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The National Research Program in the hydrological sciences

The National Research Program (NRP) in the hydrological sciences encompasses a broad spectrum of scientific investigations and focuses on long-term integrated studies related to water resource and environmental problems. The NRP provides an infrastructure within which the USGS can develop new information, theories, and techniques to understand, anticipate, and solve water-resource problems facing managers of Federal lands and the Nation.

Fact Sheet↗

A database of biodiversity and habitat quantification tools used in market-based conservation

Market-based conservation uses economic incentives to leverage market forces in ways that encourage and improve efficiency in the restoration, enhancement, and preservation of species and habitats. Biodiversity and habitat quantification tools are vital to the operation of this conservation strategy, as they are used to measure the quality and functionality of areas of land that have undergone or are proposed for preservation, improvement, or development activities (for example, construction of energy or transportation infrastructure and residential development). The U.S. Geological Survey (USGS) Science and Decisions Center in partnership with the U.S. Department of Agriculture Office of Environmental Markets have created a database of the quantification tools available for use in biodiversity and habitat markets in the contiguous United States. This database provides landowners, regulatory agencies, tool developers, and the general public with a central location from which to search for and identify the tools applicable to specific species, habitats, or locations of interest, such as those shown in figures 1 and 2. The database contains summary information about the intended application and features of each tool and will be updated as the need to add new tools warrants.

Fact Sheet↗

Native Prairie Adaptive Management: a multi region adaptive approach to invasive plant management on Fish and Wildlife Service owned native prairies

