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A 1500-year record of climatic and environmental change in Elk Lake, Minnesota I: Varve thickness and gray-scale density

The deepest part (29.5 m) of Elk Lake, Clearwater County, northwestern Minnesota, contains a complete Holocene section that is continuously varved. The varve components are predominantly autochthonous (CaCO3, organic matter, biogenic silica, and several iron and manganese minerals), but the varves do contain a minor detrital-clastic (aluminosilicate) component that is predominantly wind-borne (eolian) and provides an important record of atmospheric conditions. Singular spectrum analysis (SSA) and wavelet analysis of varve thickness recognized significant periodicities in the multicentennial and multidecadal bands that varied in power (i.e., variable significance) and position (i.e., variable period) within the periodic bands. Persistent periodicities of about 10, 22, 40, and 90 years, and, in particular, multicentennial periodicities in varve thickness and other proxy variables are similar to those in spectra of radiocarbon production, a proxy for past solar activity. This suggests that there may be a solar control, perhaps through geomagnetic effects on atmospheric circulation. Multicentennial and multidecadal periodicities also occur in wavelet spectra of relative gray-scale density. However, gray-scale density does not appear to correlate with any of the measured proxy variables, and at this point we do not know what controlled gray scale.

Journal of Paleolimnology↗

Climatic limits on foliar growth during major droughts in the Southwestern U.S.A.

Pronounced droughts during the 1950s and 2000s in the Southwestern U.S.A. (SW) provide an opportunity to compare mesoscale ecosystem responses to anomalously dry conditions before and during the regional warming that started in the late 1970s. This year-round warming has produced fewer cool season freezes, losses in regional snowpack, an 8-10 day advance in spring onset, and hotter summers, all of which should affect vegetation differently across seasons and elevations. Here, we examine indices that represent climatic limits on foliar growth for both drought periods, and evaluate these indices for areas that experienced tree mortality during the 2000s drought. Relative to the 1950s drought, warmer conditions during the 2000s drought decreased the occurrence of temperatures too low for foliar growth at lower elevations in winter and higher elevations in summer. Higher vapor pressure deficits (VPDs) largely driven by warmer temperatures in the more recent drought were more limiting to foliar growth from spring through summer at lower and middle elevations. At many locations where tree mortality occurred during the 2000s drought, low-temperature constraints on foliar growth were extremely unlimiting, whereas VPD constraints were extremely limiting from early spring through late autumn. Our analysis shows that in physiographically complex regions like the SW, seasonality and elevational gradients are important for understanding vegetative responses to warming. It also suggests that continued warming will increase the degree to which VPD limits foliar growth during future droughts, and expand its reach to higher elevations and other seasons.

Journal of Geophysical Research G: Biogeosciences↗

Influences of water and sediment quality and hydrologic processes on mussels in the Clinch River

Segments of the Clinch River in Virginia have experienced declining freshwater mussel populations during the past 40 years, while other segments of the river continue to support some of the richest mussel communities in the country. The close proximity of these contrasting reaches provides a study area where differences in climate, hydrology, and historic mussel distribution are minimal. The USGS conducted a study between 2009 and 2011 to evaluate possible causes of the mussel declines. Evaluation of mussel habitat showed no differences in physical habitat quality, leaving water and sediment quality as possible causes for declines. Three years of continuous water-quality data showed higher turbidity and specific conductance in the reaches with low-quality mussel assemblages compared to reaches with high-quality mussel assemblages. Discrete water-quality samples showed higher major ions and metals concentrations in the low-quality reach. Base-flow samples contained high major ion and metal concentrations coincident to low-quality mussel populations. These results support a conceptual model of dilution and augmentation where increased concentrations of major ions and other dissolved constituents from mined tributaries result in reaches with declining mussel populations. Tributaries from unmined basins provide water with low concentrations of dissolved constituents, diluting reaches of the Clinch River where high-quality mussel populations occur.

Tennessee, Virginia↗

Adaptive management for soil ecosystem services

Ecosystem services provided by soil include regulation of the atmosphere and climate, primary (including agricultural) production, waste processing, decomposition, nutrient conservation, water purification, erosion control, medical resources, pest control, and disease mitigation. The simultaneous production of these multiple services arises from complex interactions among diverse aboveground and belowground communities across multiple scales. When a system is mismanaged, non-linear and persistent losses in ecosystem services can arise. Adaptive management is an approach to management designed to reduce uncertainty as management proceeds. By developing alternative hypotheses, testing these hypotheses and adjusting management in response to outcomes, managers can probe dynamic mechanistic relationships among aboveground and belowground soil system components. In doing so, soil ecosystem services can be preserved and critical ecological thresholds avoided. Here, we present an adaptive management framework designed to reduce uncertainty surrounding the soil system, even when soil ecosystem services production is not the explicit management objective, so that managers can reach their management goals without undermining soil multifunctionality or contributing to an irreversible loss of soil ecosystem services.

