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At least 1,099 records · Page 61Linked to original sources
USGS2009

Status and trends of the Lake Huron deepwater demersal fish ommunity, 2008

The U.S.Geological Survey Great Lakes Science Center has conducted trawl surveys to assess annual changes in the deepwater demersal fish community of Lake Huron since 1973. Since 1992, surveys have been carried out using a 21 m wing trawl towed on-contour at depths ranging from 9 to 110 m on fixed transects. Sample sites include five ports in U.S. waters with less frequent sampling near Goderich, Ontario. The 2008 fall bottom trawl survey was carried out between October 24 and November 20, 2008 and sampled only the three northern U.S. ports at DeTour, Hammond Bay, and Alpena due to mechanical problems with the research vessel and prolonged periods of bad weather. Therefore, all data presented for 2008 are based on samples collected from these ports. Compared to previous years, alewife populations in Lake Huron remain at low levels after collapsing in 2004. Age-0 alewife density and biomass appears to have increased slightly but overall levels remain near the nadir observed in 2004. Density and biomass of adult and juvenile rainbow smelt showed a decrease from 2007 despite record-high abundance of juveniles observed in 2005, suggesting recruitment was low. Numbers of adult and juvenile bloater were low despite recent high year-classes. Abundances for most other prey species were similar to the low levels observed in 2005 - 2007. We captured one wild juvenile lake trout in 2008 representing the fifth consecutive year that wild lake trout were captured in the survey. Based on pairwise graphical comparisons and nonparametric correlation analyses, dynamics of prey abundance at the three northern ports followed lakewide trends since 1992. Density of benthic macroinvertebrates was at an all-time low in 2008 since sampling began in 2001. The decline in abundance was due to decreases in all taxonomic groups and a large reduction in recruitment of quagga mussels. Density of Diporeia at northern ports in 2008 was the lowest observed. Diporeia were found only at 73-m sites of three ports sampled in northern Lake Huron. While no lakewide estimate of prey biomass was calculated due to the limited spatial scope of the 2008 survey, existing data suggest prey biomass remains depressed. Prey available to salmonids during 2009 will likely be small alewives, small rainbow smelt and small bloaters. Predators in Lake Huron will continue to face potential prey shortages.

Lake Huron↗
USGS2016

The Chief Joseph Hatchery Program 2013 Annual Report

The Chief Joseph Hatchery is the fourth hatchery obligated under the Grand Coulee Dam/Dry Falls project, originating in the 1940s. Leavenworth, Entiat, and Winthrop National Fish Hatcheries were built and operated as mitigation for salmon blockage at Grand Coulee Dam, but the fourth hatchery was not built, and the obligation was nearly forgotten. After the Colville Tribes successfully collaborated with the United States to resurrect the project, planning of the hatchery began in 2001 and construction was completed in 2013. The monitoring program began in 2012 and adult Chinook Salmon were brought on station for the first time in June 2013. BPA is the primary funding source for CJH, and the Mid-Columbia PUDs (Douglas, Grant and Chelan County) have entered into cost-share agreements with the tribes and BPA in order to meet some of their mitigation obligations. The CJH production level was set at 60% in 2013 in order to train staff and test hatchery facility systems during the first year of operation. Leavenworth National Fish Hatchery (LNFH) provided 422 Spring Chinook broodstock in June, 2013; representing the official beginning of CJH operations. In July and August the CCT used a purse seine vessel to collect 814 summer/fall Chinook as broodstock that were a continuation and expansion of the previous Similkameen Pond program. In-hatchery survival for most life stages exceeded survival targets and, as of April 2014, the program was on track to exceed the 60% production target for its start-up year. The CJH monitoring project collected field data to determine Chinook population status, trend, and hatchery effectiveness centered on five major activities; 1) rotary screw traps (juvenile outmigration, natural-origin smolt PIT tagging) 2) beach seine (naturalorigin smolt PIT tagging) 3) lower Okanogan adult fish pilot weir (adult escapement, proportion of hatchery-origin spawners [pHOS], broodstock) 4) spawning ground surveys (redd and carcass surveys)(viable salmonid population [VSP] parameters) 5) eDNA collection (VSP parameter—distribution/spatial structure). Adult summer/fall Chinook spawning escapement in 2013 was estimated to be 8,193, with more than 6,227 natural-origin spawners, which exceeded the recent five year and long term averages. The values for pHOS (0.24) and proportion of natural influence (PNI) (0.79) in 2013 exceeded the objectives (0.67), but the five year averages fell short of the goals (0.39 and 0.62, respectively). An Annual Program Review (APR) was held in March, 2014 to share hatchery production and monitoring data, review the salmon forecast for the upcoming year, and develop action plans for the hatchery, selective harvest, and monitoring projects. Based on a strong pre-season forecast of 67,500 Upper Columbia summer/fall Chinook, the plan for 2014 is to operate the hatchery at full program levels of 2 million summer/fall Chinook and 900,000 spring Chinook. To maximize PNI, broodstock for the integrated program should Chief Joseph Hatchery Program 2013 Annual Report 3 be 100% natural-origin broodstock (NOB) and CCT should plan to harvest their full allocation with the selective harvest program removing as many adult hatchery Chinook as possible with the purse seine, the weir, and at the hatchery ladder.