Much of the native prairie managed by the U.S. Fish and Wildlife Service (FWS) in the Prairie Pothole Region (PPR) of the northern Great Plains is extensively invaded by the introduced cool-season grasses, smooth brome ( Bromus inermis ) and Kentucky bluegrass ( Poa pratensis ). Management to suppress these invasive plants has had poor to inconsistent success. The central challenge to managers is selecting appropriate management actions in the face of biological and environmental uncertainties. In partnership with the FWS, the U.S. Geological Survey (USGS) developed an adaptive decision support framework to assist managers in selecting management actions under uncertainty and maximizing learning from management outcomes. This joint partnership is known as the Native Prairie Adaptive Management (NPAM) initiative. The NPAM decision framework is built around practical constraints faced by FWS refuge managers and includes identification of the management objective and strategies, analysis of uncertainty and construction of competing decision models, monitoring, and mechanisms for model feedback and decision selection. Nineteen FWS field stations, spanning four states of the PPR, have participated in the initiative. These FWS cooperators share a common management objective, available management strategies, and biological uncertainties. Though the scope is broad, the initiative interfaces with individual land managers who provide site-specific information and receive updated decision guidance that incorporates understanding gained from the collective experience of all cooperators. We describe the technical components of this approach, how the components integrate and inform each other, how data feedback from individual cooperators serves to reduce uncertainty across the whole region, and how a successful adaptive management project is coordinated and maintained on a large scale. During an initial scoping workshop, FWS cooperators developed a consensus management objective: increase the composition of native grasses and forbs on native sod while minimizing cost. Cooperators agreed that decision guidance should be provided annually and should account for local, real-time vegetation conditions observed on the ground. Over the course of development, two prototypes of the decision framework were considered. The final framework recognized four alternative actions that managers could take in any given year: (1) Graze—targeted use of grazing ungulates to achieve defoliation, (2) Burn—application of prescribed fire as the single form of defoliation, (3) Burn/Graze—a combination treatment, and (4) Rest—no action. The study area included northern mixed-grass and tallgrass prairie. Native vegetation in mixed–grass prairie has a strong cool-season component and thus the dominant native species have a phenology similar to that of smooth brome and Kentucky bluegrass, making management of those species challenging. In contrast, tallgrass prairie has a strong warm-season native component, leading to an existence of cool-season windows, periods of time in the fall and spring when cool‐season invasive grass species are actively growing and vulnerable to damage via select management actions, but warm‐season grass species are not active and are thus less susceptible to damage via the same actions. This dichotomy between prairie types necessitated the development of separate but parallel decision support systems for mixed-grass and tallgrass biomes. Management units are parcels of native prairie that receive a single management treatment at any one time over their entire extent. At any particular time, the vegetation state of each management unit is characterized by the amount of cover of native grasses and forbs and the type of invasive grass that is dominant. In addition, each unit has a defoliation state which reflects the number of years since the last defoliation event and an index to how intensively the unit was managed during the previous 7 years. State-transition models are used to predict the state of a management unit in year t+1 from its state in year t and a prescribed management action that was applied between the two monitoring events. Alternative models are built around key uncertainties that make choice of a management action difficult. Three uncertainties revolve around whether the effect of management actions depends on (1) type of dominant invader, (2) past defoliation history, and (3) level of invasion. Two additional uncertainties are considered when choosing a management action for tallgrass units: (4) the effectiveness of grazing within the cool-season window as a surrogate for burning when smooth brome is the dominant invader, and (5) the differential effect of active management outside the window as compared to rest. Because data on the probability of transitioning from one state to another under the various models were lacking, expert opinion and elicitation were used to parameterize the models. In addition, cooperators participated in elicitation exercises to extract their beliefs regarding the value of having native prairie compared to the cost of achieving it. Quantifying the subjective expression of utility in this way allowed for mathematical representation of the management objective into an objective function. By maximizing the objective function, cumulative utility is maximized, leading to the identification of a sequence of decisions that will achieve the management objective. The NPAM system adopted a vegetation monitoring protocol that was rapid, inexpensive, and familiar to many of the cooperators. The monitoring protocol served three purposes: (1) determining current vegetation and defoliation states of each unit, (2) evaluating progress toward the management objective, and (3) assessing predictive performance of the alternative models. The management year runs from September 1 to August 31. Management can be applied anytime during that period and monitoring takes places from late June to mid-August. Cooperators enter vegetation data and management information into a centralized database by August 25 of each year. Given the current state of the system (vegetation and defoliation states) and the current understanding of the system (or the belief state), identifying the current best management decision is a matter of looking up the combination (that is, system state and belief state) in the appropriate (mixed-grass or tallgrass) optimal decision table. Given complete uncertainty at the outset of decision-making, initial assignment of equal belief weights to each model was believed reasonable. The decisions in the optimal decision table that correspond to the current belief state constitute the current optimal decision policy. By August 31 of each year, individual cooperators are provided with a recommended management action for each of their management units for the upcoming management year. Upon receiving the management recommendations for their units, managers consider the recommendation, along with other relevant information, and at some point during the year one of the management alternatives is carried out. This iterative cycle of making and implementing a management decision, predicting the response, monitoring the outcome, comparing predicted and observed outcomes, updating model weights, and recommending a management action for the next cycle is expected to result in an accumulation of weight on a representative model of system dynamics, thereby increasing understanding needed to effectively manage native prairies. The NPAM system is now entering its second full year of complete operation, and represents one of only a few fully implemented applications of adaptive management within the U.S. Fish and Wildlife Service. NPAM is truly unique in that it originated from the ground up as a result of the leadership and steadfastness of several refuge biologists and managers confronted with a common problem. These biologists recognized that working together across a large landscape presented perhaps the best opportunity for halting and reversing the invasion of native grasslands by non-native cool-season grasses. Importantly, the NPAM system encapsulates the collective thinking and experience of tens if not hundreds of individuals who have battled this vexing problem for much of their careers. The NPAM initiative is rooted in principles of adaptive management, thereby affording the opportunity for grassland managers to pursue management objectives while acquiring information to reduce uncertainty and improve future management. The project introduced a number of technical innovations that will serve as templates for conservation efforts throughout and beyond the U.S. Fish and Wildlife Service. First, NPAM is an on-the-ground implementation of active adaptive management—possibly the first of its kind in conservation management—in which recommended management actions result from a prospective analysis of future learning (Williams, 1996). Second, by the use of dynamic optimization, NPAM demonstrates how decisions can be made that take into account possible future transitions of the system. Third, NPAM demonstrates how models of partial controllability are an effective means of accommodating unpredictable circumstances that cause a manager to follow a different course than was intended. Finally, the database developed for NPAM is an unparalleled system that enables the rapid integration of data from the field for the generation of ‘just-in-time’ management recommendations. In all, NPAM provides an example of how a science-management partnership can be forged to achieve large-scale conservation objectives.

