most footslopes (north of Vera Rubin ridge). Unlithified gravels were deposited in these canyons, likely due to runoff from Mt. Sharp. Boulder-rich fluvial and debris flow deposits built a > 70 m thick sequence (Gediz Vallis ridge) on the southern Greenheugh pediment. Continued wind erosion left elevated patches of gravel on the northern footslopes, and exposure age dating shows that erosion essentially ceased before 1 Ga (but possibly much earlier). Erosion to the south led to emergence of Vera Rubin ridge, retreat of the Greenheugh pediment, and the formation of Glen Torridon valley. Hence, this footslope environment of Mt. Sharp records climate-driven periods of wind erosion, aeolian deposition (and groundwater activity), surface runoff and sediment deposition, followed by further significant wind erosion that declined to present very slow rates. This likely occurred during the late Hesperian and possibly into the Amazonian.

Icarus↗
USGS2026

Shallow differentiation of primitive arc magmas at the Jurassic Emigrant Gap mafic complex, Sierra Nevada, California

The Emigrant Gap composite pluton exposes ultramafic to silicic intrusive rocks that preserve the chemical evolution of primitive mafic arc magmas and their open-system interactions in the upper crust during mid-Jurassic growth of the Sierra Nevada batholith (California). We present field and petrographic observations and mineral and whole-rock chemistry of the ~35-km 2 ultramafic to dioritic Emigrant Gap mafic complex and an adjacent penecontemporaneous ~90-km 2 granodiorite that together make up the composite pluton. In the Emigrant Gap mafic complex, four roughly central masses of dunite, wehrlite, and olivine clinopyroxenite are surrounded by weakly layered gabbronorite and non-layered diorite. The ultramafic rocks are cumulates formed from near-liquidus minerals of primitive arc magmas that accumulated in steep feeder zones with substantial modification by melt–mush reaction as primitive liquids repeatedly transited the mush-filled conduits. The dominant gabbronoritic rocks are the variably accumulative products of more advanced crystallization–differentiation of arc tholeiitic basalts and basaltic andesites. The adjacent granodiorite intrusion originated separately and preserves field and geochemical evidence for assimilation of metasedimentary rocks. Open-system hybridization between the gabbronoritic mushes and the granodioritic magma produced an intervening body of two-pyroxene diorite. We infer that the ultramafic rocks and gabbronorite of the Emigrant Gap mafic complex crystallized from near-primitive arc basaltic to basaltic andesitic magmas at ~0.15–0.3 GPa, with estimated f O 2 of ≥FMQ +1 and dissolved H 2 O concentrations of only ~0.5–2 wt %. Notably, the Emigrant Gap composite pluton is distinct from other Mesozoic plutons in the Sierra Nevada batholith because of (1) its abundance of mafic and ultramafic rocks that crystallized from relatively primitive mafic melts and (2) the low inferred H 2 O concentrations of its parental magmas, indicated by a near absence of igneous amphibole and by the intermediate rather than calcic compositions of plagioclase. A Jurassic regional extension event probably accounts for the formation of relatively dry primitive arc magmas, as well as for their ascending to the upper crust.

California↗
USGS2025

Land-based nutrient flux to a fringing reef: Insights from Ofu Island, American Samoa

Submarine groundwater discharge (SGD) is a critical driver of nutrient transport in coral reef ecosystems, shaping water quality, primary productivity, and overall reef health. This study quantifies SGD fluxes and associated nutrient dynamics in two reef flat pools within the Ofu Unit of the National Park of American Samoa: Papaloloa and Fatuana. A multi-method approach integrating unoccupied aerial system-based thermal infrared (UAS-TIR) surveys, radon-based SGD measurements, multichannel electrical resistivity tomography (ERT), and discrete water sampling was used to assess SGD rates and nutrient contributions. UAS-TIR imagery revealed cooler sea surface temperatures in both pools, indicative of SGD, with the higher fluxes observed in Papaloloa. Radon measurements revealed a strong inverse correlation between SGD rates and tidal stage, with a more immediate SGD response at Papaloloa due to its highly permeable calcareous sand and gravel substrate. In contrast, a 2–3-hour lag in SGD response at Fatuana suggests discharge from a more inland aquifer that has lower diffusivity. Nutrient concentrations correlated with temperature and salinity, confirming SGD as the dominant nutrient transport mechanism, whereas isotopic analyses indicated inputs from both groundwater and potential anthropogenic sources. Despite lower SGD flux at Fatuana, higher algal cover suggests additional factors influencing algal proliferation, including substrate availability and hydrodynamic conditions. Excess nutrient inputs from SGD may contribute to algal overgrowth, which threatens Ofu’s thermally tolerant corals by increasing competition for space and light. These findings underscore the complexity of SGD-mediated nutrient dynamics in reef environments and emphasize the need for integrated hydrological and ecological assessments to support effective reef conservation and management strategies.

