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At least 1,117 records · Page 62Linked to original sources
USGS2009

Variations of thiaminase I activity pH dependencies among typical Great Lakes forage fish and Paenibacillus thiaminolyticus.

The source of thiaminase in the Great Lakes food web remains unknown. Biochemical characterization of the thiaminase I activities observed in forage fish was undertaken to provide insights into potential thiaminase sources and to optimize catalytic assay conditions. We measured the thiaminase I activities of crude extracts from five forage fish species and one strain of Paenibacillus thiaminolyticus over a range of pH values. The clupeids, alewife Alosa pseudoharengus and gizzard shad Dorosoma cepedianum, had very similar thiaminase I pH dependencies, with optimal activity ranges (> or = 90% of maximum activity) between pH 4.6 and 5.5. Rainbow smelt Osmerus mordax and spottail shiner Notropis hudsonius had optimal activity ranges between pH 5.5-6.6. The thiaminase I activity pH dependence profile of P. thiaminolyticus had an optimal activity range between pH 5.4 and 6.3, which was similar to the optimal range for rainbow smelt and spottail shiners. Incubation of P. thiaminolyticus extracts with extracts from bloater Coregonus hoyi (normally, bloaters have little or no detectable thiaminase I activity) did not significantly alter the pH dependence profile of P. thiaminolyticus-derived thiaminase I, such that it continued to resemble that of the rainbow smelt and spottail shiner, with an apparent optimal activity range between pH 5.7 and 6.6. These data are consistent with the hypothesis of a bacterial source for thiaminase I in the nonclupeid species of forage fish; however, the data also suggest different sources of thiaminase I enzymes in the clupeid species.

Journal of Aquatic Animal Health↗
USGS2006

Virulence comparisons of infectious hematopoietic necrosis virus U and M genogroups in sockeye salmon and rainbow trout

Infectious hematopoietic necrosis virus (IHNV) is an aquatic rhabdovirus that infects salmonids in the Pacific Northwest of the United States, Europe, and Asia. Isolates of IHNV have been phylogenetically classified into three major viral genogroups, designated U, M, and L. To characterize virulence of IHNV in the context of these three viral genogroups, seven strains of IHNV (three U genogroup strains, three M strains, and one L strain) were compared for their pathogenicity in juvenile sockeye salmon Oncorhynchus nerka, kokanee (lacustrine sockeye salmon), and rainbow trout O. mykiss. Fish were waterborne-exposed to the different viral strains, and virulence was assessed by comparing mortality curves and final cumulative percent mortality (CPM) in both species of fish at 10??C and 15??C. In sockeye salmon and kokanee, the U genogroup virus types were extremely virulent, causing average CPMs of 69-100%, while the M genogroup virus types caused very little or no mortality (CPM = 0-4%). The endangered Redfish Lake sockeye salmon stock exhibited extreme differences in susceptibility to the U and M genogroups. Conversely, in two stocks of rainbow trout, the M genogroup virus types were more virulent, inducing average CPMs of 25-85%, while the U genogroup viruses caused lower mortality (CPM = 5-41%). In both fish species, the single L genogroup strain caused low to intermediate mortality (CPM = 13-53%). Viral glycoprotein sequence comparisons of the seven challenge strains revealed three amino acid sites (247, 256, and 270) that consistently differed between the U and M genogroups, possibly contributing to pathogenicity differences. ?? Copyright by the American Fisheries Society 2006.

Journal of Aquatic Animal Health↗
USGS2009

Selected ground-water-quality data in Pennsylvania - 1979-2006

This study, by the U.S. Geological Survey (USGS) in cooperation with the Pennsylvania Department of Environmental Protection (PADEP), provides a compilation of ground-water-quality data for a 28-year period (January 1, 1979, through December 31, 2006) based on water samples from wells and springs. The data are from 14 source agencies or programs—Borough of Carroll Valley, Chester County Health Department, Montgomery County Health Department, Pennsylvania Department of Agriculture, Pennsylvania Department of Environmental Protection 2002 Pennsylvania Water-Quality Assessment, Pennsylvania Department of Environmental Protection Agency Act 537 Sewage Facilities Program, Pennsylvania Department of Environmental Protection-Ambient and Fixed Station Network, Pennsylvania Department of Environmental Protection–North-Central Region, Pennsylvania Department of Environmental Protection–South-Central Region, Pennsylvania Drinking Water Information System, Pennsylvania Topographic and Geologic Survey, Susquehanna River Basin Commission, U.S. Environmental Protection Agency, and the U.S. Geological Survey. The ground-water-quality data from the different source agencies or programs varied in type and number of analyses; however, the analyses are represented by 11 major analyte groups: antibiotics, major ions, microorganisms (bacteria, viruses, and other microorganisms), minor ions (including trace elements), nutrients (predominantly nitrate and nitrite as nitrogen), pesticides, pharmaceuticals, radiochemicals (predominantly radon or radium), volatiles (volatile organic compounds), wastewater compounds, and water characteristics (field measurements, predominantly field pH, field specific conductance, and hardness). For the USGS and the PADEP–North-Central Region, the pesticide analyte group was broken down into fungicides, herbicides, and insecticides. Summary maps show the areal distribution of wells and springs with ground-water-quality data statewide by source agency or program. Summary data tables by source agency or program provide information on the number of wells and springs and samples collected for each of the 35 watersheds and analyte groups. The number of wells and springs sampled for ground-water-quality data varies considerably across Pennsylvania. Of the 24,772 wells and springs sampled, the greatest concentration of wells and springs is in the southeast (Berks, Bucks, Chester, Delaware, Lancaster, Montgomery, and Philadelphia Counties) and in the northwest (Erie County). The number of wells and springs sampled is relatively sparse in north-central (Cameron, Elk, Forest, McKean, Potter, and Warren Counties) Pennsylvania. Little to no data are available for approximately one-fourth of the state. Nutrients and water characteristics were the most frequently sampled major analyte groups—43,025 and 30,583 samples, respectively. Minor ions and major ions were the next most frequently sampled major analyte groups–26,972 and 13,115 samples, respectively. For the remaining 10 major analyte groups, the number of samples collected ranged from a low of 24 samples (antibiotic compounds) to a high of approximately 4,674 samples (microorganisms). The number of samples that exceeded a maximum contaminant level (MCL) or secondary maximum contaminant level (SMCL) by major analyte group also varied. Of the 4,674 samples in the microorganism analyte group, 50.2 percent had water that exceeded an MCL. Of the 4,528 samples collected and analyzed for volatile organic compounds, 23.5 percent exceeded an MCL. Other major analyte groups that frequently exceeded MCLs or SMCLs included major ions (18,343 samples and a 27.7 percent exceedence), minor ions (26,972 samples, 44.7 percent exceedence), pesticides (4,868 samples, 0.7 percent exceedence), water characteristics (30,583 samples, 19.3 percent exceedence), and radiochemicals (1,866 samples, 9.6 percent exceedence). Samples collected and analyzed for antibiotics (24 samples), fungicides (1,273 samples), herbicides (1,470 samples), insecticides (1,424 samples), nutrients (43,025 samples), pharmaceuticals (28 samples), and wastewater compounds (328 samples) had the lowest exceedences of 0.0, 2.4, 1.2, <1.0, 8.3, 0.0, and <1.0 percent, respectively.