Minnesota;Montana;North Dakota;South Dakota↗

Base and precious metal occurrences along the San Andreas Fault, Point Delgada, California

Previously unrecognized veins containing lead, zinc, and copper sulfide minerals at Point Delgada, Calif., are associated with late Mesozoic(?) and Tertiary volcanic and sedimentary rocks of the Franciscan assemblage. Sulfide minerals include pyrite, sphalerite, galena, and minor chalcopyrite, and galena-rich samples contain substantial amounts of silver. These minerals occur in a quartz-carbonate gangue along northeast-trending faults and fractures that exhibit (left?) lateral and vertical slip. The sense of fault movement and the northeasterly strike are consistent with predicted conjugate fault sets of the present San Andreas fault system. The sulfide mineralization is younger than the Franciscan rocks of Point Delgada and King Range, and it may have accompanied or postdated the inception of San Andreas faulting. Mineralization largely preceded uplift, the formation of a marine terrace, and the emplacement of landslide-related debris-flow breccias that overlie the mineralized rocks and truncate the sulfide veins. These field relations indicate that the sulfide mineralization and inception of San Andreas faulting were clearly more recent than the early Miocene and that the mineralization could be younger than about 1.2 m.y. The sulfide veins at Point Delgada may be of economic significance. However, prior to any exploitation of the occurrence, economic and environmental conflicts of interest involving private land ownership, the Shelter Cove home development, and proximity of the coast must be resolved.

California↗

Environmental geologic studies on the southeastern United States Atlantic Outer Continental Shelf, 1977-1978

This report is a summary of the second year of marine environmental research activities by the U.S. Geological Survey (USGS) on the southeaster U.S. Atlantic Continental Margin, in accordance with with Memorandum of Understanding (MOU) AA551-MU8-13 between the USGS and the Bureau of Land Management (BLM). The report covers studies whose fieldwork was conducted during the period from 1 October 1977 to 30 September 1978. The results of the first year of study are reported in Popenoe (1978a and b) and as U.S. Department of Commerce NTIS report PB 300-820. The purpose of these investigations is to provide basic geologic and oceanographic data to the BLM Outer Continental Shelf (OCS) Marine Environmental Studies Program in support of management decisions which relate to possible development of oil and gas resources of the continental shelf. The objectives of the USGS-BLM geologic research program for fiscal year 1978 (FY-78) were 1) to determine the sedimentation rates and processes on the upper slope and inner Blake Plateau; 2) to determine the distribution, areal extent, and vertical characteristics of geological features supportive of biological communities; 3) to monitor the transport of bottom sediment across the OCS, evaluate its possible effect on pollutant transfer along the seabed and the potential of sediment as a pollutant sink, determine the implications of erosion/deposition on pipeline emplacement, and aid the interpretation of chemical, biological, and physical data; 4) to determine the concentration levels of chosen trace metals and silica in three chemically defined fractions of the suspended particulate matter (seston); 5) to study the shelf edge and slope near areas of oil and gas interest, and the northern portion of the Blake Plateau for evidence of slope instability and other geologic hazards, and 6) to determine the depth and rate of sediment mixing caused by large storms and/or by benthic organisms and where possible to estimate the rate of active sediment accumulation.