American Samoa, Ofu Island, Olosega Island↗
USGS2024

Wave propagation in layered soil deposits

Recent advances in the general theory of viscoelastic waves and rays in layered media provide a rigorous mathematical framework for site-specific, soil-response models used for earthquake resistant design. The advances provide general closed-form anelastic solutions for the classic problems of the response of a stack of soil layers to S and P waves, ray theory for reflected and refracted waves, Rayleigh- and Love-Type surface waves, and head waves. These general solutions valid for anelastic media regardless of the amount of material damping yield new insights regarding the characteristics of seismic waves and their ray paths that are not provided by conventional models. They provide corresponding numerical ground-response models and ray-tracing computation algorithms that account for changes in velocity and attenuation of anelastic waves associated with changes in inhomogeneity of the waves induced by anelastic soil and soil-rock boundaries. These anelastic effects manifest themselves as variations in amplitude response, amplitude attenuation, raypath location, and travel time as observed at the Earth’s surface. Implications of these anelastic effects for soil-response models used for earthquake resistant design are provided herein.

Conference Paper↗
USGS2025

Evaluating Laramide orogenesis via flexural basin response in the San Juan basin, New Mexico and Colorado

A challenge in interpreting the location, timing, and magnitude of ancient orogenic events is that ongoing uplift and erosion in the hinterlands often destroys much of the primary record of these events. However, basin-thickness patterns in the sedimentary record can provide complimentary evidence of uplift via flexural effects. Here, we deploy well-log correlation, isochores, basin modeling, flexural modeling, and subcrop mapping to evaluate the Late Cretaceous to Paleogene basin response to Laramide tectonism in the San Juan basin. A wedge of upper Campanian to Maastrichtian sedimentary rock thickens from 200 to 800 meters from southeast to northwest in the basin. This pattern can be successfully simulated via flexural modeling if we infer early Laramide uplift along the northwest basin flank that produced a 0.8 km high topographic load. The Laramide unconformity bounds the top of this Upper Cretaceous sedimentary wedge and truncates progressively older strata to the east, further supporting a westward tilt of the basin. The onset of Campanian Laramide flexure may have also contributed to the profound transgression from the upper Menefee Formation to the Lewis Shale. The Paleocene isochore map displays an approximately symmetrical pattern, with thickening towards the center of the basin. This suggests the possibility of competing flexural loads. The base Eocene structure indicates an asymmetric deep on the northeast flank of the basin, providing flexural evidence of contemporaneous uplift/loading of the Nacimiento uplift and Archuleta arch; this has been modeled as ~2.1 km load height. Both Cretaceous and Paleocene sedimentary wedges are narrow, suggesting low flexural rigidity; modeled effective elastic thicknesses (EET) are 20-30 km, comparable to estimates of modern EET for the region.