Pennsylvania↗
USGS2019

Nutrients in northern Missouri streams

Nutrients, specifically nitrogen and phosphorus, are necessary for healthy aquatic communities to thrive, but if nutrient concentrations are too high, water quality can be degraded and natural aquatic communities may be destroyed. Nutrients consistently have been listed nationally as one of the top five causes of stream and river impairments, and agriculture consistently has been identified as the leading known source. The Mississippi River watershed was identified as a top priority for nutrient reductions because of the predominant agricultural land use, the associated harmful effects of nutrient loading on local water bodies, and the resulting annual midsummer northern Gulf of Mexico hypoxic “dead” zone. In 2010, the Natural Resources Conservation Service started the Mississippi River Basin Healthy Watersheds Initiative, which offers financial and technical assistance for voluntary conservation practices on agricultural lands. The intention is to reduce nutrient and sediment export to waterways within the Mississippi River watershed. The U.S. Geological Survey Missouri Water Science Center and the Missouri Department of Natural Resources began a cooperative study in 2010 to compare temporal changes in total nitrogen and total phosphorus concentrations in the Lower Grand River. Despite increases in conservation practice funding from the Mississippi River Basin Healthy Watersheds Initiative during 2011–15 for the Lower Grand River, decreases in flow-normalized total nitrogen and total phosphorus concentrations during this same period at the Grand River site were less than at the other long-term Missouri River tributary sites that did not receive additional funding. The flow-normalized total nitrogen and total phosphorus concentrations at the three long-term Missouri River tributary sites were related to the amount of agricultural land use within their watersheds and livestock manure may be a substantial source of stream nitrogen. Monthly total nitrogen and total phosphorus concentrations within the Lower Grand River increased with increased streamflow, indicating that the major sources of nitrogen and phosphorus are runoff or nutrients that are stored in soils within the streambank that mobilize during higher streamflows. Programs such as the Mississippi River Basin Healthy Watersheds Initiative are intended to encourage voluntary agricultural conservation practices to enhance soil health and reduce nutrient export to streams.

Missouri↗
USGS2005

Mercury recycling in the United States in 2000

Reclamation and recycling of mercury from used mercury- containing products and treatment of byproduct mercury from gold mining is vital to the continued, though declining, use of this metal. Mercury is reclaimed from mercury-containing waste by treatment in multistep high-temperature retorts-the mercury is volatized and then condensed for purification and sale. Some mercury-containing waste, however, may be landfilled, and landfilled material represents loss of a recyclable resource and a threat to the environment. Related issues include mercury disposal and waste management, toxicity and human health, and regulation of mercury releases in the environment. End-users of mercury-containing products may face fines and prosecution if these products are improperly recycled or not recycled. Local and State environmental regulations require adherence to the Resource Conservation and Recovery Act and the Comprehensive Environmental Response, Compensation, and Liability Act to regulate generation, treatment, and disposal of mercury-containing products. In the United States, several large companies and a number of smaller companies collect these products from a variety of sources and then reclaim and recycle the mercury. Because mercury has not been mined as a principal product in the United States since 1992, mercury reclamation from fabricated products has become the main source of mercury. Principal product mercury and byproduct mercury from mining operations are considered to be primary materials. Mercury may also be obtained as a byproduct from domestic or foreign gold-processing operations. In the early 1990s, U.S. manufacturers used an annual average that ranged from 500 to 600 metric tons of recycled and imported mercury for fabrication of automobile convenience switches, dental amalgam, fluorescent lamps, medical uses and thermometers, and thermostats. The amount now used for fabrication is estimated to be 200 metric tons per year or less. Much of the data on mercury is estimated because it is a low-volume commodity and its production, use, and disposal is difficult to track. The prices and volumes of each category of mercury-containing material may change dramatically from year to year. For example, the average price of mercury was approximately $150 per flask from 2000 until 2003 and then rose sharply to $650 per flask in fall 2004 and approximately $850 per flask in spring 2005. Since 1927, the common unit for measuring and pricing mercury has been the flask in order to conform to the system used at Almaden, Spain (Meyers, 1951). One flask weighs 34.5 kilograms, and 29 flasks of mercury are contained in a metric ton. In the United States, the chlorine-caustic soda industry, which is the leading end-user of elemental mercury, recycles most of its mercury in-plant as home scrap. Annual purchases of replacement mercury by the chlorine-caustic soda industry indicate that some mercury may be lost through evaporation to the environment, put into a landfill as industrial waste, or trapped within pipes in the plant. Impending closure of domestic and foreign mercury-cell chlorine-caustic soda plants and the shift to nonmercury technology for chlorine-caustic soda production could ultimately result in a significant volume of elemental mercury for recycling, sale, or storage. Globally, mercury is widely used in artisanal, or small-scale, gold mining. Most of that mercury is lost to the environment and is not recycled. The recycling rate for mercury was not available owing to insufficient data in 2000, and the efficiency of mercury recycling was estimated to be 62 percent.

Circular↗
USGS2005

Mercury recycling in the United States in 2000

Reclamation and recycling of mercury from used mercury- containing products and treatment of byproduct mercury from gold mining is vital to the continued, though declining, use of this metal. Mercury is reclaimed from mercury-containing waste by treatment in multistep high-temperature retorts-the mercury is volatized and then condensed for purification and sale. Some mercury-containing waste, however, may be landfilled, and landfilled material represents loss of a recyclable resource and a threat to the environment. Related issues include mercury disposal and waste management, toxicity and human health, and regulation of mercury releases in the environment. End-users of mercury-containing products may face fines and prosecution if these products are improperly recycled or not recycled. Local and State environmental regulations require adherence to the Resource Conservation and Recovery Act and the Comprehensive Environmental Response, Compensation, and Liability Act to regulate generation, treatment, and disposal of mercury-containing products. In the United States, several large companies and a number of smaller companies collect these products from a variety of sources and then reclaim and recycle the mercury. Because mercury has not been mined as a principal product in the United States since 1992, mercury reclamation from fabricated products has become the main source of mercury. Principal product mercury and byproduct mercury from mining operations are considered to be primary materials. Mercury may also be obtained as a byproduct from domestic or foreign gold-processing operations. In the early 1990s, U.S. manufacturers used an annual average that ranged from 500 to 600 metric tons of recycled and imported mercury for fabrication of automobile convenience switches, dental amalgam, fluorescent lamps, medical uses and thermometers, and thermostats. The amount now used for fabrication is estimated to be 200 metric tons per year or less. Much of the data on mercury is estimated because it is a low-volume commodity and its production, use, and disposal is difficult to track. The prices and volumes of each category of mercury-containing material may change dramatically from year to year. For example, the average price of mercury was approximately $150 per flask from 2000 until 2003 and then rose sharply to $650 per flask in fall 2004 and approximately $850 per flask in spring 2005. Since 1927, the common unit for measuring and pricing mercury has been the flask in order to conform to the system used at Almaden, Spain (Meyers, 1951). One flask weighs 34.5 kilograms, and 29 flasks of mercury are contained in a metric ton. In the United States, the chlorine-caustic soda industry, which is the leading end-user of elemental mercury, recycles most of its mercury in-plant as home scrap. Annual purchases of replacement mercury by the chlorine-caustic soda industry indicate that some mercury may be lost through evaporation to the environment, put into a landfill as industrial waste, or trapped within pipes in the plant. Impending closure of domestic and foreign mercury-cell chlorine-caustic soda plants and the shift to nonmercury technology for chlorine-caustic soda production could ultimately result in a significant volume of elemental mercury for recycling, sale, or storage. Globally, mercury is widely used in artisanal, or small-scale, gold mining. Most of that mercury is lost to the environment and is not recycled. The recycling rate for mercury was not available owing to insufficient data in 2000, and the efficiency of mercury recycling was estimated to be 62 percent.