Journal of Environmental Management↗

Nitrogen and carbon flow from rock to water: Regulation through soil biogeochemical processes, Mokelumne River watershed, California, and Grand Valley, Colorado

Soil denitrification is an ecologically important nitrogen removal mechanism that releases to the atmosphere the greenhouse gas N2O, an intermediate product from the reduction of NO3- to N 2. In this study we evaluate the relationship between soil carbon and denitrification potential in watersheds with bedrock acting as a nonpoint source of nitrogen, testing the hypothesis that nitrate leaching to stream water is in part regulated by denitrification. Two sites, one in a Mediterranean climate and the other in an arid climate, were investigated to understand the interplay between carbon and denitrification potential. Both sites included carbonaceous bedrock with relatively high nitrogen concentrations (> 1,000 mg N kg-1) and had low background nitrogen concentrations in surface and groundwater. There was a net accumulation of carbon and nitrogen in soil relative to the corresponding bedrock, with the exception of carbonaceous shale from the arid site. There the concentration of carbon in the soil (15,620 mg C kg-1) was less than the shale parent (22,460 mg C kg-1), consistent with the bedrock being a source of soil carbon. Rates of denitrification potential (0.5-83 ??g N kg-1 hr-1) derived from laboratory incubations appeared to be related to the ratio of dissolved organic carbon and nitrate extracted from soils. These data indicate that microbial processes such as denitrification can help maintain background nitrogen concentrations to tens of ??M N in relatively undisturbed ecosystems when nitrogen inputs from weathering bedrock are accompanied by sufficient organic carbon concentrations to promote microbial nitrogen transformations.

Journal of Geophysical Research F: Earth Surface↗

Plague and trace metals in natural systems

All pathogenic organisms are exposed to abiotic influences such as the microclimates and chemical constituents of their environments. Even those pathogens that exist primarily within their hosts or vectors can be influenced directly or indirectly. Yersinia pestis , the flea-borne bacterium causing plague, is influenced by climate and its survival in soil suggests a potentially strong influence of soil chemistry. We summarize a series of controlled studies conducted over four decades in Russia by Dr. Evgeny Rotshild and his colleagues that investigated correlations between trace metals in soils, plants, and insects, and the detection of plague in free-ranging small mammals. Trace metal concentrations in plots where plague was detected were up to 20-fold higher or lower compared to associated control plots, and these differences were >2-fold in 22 of 38 comparisons. The results were statistically supported in eight studies involving seven host species in three families and two orders of small mammals. Plague tended to be positively associated with manganese and cobalt, and the plague association was negative for copper, zinc, and molybdenum. In additional studies, these investigators detected similar connections between pasturellosis and concentrations of some chemical elements. A One Health narrative should recognize that the chemistry of soil and water may facilitate or impede epidemics in humans and epizootics in non-human animals.

International Journal of Environmental Research an↗

Evidence for intensification of the global water cycle: Review and synthesis

One of the more important questions in hydrology is: if the climate warms in the future, will there be an intensification of the water cycle and, if so, the nature of that intensification? There is considerable interest in this question because an intensification of the water cycle may lead to changes in water-resource availability, an increase in the frequency and intensity of tropical storms, floods, and droughts, and an amplification of warming through the water vapor feedback. Empirical evidence for ongoing intensification of the water cycle would provide additional support for the theoretical framework that links intensification with warming. This paper briefly reviews the current state of science regarding historical trends in hydrologic variables, including precipitation, runoff, tropospheric water vapor, soil moisture, glacier mass balance, evaporation, evapotranspiration, and growing season length. Data are often incomplete in spatial and temporal domains and regional analyses are variable and sometimes contradictory; however, the weight of evidence indicates an ongoing intensification of the water cycle. In contrast to these trends, the empirical evidence to date does not consistently support an increase in the frequency or intensity of tropical storms and floods.