Colorado, New Mexico↗
USGS2024

Ungulate migrations of the Western United States, volume 4

Broadly distributed across the Western United States, ungulates (hooved mammals) play an important role in ecosystem function by affecting vegetation communities and forming the prey base for large carnivores. Additionally, ungulates provide economic benefits to regional communities through tourism and hunting and hold cultural significance for many Tribal communities. Many ungulates migrate seasonally between distinct summer and winter ranges to take advantage of spatially and temporally variable food sources and avoid threats such as predators and deep snow. Increasingly, these migrations are threatened by the growing human footprint and associated subdivisions, energy development, and increased traffic volume. Efforts to study ungulate populations and conserve their migrations received support in recent years from the U.S. Department of the Interior Secretarial Order No. 3362, which provided Federal support for enhancing habitat quality for ungulates across the Western States. In response to Secretarial Order No. 3362, the U.S. Geological Survey (USGS) established the Corridor Mapping Team, a collaboration among USGS and participating State and Federal wildlife management agencies and numerous Tribal Nations. Together, the Corridor Mapping Team maps ungulate migrations throughout the Western United States in the USGS “Ungulate Migrations of the Western United States” report series. This report (volume 4) details migrations and seasonal ranges from 31 new herds throughout nine Western States. Additionally, this report includes updates to two herds published in previous reports. Including this report, the report series has provided the mapped migrations and seasonal ranges of 182 unique herds and has provided a map-based inventory of the documented ungulate migrations across the Western United States for biologists, managers, policy makers, and conservation practitioners. This report also discusses how the mapping efforts associated with the Corridor Mapping Team can be used to guide management and policy regarding renewable energy development and ungulate disease, specifically chronic wasting disease, in the Western United States.

Arizona, California, Colorado, New Mexico, Nevada,↗
USGS2025

No evidence for an active margin-spanning megasplay fault at the Cascadia Subduction Zone

It has been previously proposed that a megasplay fault within the Cascadia accretionary wedge, spanning from offshore Vancouver Island to Oregon, has the potential to slip during a future Cascadia subduction zone earthquake. This hypothetical fault has major implications for tsunami size and arrival times and is included in disaster-planning scenarios currently in use in the region. This hypothesis is evaluated in this study using CASIE21 deep-penetrating and U.S. Geological Survey high-resolution seismic reflection profiles. We map changes in wedge structural style and seismic character to identify the inner-outer wedge transition zone where a megasplay fault has been previously hypothesized to exist and evaluate evidence for active faulting within this zone. Our results indicate that there is not an active, through-going megasplay fault in Cascadia, but instead, the structure and activity of faulting at the inner-outer wedge transition zone is highly variable and segmented along strike, consistent with the segmentation of other physical and mechanical properties in Cascadia. Wedge sedimentation, plate dip, and subducting topography are proposed to play a major role in controlling megasplay fault development and evolution. Incorporating updated megasplay fault location, geometry, and activity into modeling of Cascadia earthquakes and tsunamis could help better constrain associated hazards.

British Columbia, Oregon, Washington↗
USGS2026

Long-term monotonic trends in water budget components in the contiguous United States: Insights from two hydrologic models

Characterizing changes to water availability for domestic, industrial, agricultural, and other uses is essential to support water management. To better quantify these changes, the U.S. Geological Survey and National Science Foundation National Center for Atmospheric Research produced two hydrologic models simulating water budget components from 1980 to 2021 over the contiguous United States (CONUS). Both hydrologic models were driven by a common atmospheric forcing dataset and aggregated to common spatial and temporal scales, which enables a novel evaluation of congruency between the models. We present annual and seasonal trends in six water budget components (precipitation, evapotranspiration, streamflow, groundwater recharge, soil saturation, and snow water equivalent) based on the Mann–Kendall test for monotonic trend and Theil-Sen slope estimate for the water year 1983–2021 period for ~86,000 catchments in CONUS. Additional components and metrics from our analysis pipeline are available in an associated published dataset, which contains more than 46 million trend results. The water budget trends showed broad agreement with prior observational and modeling studies that indicate increasing trends in the northeast and decreasing trends in southwestern CONUS. We found the seasonal variability in water budget trends was greatest in the southern, central, and northwest CONUS. These findings support integrated trend assessments when coupled with trends in water quality and use.

Contiguous United States↗
USGS2025

Zircon as a pathfinder to REE mineralization

Carbonatites and alkaline silicate rocks are major primary sources of the rare earth elements (REE) and other critical metals, such as Nb. Despite the economic significance of these rocks, their formation and the processes of REE enrichment are poorly understood. Here, statistical analysis of a global dataset demonstrates that zircon geochemistry is a powerful recorder of REE metallogenesis and a potential pathfinder for REE deposits. Zircons from REE and Nb fertile intrusions lack Eu anomalies and have elevated Gd/Yb and Th/Yb, indicating they crystallised from magmas that originated from deep, oxidised and enriched mantle sources. Complexes with Nb enrichment have low U/Nb, reflecting an enriched mantle source, whereas high U/Nb in REE-only fertile intrusions suggest a subduction-metasomatised mantle source. Machine learning models demonstrate high accuracy in classifying zircon from barren and fertile deposits. Classification of detrital zircons shows that REE-enriched deposits correlate with supercontinent assembly, whereas Nb fertile complexes are associated with supercontinent breakup. This approach offers a new, mineral to global scale, petrologic and exploration tool that enhances understanding of REE metallogenesis.