Atlantic Outer Continental Shelf↗

Water-Quality Characteristics for Sites in the Tongue, Powder, Cheyenne, and Belle Fourche River Drainage Basins, Wyoming and Montana, Water Years 2001-05, with Temporal Patterns of Selected Long-Term Water-Quality Data

Water-quality sampling was conducted regularly at stream sites within or near the Powder River structural basin in northeastern Wyoming and southeastern Montana during water years 2001-05 (October 1, 2000, to September 30, 2005) to characterize water quality in an area of coalbed natural gas development. The U.S. Geological Survey, in cooperation with the Wyoming Department of Environmental Quality, characterized the water quality at 22 sampling sites in the Tongue, Powder, Cheyenne, and Belle Fourche River drainage basins. Data for general hydrology, field measurements, major-ion chemistry, and selected trace elements were summarized, and specific conductance and sodium-adsorption ratios were evaluated for relations with streamflow and seasonal variability. Trend analysis for water years 1991-2005 was conducted for selected sites and constituents to assess change through time. Average annual runoff was highly variable among the stream sites. Generally, streams that have headwaters in the Bighorn Mountains had more runoff as a result of higher average annual precipitation than streams that have headwaters in the plains. The Powder River at Moorhead, Mont., had the largest average annual runoff (319,000 acre-feet) of all the sites; however, streams in the Tongue River drainage basin had the highest runoff per unit area of the four major drainage basins. Annual runoff in all major drainage basins was less than average during 2001-05 because of drought conditions. Consequently, water-quality samples collected during the study period may not represent long-term water-quality con-ditions for all sites. Water-quality characteristics were highly variable generally because of streamflow variability, geologic controls, and potential land-use effects. The range of median specific-conductance values among sites was smallest in the Tongue River drainage basin. Median values in that basin ranged from 643 microsiemens per centimeter at 25 degrees Celsius (?S/cm at 25?C) on the Tongue River to 1,460 ?S/cm at 25?C on Prairie Dog Creek. The Tongue River drainage basin has the largest percentage of area underlain by Mesozoic-age and older rocks and by more resistant rocks. In addition, the higher annual precipitation and a steeper gradient in this basin compared to basins in the plains produce relatively fast stream velocities, which result in a short contact time between stream waters and basin materials. The Powder River drainage basin, which has the largest drainage area and most diverse site conditions, had the largest range of median specific-conductance values among the four major drainage basins. Median values in that basin ranged from 680 ?S/cm at 25?C on Clear Creek to 5,950 ?S/cm at 25?C on Salt Creek. Median specific-conductance values among sites in the Cheyenne River drainage basin ranged from 1,850 ?S/cm at 25?C on Black Thunder Creek to 4,680 ?S/cm at 25?C on the Cheyenne River. The entire Cheyenne River drainage basin is in the plains, which have low precipitation, soluble geologic materials, and relatively low gradients that produce slow stream velocities and long contact times. Median specific-conductance values among sites in the Belle Fourche River drainage basin ranged from 1,740 ?S/cm at 25?C on Caballo Creek to 2,800 ?S/cm at 25?C on Donkey Creek. Water in the study area ranged from a magnesium-calcium-bicarbonate type for some sites in the Tongue River drainage basin to a sodium-sulfate type at many sites in the Powder, Cheyenne, and Belle Fourche River drainage basins. Little Goose Creek, Goose Creek, and the Tongue River in the Tongue River drainage basin, and Clear Creek in the Powder River drainage basin, which have headwaters in the Bighorn Mountains, consistently had the smallest median dissolved-sodium concentrations, sodium-adsorption ratios, dissolved-sulfate concentrations, and dissolved-solids concentrations. Salt Creek, Wild Horse Creek, Little Powder River, and the Cheyenne River, which have headwat

Scientific Investigations Report↗

Ground-water quality in Bannock, Bear Lake, Caribou, and part of Power counties, southeastern Idaho