Report↗
USGS2007

Efficiently estimating salmon escapement uncertainty using systematically sampled data

Fish escapement is generally monitored using nonreplicated systematic sampling designs (e.g., via visual counts from towers or hydroacoustic counts). These sampling designs support a variety of methods for estimating the variance of the total escapement. Unfortunately, all the methods give biased results, with the magnitude of the bias being determined by the underlying process patterns. Fish escapement commonly exhibits positive autocorrelation and nonlinear patterns, such as diurnal and seasonal patterns. For these patterns, poor choice of variance estimator can needlessly increase the uncertainty managers have to deal with in sustaining fish populations. We illustrate the effect of sampling design and variance estimator choice on variance estimates of total escapement for anadromous salmonids from systematic samples of fish passage. Using simulated tower counts of sockeye salmon Oncorhynchus nerka escapement on the Kvichak River, Alaska, five variance estimators for nonreplicated systematic samples were compared to determine the least biased. Using the least biased variance estimator, four confidence interval estimators were compared for expected coverage and mean interval width. Finally, five systematic sampling designs were compared to determine the design giving the smallest average variance estimate for total annual escapement. For nonreplicated systematic samples of fish escapement, all variance estimators were positively biased. Compared to the other estimators, the least biased estimator reduced bias by, on average, from 12% to 98%. All confidence intervals gave effectively identical results. Replicated systematic sampling designs consistently provided the smallest average estimated variance among those compared.

American Fisheries Society Symposium↗
USGS2015

Evaluation of stream flow effects on smolt survival in the Yakima River Basin, Washington, 2012-2014

The influence of stream flow on survival of emigrating juvenile (smolts) Pacific salmon Oncorhynchus spp. and steelhead trout O. mykiss is of key management interest. However, few studies have quantified flow effects on smolt migration survival, and available information does not indicate a consistent flow-survival relationship within the typical range of flows under management control. It is hypothesized that smolt migration and dam passage survival are positively correlated with stream flow because higher flows increase migration rates, potentially reducing exposure to predation, and reduce delays in reservoirs. However, available empirical data are somewhat equivocal concerning the influence of flow on smolt survival and the underlying mechanisms driving this relationship. Stream flow effects on survival of emigrating anadromous salmonids in the Yakima Basin have concerned water users and fisheries managers for over 20 years, and previous studies do not provide sufficient information at the resolution necessary to inform water operations, which typically occur on a small spatiotemporal scale. Using a series of controlled flow releases from 2012-2014, combined with radio telemetry, we quantified the relationship between flow and smolt survival from Roza Dam 208 km downstream to the Yakima River mouth, as well as for specific routes of passage at Roza Dam. A novel multistate mark-recapture model accounted for weekly variation in flow conditions experienced by radio-tagged fish. Groups of fish were captured and radio-tagged at Roza Dam and released at two locations, upstream at the Big Pines Campground (river kilometer [rkm] 211) and downstream in the Roza Dam tailrace (rkm 208). A total of 904 hatchery-origin yearling Chinook salmon O. tshawytscha were captured in the Roza Dam fish bypass, radio-tagged and released upstream of Roza Dam. Two hundred thirty seven fish were released in the tailrace of Roza Dam. Fish released in the tailrace of Roza Dam were tagged concurrently with fish released upstream of the dam using identical tagging methods. Tagging and release events were conducted to target a range of flow conditions indicative of flows observed during the typical migration period (March-May) for juvenile spring Chinook salmon in the Yakima River. Three, five and four separate upstream releases were conducted in 2012, 2013, and 2014 respectively, and at least 43 fish were released alive on each occasion. The release sample sizes in 2014 were much larger (~130) compared to previous years for the purpose of increasing precision of survival estimates across the range of flows tested. Migration movements of radio-tagged spring Chinook salmon smolts were monitored with an array of telemetry receiver stations (fixed sites) that extended 208 rkm downstream from the forebay of Roza Dam to the mouth of the Yakima River. Fixed monitoring sites included the forebay of Roza Dam (rkm 208), the tailrace of Roza Dam (rkm 207.9), the mouth of Wenas Creek (rkm 199.2), the mouth of the Naches River (two sites, rkm 189.4), Sunnyside Dam (two sites, rkm 169.1), Prosser Dam (rkm 77.2), and the mouth of the Yakima River (two sites, rkm2 3). This array segregated the study area into four discrete reaches in which survival of tagged fish was estimated. Aerial and underwater antennas were also used to monitor tagged fish at Roza Dam. Aerial antennas were located in the forebay, on the East gate, on the West gate, and in the tailrace of Roza Dam. Underwater antennas were located in the fish bypass, upstream of the East gate, and upstream of the West gate to collect route-specific passage data for tagged fish. Additional years of data collection and analysis could alter or improve our understanding of the influence of flow and other environmental factors on smolt survival in the Yakima River. Nevertheless, during 2012-2014, yearling hatchery Chinook salmon smolt emigration survival was significantly associated with stream flow in the