Open-File Report↗
USGS2012

Assessment of groundwater, soil-gas, and soil contamination at the Vietnam Armor Training Facility, Fort Gordon, Georgia, 2009-2011

The U.S. Geological Survey, in cooperation with the U.S. Department of the Army Environmental and Natural Resources Management Office of the U.S. Army Signal Center and Fort Gordon, Georgia, assessed the groundwater, soil gas, and soil for contaminants at the Vietnam Armor Training Facility (VATF) at Fort Gordon, from October 2009 to September 2011. The assessment included the detection of organic compounds in the groundwater and soil gas, and inorganic compounds in the soil. In addition, organic contaminant assessment included organic compounds classified as explosives and chemical agents in selected areas. The assessment was conducted to provide environmental contamination data to the U.S. Army at Fort Gordon pursuant to requirements of the Resource Conservation and Recovery Act Part B Hazardous Waste Permit process. This report is a revision of "Assessment of soil-gas, surface-water, and soil contamination at the Vietnam Armor Training Facility, Fort Gordon, Georgia, 2009-2010," Open-File Report 2011-1200, and supersedes that report to include results of additional samples collected in July 2011. Four passive samplers were deployed in groundwater wells at the VATF in Fort Gordon. Total petroleum hydrocarbons and benzene and octane were detected above the method detection level at all four wells. The only other volatile organic compounds detected above their method detection level were undecane and pentadecane, which were detected in two of the four wells. Soil-gas samplers were deployed at 72 locations in a grid pattern across the VATF on June 3, 2010, and then later retrieved on June 9, 2010. Total petroleum hydrocarbons were detected in 71 of the 72 samplers (one sampler was destroyed in the field and not analyzed) at levels above the method detection level, and the combined mass of benzene, toluene, ethylbenzene, and total xylene (BTEX) was detected above the detection level in 31 of the 71 samplers that were analyzed. Other volatile organic compounds detected above their respective method detection levels were naphthalene, 2-methyl-naphthalene, tridecane, 1,2,4-trimethylbenzene, and perchloroethylene. After the results of the 71 soil-gas samplers were received, 31 additional passive soil-gas samplers were deployed on July 14, 2011, and retrieved on July 18, 2011. These 31 samplers were deployed on a larger areal scale to better define the extent of the contamination. Total petroleum hydrocarbons were detected above their method detection level at all 31 samplers, whereas BTEX was detected above its method detection level at 17 of the 31 samplers. Other organic compounds detected above their method detection levels were naphthalene, 2-methyl-naphthalene, octane, undecane, tridecane, pentadecane, 1,2,4-trimethylbenzene, 1,3,5-trimethylbenzene, chloroform, and perchloroethylene. Subsequent to the 2010 soil-gas survey, four areas determined to have elevated contaminant mass were selected and sampled for explosives and chemical agents. No detections of explosives or chemical agents above their respective method detection levels were found at any of the sampling locations. The same four locations that were sampled for explosives and chemical agents were selected for the collection of soil samples. A fifth location also was selected on the basis of the elevated contaminant mass of the soil-gas survey. No metals that exceeded the Regional Screening Levels for Industrial Soils, as classified by the U.S. Environmental Protection Agency, were detected at any of the five VATF locations. The soil samples also were compared to values from the ambient, uncontaminated (background) levels for soils in South Carolina, as classified by the South Carolina Department of Health and Environmental Control. Because South Carolina is adjacent to Georgia and the soils in the Coastal Plain are similar, these comparisons are valid. No similar values are available for Georgia to use for comparison purposes. The metals that were detected above the ambient background levels for South Carolina, as classified by the South Carolina Department of Health and Environmental Control, include aluminum, arsenic, barium, beryllium, calcium, chromium, copper, iron, lead, magnesium, manganese, nickel, potassium, sodium, and zinc.

Georgia↗
USGS2004

Surface-water-quality conditions and relation to taste-and-odor occurrences in the Lake Olathe Watershed, Northeast Kansas, 2000-02

Surface water in the Lake Olathe watershed, located in northeast Kansas, was sampled from June 2000 through December 2002 to characterize water-quality conditions in relation to physical properties, major ions, sediment, nutrients, selected trace elements, selected pesticides, fecal indicator bacteria, phytoplankton, and taste-and-odor compounds. In addition, two continuous real-time water-quality monitors were operated?one in Cedar Creek at Highway 56, the main tributary to Lake Olathe, and one in Lake Olathe, a supplemental domestic water supply and recreational resource for the city of Olathe. Median concentrations of dissolved and total forms of nitrogen and phosphorus in samples from Cedar Creek were larger than in samples from Lake Olathe, indicating that nutrients in the watershed were transported to Lake Olathe by Cedar Creek from June 2000 through December 2002. Increased concentrations of total phosphorus in samples from the hypolimnion of Lake Olathe compared to the epilimnion indicated that release of total phosphorus from bottom sediments occurred in the lake. Of the 50 pesticides analyzed in water samples from Cedar Creek and Lake Olathe, 10 pesticides were detected at concentrations greater than 0.01 microgram per liter in samples from Cedar Creek, and 9 pesticides were detected at concentrations greater than 0.01 microgram per liter in Lake Olathe, including four herbicides with concentrations exceeding 1.0 microgram per liter. Atrazine was detected at larger concentrations than any other pesticide in samples from both Cedar Creek and Lake Olathe during 2001 and 2002. Concentrations did not exceed the U.S. Environmental Protection Agency drinking-water annual average criterion of 3.0 micrograms per liter; however, concentrations in single samples were larger than 3.0 micrograms per liter. Regression analysis was used to assist in the estimation of sediment and chemical loads and yields. The estimated mean orthophosphate load for 2001 and 2002 represented 29 percent of the total phosphorus load to Lake Olathe. Estimated yields to Lake Olathe of both total nitrogen and total phosphorus, 13.0 and 1.1 pounds per acre per year, respectively, were consistent with mixed agricultural land use occurring in the watershed. Concentrations of fecal coliform bacteria samples from Lake Olathe were less than both primary and secondary single-sample criteria for recreational water in Kansas in place at the time of sampling. Sufficient samples were not collected to compare to the December 2003 Kansas Department of Health and Environment criteria, but single-sample Escherichia coli samples collected from Cedar Creek during storm runoff exceeded 2,000 colonies per 100 milliliters of water (former secondary recreation water-quality criterion for fecal coliform bacteria) in four of the seven samples collected. Water from Cedar Creek and Lake Olathe was analyzed in 2002 by enzyme-linked immunosorbent assay for microcystin-LR, a toxic algal compound. Concentrations of microcystin-LR in Lake Olathe during 2002 ranged from less than 0.1 to 0.41 microgram per liter, which is not considered a significant health risk according to guidelines published by the World Health Organization. Regression models were developed for four taste-and-odor phytoplankton species detected frequently in Lake Olathe? Melosira granulata, Anabaena, Oscillatoria, and Cryptomonas. The coefficient of determinations, R2, ranged from 0.64 to 0.89, and p-values ranged from less than 0.001 to 0.014, indicating a statistically significant relation with lake-residence time, specific conductance, turbidity, Secchi transparency depth, real-time continuous fluorescence, and total ammonia plus organic nitrogen as nitrogen. Actinomycetes, filamentous bacteria that are known producers of geosmin and 2-methylisoborneol (MIB), were sampled and analyzed in 2002 in water from Cedar Creek and Lake Olathe. In Lake Olathe, actinomycetes concentrations rang

