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In-situ measurements of seismic velocities in the San Francisco Bay Region; part III

Seismic wave velocities (compressional and shear) are important parameters for estimating the seismic response characteristics of various geologic units when subjected to strong earthquake ground shaking. Seismic velocities of various units often show a strong correlation with the amounts of damage following large earthquakes and have been used as a basis for certain types of seismic zonation studies. In the current program seismic velocities have been measured at 59 locations 1n the San Francisco Bay Region. This report is the third in a series of Open-File Reports and describes the in-situ velocity measurements at locations 35-59. At each location seismic travel times are measured in drill holes, normally at 2.5-m intervals to a depth of 30 m. Geologic logs are determined from drill cuttings, undisturbed (cored) samples, and penetrometer samples. The data provide a detailed comparison of geologic and seismic characteristics and provide parameters for estimating strong earthquake ground motions quantitatively at each of the sites. A major emphasis of this program is to obtain a detailed comparison of geologic and seismic data on a regional scale for use in seismic zonation. There is a variety of geologic and seismic data available in the San Francisco Bay Region for use 1n developing the general zoning techniques which can then be applied to other areas. Shear wave velocities 1n near-surface geologic materials are of especial interest for engineering seismology and seismic zonation studies, yet in general, they are difficult to measure because of contamination by compressional waves. A comparison of various in-situ techniques by Warrick (1974) establishes the reliability of the method utilizing a "horizontal traction" source for sites underlain by bay mud and alluvium. Gibbs, and others (1975a) present data from 12 holes and establishes the reliability of the method for sites underlain by a variety of different rock units and suggest extending the measurements to a large number of sites. Data collected from the first 12 holes also provide an opportunity for developing a routine and efficient procedure for collection and reduction of the data. Gibbs and others (1975b) report preliminary comparisons of the data with the amplification data recorded from nuclear explosions, and the intensity data for the 1906 earthquake. These comparisons show that correlations exist between the three data sets. Average shear wave velocity in each geologic unit form the basis for the preliminary correlations, however, some of the geologic units (that is, granite and Franciscan Formation) exhibit a wide range of shear wave velocity. It is apparent that other factors must be considered in these units, perhaps near surface weathering or fracture spacing. Work is continuing in this area.

California↗

Spring-summer movements of bonytail in a Colorado River reservoir, Lake Mohave, Arizona and Nevada

The bonytail Gila elegans is a large-river minnow (Cyprinid) endemic to the Colorado River system of western North America. The species is federally listed as endangered, its biology poorly understood, and relatively little is known of its movements. Two short-term telemetry studies were conducted during 1996 and 1997 to assess spring-summer temporal and spatial movement patterns in Lake Mohave, Arizona and Nevada, where the largest remaining population of bonytail persists. A total of 20 bonytail were implanted with 90-day sonic transmitters. Ten fish (5 wild-caught from the Lake and 5 cove-reared: 5 females and 5 males) were implanted in May 1996 and additional 10 (7 wild-caught and 3 pond-reared: 2 females and 8 males) were implanted in April 1997, released into the lake immediately after surgery, and tracked approximately weekly through August of both years. Eight fish dispersed immediately after release in 1996, two moved up- and six moved down-lake. The five wild-caught fish moved down-lake as much as 42 km, and four of these (all males) remained in the lower most 5 km while the other (female) occupied an area about 10 km below the release site. Two cove fish moved up lake 15 and 43 km, respectively, while a third moved 4 km down-lake. Two fish were never contacted. Most locations were in shallow water along shorelines, in some instance within inundated stands of riparian vegetation. In 1997, three pond fish were surgically implanted with transmitters and released at Cottonwood Cove, Nevada. Two were not contacted again, and the other was lost 12 days post-release after moving approximately 1.4 km across the lake. Seven wild fish were captured and released at two sites in the lower portion of the lake, and all moved to downstream areas where they remained for the duration of study. Contact was lost with one fish after 3 days and another remained stationary after 13 days; the five others were tracked for 62 to 119 days. These last fish remained in the lower lake and had net movement (displacement from release site to last contact location) that averaged 5.4 km and ranged from 4.7 to 6.9 km. All net displacements were downstream. Cumulative distance traveled averaged 28.9 km and ranged from 19.9 to 33.0 km. Most fish locations during daylight hours were in deep water adjacent to the steep Nevada shore, while nighttime locations were in shallow water along gently sloping Arizona shorelines. Bonytail can move substantial distances in a short time (10s of km in a few days). Fish in both years apparently favored the same areas, where they may remain for weeks. Unmarked bonytail were observed or captured by setting nets in places favored by tagged fish, a significant result since future use of the technique may enhance our ability to monitor reintroductions, locate and document spawning, examine habitat use, and acquire desperately needed brood stock for this critically imperiled species. External tagging techniques developed for juvenile razorback sucker may provide a method of minimizing telemetry induced stress while allowing us to focus sampling on congregation sites.