Report↗
USGS2009

Influence of a weak field of pulsed DC electricity on the behavior and incidence of injury in adult Steelhead and Pacific Lamprey

Predation by pinnipeds, such as California sea lions Zalophus californianus, Pacific harbor seals Phoca vitulina, and Stellar sea lions Eumetopias jubatus on adult Pacific salmon Oncorhynchus spp in the lower Columbia River has become a serious concern for fishery managers trying to conserve and restore runs of threatened and endangered fish. As a result, Smith-Root, Incorporated (SRI; Vancouver, Washington), manufacturers of electrofishing and closely-related equipment, proposed a project to evaluate the potential of an electrical barrier to deter marine mammals and reduce the amount of predation on adult salmonids (SRI 2007). The objectives of their work were to develop, deploy, and evaluate a passive, integrated sonar and electric barrier that would selectively inhibit the upstream movements of marine mammals and reduce predation, but would not injure pinnipeds or impact anadromous fish migrations. However, before such a device could be deployed in the field, concerns by regional fishery managers about the potential effects of such a device on the migratory behavior of Pacific salmon, steelhead O. mykiss, Pacific lampreys Entoshpenus tridentata, and white sturgeon Acipenser transmontanus, needed to be addressed. In this report, we describe the results of laboratory research designed to evaluate the effects of prototype electric barriers on adult steelhead and Pacific lampreys.

Report↗
USGS2009

Adult chinook salmon passage at Little Goose Dam in relation to spill operations

Spill patterns at Little Goose Dam in 2007 were modified in anticipation of a spillway weir installation intended to improve downstream passage of juvenile salmonids. However, in spill pattern was associated with reduced daily counts of adult salmon passing the dam. Consequently, the behaviors and upstream passage times of radio-tagged adult spring–summer Chinook salmon were evaluated in response to three spillway discharge patterns at Little Goose Dam during 2008. Simultaneously, tailrace conditions were characterized by monitoring the downstream paths of GPS-equipped drogues. Two of the spill treatments (i.e., Bulk and Alternate) were variations of patterns thought to mimic those produced if a spillway weir was installed. The third treatment (Uniform) was characterized by spilling similar volumes of water through most spillbays.

Washington↗
USGS2007

Wind River Watershed Restoration: Annual report April 2006 to March 2007

This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period April 2006 through March 2007 under Bonneville Power Administration (BPA) contract 26922. During this period, we collected temperature, flow, and habitat data to characterize physical habitat condition and variation within and among tributaries and mainstem sections in the Wind River subbasin. We also conducted electrofishing and snorkeling surveys to determine juvenile salmonid populations within select study areas throughout the subbasin. Portions of this work were completed with additional funding from U.S. Fish and Wildlife Service (USFWS) and the Lower Columbia Fish Enhancement Group (LCFEG). Funding from USFWS was for work to contribute to a study of potential interactions between introduced Chinook salmon Oncorhynchus tshawytscha and wild steelhead O. mykiss. Funding from LCFEG was for work to evaluate the effects of nutrient enrichment in small streams. A statement of work (SOW) was submitted to BPA in March 2006 that outlined work to be performed by USGS-CRRL. The SOW was organized by work elements, with each describing a research task. This report summarizes the progress completed under each work element.