This report provides information about the current quality of ground waters in southeastern Idaho and discusses the natural and manmade environmental controls on that quality. This information will be useful in planning and monitoring the development and use of the ground-water resources of southeastern Idaho. The southeastern corner of Idaho, as described in this report, encompasses an area of about 4,000 mil in Bannock, Bear Lake, Caribou, and part of Power Counties. The popu- lation of the area in 1975, based on best estimates by the Idaho Division of Budget, Policy Planning, and Coordination (1976) was 75,200. About 80 percent of the population is in and near the city of Pocatello, which is the second largest population center in the State. Pocatello's economy depends largely on manufacturing and industrial processing, which includes chemicalfertilizer plants. The econ- omy in the rural areas depends largely on agriculture--both dry and irrigated farming are practiced. Mining is important and expected to dominate the economy in the eastcentral part of the area in the future. Natural resources include phosphate ore, which makes up about 35 percent of the U.S. reserves (U.S. Department of Interior and U.S. Department of Agriculture, 1977); ground water, which mostly underlies the several intermontane valleys that dissect the area; and hot springs, which indicate that geothermal energy sources may underlie part of the area. Also, current (1978) speculation is that petroleum reserves may be present in the vicinity of Bear Lake. Development of more sprink- ler-irrigated lands, increases in population, and growth of phosphate mining are expected to place stress on the ground-water resources, both in quality and quantity. The purpose of this report is to present the results of a study whose primary objectives were (1) to provide current waterquality data representative of the water in several different aquifers (water- bearing formations) in the study area, and (2) to relate these data to natural and manmade environmental controls. The wells sampled during this study establish a quasi-network, which could be resampled in the future to document and analyze changes (if any) in ground-water quality. Based on this information, planners and water managers could better understand the causeand-effect relations controlling water quality and could better manage land and water-resource development. The report is designed for ease of reading and presentation. It uses maps, tables, and abbreviated text to describe geology, hydrology, and ground-water quality and how they are interrelated. Some practical ways for improving water quality are discussed for the benefit of individual water users. The field data collected in making the study are contained in the Data Section of this report. The authors gratefully acknowledge the many individual well owners, municipal officials, and private industries that provided well information and allowed access to their properties and collection of water samples. Without their help, this work could not have been done. Water samples were collected at 103 well sites. Waterlevel measurements were made at 98 of these sites during July, August, and September of 1976. This study was made by the U.S. Geological Survey in cooperation with the Idaho Department of Water Resources. A similar study is being made (1978) in north Idaho. Other studies are planned, specifically to obtain ground-water-quality data in areas where land and water-resource development is expected or accelerating.

Idaho↗

U.S. Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Charleston, South Carolina, March 8-12, 1999: Volume 1 (Part A)

This report contains papers presented at the seventh Technical Meeting of the U.S. Geological Survey (USGS), Toxic Substances Hydrology (Toxics) Program. The meeting was held March 8-12, 1999, in Charleston, South Carolina. Toxics Program Technical Meetings are held periodically to provide a forum for presentation and discussion of results of recent research activities. The objectives of these meetings are to: Present recent research results to essential stakeholders, Encourage synthesis and integrated interpretations among scientists with different expertise who are working on a contamination issue, and Promote exchange of ideas among scientists working on different projects and issues within the Toxics Program. The Proceedings is published in three volumes. Volume 1 contains papers that report on results of research on contamination from hard-rock mining. Results include research on contamination from hard rock mining in arid southwest alluvial basins, research on hard rock mining in mountainous terrain, and progress from the USGS Abandoned Mine Lands Initiative. This Initiative is designed to develop a watershed-based approach to characterize and remediate contamination from abandoned mine lands and transfer technologies to Federal land management agencies and stakeholders. Volume 2 contains papers on contamination of hydrologic systems and related ecosystems. The papers discuss research on the response of estuarine ecosystems to contamination from human activities. They include research on San Francisco Bay; mercury contamination of aquatic ecosystems; and investigation of the occurrence, distribution, and fate of agricultural chemicals in the Mississippi River Basin. This volume also contains results on development and reconnaissance testing of new methods to detect emerging contaminants in environmental samples. Volume 3 contains papers on subsurface contamination from point sources. The papers discuss research on: hydrocarbons and fuel oxygenates at gasoline release sites; ground-water contamination by crude oil; complex contaminant mixtures from treated wastewater discharges; waste disposal and subsurface transport of contaminants in arid environments; ground water and surface water affected by municipal landfill leachate; natural attenuation of chlorinated solvents; and characterizing flow and transport in fractured rock aquifers. In all, the more than 175 papers contained in this proceedings reflect the contributions of more than 350 scientists who are co-authors. These scientists are from across the USGS, as well as from universities, other Federal and State agencies, and industry.