Journal of Hydrology↗

GCIP water and energy budget synthesis (WEBS)

As part of the World Climate Research Program's (WCRPs) Global Energy and Water-Cycle Experiment (GEWEX) Continental-scale International Project (GCIP), a preliminary water and energy budget synthesis (WEBS) was developed for the period 1996-1999 fromthe "best available" observations and models. Besides this summary paper, a companion CD-ROM with more extensive discussion, figures, tables, and raw data is available to the interested researcher from the GEWEX project office, the GAPP project office, or the first author. An updated online version of the CD-ROM is also available at http://ecpc.ucsd.edu/gcip/webs.htm/. Observations cannot adequately characterize or "close" budgets since too many fundamental processes are missing. Models that properly represent the many complicated atmospheric and near-surface interactions are also required. This preliminary synthesis therefore included a representative global general circulation model, regional climate model, and a macroscale hydrologic model as well as a global reanalysis and a regional analysis. By the qualitative agreement among the models and available observations, it did appear that we now qualitatively understand water and energy budgets of the Mississippi River Basin. However, there is still much quantitative uncertainty. In that regard, there did appear to be a clear advantage to using a regional analysis over a global analysis or a regional simulation over a global simulation to describe the Mississippi River Basin water and energy budgets. There also appeared to be some advantage to using a macroscale hydrologic model for at least the surface water budgets. Copyright 2003 by the American Geophysical Union.

Journal of Geophysical Research D: Atmospheres↗

Assembly of the largest squamate reference genome to date: The western fence lizard, Sceloporus occidentalis

Spiny lizards (genus Sceloporus ) have long served as important systems for studies of behavior, thermal physiology, dietary ecology, vector biology, speciation, and biogeography. The western fence lizard, Sceloporus occidentalis , is found across most of the major biogeographical regions in the western United States and northern Baja California, Mexico, inhabiting a wide range of habitats, from grassland to chaparral to open woodlands. As small ectotherms, Sceloporus lizards are particularly vulnerable to climate change, and S. occidentalis has also become an important system for studying the impacts of land use change and urbanization on small vertebrates. Here, we report a new reference genome assembly for S. occidentalis , as part of the California Conservation Genomics Project (CCGP). Consistent with the reference genomics strategy of the CCGP, we used Pacific Biosciences HiFi long reads and Hi-C chromatin-proximity sequencing technology to produce a de novo assembled genome. The assembly comprises a total of 608 scaffolds spanning 2,856 Mb, has a contig N50 of 18.9 Mb, a scaffold N50 of 98.4 Mb, and BUSCO completeness score of 98.1% based on the tetrapod gene set. This reference genome will be valuable for understanding ecological and evolutionary dynamics in S. occidentalis , the species status of the California endemic island fence lizard ( S. becki ), and the spectacular radiation of Sceloporus lizards.

California↗

Body size and lean mass of brown bears across and within four diverse ecosystems

Variation in body size across populations of brown bears (Ursus arctos) is largely a function of the availability and quality of nutritional resources while plasticity within populations reflects utilized niche width with implications for population resiliency. We assessed skull size, body length, and lean mass of adult female and male brown bears in four Alaskan study areas that differed in climate, primary food resources, population density, and harvest regime. Full body-frame size, as evidenced by asymptotic skull size and body length, was achieved by 8 to 14 years of age across populations and sexes. Lean body mass of both sexes continued to increase throughout their life. Differences between populations existed for all morphological measures in both sexes, bears in ecosystems with abundant salmon were generally larger. Within all populations, broad variation was seen in body size measures of adults with females displaying roughly a 2-fold difference in lean mass and males showing a 3- to 4-fold difference. The high level of intraspecific variation seen across and within populations suggests the presence of multiple life-history strategies and niche variation relative to resource partitioning, risk tolerance or aversion, and competition. Further, this level of variation indicates broad potential to adapt to changes within a given ecosystem and across the species’ range.

Alaska↗

An empirically based simulation model to inform flow management for endangered species conservation

Increasing water demand, water development, and ongoing climate change have driven extensive changes to the hydrology, geomorphology and biology of arid-land rivers globally, driving an increasing need to understand how annual hydrologic conditions affect the distribution and abundance of imperiled desert fish populations. We analyzed the relationship between annual hydrologic conditions and the endangered Rio Grande silvery minnow ( Hybognathus amarus ) in the Middle Rio Grande, New Mexico, USA, using hurdle models to predict both presence and density as a function of integrated annual hydrologic metrics. Both presence and density were positively related to spring high flow magnitude and duration and negatively related to summer drying, as indicated by an integrated flow metric. Simulations suggest hydrologic conditions near the wettest observed in the data set would be required to meet recovery goals in a single year in all reaches. We demonstrate how the models developed herein can be used to examine alternative water management strategies, including strategies that may currently be socially and logistically infeasible to implement, to identify strategies minimizing trade-offs between conservation and other management goals.