Arizona, Nevada↗

Proceedings of the U.S. Geological Survey Interdisciplinary Microbiology Workshop, Estes Park, Colorado, October 15-17, 2008

Preface A U.S. Geological Survey Interdisciplinary Microbiology Workshop was held in Estes Park, Colorado, on October 15-17, 2008. Participants came from all USGS regions and disciplines. This report contains abstracts from 36 presentations and 35 poster sessions and notes from 5 breakout sessions. The seven presentation topics follow: Ecology of wildlife and fish disease Mechanisms of fish and wildlife disease Microbial ecology Geographic patterns/visualization Public health and water quality Geomicrobiology Ecosystem function The six poster session topics follow: Wildlife disease Disease detection methods Water quality Microbial ecology Metabolic processes Tools and techniques Five working groups met in breakout sessions on October 16, 2008. The highlights for each working group are summarized in this report, and their goals are listed below: Working Group I: to plan a Fact Sheet on interdisciplinary microbiology in the USGS Working Group II: to plan a USGS interdisciplinary microbiology Web site Working Group III: to suggest ways to broadcast and publicize the types of microbiology conducted at the USGS Working Group IV: to identify emerging issues in USGS interdisciplinary microbiology research Working Group V: to identify potential opportunities for interdisciplinary microbiology work at the USGS After the workshop, the USGS interdisciplinary microbiology Web site was activated in June 2009 at http://microbiology.usgs.gov/.

Scientific Investigations Report↗

Streamflow characterization and hydromodification, Indian and Kill Creek Basins, Johnson County, Kansas, 1985–2018