Scientific Investigations Report↗
USGS2024

Physics to fish—Understanding the factors that create and sustain native fish habitat in the San Francisco Estuary

Executive Summary The Bureau of Reclamation (Reclamation) operates the Central Valley Project (CVP), one of the nation’s largest water projects. Reclamation has an ongoing need to improve the scientific basis for adaptive management of the CVP and, by extension, joint operations with California’s State Water Project. The U.S. Geological Survey (USGS) works cooperatively with the Bureau of Reclamation to provide scientific support for the management of Reclamation’s CVP project. Major habitat restoration efforts and a new water-diversion point are planned to benefit delta smelt ( Hypomesus transpacificus ) and other species of concern while ensuring the reliability of water supply. In addition, various flow actions and management activities have been identified as possible methods to increase populations of delta smelt and salmonid ( Oncorhynchus spp.) runs of concern. The overarching goal of this cooperative project was to provide Reclamation with the scientific information needed to evaluate the efficacy of ongoing and future adaptive management actions and to improve the scientific basis for more flexible CVP operations that would achieve water-supply reliability and fish protection. The research and monitoring described in this report comprises the period 2015–19 and focuses on management issues related to native fish species of concern, especially delta smelt. Conserving the delta smelt population while providing a reliable water supply is a primary management and policy issue in California. Our approach for this cooperative project is based on the “physics to fish” concept, the idea that high-quality habitat is generated and sustained by the interaction between physical processes and the landscape. These interactions create a template for chemical and biological processes that can change across a variety of spatial and temporal scales. Following this concept, this project (hereafter referred to as “the physics to fish project”) included monitoring and studies of water flows, sediments, water quality, and invertebrate and fish dynamics across a range of spatial and temporal scales and in regions relevant to resource managers tasked with managing water supplies and ecosystem health in the San Francisco Estuary. The intent of this approach was to document the habitat conditions, important processes, and interactions among them that create high-quality habitat for native fishes so that the likely effects of future management actions (for example, habitat restoration) can be objectively assessed at the local (site-specific), regional (within subregions of the estuary), and landscape (across the entire estuary and beyond) scales. Hydrodynamically, the upper estuary (landward of Carquinez Strait) is characterized by a fixed volume of tidally exchanged water (for example, tidal prism) that interacts with the existing channel network and bathymetry to create regions with differing hydrodynamics. Our results indicate that careful study of construction or reoperation of existing infrastructure to perform management actions can help (1) improve the accuracy of hydrodynamic models; (2) further understanding of ecological effects; and (3) enhance abilities to predict ecological outcomes. At the local scale, we developed a new concept called the Lagrangian to Eulerian (LE) ratio that can be used as a tool for understanding the importance of various hydrodynamic processes in specific channels or channel networks and for forecasting transport dynamics. Channels with LE ratios<1 in a channel network or in a dead-end slough are hydrodynamically able to develop an exchange zone between two parcels of water that may have different chemical and physical properties. In a dead-end channel, there is a landward region with long residence time (no-exchange zone) and a seaward region with short residence time (high-exchange zone) that are well mixed with seaward waters. At the transition (exchange zone) between the high and no-exchange regions, a gradient will form in water-quality constituents that differ in concentration between the landward and seaward waters. Turbidity affects fish habitat and has declined through time in the San Francisco Estuary. Average turbidity across the Sacramento–San Joaquin Delta (hereafter referred to as “the Delta”) is dependent on annual hydrology. In dry years, the region around Cache Slough (known regionally as the “Cache Slough Complex”) in the northern Delta is generally more turbid than Suisun Bay and the lower Sacramento River. When the Yolo By-Pass (known regionally as “Yolo Bypass”), a large flood bypass that runs parallel to the Sacramento River in the northern Delta, is not flooding and river flows are lower, sediment is usually transported into the Cache Slough Complex because flood tides dominate ebb tides, resulting in transport of suspended sediment from seaward areas of the upper estuary into the Cache Slough Complex. These hydrodynamic conditions also favor the formation of turbidity maximums (TMs) in the Cache Slough Complex. The TMs are areas of higher suspended-sediment concentration, providing higher-turbidity habitat favored by some fishes, including delta smelt, and they can also concentrate other constituents, including phytoplankton and organic carbon that can be important in food webs. Pelagic primary production by phytoplankton is the basis for Delta food webs supporting pelagic fishes such as delta smelt; however, phytoplankton abundance in the Delta has declined during recent decades. We examined how nutrients, hydrodynamics, and other factors affect phytoplankton blooms. Based on our results, we developed three new concepts of phytoplankton bloom formation in the Delta, each associated with a distinct set of hydrologic conditions. First, productivity cascades highlighted how local processes can contribute to phytoplankton blooms observed at the regional scale. Second, we observed phytoplankton blooms in the upper San Francisco Estuary that were associated with transport out of Yolo By-Pass (transport blooms). Third, we also documented a series of phytoplankton blooms that were in the confluence area at the landward edge of Suisun Bay. The conditions leading to creation of confluence phytoplankton blooms are not yet understood, but the confluence region connects the Cache Slough Complex with Suisun Marsh. Therefore, blooms in this area have the potential to spread to large areas of the Delta. At the landscape scale, the distribution of the invasive clams ( Potamocorbula amurensis and Corbicula fluminea , hereafter referred to as “ Corbicula ”) is driven by salinity. At smaller spatial scales, the distribution of either species is sensitive to multiple factors affecting survival and reproduction, complicating efforts to predict distribution and abundance without considering local-scale conditions across the area of interest. In the Cache Slough Complex, the area landward of the exchange zone in regions with LE ratio<1 were characterized by low abundances of Corbicula probably because recruits from seaward areas are not transported past the exchange zone and because there are no landward tributaries with adult Corbicula to provide an upstream source of recruits. Corbicula biomass was highest near or downstream from the exchange zone consistent with Corbicula grazing on phytoplankton produced in the exchange zone or transported from the no-exchange zone. The severity of Corbicula grazing could be reduced by manipulating the hydrodynamic characteristics of waterways; however, the beneficial and harmful effects on the organisms meant to benefit from increased phytoplankton production, including zooplankton and fish species of concern, should be thoroughly examined before manipulating hydrodynamic characteristics. The distribution of fishes at the landscape scale is generally driven by the position of the salinity field in the estuary. The physics to fish project compared distributions of fishes at Ryer Island, a tidal wetland in Suisun Bay and a region of variable salinity, with fish distributions at the Cache Slough Complex, a freshwater region. At Ryer Island, there was an absence of freshwater invasive species and an abundance of native species, such as Sacramento splittail ( Pogonichthys macrolepidotus ), tule perch ( Hysterocarpus traskii ), and Sacramento pikeminnow ( Ptychocheilus grandis ). The native species were almost exclusively captured in wetland and nearshore shallow-water habitat regardless of water-quality conditions. In the Cache Slough Complex, our regional scale objective was to elucidate how hydrodynamic-physical habitat interactions drive fish-community structure. Our studies showed that dendritic channel systems were better able to support native species, while intertidal habitats supported those species best able to exploit the transient character of the habitat. Habitats upstream from the exchange zone were especially important in supporting high numbers of native fishes relative to within or downstream from the exchange zone. Many of the native species were associated with tidal marsh in the no-exchange zone. More pelagic-oriented, mobile species, such as Striped Bass ( Morone saxatilis ), threadfin shad ( Dorosoma petenense ), and Sacramento pikeminnow, were more affected by water-quality conditions, such as turbidity. The physics to fish concept developed in this project provides a framework for designing individual projects and for considering the cumulative effects of multiple projects in a region, using the LE ratio as a guiding metric. The physics to fish concept may also provide a suitable framework for coordinating management actions. Tidal wetlands can function in several ways in the hydrodynamic framework. Relatively small tidal wetlands with short channel networks and with LE ratios>1 are not able to maintain a landward no-exchange zone or an exchange zone. This likely means that any contributions to pelagic food webs would be limited to resources derived from wetland vegetation, which can include dissolved and particulate organic matter (detritus) and populations of consumers that can increase in abundance based on those resources. The fate of the contributed production from these channels depends on the characteristics of the receiving waters seaward of the tidal wetland. If these channels join a large system such as Suisun Bay, then any contribution is likely to be rapidly dispersed in the larger volume; however, the channel junction might provide a focal point for consumers, such as fishes, to congregate and feed on material leaving the wetland on ebb tides before it is dispersed in the larger volume. Fishes might also access these resources by entering the wetland. The physics to fish project has established a foundation and several new concepts for understanding how habitat restoration can benefit native fish populations at the local and regional levels. Many of the ideas regarding habitat restoration and channel modifications outlined in this report could help guide management actions that could improve conditions for native fishes at little or no water cost beyond water already dedicated to other management actions. A complete list of products originating from this work is provided in appendix 1.