Geochemical Perspectives Letters↗
USGS2024

Seismic response comparison of a historical masonry church subject to real and simulated ground motions

In recent years, advanced numerical models and high-performance computing have facilitated the utilization of ground motion time series in the assessment of the non-linear dynamic behavior of historic masonry structures. Since recorded accelerograms can be sparse for specific analysis conditions, stochastic ground motion simulations have become a viable alternative to overcome this limitation. This study simulates the recorded acceleration time series of the Central Italy 2016 earthquake event at the closest station to the town of Macerata using a site-based stochastic approach. The simulated motions are seismologically evaluated using a goodness-of-fit method in terms of various intensity measures. The simulated records, in conjunction with real records, are used to study the non-linear dynamic behavior of San Filippo Neri church located in Macerata. The church of San Filippo represents an important example of Baroque religious architecture in central Italy, which was damaged and closed off to the public after the 2016 earthquake events. The construction was investigated with a vast diagnostic campaign which included on-site testing and dynamic identification tests. The collected data is used to calibrate the dynamic response of a three-dimensional finite element model of the church. The model is finally used to compare the non-linear seismic responses under real and simulated ground motions with the site recorded damage. The results of structural responses demonstrate a strong agreement between the real and simulated records, providing evidence to support the validation of the site-based stochastic simulation.

Macerata↗
USGS2024

Mapping the resistivity structure of Walker Ridge 313 in the Gulf of Mexico using the marine CSEM method

A marine controlled source electromagnetic (CSEM) campaign was carried out in the Gulf of Mexico to further develop marine electromagnetic techniques in order to aid the detection and mapping of gas hydrate deposits. Marine CSEM methods are used to obtain an electrical resistivity structure of the subsurface which can indicate the type of substance filling the pore space, such as gas hydrates which are more resistive. Results from the Walker Ridge 313 study (WR 313) are presented in this paper and compared with the Gulf of Mexico Gas Hydrate Joint Industry Project II (JIP2) logging while drilling (LWD) results and available seismic data. The hydrate, known to exist within sheeted sand deposits, is mapped as a resistive region in the two dimensional (2D) CSEM inversion models. This is consistent with the JIP2 LWD resistivity results. CSEM inversions that use seismic horizons provide more realistic results compared to the unconstrained inversions by providing sharp boundaries and architectural control on the location of the resistive and conductive regions in the CSEM model. The seismic horizons include: 1) the base of the gas hydrate stability zone (BGHSZ), 2) the top of salt, and 3) the top and bottom of a fine grained marine mud interval with near vertical hydrate filled fractures, to constrain the CSEM inversion model. The top of salt provides improved location for brines, water saturated salt, and resistive salt. Inversions of the CSEM data map the occurrence of a ‘halo’ of conductive brines above salt. The use of the BGHSZ as a constraint on the inversion helps distinguish between free gas and gas hydrate as well as gas hydrate and water saturated sediments.

Louisiana↗
USGS2026

Influence of new residential construction varying in housing density on bird species, human tolerance guilds, and communities