Urban stream restoration requires a quantitative understanding of hydromodification to provide a scientific basis for establishing, prioritizing, and monitoring stream quality improvement goals. A study by the U.S. Geological Survey, in cooperation with the Johnson County Urban stream restoration benefits from a quantitative understanding of hydromodification to provide a scientific basis for establishing, prioritizing, and monitoring stream quality improvement goals. A study by the U.S. Geological Survey, in cooperation with the Johnson County Stormwater Management Program, began in 2017 to assess streamflow conditions at U.S. Geological Survey streamgages along Indian and Kill Creeks in Johnson County, Kansas. These streams represent the most urban (Indian Creek) and least urban (Kill Creek) drainage basins in the county. The assessment used 40 streamflow indicators to characterize streamflow conditions for both streams and quantify the degree of hydromodification for Indian Creek. The 40 streamflow indicators consisted of 35 commonly used indicators for characterizing streamflow, 2 less common seasonality indicators, and 3 other indicators based on duration curves, runoff hydrographs, and streamflow percentile classes. The indicators represented five key components of the natural streamflow regime: magnitude, frequency, duration, timing, and rate of change. As part of the study, indicators were evaluated as to general utility for characterizing streamflow conditions, quantifying hydromodification, and assessing the effectiveness of implemented management practices intended to restore urban streams. Results identifying indicators that serve these purposes could be applied more generally to other streams in Johnson County to assess hydromodification and potential restoration opportunities. Although the same set of streamflow indicators may not apply to other regions, methods and results presented in this report provide guidance, techniques, and perspective for future related or similar studies elsewhere, particularly those designed to quantify hydromodification of urban streams and monitor the effectiveness of restoration efforts. Compared to Kill Creek, which, for the purposes of this study, was considered representative of a least disturbed rural reference condition, Indian Creek hydrology was determined to be substantially modified because of urbanization. Of the 35 streamflow indicators evaluated, 19 indicated a generally consistent and substantial difference between the 2 streams. Hydromodification of Indian Creek was characterized by larger annual mean and monthly mean streamflows (and, thus, larger streamflow volumes), larger low streamflows of shorter duration, larger high streamflows with increased frequency and shorter duration, faster rise and fall rates, and decreased seasonality of high and low streamflows. For the two seasonality indicators, seasonality of high and low streamflows decreased. Duration curves, runoff event hydrographs, and streamflow percentile classes also indicated differences between the two streams for specific ranges of streamflow. Indicators that were useful in identifying generally consistent and substantial differences between the two streams, and therefore demonstrating they collectively or individually may be indicators of hydromodification, included annual median and mean flows; monthly mean flows for February, July, August, September, October, November, and December; all the minimum mean flow indictors (1-day, 3-day, 7-day, 30-day, and 90-day); annual number and mean magnitude of peak flows; some of the flow pulse indicators; and rise and fall rates. Indicators determined to be marginally useful or not useful for identifying consistent and substantial streamflow differences between streams included the flashiness indicators Richards-Baker flashiness index and the fraction of the year the daily mean flow is greater than the annual mean flow, which was not expected. Municipalities are challenged by the need to restore stream quality in urbanized areas where options are limited because of existing development. Understanding hydromodification effects and implications for stream quality can help managers plan urban development that minimizes degradation of stream quality and provides insights for implementing effective management practices. Streamflow indicators identified in this report can be used to guide urban stream restoration. In particular, the most useful indicators could form the basis of numeric criteria for restoration goals aimed at achieving or progressing toward more natural streamflow conditions—and, by extension, more healthy ecosystems—by characterizing flow conditions, quantifying hydromodification, establishing stream-restoration goals, and monitoring progress toward achieving those goals as management practices are implemented.

Kansas↗

Flow routing in the Susquehanna River Basin: Part IV - Routing reservoir releases in the eastern Susqehanna river basin in New York State

Flow-routing models for six reaches of major streams in the eastern Susquehanna River basin in New York were developed and used to trace releases of water from East Sidney Lake and Whitney Point Lake to gaged points downstream. Daily streamflow during 1942-77 was modeled for the following reaches: Susquehanna River--Unadilla to Conklin, Conklin to Vestal, and Vestal to Waverly; Chenango River--Sherburne to Greene, and Greene to Chenango Forks; Tioughnioga River--Cortland to Itaska. The models were developed with convolution techniques and were based on the unit-response method of flow routing, assuming the diffusion analogy and using multilinearization. Overall accuracy of the models, as measured by the average difference between observed and simulated daily flows over the base period, was within the stated accuracy of published gaging-station records. As an example of one application of the models, hypothetical releases from East Sidney Lake and Whitney Point Lake during low flow were traced downstream to the Waverly gaging station at the lower end of the area studied. The leading edge of the East Sidney release arrived in 4 days, and the full release arrived in 6 days. The leading edge of the Whitney Point release arrived in 1 day, and the full release arrived in 3 days. (USGS)

Water-Resources Investigations Report↗

Guidelines for quality assurance and quality control of fish taxonomic data collected as part of the National Water-Quality Assessment Program