California↗
USGS2020

Assessing uranium and select trace elements associated with breccia pipe uranium deposits in the Colorado River and main tributaries in Grand Canyon, USA

Assessing chemical loading from streams in remote, difficult-to-access watersheds is challenging. The Grand Canyon area in northern Arizona, an international tourist destination and sacred place for many Native Americans, is characterized by broad plateaus divided by canyons as much as two-thousand meters deep and hosts some of the highest-grade uranium deposits in the U.S. From 2015–2018 major surface waters in Grand Canyon were monitored for select elements associated with breccia-pipe uranium deposits in the area, including uranium, arsenic, cadmium, and lead. Dissolved constituents in the Colorado River were monitored upstream (Lees Ferry), in the middle (Phantom Ranch), and downstream (Diamond Creek) of uranium mining areas. Concentrations of uranium, arsenic, cadmium, and lead at these main-stem sites varied little during the study period and were all well below human health and aquatic life benchmark criteria (30, 10, 5, and 15 μg/L maximum contaminant levels and 15, 150, 0.8, and 3.1 μg/L aquatic life criteria, respectively). Additionally, dissolved and sediment-bound constituents were monitored during a wide range of streamflow conditions at Little Colorado River, Kanab Creek, and Havasu Creek tributaries, whose watersheds have experienced different levels of uranium mining activities over time. Samples from the tributary sites contained ≤3.8 μg/L of dissolved cadmium and lead, and ≤17 μg/L of dissolved uranium. Dissolved arsenic also was mostly below human and aquatic life criteria at Little Colorado River and Kanab Creek; however, 63% of water samples from Havasu Creek were above the maximum contaminant level for arsenic. Arsenic in suspended sediment was greater than sediment quality guidelines in 9%, 35%, and 35% of samples from Little Colorado River, Kanab Creek, and Havasu Creek, respectively. At the concentrations observed during this study, tributaries contributed on average only about 0.12 μg/L of arsenic and 0.03 μg/L of uranium to the main-stem river. This study demonstrates how chemical loading from mined watersheds may be reliably assessed across a wide range of flow conditions in challenging locations.

Arizona↗
USGS1997

Evaluation by enzyme-linked immunosorbent assay (ELISA) of Renibacterium salmoninarum bacterins affected by persistence of bacterial antigens

Rainbow trout Oncorhynchus mykiss were injected intraperitoneally with a bacterin containing killed Renibacterium salmoninarum cells delivered alone or in an oil-based adjuvant. We evaluated the relative abilities of the batterins to prevent the initiation or progression of infection in fish challenged by waterborne exposure to R. salmoninarum. Sixty-one days after vaccination, fish were held for 24 h in water containing either no bacteria or approximately 1.7 x 103, 1.7 x 105, or 5.3 x 106 live R. salmoninarum cells/mL. An enzyme-linked immunosorbent assay (ELISA) was used to monitor changes in the levels of R. salmoninarum antigen in live fish before and after the immersion challenges. High levels of R. salmoninarum antigens were detected by ELISA in kidney-spleen tissue homogenates from vaccinated fish immediately before the challenges. Levels of those antigens remained high in the tissues of unchallenged fish throughout the study. We found that the ELISA used in this study may be unsuitable for evaluating the efficacy of batterins because it did not distinguish antigens produced by the challenge bacteria during an infection from those of the bacterins. Groups of control and vaccinated fish also were injected with either 1.7 x 104 or 1.7 x 106 R. salmoninarum cells and served as R. salmoninarum virulence controls. Relative survival among the various subgroups in the injection challenge suggests that adverse effects might have been associated with the adjuvant used in this study. The lowest survival at both injection challenge levels was among fish vaccinated with bacteria in adjuvant.