Water-Resources Investigations Report↗

U.S. Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Charleston, South Carolina, March 8-12, 1999: Volume 2 (Part B)

This report contains papers presented at the seventh Technical Meeting of the U.S. Geological Survey (USGS), Toxic Substances Hydrology (Toxics) Program. The meeting was held March 8-12, 1999, in Charleston, South Carolina. Toxics Program Technical Meetings are held periodically to provide a forum for presentation and discussion of results of recent research activities. The objectives of these meetings are to: Present recent research results to essential stakeholders, Encourage synthesis and integrated interpretations among scientists with different expertise who are working on a contamination issue, and Promote exchange of ideas among scientists working on different projects and issues within the Toxics Program. The Proceedings is published in three volumes. Volume 1 contains papers that report on results of research on contamination from hard-rock mining. Results include research on contamination from hard rock mining in arid southwest alluvial basins, research on hard rock mining in mountainous terrain, and progress from the USGS Abandoned Mine Lands Initiative. This Initiative is designed to develop a watershed-based approach to characterize and remediate contamination from abandoned mine lands and transfer technologies to Federal land management agencies and stakeholders. Volume 2 contains papers on contamination of hydrologic systems and related ecosystems. The papers discuss research on the response of estuarine ecosystems to contamination from human activities. They include research on San Francisco Bay; mercury contamination of aquatic ecosystems; and investigation of the occurrence, distribution, and fate of agricultural chemicals in the Mississippi River Basin. This volume also contains results on development and reconnaissance testing of new methods to detect emerging contaminants in environmental samples. Volume 3 contains papers on subsurface contamination from point sources. The papers discuss research on: hydrocarbons and fuel oxygenates at gasoline release sites; ground-water contamination by crude oil; complex contaminant mixtures from treated wastewater discharges; waste disposal and subsurface transport of contaminants in arid environments; ground water and surface water affected by municipal landfill leachate; natural attenuation of chlorinated solvents; and characterizing flow and transport in fractured rock aquifers. In all, the more than 175 papers contained in this proceedings reflect the contributions of more than 350 scientists who are co-authors. These scientists are from across the USGS, as well as from universities, other Federal and State agencies, and industry.

Water-Resources Investigations Report↗

U.S. Geological Survey Toxic Substances Hydrology Program: Proceedings of the technical meeting, Charleston, South Carolina, March 8-12, 1999: Volume 3 (Part C)

This report contains papers presented at the seventh Technical Meeting of the U.S. Geological Survey (USGS), Toxic Substances Hydrology (Toxics) Program. The meeting was held March 8-12, 1999, in Charleston, South Carolina. Toxics Program Technical Meetings are held periodically to provide a forum for presentation and discussion of results of recent research activities. The objectives of these meetings are to: Present recent research results to essential stakeholders, Encourage synthesis and integrated interpretations among scientists with different expertise who are working on a contamination issue, and Promote exchange of ideas among scientists working on different projects and issues within the Toxics Program. The Proceedings is published in three volumes. Volume 1 contains papers that report on results of research on contamination from hard-rock mining. Results include research on contamination from hard rock mining in arid southwest alluvial basins, research on hard rock mining in mountainous terrain, and progress from the USGS Abandoned Mine Lands Initiative. This Initiative is designed to develop a watershed-based approach to characterize and remediate contamination from abandoned mine lands and transfer technologies to Federal land management agencies and stakeholders. Volume 2 contains papers on contamination of hydrologic systems and related ecosystems. The papers discuss research on the response of estuarine ecosystems to contamination from human activities. They include research on San Francisco Bay; mercury contamination of aquatic ecosystems; and investigation of the occurrence, distribution, and fate of agricultural chemicals in the Mississippi River Basin. This volume also contains results on development and reconnaissance testing of new methods to detect emerging contaminants in environmental samples. Volume 3 contains papers on subsurface contamination from point sources. The papers discuss research on: hydrocarbons and fuel oxygenates at gasoline release sites; ground-water contamination by crude oil; complex contaminant mixtures from treated wastewater discharges; waste disposal and subsurface transport of contaminants in arid environments; ground water and surface water affected by municipal landfill leachate; natural attenuation of chlorinated solvents; and characterizing flow and transport in fractured rock aquifers. In all, the more than 175 papers contained in this proceedings reflect the contributions of more than 350 scientists who are co-authors. These scientists are from across the USGS, as well as from universities, other Federal and State agencies, and industry.