Fish community structure is characterized by the U.S. Geological Survey's National Water-Quality Assessment (NAWQA) Program as part of a perennial, multidisciplinary approach to evaluating the physical, chemical, and biological conditions of the Nation's water resources. The objective of quality assurance and quality control of fish taxonomic data that are collected as part of the NAWQA Program is to establish uniform guidelines and protocols for the identification, processing, and archiving of fish specimens to ensure that accurate and reliable data are collected. Study unit biologists, collaborating with regional biologists and fish taxonomic specialists, prepare a pre-sampling study plan that includes a preliminary faunal list and identification of an ichthyological curation center for receiving preserved fish specimens. Problematic taxonomic issues and protected taxa also are identified in the study plan, and collecting permits are obtained in advance of sampling activities. Taxonomic specialists are selected to identify fish specimens in the field and to assist in determining what fish specimens should be sacrificed, fixed, and preserved for laboratory identification, independent taxonomic verification, and long-term storage in reference or voucher collections. Quantitative and qualitative sampling of fishes follows standard methods previously established for the NAWQA Program. Common ichthyological techniques are used to process samples in the field and prepare fish specimens to be returned to the laboratory or sent to an institutional repository. Taxonomic identifications are reported by using a standardized list of scientific names that provides nomenclatural consistency and uniformity across study units.

Water-Resources Investigations Report↗

Mapping mountain pine beetle mortality through growth trend analysis of time-series landsat data

Disturbances are key processes in the carbon cycle of forests and other ecosystems. In recent decades, mountain pine beetle (MPB; Dendroctonus ponderosae) outbreaks have become more frequent and extensive in western North America. Remote sensing has the ability to fill the data gaps of long-term infestation monitoring, but the elimination of observational noise and attributing changes quantitatively are two main challenges in its effective application. Here, we present a forest growth trend analysis method that integrates Landsat temporal trajectories and decision tree techniques to derive annual forest disturbance maps over an 11-year period. The temporal trajectory component successfully captures the disturbance events as represented by spectral segments, whereas decision tree modeling efficiently recognizes and attributes events based upon the characteristics of the segments. Validated against a point set sampled across a gradient of MPB mortality, 86.74% to 94.00% overall accuracy was achieved with small variability in accuracy among years. In contrast, the overall accuracies of single-date classifications ranged from 37.20% to 75.20% and only become comparable with our approach when the training sample size was increased at least four-fold. This demonstrates that the advantages of this time series work flow exist in its small training sample size requirement. The easily understandable, interpretable and modifiable characteristics of our approach suggest that it could be applicable to other ecoregions.

Colorado↗

Toward production from gas hydrates: Current status, assessment of resources, and simulation-based evaluation of technology and potential

Gas hydrates are a vast energy resource with global distribution in the permafrost and in the oceans. Even if conservative estimates are considered and only a small fraction is recoverable, the sheer size of the resource is so large that it demands evaluation as a potential energy source. In this review paper, we discuss the distribution of natural gas hydrate accumulations, the status of the primary international R&D programs, and the remaining science and technological challenges facing commercialization of production. After a brief examination of gas hydrate accumulations that are well characterized and appear to be models for future development and gas production, we analyze the role of numerical simulation in the assessment of the hydrate production potential, identify the data needs for reliable predictions, evaluate the status of knowledge with regard to these needs, discuss knowledge gaps and their impact, and reach the conclusion that the numerical simulation capabilities are quite advanced and that the related gaps are either not significant or are being addressed. We review the current body of literature relevant to potential productivity from different types of gas hydrate deposits, and determine that there are consistent indications of a large production potential at high rates over long periods from a wide variety of hydrate deposits. Finally, we identify (a) features, conditions, geology and techniques that are desirable in potential production targets, (b) methods to maximize production, and (c) some of the conditions and characteristics that render certain gas hydrate deposits undesirable for production. Copyright 2008, Society of Petroleum Engineers.

Conference Paper↗

Toward production from gas hydrates: Current status, assessment of resources, and simulation-based evaluation of technology and potential