Journal of Aquatic Animal Health↗
USGS2010

Groundwater quality in the Lower Hudson River Basin, New York, 2008

Water samples were collected from 32 production and domestic wells in the study area from August through November 2008 to characterize the groundwater quality. The study area, which covers 5,607 square miles, encompasses the part of the Lower Hudson River Basin that lies within New York plus the parts of the Housatonic, Hackensack, Bronx, and Saugatuck River Basins that are in New York. The study area is underlain by mainly clastic bedrock, predominantly shale, with carbonate and crystalline rock present locally. The bedrock is generally overlain by till, but surficial deposits of saturated sand and gravel are present in some areas. Of the 32 wells sampled, 16 were finished in sand and gravel deposits and 16 were finished in bedrock. The samples were collected and processed by standard U.S. Geological Survey procedures and were analyzed for 225 physiochemical properties and constituents, including major ions, nutrients, trace elements, radon-222, pesticides, and volatile organic compounds (VOCs); indicator bacteria were collected and analyzed by New York State Department of Health procedures. Water quality in the study area is generally good, but concentrations of some constituents exceeded current or proposed Federal or New York State primary or secondary drinking-water standards; the standards exceeded were color (2 samples), pH (6 samples), sodium (8 samples), fluoride (1 sample), aluminum (3 samples), arsenic (1 sample), iron (7 samples), manganese (14 samples), radon-222 (17 samples), tetrachloroethene (1 sample), and bacteria (7 samples). The pH of all samples was typically neutral or slightly basic (median 7.2); the median water temperature was 11.8 degrees C. The ions with the highest concentrations were bicarbonate [median 167 milligrams per liter (mg/L)] and calcium (median 38.2 mg/L). Groundwater in the study area ranged from very soft to very hard, but more samples were classified as very hard (181 mg/L as CaCO3 or more) than soft (60 mg/L as CaCO3 or less); the median hardness was 140 mg/L as CaCO3. The maximum concentration of nitrate plus nitrite was 2.38 mg/L as nitrogen, which did not exceed established drinking-water standards for nitrate plus nitrite (10 mg/L as nitrogen). The trace elements with the highest concentrations were strontium [median 189 micrograms per liter ((u or mu)g/L)] and barium (median 50.6 (u or mu)g/L). The highest radon-222 activities were in samples from crystalline bedrock wells [maximum 13,800 picocuries per liter (pCi/L)]. Seventeen samples had radon-222 activities that exceeded a proposed U.S. Environmental Protection Agency (USEPA) drinking-water standard of 300 pCi/L; activities in two samples exceeded a proposed alternative drinking-water standard of 4,000 pCi/L. Ten pesticides and pesticide degradates were detected among 14 samples at concentrations of 0.183 (u or mu)g/L or less; most were herbicides or their degradates. Eight VOCs were detected among six samples; these included solvents, gasoline components, and a trihalomethane. Total coliform bacteria were detected in seven samples; fecal coliform bacteria, including Escherichia coli, were detected in one sample.

Open-File Report↗
USGS2002

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants and their effects on fish in the Mississippi River Basin

We collected, examined, and analyzed 1378 fish of 22 species from 47 sites in the Mississippi River basin (MRB) during 1995 and from a reference site in 1996. The sampling sites in the MRB represented National Contaminant Biomonitoring Program (NCBP) stations situated at key points on major rivers and National Water- Quality Assessment Program (NAWQA) stations located on lower-order rivers and streams in the Eastern Iowa Basins (EIB) and Mississippi Embayment (MSE) Study Units. The reference site was the water supply system of the USGS-Leetown Science Center in rural Jefferson County, WV. Common carp (Cyprinus carpio; carp) and black basses (Micropterus spp.; bass), the targeted species, together represented 82% of the fish collected. Each fish was examined in the field for externally and internally visible gross lesions, selected organs were weighed to compute various ponderal and organo-somatic indices, and selected tissues and fluids were obtained and preserved for analysis of biomarkers. Fish health indicators included splenic macrophage aggregates, lysozyme activity, and hispathological analysis of liver, kidney, and other tissues. Reproductive biomarkers included analysis of plasma concentrations of vitellogenin (vtg) and the sex steroid hormones 17-estradiol (E2) and 11-ketotestosterone (11- kt); and the histological determination of percent oocyte atresia (in female fish) and gonadal stage. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also measured. Composite samples of whole fish from each station were grouped by species and gender and analyzed for persistent organochlorine and elemental contaminants and for dioxin-like activity (TCDD-EQ) using the H4IIE rat hepatoma cell bioassay. Organochlorine and inorganic contaminant concentrations in fish were generally low relative to historical levels at most sites, but remained present at concentrations representing threats to piscivorous wildlife in some locations. Toxaphene and DDT (mostly as p,p?-DDE) concentrations remained elevated in fish from the cottongrowing regions of the lower Mississippi valley, and were generally greater in the smaller streams draining agricultural areas (that is, in the MSE Study Unit) than at large river sites. Cyclodiene pesticide concentrations were also greatest in the EIB Study Unit and elsewhere in the corn-growing regions of the mid-MRB. Former point-sources of organochlorine pesticides also remained evident, especially in the Mississippi River near Memphis, TN. Consistent with previous findings, total PCB concentrations tended to be greatest (1-3 g/g) in the industrialized and urbanized Ohio River and Upper Mississippi sub-basins and at Memphis, TN, and were generally correlated with TCDD-EQ and EROD activity. Conversely, PCB concentrations were low (<0.1 g/g) in the more agricultural parts of the MRB. Concentrations of inorganic contaminants were also relatively low and stable or declining relative to past levels at most sites. Exceptions were Hg and Se; Hg concentrations were slightly elevated (>0.3 g/g) in bass from the Mississippi River at Memphis and several other sites and in carp from one MSE site. Concentrations of Se were also great enough to constitute a hazard to piscivorous wildlife (>0.6 g/g) at several MRB sites in the western parts of the MRB and were especially high (4-5 g/g) in fish from John Martin Reservoir, CO, where elevated concentrations were reported previously. Biomarker results indicated that fish from many stations had been exposed to contaminants, but at no sites did findings indicate exposure to high concentrations of toxic chemicals. Noteworthy among biomarker findings was that 73% of the male smallmouth bass (Micropterus dolomieui) from the Mississippi River at Lake City, MN (Lake Pepin) were intersex as indicated by the histological detection of ovotestes; and the combined EROD and H4IIE results indicated that fish from several rural sites in the

Mississippi River basin↗
USGS2007

Occurrence of radium-224, radium-226 and radium-228 in water from the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands, southwestern and south-central New Jersey