Human population growth and changing settlement patterns fuel the development of urban fringe lands worldwide, with implications for biodiversity. We conducted a 12-year study of birds in the fast-developing urban fringe lands of the central Puget Sound region, Washington, USA, to examine the effect of development configuration on birds. We hypothesized that lower-intensity conservation developments, compared to higher-intensity planned community developments, would benefit the overall bird community, as well as native forest birds (avoiders of human development) and avian generalist species (adapters to human development), but that higher-intensity planned community developments would benefit synanthropic species (exploiters of human development). We fit single-species and multi-species occupancy models to test these hypotheses. Consistent with our hypotheses, we found that a greater proportion of the overall community, avoiders, and adapters occupied lower-intensity conservation developments compared to higher-intensity planned community developments. However, we did not detect an effect of development type on the exploiter guild, and we found that species in the exploiter guild are variable in their response to the configuration of suburban developments. We also hypothesized that human tolerance guilds would be a useful predictor of individual species responses to development type. This hypothesis was somewhat supported: we found that, for avoiders, 87% of species in the guild had the same response to development type as the overall guild; for adapters, 63% had the same response as the overall guild, and for exploiters, only 44% had the same response as the overall guild. Our results indicate that the configuration of suburban developments can have a meaningful impact on bird communities, particularly on those species that are most sensitive to any level of development.

Washington↗
USGS2024

Exploring the dynamic interactions between the Southern San Andreas Fault and a normal fault under the Salton Sea

We investigate the dynamic interactions between the Southern San Andreas Fault (SSAF) and a proximal normal fault (NF) beneath the Salton Sea in southern California. The NF, positioned near the SSAF terminus at Bombay Beach, exhibits 11–15 displacement events across 14 stratigraphic sequences, with a range of 0.2–1.4 m of vertical offset since ∼2–3 ka. Notably, four of these events may align temporally with SSAF earthquakes, raising questions about the possible interplay between the two faults. Utilizing dynamic rupture models, we analyze the coseismic interactions between the SSAF and NF, addressing under what conditions the SSAF induces slip on the NF. Our findings reveal that a suite of SSAF ruptures, particularly those propagating from north to south, can trigger slip on the normal fault and replicate observed vertical offsets. If the SSAF extends beneath the Salton Sea, earthquakes originating south of the NF intersection are less likely to trigger normal fault slip, although we cannot exclude this possibility. Some SSAF ruptures do not trigger discernible slip on the NF, rendering such events undetectable in the stratigraphic record. Our research contributes toward discussions regarding the seismic hazard in southern California, shedding light on the interplay between the SSAF and NF.

California↗
USGS2025

Variable partitioning of lithium in rhyolitic melt during decompression and ascent

The partitioning behavior of Li in magmatic systems is increasingly being investigated due to the economic importance of Li in the transition to sustainable energy resources (e.g., batteries). However, at upper crustal pressures, it remains uncertain whether Li preferentially partitions into the vapor or liquid (brine) phase or remains in the silicate melt. This complicates our ability to determine where Li resides—silicate melt, minerals, or fluid phase—upon eruption, a crucial factor for understanding its postdepositional movement and concentration into a brine or volcano-sedimentary deposit. Here, we present a novel investigation into the behavior of Li within natural evolved melts during continuous magma decompression and ascent using melt embayments (open melt inclusions). Mineral-hosted melt embayments preserve records of the evolving composition of the exterior melt, including degassing pathways and ascent timescales, when paired with appropriate diffusion coefficients. Lithium concentration profiles were measured in quartz-hosted melt embayments from the rapidly quenched eruptive phases of five rhyolitic, caldera-forming eruptions to investigate the behavior of Li during magma decompression and ascent, where vapor partitioning and ascent dynamics were previously established by investigating H 2 O and CO 2 profiles. We find that in four systems, embayments contain lower interior Li concentrations than the coerupted melt inclusions; the fifth system contains the same Li concentrations in embayments and melt inclusions. However, many of these embayments contain gradients, with 84 % preserving Li enrichment near the melt-bubble interface, as compared to their interior concentration. We interpret these characteristics to represent two distinct stages of Li partitioning during magma decompression and ascent, in contrast to existing literature that proposes only one type of partitioning behavior. The first stage is interpreted as melt depletion of Li, likely driven by partitioning into an exsolved supercritical fluid phase, supported by the strong correlation between the extent of Li depletion and Cl concentration in the melt, as well as the decompression rate. This behavior then fundamentally shifts, where Li reenriches in the melt, postulated to be driven by the unmixing of the supercritical fluid phase at shallow pressures. For the one system that did not develop Li gradients through decompression, we attribute this to the lower values of Na and Cl in the melt, potentially inhibiting the partitioning of Li into a fluid phase. Importantly, the behavior of Li during decompression is not consistent within or between volcanic centers, highlighting the need for systematic experimental investigation in variable composition melts at pressures relevant to conduit dynamics. This knowledge would improve our ability to model Li profiles to understand magma decompression, and predict where Li resides (e.g., stored in volcanic glass, gas, or crystals) upon eruption prior to any later extraction.