Gas hydrates (GHs) are a vast energy resource with global distribution in the permafrost and in the oceans. Even if conservative estimates are considered and only a small fraction is recoverable, the sheer size of the resource is so large that it demands evaluation as a potential energy source. In this review paper, we discuss the distribution of natural GH accumulations, the status of the primary international research and development (R&D) programs, and the remaining science and technological challenges facing the commercialization of production. After a brief examination of GH accumulations that are well characterized and appear to be models for future development and gas production, we analyze the role of numerical simulation in the assessment of the hydrate-production potential, identify the data needs for reliable predictions, evaluate the status of knowledge with regard to these needs, discuss knowledge gaps and their impact, and reach the conclusion that the numerical-simulation capabilities are quite advanced and that the related gaps either are not significant or are being addressed. We review the current body of literature relevant to potential productivity from different types of GH deposits and determine that there are consistent indications of a large production potential at high rates across long periods from a wide variety of hydrate deposits. Finally, we identify (a) features, conditions, geology and techniques that are desirable in potential production targets; (b) methods to maximize production; and (c) some of the conditions and characteristics that render certain GH deposits undesirable for production. Copyright ?? 2009 Society of Petroleum Engineers.

Conference Paper↗

Aquifer diffusivity of the Ohio River alluvial aquifer by the flood-wave response method

Aquifer diffusivity (T/S) was calculated for 10 sites in the alluvial aquifer adjacent to the Ohio River by observing the response of the aquifer to a flood wave in the river. The calculated type curves matched the observed aquifer response reasonably well at eight of the 10 sites. The diffusivities ranged from 0.4 ft 2 sec -1 to 10.3 ft 2 sec -1 and were generally in agreement with diffusivity values calculated from pump-test methods at two of the sites. Interference from pumping 1/2 mile upstream from one site and localized aquifer inhomogeneity at another site precluded calculation of diffusivity. Determining the shape of the ground-water recession curve may be difficult, but it can be done satisfactorily by collecting water-level data during an extended period of ground-water discharge and transposing the average recession curve to the flood period being analyzed. The flood-wave response method for estimating aquifer diffusivity provides a relatively inexpensive technique for obtaining a significant part of the data needed to predict the aquifer's response to river and pumping stresses.

Ohio River↗

Analyzing bat migration

T HE MIGRATORY MOVEIvl.ENTS OF BATS have proven ex­ tremely difficult to determine. Despite extensive efforts during the past century to track the movements of bats across landscapes, efficient methods of following small- to medium-size volant animals <240 gl for extended periods (>8 weeks) over long distances (>100 km) have not been developed. Important questions about bat migration remain unanswered: Which bats migrate? Where do they go? How far do they move? How high and fast do they fly? What are their habitat needs during migration? How do bats orient and navigate during migration? Addressing these apparently simple questions will be a considerable challenge to anyone interested in advancing the study of bat migration. In this chapter, we present direct and indirect methods used to study bat migration as well as techniques that have worked for studying bird migration that could feasibly be adapted to the study of bats.

Book chapter↗

Dimensionality reduction techniques for analyzing tsunami simulations in hazard assessment and forecasting applications

A wide selection of linear and non-linear dimensionality reduction techniques is evaluated on synthetic tsunami data that is the basis for tsunami hazard assessment and computational forecasting. The data were computed from earthquake rupture forecasts (ERFs) supplying initial generation conditions and a linear long-wave Green's function approach to efficiently calculate tsunami propagation. The dimensionality reduction techniques include various forms of principal component analysis, manifold learning, and neural networks. Both external (e.g., mutual information) and internal (silhouette) metrics are used to evaluate clustering in the reduced dimension, focusing on peak-nearshore tsunami amplitudes (PNTA) along a nearshore isobath and time-series (marigrams) at specific nearshore locations. This evaluation is intentionally scoped to cluster-based downsampling to produce probabilistic inundation maps. For our test case along the Nankai subduction zone, manifold learning methods produced the highest clustering metric scores for PNTA profiles among the examined dimensionality reduction techniques. The marigram results are less consistent, owing primarily to uncertainty in defining appropriate clusters in the original high-dimensional (ambient) space to establish a “ground truth.” A novel application of using the integrative ERF-tsunami approach is that features extracted in the reduced domain, particularly from manifold learning, can be mapped back to rupture zones along the fault. This yields targeted fault information associated with unique PNTA profiles and marigram characteristics, such as late-arriving waves. Further testing would be needed for application-specific workflows and more complex fault systems, but results from this single subduction zone case study support the consideration of non-linear techniques (e.g., manifold learning) as alternatives to linear methods.