Washington↗
USGS2007

Wind River watershed restoration: Annual Report April 2004 - March 2005

During 2004, researchers from U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) collected temperature, flow, and habitat data to characterize physical habitat condition and variation within and among tributaries and mainstem sections in the Wind River subbasin. Juvenile salmonid population surveys were conducted within select study areas throughout the subbasin. We expanded our survey coverage of the mainstem Wind River to a reach in the vicinity of Carson National Fish Hatchery to assess effects of non-indigenous Chinook on native steelhead. These efforts add to a database of habitat and fish data collected in the Wind River since 1996. This research contributes to the Wind River Restoration Project, which includes active stream habitat restoration and monitoring of adult and juvenile steelhead populations.

Washington↗
USGS2007

Wind River Watershed Restoration: Annual Report April 2005 - March 2006

This report summarizes work completed by U.S. Geological Survey’s Columbia River Research Laboratory (USGS-CRRL) in the Wind River subbasin during the period April 2005 through March 2006 under Bonneville Power Administration (BPA) contract 22095. During this period, we collected temperature, flow, and habitat data to characterize habitat condition and variation within and among tributaries and mainstem sections in the Wind River subbasin. We also conducted electrofishing and snorkeling surveys to determine juvenile salmonid populations within select study areas throughout the subbasin. Portions of this work were completed with additional funding from U.S. Fish and Wildlife Service (USFWS) and the Lower Columbia Fish Enhancement Group (LCFEG).

Washington↗
USGS2010

Unusual subterranean aggregations of the California Giant Salamander, Dicamptodon ensatus

Larval Dicamptodon are one of the most abundant vertebrates in headwater streams in the Pacific Northwest. Their numbers and biomass can exceed those of all other amphibians, and of salmonid fishes. By contrast, metamorphosed Dicamptodon are only found infrequently, usually during formal surveys using pitfall traps, cover boards, or time constrained surveys However, we found two aggregations (23 and 27 individuals) of metamorphosed Dicamptodon ensatus during a culvert removal project at Point Reyes National Seashore, California. Furthermore, we found an additional 23 terrestrial D. ensatus in terrestrial habitat adjacent to the culverts. We did not expect these aggregations because metamorphosed individuals are so rarely encountered, and aggregations are likely to increase competition and predation in a species known to feed regularly on vertebrate prey. Deteriorating culverts might provide an unusually high-quality habitat that leads to aggregations such as we describe. Our observations may provide insight into the natural haunts of D. ensatus—underground burrows or caverns—and if so, then aggregations may be normal, but rarely seen.

Herpetological Conservation and Biology↗
USGS2002

Elevated temperature exacerbates Ichthyophonus infections in buffalo sculpin

High incidences of Ichthyophonus hoferi, a parasite primarily of marine and estuarine fishes, have recently been reported in rockfishes and Pacific herring from the eastern North Pacific (Kent et al 2001, Hershberger et al 2002). Taxonomic position of I. hoferi remains unresolved, but recent phylogenetic studies have grouped the organism with Dermocystidium, Psorospermium, the rosette agent of salmonids, and Rhinosporidium in the Mesomycetozoa, a novel clade of protists near the animal-fungal divergence (Herr et al 1999). Genetic differences among isolates from the east coast of North America indicate that more than one species of Ichthyophonus exist (Rand et al 2000), and different species have likely been assigned the same name based on morphological characteristics. Therefore, hereafter in this manuscript, the organism will be referred to as Ichthyophonus .