Economic Geology↗
USGS2026

Estimation of parental abundance using hierarchical Bayesian modeling with data augmentation

Pedigree-based estimation methods leverage the fact that each offspring in a cohort is genotypically “marked” by its parents and represent a recent and promising toolset for estimating population dynamics. This includes pedigree accumulation estimators that model the “accumulation” of inferred unique parents within a given cohort to estimate parental abundance. Unlike close-kin mark-recapture approaches, which rely on intercohort comparisons, pedigree accumulation modeling can be completed solely using intracohort samples. This is particularly advantageous for semelparous species, where intercohort pairs are impossible and adult life stages can be difficult to sample without affecting their likelihood of successfully reproducing. Previous work has evaluated a range of estimators for such datasets, concluding that the non-parametric Chao estimator provides the most accurate and precise estimates for feasible levels of sampling effort. We used simulated data to evaluate an alternative estimator based on hierarchical modeling and data augmentation in a Bayesian framework. Results indicate that estimates from the hierarchical Bayesian estimator had comparable accuracy and better precision than both the previously tested Chao1 estimator and the improved iChao formulation across a range of sample sizes and sex ratios. Furthermore, the Bayesian estimator was far more robust to simulated errors in pedigree reconstruction, especially the presence of false negatives. Hierarchical Bayesian pedigree accumulation models can also provide additional insight into underlying reproductive ecology through their use of an explicit observation process, allowing for the incorporation or estimation of species- and population-specific reproductive dynamics. More broadly, the parametric nature of these models offers opportunities to efficiently pool information among datasets as well as to propagate uncertainty within more complex models.

Ecology and Evolution↗
USGS2024

Changes in soil erosion caused by wildfire: A conceptual biogeographic model

Soil erosion rates after wildfire are strongly controlled by intrinsic properties such as topography, weather, climate, soil, and vegetation. These landscape and hydroclimatic properties are important in determining post-fire erosion rates; however, their influence on post-fire erosion and their interaction with the intensity of a wildfire remains uncertain. A key limitation in resolving this uncertainty is the lack of conceptual models and frameworks for organising data related to the geomorphic sensitivity of landscapes to wildfire. Our aim is to develop a framework for consolidating understanding of post-fire erosion in the context of hydroclimatic conditions which contribute to system states, for example soil and vegetation properties, and wildfire regime. The framework is developed around a simple conceptual model where the change in erosion due to wildfire is a product of change in runoff generation and sediment supply, which is strongly related to landscape net primary productivity (NPP). We hypothesised that geomorphic sensitivity to wildfire should vary as a unimodal humped relationship across a gradient of NPP, peaking at an intermediate level. To develop this framework and to test the hypothesis, we first review intrinsic soil and vegetation properties related to the supply and transport of sediment from burned and unburned hillslopes. Net primary productivity is systematically related to these intrinsic properties because it integrates many processes involved in soil and vegetation development. Empirical data indicate a trend in the change in surface runoff generation with NPP after wildfire, peaking at an NPP of approximately 15 Mg C ha −1 y −1 . A simple model of fuel availability and soil heating are correlated with a similar “humped” trend in sediment supply. These results are consistent with our conceptual model, which indicates that sediment supply and runoff contribute towards a distinct peak in wildfire effects on erosion at an intermediate level of NPP. We propose that landscapes of intermediate NPP typically have the highest quantity of fuel available to burn, which cause large changes to the soil surface properties. Landscapes at intermediate NPP also tend to produce intrinsic soil and vegetation properties that promote erosion after wildfire. The interplay between these short and long-term landscape characteristics is strongest at intermediate levels of NPP. Our proposed biogeographic model of geomorphic sensitivity to wildfire was supported by erosion data from burned hillslope and zero-order catchments studies from a range fire-prone landscapes in Australia and North America. Our proposed conceptual model will help identify areas most vulnerable to post-fire erosion changes.

Geomorphology↗