Nankai megathrust↗

Evaluating the use of video cameras to estimate bridge scour potential at four bridges in southwestern Montana

The U.S. Geological Survey, in cooperation with the Montana Department of Transportation, installed cameras and large-scale particle image velocimetry (LSPIV) recording equipment at four sites where the U.S. Geological Survey and Montana Department of Transportation are monitoring bridge scour using other methods. Determination of stream velocities is an important component of hydraulic engineering, river ecology, and fluvial geomorphology. LSPIV is an emerging technique that can be used to estimate stream surface velocities and streamflow using video cameras. Video from the camera is referenced to known locations on streambanks, and postprocessed using computer software that calculates water surface velocity and flow direction between video frames. The goal of the study was to determine if LSPIV can increase the accuracy of current bridge scour prediction methods using video recordings from 2019 to 2021. Scour around piers is one of the primary failure mechanisms for bridges and poses threats to public safety and interstate commerce. LSPIV installations can capture the flow velocities and directions near bridge piers where other measurement methods might fail or be too dangerous. Additional benefits to the LSPIV technique were continuous data collection throughout the hydrologic cycle and enhanced safety of the methods for estimating velocity magnitude and direction during flood events. Limitations of the LSPIV technique included the angle of the camera to incoming flow; video recordings that were not usable because of ice cover, night, or high winds; and vegetation along the streambank that interfered with water flow analysis. Future applications of the LSPIV technique may continue to improve the processing of the video and reduce limitations for this process.

Montana↗

Preparation and analysis of nitrogen-bearing compounds in water for stable isotope ratio measurement

This chapter reviews methods for analyzing "natural abundance" nitrogen-bearing compounds in water for δ 15 N, δ 18 O, and δ 17 O. The techniques that are reviewed are Kjeldahl distillation and digestion, diffusion, micro diffusion, ion exchange, and microbial denitrifier methods. It overlaps the contents of the preparation of ecological and biogeochemical samples for isotope analysis and also covers sections on particulate organic nitrogen and biological samples. Nitrogen comprises 78% of the atmosphere, oxygen 21% and argon 1%. There are two stable isotopes of N are 14 N and 15 N and a wide range of oxidation numbers exhibited by nitrogen compounds. Developments of continuous-flow mass spectrometry makes it possible to determine both δ15N and δ18O values of nitrate samples. Such techniques are particularly useful for small-size samples. With decreasing sample size, possible isotopic fractionations associated with extraction from the matrix, contaminants in the reagents, and leaks will become more significant. Due to the interest in distinguishing different species of organic-N compounds, the diffusion method is applied to differentiate types of organic-N.

Book chapter↗

A novel regression method for harmonic analysis of time series

Harmonic analysis of time series is an important technique in remote sensing to reveal seasonal land surface dynamics. However, frequency selection in the harmonic analysis is often difficult because high-frequency components are useful for delineating seasonal dynamics but sensitive to noise and gaps in time series. On the other hand, it is challenging to obtain temporally continuous satellite data with high quality because of atmospheric contamination. We developed a novel regression method named Harmonic Adaptive Penalty Operator (HAPO) for harmonic analysis of unevenly distributed time series. We introduced a new penalty function to minimize unexpected fluctuations in the model, which can substantially reduce the overfitting issue of regression in time series with temporal gaps. Specifically, the new penalty function minimizes the length of the model curve and the value range difference between the model and the time series observations. We compared HAPO with three widely used regression methods (OLS: Ordinary Least Squares; LASSO: Least Absolute Shrinkage and Selection Operator; and Ridge) in different scenarios using Landsat time series data across the United States. First, we evaluated methods using the Landsat surface reflectance time series within a single year. HAPO showed low and consistent monthly Root Mean Square Deviation (RMSD) values, in which most of the time RMSD of predicted reflectance were less than 0.04. More importantly, HAPO showed consistent and less bias given varying density and irregularity of time series. Second, we evaluated methods using multi-year time series. HAPO was a better predictor of relatively short time series (< 4 years) with steady low RMSD values. When a longer time series ( 4 years) was used, all four methods showed similar RMSD values, but HAPO outperformed the other methods if there were temporal gaps. Therefore, for places with large seasonal observation gaps or for time series that are relatively short (less than 4 years), HAPO can provide more consistent and accurate results in harmonic analysis of time series.