Fish Health Newsletter↗
USGS1989

Assessment of smolt condition for travel time analysis. Annual report 1988

Estimates of migration rates and travel times of juvenile salmonids within index reaches of the Columbia River basin are collected through the Smolt Monitoring Program for use by the Fish Passage Center. With increased reliance upon travel time estimates in 1988 by the Fish Passage Center, this study was implemented to monitor the biological attributes of juvenile chinook salmon Oncorhynchus tshawytscha and steelhead trout 0.- mykiss used for the travel time estimates, The physiological ability of fish to respond to stress was assessed by measuring levels of plasma cortisol, glucose, and chloride before and after a stress-challenge test. Most mid-Columbia and Snake river groups responded normally to the stress challenge exhibiting an increase in plasma glucose and cortisol and a slight decrease in chloride. Fish trucked to release sites were more stressed than those released directly from the hatchery, but most still responded to the stress challenge test normally. An abnormal or extreme stress response occurred when there were deviations from preferred protocol, disease problems at hatcheries, or when fish were trucked over long periods (7h). The development of smoltification was evaluated by measuring gill Na+K+-ATPase, plasma thyroxine, purines, and body morphology. Most groups were similar at the hatcheries but differed as the migration to McNary Dam proceeded. Gill ATPase activity increased 2-3 fold during the first 20 days of migration, after which it changed little. Fish with longer in-river travel times appeared to be more smolted than those which were in the river for a shorter period of time. The prevalence of bacterial kidney disease (BKD) in spring chinook salmon was evaluated using the enzyme linked immunosorbent assay (ELISA) and fluorescent antibody technique (FAT). Prevalence of BKD in groups tested using the ELISA method was as high as 99% at some downstream locations. A review of indices is presented as a guide, to the development of an index of smolt condition and preliminary data are presented. An index could be used as a tool to synthesize information on fish condition to assist with management and evaluation of the Water Budget.

Report↗
USGS2004

History and effects of hatchery salmon in the Pacific

There has been a long history of production of hatchery salmon along the Pacific coast - from California’s first efforts in the 1870s using eggs from chinook and rainbow trout to the recent large-scale production hatcheries for pink salmon in Japan and the Russian Far East. The rationale for this production has also varied from replacement of fish lost in commercial ocean harvests to mitigation and restoration of salmon in areas where extensive habitat alteration has reduced salmonid viability and abundance. Over the years, we have become very successful in producing a certain type of product from salmon hatcheries, but until recently we seldom questioned the impacts the production and release of hatchery fish may have on freshwater and marine aquatic ecosystems and on the sustainability of sympatric wild salmon populations. This paper addresses the history of hatcheries around the Pacific Rim and considers potential negative implications of hatchery-produced salmon through discussions of biological impacts and biodiversity, ecological impacts and competitive displacement, fish and ecosystem health, and genetic impacts of hatchery fish as threats to wild populations of Pacific salmon.

Speaking for the Salmon↗
USGS2017

Snake River Fall Chinook Salmon life history investigations

Predation by nonnative fishes is one factor that has been implicated in the decline of juvenile salmonids in the Pacific Northwest. Impoundment of much of the Snake and Columbia rivers has altered food webs and created habitat favorable for species such as Smallmouth Bass Micropterus dolomieu . Smallmouth Bass are common throughout the Columbia River basin and have become the most abundant predator in lower Snake River reservoirs (Zimmerman and Parker 1995). This is a concern for Snake River Fall Chinook Salmon Oncorhynchus tshawytscha (hereafter, subyearlings) that may be particularly vulnerable due to their relatively small size and because their main-stem rearing habitats often overlap or are in close proximity to habitats used by Smallmouth Bass (Curet 1993; Tabor et al. 1993). Concern over juvenile salmon predation spawned a number of large-scale studies to quantify its effect in the late 1980s, 1990s, and early 2000s (Poe et al. 1991; Rieman et al. 1991; Vigg et al. 1991; Fritts and Pearsons 2004; Naughton et al. 2004). Smallmouth Bass predation represented 9% of total salmon consumption by predatory fishes in John Day Reservoir, Columbia River, from 1983 through 1986 (Rieman et al. 1991). In transitional habitat between the Hanford Reach of the Columbia River and McNary Reservoir, juvenile salmon (presumably subyearlings) were found in 65% of Smallmouth Bass (>200 mm) stomachs and comprised 59% of the diet by weight (Tabor et al. 1993). Within Lower Granite Reservoir on the Snake River, Naughton et al. (2004) showed that monthly consumption (based on weight) ranged from 5% in the upper reaches of the reservoir to 11% in the forebay. However, studies in the Snake River were conducted soon after Endangered Species Act (ESA) listing of Snake River Fall Chinook Salmon (NMFS 1992). During this time, Fall Chinook Salmon abundance was at an historic low, which may explain why consumption rates were relatively low compared to those from studies conducted in the Columbia and Yakima rivers where abundance was higher (e.g., Tabor et al. 1993; Fritts and Pearsons 2004). We speculate that predation on subyearlings by Smallmouth Bass in the Snake River may have increased in recent years for several reasons. Since their ESA listing, recovery measures implemented for Snake River Fall Chinook salmon have resulted in a large increase in the juvenile population (Connor et al. 2013). Considering that subyearlings probably now make up a larger portion of the forage fish population, it is plausible they should make up a large portion of Smallmouth Bass diets. Second, migrating subyearlings delay downstream movement in the transition zones of the Clearwater River and Snake River for varying lengths of time (Tiffan et al. 2010), which increases their exposure and vulnerability to predators. Spatial overlap in locations of Smallmouth Bass and subyearlings that died during migration provides support for this (Tiffan et al. 2010). Finally, the later outmigration of subyearlings from the Clearwater River results in their presence in Lower Granite Reservoir during the warmest summer months when predation rates of Smallmouth Bass should be highest. In 2016, we focused our efforts on Smallmouth Bass predation in Lower Granite Reservoir downstream of the transition zones and the confluence area where we worked during 2012–2015. Similar to past years, our first objective was to quantify Smallmouth Bass consumption rates of subyearlings, determine relative bass abundance, and describe bass diets. In addition, Tiffan et al. (2016a) posited that predation risk to subyearlings may be higher in shoreline habitats that are more suitable for Smallmouth Bass and lower in shoreline habitats that are more suitable for subyearlings. To test this hypothesis, our second objective examines the relationship between Smallmouth Bass predation of subyearlings and habitat suitability.