This investigation is the first regionally focused study of the presence of natural radioactivity in water from the Vincentown and Wenonah-Mount Laurel aquifers, Englishtown aquifer system, and the Hornerstown and Red Bank Sands. Geologic materials composing the Vincentown and Wenonah-Mount Laurel aquifers and the Hornerstown and Red Bank Sands previously have been reported to contain radioactive (uranium-enriched) phosphatic strata, which is common in deposits from some moderate-depth coastal marine environments. The decay of uranium and thorium gives rise to natural radioactivity and numerous radioactive progeny, including isotopes of radium. Naturally occurring radioactive isotopes, especially those of radium, are of concern because radium is a known human carcinogen and ingestion (especially in water used for drinking) can present appreciable health risks. A regional network in southwestern and south-central New Jersey of 39 wells completed in the Vincentown and Wenonah-Mount Laurel aquifers, the Englishtown aquifer system, and the Hornerstown and Red Bank Sands was sampled for determination of gross alpha-particle activity; concentrations of radium radionuclides, major ions, and selected trace elements; and physical properties. Concentrations of radium-224, radium-226, and radium-228 were determined for water from 28 of the 39 wells, whereas gross alpha-particle activity was determined for all 39. The alpha spectroscopic technique was used to determine concentrations of radium-224, which ranged from less than 0.5 to 2.7 pCi/L with a median concentration of less than 0.5pCi/L, and of radium-226, which ranged from less than 0.5 to 3.2 pCi/L with a median concentration of less than 0.5 pCi/L. The beta-counting technique was used to determine concentrations of radium-228. The concentration of radium-228 ranged from less than 0.5 to 4.3 pCi/L with a median of less than 0.5. Radium-228, when quantifiable, had the greatest concentration of the three radium radioisotopes in 9 of the 12 samples (75 percent). The concentration of radium-224 exceeded that of radium-226 in five of the six (83 percent) samples when both were quantifiable. The radium concentration distribution differed by aquifer, with the highest Ra-228 concentrations present in the Englishtown aquifer system and the highest Ra-226 concentrations present in the Wenonah-Mount Laurel aquifer. Radium-224 generally contributed a considerable amount of gross alpha-particle activity to water produced from all the sampled aquifers, but was not the dominant radionuclide as it is in water from the Kirkwood-Cohansey aquifer system, nor were concentrations greater than 1 pCi/L of radium-224 widespread. Gross alpha-particle activity was found to exceed the U.S Environmental Protection Agency (USEPA) Maximum Contaminant Level (MCL) of 15 pCi/L in one sample (16 pCi/L) from the Vincentown aquifer. A greater part of the gross alpha-particle activity in water from the Wenonah-Mount Laurel aquifer resulted from the decay of Ra-226 than did the gross alpha-particle activity in the other sampled aquifers; this relation is consistent with the concentration distribution of the Ra-226 itself. Concentrations of radium-224 correlate strongly with those of both radium-226 and radium-228 (Spearman correlation coefficients, r, +0.86 and +0.66, respectively). The greatest concentrations of radium-224, radium-226, and radium-228 were present in the most acidic ground water. All radium-224, radium-226, and radium-228 concentrations greater than 2.5 pCi/L were present in ground-water samples with a pH less than 5.0. The presence of combined radium-226 and radium-228 concentrations greater than 5 pCi/L in samples from the Vincentown and Wenonah-Mount Laurel aquifers and the Englishtown aquifer system was not nearly as common as in samples from the Kirkwood-Cohansey aquifer system, likely because of the slightly higher pH of water from these aquifers relative to that of Kirkwood-Cohansey aqu

New Jersey↗
USGS2011

Concentrations, loads, and sources of polychlorinated biphenyls, Neponset River and Neponset River Estuary, eastern Massachusetts

Polychlorinated biphenyls (PCBs) are known to contaminate the Neponset River, which flows through parts of Boston, Massachusetts, and empties into the Neponset River Estuary, an important fish-spawning area. The river is dammed and impassable to fish. The U.S. Geological Survey, in cooperation with the Massachusetts Department of Fish and Game, Division of Ecological Restoration, Riverways Program, collected, analyzed, and interpreted PCB data from bottom-sediment, water, and (or) fish-tissue samples in 2002, 2004-2006. Samples from the Neponset River and Neponset River Estuary were analyzed for 209 PCB congeners, PCB homologs, and Aroclors. In order to better assess the overall health quality of river-bottom sediments, sediment samples were also tested for concentrations of 31 elements. PCB concentrations measured in the top layers of bottom sediment ranged from 28 nanograms per gram (ng/g) just upstream of the Mother Brook confluence to 24,900 ng/g measured in Mother Brook. Concentrations of elements in bottom sediment were generally higher than background concentrations and higher than levels considered toxic to benthic organisms according to freshwater sediment-quality guidelines defined by the U.S. Environmental Protection Agency. Concentrations of dissolved PCBs in water samples collected from the Neponset River (May 13, 2005 to April 28, 2006) averaged about 9.2 nanograms per liter (ng/L) (annual average of monthly values); however, during the months of August (about 16.5 ng/L) and September (about 15.6 ng/L), dissolved PCB concentrations were greater than 14 ng/L, the U.S. Environmental Protection Agency's freshwater continuous chronic criterion for aquatic organisms. Concentrations of PCBs in white sucker (fillets and whole fish) were all greater than 2,000 ng/g wet wt, the U.S. Environmental Protection Agency's guideline for safe consumption of fish: PCB concentrations measured in fish-tissue samples collected from the Tileston and Hollingsworth and Walter Baker Impoundments were 3,490 and 2,450 ng/g wet wt (filleted) and 6,890 and 4,080 ng/g wet wt (whole fish). Total PCB-congener concentrations measured in the whole bodies of estuarine bait fish (common mummichog) averaged 708 ng/g wet wt. PCBs that pass from the Neponset River to the Neponset River Estuary are either dissolved or associated with particulate matter (including living and nonliving material) suspended in the water column. A small proportion of PCBs may also be transported as part of the body burden of fish and wildlife. During the period May 13, 2005 to April 28, 2006, about 5,100 g (3.8 L or 1 gal) of PCBs were transported from the Neponset River to the Neponset River Estuary. Generally, about one-half of these PCBs were dissolved in the water column and the other half were associated with particulate matter; however, the proportion that was either dissolved or particulate varied seasonally. Most PCBs transported from the river to the estuary are composed of four or fewer chlorine atoms per biphenyl molecule. The data suggest that widespread PCB contamination of the lower Neponset River originated from Mother Brook, a Neponset River tributary, starting sometime around the early 1950s or earlier. In 1955, catastrophic dam failure caused by flooding likely released PCB-contaminated sediment downstream and into the Neponset River Estuary. PCBs from this source area likely continued to be released after the flood and during subsequent rebuilding of downstream dams. Today (2007), PCBs are mostly trapped behind these dams; however, some PCBs either diffuse or are entrained back into the water column and are transported downstream by river water into the estuary or volatilize into the atmosphere. In addition to the continuing release of PCBs from historically contaminated bottom sediment, PCBs are still (2007) originating from source areas along Mother and Meadow Brook as well as other sources along the river and Boston Harbor. PCBs from the river (transported by river water) and from the harbor (transported by tidal action) appear to have contaminated parts of the Neponset River Estuary.