ISPRS Journal of Photogrammetry and Remote Sensing↗

Evaluation of three aging techniques and back-calculated growth for introduced Blue Catfish from Lake Oconee, Georgia

Back-calculation of length-at-age from otoliths and spines is a common technique employed in fisheries biology, but few studies have compared the precision of data collected with this method for catfish populations. We compared precision of back-calculated lengths-at-age for an introduced Ictalurus furcatus (Blue Catfish) population among 3 commonly used cross-sectioning techniques. We used gillnets to collect Blue Catfish ( n = 153) from Lake Oconee, GA. We estimated ages from a basal recess, articulating process, and otolith cross-section from each fish. We employed the Frasier-Lee method to back-calculate length-at-age for each fish, and compared the precision of back-calculated lengths among techniques using hierarchical linear models. Precision in age assignments was highest for otoliths (83.5%) and lowest for basal recesses (71.4%). Back-calculated lengths were variable among fish ages 1–3 for the techniques compared; otoliths and basal recesses yielded variable lengths at age 8. We concluded that otoliths and articulating processes are adequate for age estimation of Blue Catfish.

Georgia↗

Comparison of American Fisheries Society (AFS) standard fish sampling techniques and environmental DNA for characterizing fish communities in a large reservoir

Recently, methods involving examination of environmental DNA (eDNA) have shown promise for characterizing fish species presence and distribution in waterbodies. We evaluated the use of eDNA for standard fish monitoring surveys in a large reservoir. Specifically, we compared the presence, relative abundance, biomass, and relative percent composition of Largemouth Bass Micropterus salmoides and Gizzard Shad Dorosoma cepedianum measured through eDNA methods and established American Fisheries Society standard sampling methods for Theodore Roosevelt Lake, Arizona. Catches at electrofishing and gillnetting sites were compared with eDNA water samples at sites, within spatial strata, and over the entire reservoir. Gizzard Shad were detected at a higher percentage of sites with eDNA methods than with boat electrofishing in both spring and fall. In contrast, spring and fall gillnetting detected Gizzard Shad at more sites than eDNA. Boat electrofishing and gillnetting detected Largemouth Bass at more sites than eDNA; the exception was fall gillnetting, for which the number of sites of Largemouth Bass detection was equal to that for eDNA. We observed no relationship between relative abundance and biomass of Largemouth Bass and Gizzard Shad measured by established methods and eDNA copies at individual sites or lake sections. Reservoirwide catch composition for Largemouth Bass and Gizzard Shad (numbers and total weight [g] of fish) as determined through a combination of gear types (boat electrofishing plus gillnetting) was similar to the proportion of total eDNA copies from each species in spring and fall field sampling. However, no similarity existed between proportions of fish caught via spring and fall boat electrofishing and the proportion of total eDNA copies from each species. Our study suggests that eDNA field sampling protocols, filtration, DNA extraction, primer design, and DNA sequencing methods need further refinement and testing before incorporation into standard fish sampling surveys.

Arizona↗

Comparison of temporal trends in VOCs as measured with PDB samplers and low-flow sampling methods

Analysis of temporal trends in tetrachloroethylene (PCE) concentration determined by two sample techniques showed that passive diffusion bag (pdb) samplers adequately sample the large variation in PCE concentrations at the site. The slopes of the temporal trends in concentrations were comparable between the two techniques, and the pdb sample concentration generally reflected the instantaneous concentration sampled by the low-flow technique. Thus, the pdb samplers provided an appropriate sampling technique for PCE at these wells. One or two wells did not make the case for widespread application of pdb samples at all sites. However, application of pdb samples in some circumstances was appropriate for evaluating temporal and spatial variations in VOC concentrations, thus, should be considered as a useful tool in hydrogeology.

Ground Water Monitoring and Remediation↗