Idaho, Washington↗
USGS1996

Fish egg injection as an alternative exposure route for early life stage toxicity studies: Description of two unique methods: Chapter 4

In the environment, lipophilic contaminants such as halogenated aromatic hydrocarbons (HAHs, e.g., polychlorinated biphenyls, PCBs) and polycyclic aromatic hydrocarbons (PAHs, e.g., benzo[a]pyrene) readily bioaccumulate in fish, and the bioaccumulation of these lipophilic chemicals by adult fish may have significant consequences on the development and survival of their offspring. Halogenated and polycyclic aromatic hydrocarbons translocate from adult female body stores into eggs during oocyte maturation, and early life stages of fish are often more sensitive than adults to the toxicity of these chemicals. Thus, the presence of persistent, bioaccumulative contaminants in the environment may pose a risk to fish early life stage survival and ultimately reduce recruitment into the adult population. Typically, standard early life stage toxicity studies exposed embryos, larvae, and juveniles to graded concentrations of waterborne toxicants, and dose-response relationships are based on the concentrations of chemicals in the water. However, use of waterborne exposure to assess the toxicity of persistent, bioaccumulative contaminants, such as HAHs and PAHs, has two significant drawbacks. First, uptake of hydrophobic chemicals, such as HAHs and PAHs, into the developing embryo from water is not a significant route of exposure in the environment since concentrations of these chemicals freely dissolved in water are extremely low. Rather, maternal deposition into developing oocytes is the most significant source of these chemicals to the embryo. Second, the dose received by the target tissue, in this case the developing embryo, is the most accurate predictor of the toxic response, and since extrapolation from water concentrations of the chemical to egg concentrations is required, the exact dose received by the embryo can only be estimated, often with large uncertainty. Due to these drawbacks, it is important to develop an alternative exposure method that will directly expose the developing embryo without the need to chronically expose adult fish with subsequent natural deposition of hydrophobic chemicals into the oocytes. Fish egg injection provides this exposure route. Embryos are exposed directly after fertilization with known doses of contaminants, the dose is delivered prior to critical developmental events, and extrapolation of the dose received by the embryo is not needed. We have developed two unique fish egg injection methods as alternative routes of exposure for fish early life stage toxicity studies of lipophilic environmental contaminants. With either method, individual fish eggs are injected with a known dose of chemical. The first approach, a microinjection method, originally developed to assess the developmental toxicity of HAH congeners to early life stages of salmonids, utilizes micro-syringes, 30- gauge stainless steel injection needles, and micro- to nanoliter injection volume. The second approach, a nano-injection method, utilizes glass capillary micropipettes with 2 to 10 µm tips as injection needles, and nano- to picoliter injection volume, allowing injection of nearly any size of fish egg. Both of these egg injection methods allow an investigator to assess the toxicity of lipophilic environmental contaminants to early life stages of fish in a manner that realistically reflects environmental exposure and allows accurate quantitation of the dose to the developing embryo. These injection techniques, however, are not limited to use with only lipophilic chemicals. Since the developmental toxicity of many environmental contaminants ultimately depends on the dose received by the embryo, these egg injection methods could serve as a realistic exposure route in many fish early life stage toxicity studies.