Massachusetts↗
USGS1997

Field screening of water quality, bottom sediment, and biota associated with irrigation drainage in the Yuma Valley, Arizona, 1995

Because of concerns expressed by the U.S. Congress and the environmental community, the Department of the Interior began a program in late 1985 to identify the nature and extent of water-quality problems induced by irrigation that might exist in the western States. Surface water, bottom sediment, and biota were collected from March through September 1995 along the lower Colorado River and in agricultural drains at nine sites in the Yuma Valley, Arizona, and analyzed for selected inorganic and organic constituents. Analyses of water, bottom sediment, and biota were completed to determine if irrigation return flow has caused, or has the potential to cause, harmful effects on human health, fish, and wildlife in the study area. Concentrations of dissolved solids in surface-water samples collected in March generally did not vary substantially from surface-water samples collected in June. Concentrations of dissolved solids ranged from 712 to 3,000 milligrams per liter and exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 500 milligrams per liter for drinking water. Concentrations of chloride in 9 of 18 water samples and concentrations of sulfate in 16 of 18 water samples exceeded the U.S. Environmental Protection Agency secondary maximum contaminant level of 250 milligrams per liter for drinking water. Calcium and sodium were the dominant cations, and chloride and sulfate were the dominant anions. The maximum selenium concentration of 8 micrograms per liter exceeded the U.S. Environmental Protection Agency aquatic-life chronic criterion of 5 micrograms per liter. Concentrations of lead in 7 of 18 water samples and concentrations of mercury in 4 of 18 water samples exceeded the aquatic-life cronic criteria of 3.2 and 0.012 micrograms per liter, respectively. Concentrations of antimony, beryllium, cadmium, and silver in the water samples were below analytical reporting limits. Arsenic was detected in 3 of 9 bottom-sediment samples, and concentrations ranged from 11 to 16 micrograms per gram. Concentrations ofaluminum, beryllium, boron, copper, lead, and zinc were highest in samples from Main Drain at southerly international boundary near San Luis, Arizona. Selenium was detected in all bottom-sediment samples, and concentrations ranged from 0.1 to 0.7 micrograms per gram. Concentrations of cadmium, europium, homium, mercury, molybdenum, silver, tantalum, tin, and uranium were below analytical reporting limits in the bottom-sediment samples. Concentrations of trace elements in bottom-sediment samples were within the ranges found in a study of soils of the western United States and did not indicate a significant accumulation of these constituents. p,p'Dichlorodiphenyldichloroethylene (commonly referred to as p,-p'-DDE) was detected in one bottom-sediment sample at a concentration of 1.4 micrograms per gram. No other organochlorine compounds were detected in the bottom-sediment samples. DDE was present in all fish and bird samples. Almost one-half of the fish samples contained DDE residues that were two times higher than the mean calculated for a national study in 1984-85. Twenty-tree percent of the fish contained more than three times the national mean. Fish from downstream parts of the Main Drain had the highest concentrations of DDE. Although concentrations of DDE in fish and in bird carcasses and eggs were above background levels, residues generally were below thresholds associated with chronic poisoning and reproductive problems in figh and wildlife. Concentrations of 18 trace elements were detected in cattail (Typha sp.) roots, freshwater clam (Corbicula fluminea), fish, and bird samples. Selenium in most fish and in livers of red-winged (Agelaius phoeniceus) and yellow-headed (Xanthocephalus xanthocephalus) blackbirds was above background concentrations but below toxic concentrations. In contrast, selenium was present in a killdeer (Charadrium vociferus) liver sample at potentially toxic con

Water-Resources Investigations Report↗
USGS2014

Transmission of chronic wasting disease in Wisconsin white-tailed deer: Implications for disease spread and management

Few studies have evaluated the rate of infection or mode of transmission for wildlife diseases, and the implications of alternative management strategies. We used hunter harvest data from 2002 to 2013 to investigate chronic wasting disease (CWD) infection rate and transmission modes, and address how alternative management approaches affect disease dynamics in a Wisconsin white-tailed deer population. Uncertainty regarding demographic impacts of CWD on cervid populations, human and domestic animal health concerns, and potential economic consequences underscore the need for strategies to control CWD distribution and prevalence. Using maximum-likelihood methods to evaluate alternative multi-state deterministic models of CWD transmission, harvest data strongly supports a frequency-dependent transmission structure with sex-specific infection rates that are two times higher in males than females. As transmissible spongiform encephalopathies are an important and difficult-to-study class of diseases with major economic and ecological implications, our work supports the hypothesis of frequency-dependent transmission in wild deer at a broad spatial scale and indicates that effective harvest management can be implemented to control CWD prevalence. Specifically, we show that harvest focused on the greater-affected sex (males) can result in stable population dynamics and control of CWD within the next 50 years, given the constraints of the model. We also provide a quantitative estimate of geographic disease spread in southern Wisconsin, validating qualitative assessments that CWD spreads relatively slowly. Given increased discovery and distribution of CWD throughout North America, insights from our study are valuable to management agencies and to the general public concerned about the impacts of CWD on white-tailed deer populations.

Wisconsin↗
USGS2003

Morphometric and histopathological parameters of gonadal development in adult common carp from contaminated and reference sites in Lake Mead, Nevada

This study examined the hypothesis that exposure to sublethal concentrations of contaminants alters the gonadal condition of feral common carp Cyprinus carpio . Adult common carp in Lake Mead, Nevada, were collected from a contaminated site (Las Vegas Bay) that receives municipal and industrial effluent and from a reference site (Overton Arm) with a relatively low level of contamination. Fish were sampled seven times over a 1-year period extending over two separate spawning seasons. Morphometric and histopathological parameters of gonadal and germ cell development were determined. In males, the pattern of seasonal changes in the gonadosomatic index (GSI) was similar between the sites and showed no clear association with site-specific seasonal temperature profiles. However, Las Vegas Bay males had consistently lower GSI values and, on one of the sampling dates, a lower proportion of sperm relative to other germ cell stages (determined histologically). Further, Las Vegas Bay males had a higher incidence of gonadal macrophage aggregates, which are putative tissue biomarkers of contaminant exposure in fishes. In females, seasonal GSI profiles, the frequency of fish with postovulatory follicles (an index of spawning activity), and the timing of new follicle recruitment all showed differences between sites, but these differences generally matched differences in water temperature profile. Also, the peak size-frequency of full-grown follicles did not differ between sites, and estimates of fecundity for the second spawning season indicated that females from the reference site unexpectedly produced a lower number of gametes. Overall, site differences in gonadal condition were observed in carp of both sexes but they seemed to be associated with site differences in contaminant levels only in males. The apparent lack of association between contaminant level and gonadal condition in female carp from mildly mesotrophic Lake Mead may indicate a lack of contaminant effects in females or a confounding effect of the higher nutrient loads in the Las Vegas Bay environment.

Nevada↗