New Mexico↗

Arctic transitions in the Land - Atmosphere System (ATLAS): Background, objectives, results, and future directions

This paper briefly reviews the background, objectives, and results of the Arctic Transitions in the Land-Atmosphere System (ATLAS) Project to date and provides thoughts on future directions. The key goal of the ATLAS Project is to improve understanding of controls over spatial and temporal variability of terrestrial processes in the Arctic that have potential consequences for the climate system, i.e., processes that affect the exchange of water and energy with the atmosphere, the exchange of radiatively active gases with the atmosphere, and the delivery of freshwater to the Arctic Ocean. Three important conclusions have emerged from research associated with the ATLAS Project. First, associated with the observation that the Alaskan Arctic has warmed significantly in the last 30 years, permafrost is warming, shrubs are expanding, and there has been a temporary release of carbon dioxide from tundra soils. Second, the winter is a more important period of biological activity than previously appreciated. Biotic processes, including shrub expansion and decomposition, affect snow structure and accumulation and affect the annual carbon budget of tundra ecosystems. Third, observed vegetation changes can have a significant positive feedback to regional warming. These vegetation effects are, however, less strong than those exerted by land-ocean heating contrasts and the topographic constraints on air mass movements. The papers of this special section provide additional insights related to these conclusions and to the overall goal of ATLAS.

Journal of Geophysical Research D: Atmospheres↗

Glimpses of East Antarctica: Aeromagnetic and satellite magnetic view from the central Transantarctic Mountains of East Antarctica

Aeromagnetic and satellite magnetic data provide glimpses of the crustal architecture within the Ross Sea sector of the enigmatic, ice-covered East Antarctic shield critical for understanding both global tectonic and climate history. In the central Transantarctic Mountains (CTAM), exposures of Precambrian basement, coupled with new high-resolution magnetic data, other recent aeromagnetic transects, and satellite magnetic and seismic tomography data, show that the shield in this region comprises an Archean craton modified both by Proterozoic magmatism and early Paleozoic orogenic basement reactivation. CTAM basement structures linked to the Ross Orogeny are imaged 50–100 km farther west than previously mapped, bounded by inboard upper crustal Proterozoic granites of the Nimrod igneous province. Magnetic contrasts between craton and rift margin sediments define the Neoproterozoic rift margin, likely reactivated during Ross orogenesis and Jurassic extension. Interpretation of satellite magnetic and aeromagnetic patterns suggests that the Neoproterozoic rift margin of East Antarctica is offset by transfer zones to form a stepwise series of salients tracing from the CTAM northward through the western margin of the Wilkes Subglacial Basin to the coast at Terre Adélie. Thinned Precambrian crust inferred to lie east of the rift margin cannot be imaged magnetically because of modification by Neoproterozoic and younger tectonic events.

Journal of Geophysical Research B: Solid Earth↗

Assessing the potential to mitigate climate-related expansion of largemouth bass populations using angler harvest

Climate-related changes in fish communities can present new challenges for fishery managers who must address declines in cool- and cold-water sportfish while dealing with increased abundance of warm-water sportfish. We used largemouth bass ( Micropterus salmoides ) in Wisconsin lakes as model populations to determine whether angler harvest provides a realistic method for reducing abundance of a popular warm-water sportfish that has become more prevalent and has prompted management concerns around the globe. Model results indicate largemouth bass will be resilient to increased fishing mortality. Furthermore, high rates of voluntary catch-and-release occurring in most largemouth bass fisheries likely preclude fishing mortality rates required to reduce bass abundance at meaningful levels (≥25% reductions). Increasing fishing mortality in these scenarios may require more “stimulus” than merely providing anglers with greater harvest opportunities via less stringent harvest regulations. Angler harvest could result in populations dominated by small fish, a scenario that may be undesirable to anglers, but could provide ecological benefits in certain situations.

Wisconain↗

Benthic foraminiferal community changes across the Miocene climatic optimum Identified by SHEBI analysis (SHE analysis for biozone identification), Calvert Cliffs, Maryland, USA