Book chapter↗
USGS1996

Behavioral avoidance as evidence of injury to fishery resources: Applications to natural resource damage assessment

Natural Resource Damage Assessment (NRDA) provisions enacted under Comprehensive Environmental Response Compensation and Liability Act (CERCLA) and the Oil Pollution Act (OPA) empower natural resource trustees to seek compensation for environmental injury resulting from the release of oil or hazardous substances. Under NRDA regulations promulgated under CERCLA, fish avoidance behavior is recognized as an accepted injury, and may be used to support damage claims. In support of an ongoing damage assessment, tests were conducted to determine if avoidance of ambient metals concentrations may contribute to reductions in local salmonid populations. In laboratory tests, rainbow trout ( Oncorhynchus mykiss ) and brown trout ( Salmo trutta ) avoided mixtures of metals (Cd, Cu, Pb, and Zn) at concentrations that occur in impacted river reaches at a contaminated site (Clark Fork River, MT). Avoidance of metal contamination may contribute to population reductions and preclude restoration of instream populations by prohibiting movement of fish into contaminated areas of the river from uncontaminated tributaries. Laboratory avoidance tests were performed at two testing facilities. The similar avoidance responses observed at the two laboratories demonstrated the reproducibility of avoidance measures.

Book chapter↗
USGS2017

Detecting Renibacterium salmoninarum in wild brown trout by use of multiple organ samples and diagnostic methods

Renibacterium salmoninarum, the causative agent of salmonid bacterial kidney disease (BKD), is endemic in many wild trout species in northerly regions. The aim of the present study was to determine the optimal R. salmoninarum sampling/testing strategy for wild brown trout (Salmo trutta L.) populations in Iceland. Fish were netted in a lake and multiple organs—kidney, spleen, gills, oesophagus and mid-gut—were sampled and subjected to five detection tests i.e. culture, polyclonal enzyme-linked immunosorbent assay (pELISA) and three different PCR tests. The results showed that each fish had encountered R. salmoninarum but there were marked differences between results obtained depending on organ and test. The bacterium was not cultured from any kidney sample while all kidney samples were positive by pELISA. At least one organ from 92.9% of the fish tested positive by PCR. The results demonstrated that the choice of tissue and diagnostic method can dramatically influence the outcome of R. salmoninarum surveys.

Bulletin of the European Association of Fish Patho↗
USGS2005

Non-lethal estimation of body composition of Yukon River salmon

Because of the importance of Chinook salmon to commercial and subsistence fisheries on the Yukon River, further study of the factors that may affect the success of this species and our ability to manage the fisheries is warranted. Critical to these studies is the determination of the amount of lipids (fat) stored and available to the fish as its primary energy source for migration and spawning. Recent developments of Bioelectrical Impedance Analysis (BIA) promise a simple, non-lethal means of estimating proximate composition (e.g. fat, protein, water content) for field applications with fish. The goal of the project was to develop BIA models for Chinook salmon from the Yukon River watershed that would permit the non-lethal estimation of body proximate composition for use in field studies. Our results clearly demonstrated that BIA can be used to estimate proximate composition and energy density of salmon. While some minor refinements were suggested, the methodology can be used in a wide variety of field applications. For instance, application of the BIA models to predict energy levels of fish during their migration will allow evaluation of management programs, while also yielding data that can be used to evaluate energy use along the migratory path. Correlations of energy level with ongoing tagging, radio-tracking, and genetic studies also have the potential to allow managers and scientists to understand the relationship between fat content and distance to spawning location. These models have the potential for application to this species in other river systems. They also provide tools for a variety of other scientific investigation such as: 1) differences in energy stores in spawning and recruitment success; 2) effects of global warming on migratory salmonid stocks; and 3) differences in annual flow and temperature regiments upon migratory energy costs and resulting recruitment success.

Alaska, Yukon↗