The Calvert Cliffs, MD, an iconic section of Middle Miocene strata, have been well studied both paleontologically and stratigraphically for over a century. However, few studies of the Calvert Cliffs have looked at the benthic foraminifera. This study uses SHEBI analysis (SHE analysis for biozone identification) of benthic foraminiferal assemblages to analyze community change in the Calvert and Choptank formations of the Calvert Cliffs deposited during the Miocene Climatic Optimum (MCO; 17–14.8 Ma) and the Middle Miocene Climate Transition (MMCT; 14.8–13.8 Ma). SHE analysis differs from traditional analytical methods by defining communities based on changes in diversity rather than the relative abundance of individual species. This study uses SHE analysis on a composite section of benthic foraminiferal assemblages from three vertical transects that span the MCO and MMCT. Two communities were identified from the studied strata. Community 1 was deposited during the MCO and includes incised valley fill (IVF), transgressive system tract (TST), and highstand system tract (HST) deposits. Community 2, deposited during the MMCT, is composed of samples from TST, HST, IVF, and another HST. The assemblages of community 1 are representative of an inner to middle shelf environment whereas those of community 2 are representative of an inner shelf environment. The two foraminiferal communities differentiated by SHE analysis indicate a high relative sea level in the Salisbury Embayment during the warm MCO followed by a decrease in sea level during the subsequent cooler MMCT.

Maryland↗

Ten best practices for effective phenological research

The number and diversity of phenological studies has increased rapidly in recent years. Innovative experiments, field studies, citizen science projects, and analyses of newly available historical data are contributing insights that advance our understanding of ecological and evolutionary responses to the environment, particularly climate change. However, many phenological data sets have peculiarities that are not immediately obvious and can lead to mistakes in analyses and interpretation of results. This paper aims to help researchers, especially those new to the field of phenology, understand challenges and practices that are crucial for effective studies. For example, researchers may fail to account for sampling biases in phenological data, struggle to choose or design a volunteer data collection strategy that adequately fits their project’s needs, or combine data sets in inappropriate ways. We describe ten best practices for designing studies of plant and animal phenology, evaluating data quality, and analyzing data. Practices include accounting for common biases in data, using effective citizen or community science methods, and employing appropriate data when investigating phenological mismatches. We present these best practices to help researchers entering the field take full advantage of the wealth of available data and approaches to advance our understanding of phenology and its implications for ecology.

International Journal of Biometeorology↗

Mechanisms of Devils Lake’s responses to recent climatic wetting: Insights from a physically based hydrologic model

Study region Devils Lake Basin of the Northern Great Plains (NGP) region, North Dakota, USA Study focus Understanding the mechanism of Devils Lake’s responses and basin-wide hydrologic change under a wet-climatic regime using a process-based and cold region hydrologic model. New hydrologic insights Model results illustrate that three distinct hydroclimatic periods occurred during the study: Water Years 2002–05, 2006–11, and 2012–18. Following a brief time of contraction and growth, the latter two periods provide a complete picture of a wetting to drying cycle during an overall wetting regime. From 2006–2011, Devils Lake (DL) grew primarily due to lateral inflow, driven by strong precipitation and high frozen soil content leading up to the 2011 floods. In addition, during wet years, the snowmelt streamflow from the eastern and central parts of the DL Basin contributes significantly to lake growth compared to the western part. By contrast, from 2012 to 18, DL entered a contraction period, dominated by evaporation losses and anthropogenic flood control operations. Contributors to upstream drying included low precipitation, minimal snowpack accumulation, slightly lower frozen soil ratios, and minimal snowmelt runoff.

North Dakota↗

El Niño increases high‐tide flooding in tidal wetlands along the U.S. Pacific coast.

Periodic oscillations between El Niño and La Niña conditions in the Pacific Basin affect oceanographic and meteorological phenomena globally, with impacts on the abundance and distribution of marine species. However, El Niño effects on estuarine hydrology and tidal wetland processes have seldom been examined rigorously. We used detailed wetland elevation and local inundation data from 10 tidal wetlands located along the Pacific coast of the United States to assess changes in flooding during the 2015–2016 El Niño and to determine decadal‐scale relationships between estuarine sea‐level anomalies and Pacific Basin climate indices for this region. During the 2015–2016 El Niño all sites experienced significant increases in high‐tide water levels exceeding those predicted by astronomical tides, and increased flooding frequency during at least one of the El Niño subperiods relative to pre‐El Niño conditions. The magnitude of positive sea‐level anomalies varied by site (4–15 cm), with local hot spots of high water in southern Oregon, northern California, and Pt. Mugu lagoon in the Southern California Bight. Furthermore, over the last three decades of historic tide records, there were positive relationships between high‐tide sea‐level anomalies and equatorial Pacific Basin sea surface temperature anomalies across the region, and negative relationships with the Northern Oscillation Index. Increases of 1 °C in equatorial sea surface temperature were associated with 3–5 cm of increased high‐tide flooding at the sites. Elevated estuarine flooding associated with future El Niños could impact important tidal wetland processes and could be an additive stressor for wetlands facing accelerating sea‐level rise.

California, Oregon, Washington↗