Water-Resources Investigations Report↗

Broadening the focus of bat conservation and research in the USA for the 21st century

Appropriately, bat conservation in the USA during the 20th century focused on species that tend to aggregate in large numbers and locations (e.g. maternity roosts, hibernacula) where populations are most vulnerable. Extensive research into habitat needs (primarily for roosting) of reproductive females during the previous 2 decades has produced a wealth of information useful for developing conservation strategies for this group in their summer roost areas. However, the ecological needs of males, non-reproductive females, and juveniles have received far less attention, as have the ecological needs of all bats outside the pup-rearing season. Hence, it is unlikely that a single paradigm could comprehensively address conservation needs of all demographic groups within a species because they may have different seasonal distributions, reproductive strategies, and thermoregulatory needs. Herein, we recommend research into a wider spectrum of demographic groups and seasons to form a more holistic vision of the conservation needs of bats. We urge greater attention to understanding thermo-energetic and reproductive underpinnings of observed patterns of seasonal distribution and habitat selection by bats in the USA. Such understanding is instrumental for development of scientifically sound conservation strategies to confront emerging threats to conservation of bats in the 21st century: climate change, disease, habitat degradation, and environmental contaminants. We discuss interconnections among these emerging threats and the fundamental need to incorporate understanding of thermo-energetic strategies of bats in development of conservation strategies or legislation to mitigate potential impacts on bat populations of the USA.

Endangered Species Research↗

Evaluating the potential for efficient, UAS-based reach-scale mapping of river channel bathymetry from multispectral images

Introduction: Information on spatial patterns of water depth in river channels is valuable for numerous applications, but such data can be difficult to obtain via traditional field methods. Ongoing developments in remote sensing technology have enabled various image-based approaches for mapping river bathymetry; this study evaluated the potential to retrieve depth from multispectral images acquired by an uncrewed aircraft system (UAS). Methods: More specifically, we produced depth maps for a 4 km reach of a clear-flowing, relatively shallow river using an established spectrally based algorithm, Optimal Band Ratio Analysis. To assess accuracy, we compared image-derived estimates to direct measurements of water depth. The field data were collected by wading and from a boat equipped with an echo sounder and used to survey cross sections and a longitudinal profile. We partitioned our study area along the Sacramento River, California, USA, into three distinct sub-reaches and acquired a separate image for each one. In addition to the typical, self-contained, per-image depth retrieval workflow, we also explored the possibility of exporting a relationship between depth and reflectance calibrated using data from one site to the other two sub-reaches. Moreover, we evaluated whether sampling configurations progressively more sparse than our full field survey could still provide sufficient calibration data for developing robust depth retrieval models. Results: Our results indicate that under favorable environmental conditions like those observed on the Sacramento River during low flow, accurate, precise depth maps can be derived from images acquired by UAS, not only within a sub-reach but also across multiple, adjacent sub-reaches of the same river. Discussion: Moreover, our findings imply that the level of effort invested in obtaining field data for calibration could be significantly reduced. In aggregate, this investigation suggests that UAS-based remote sensing could facilitate highly efficient, cost-effective, operational mapping of river bathymetry at the reach scale in clear-flowing streams.

California↗

Gene expression profiles in two razor clam populations: Discerning drivers of population status

With rapidly changing marine ecosystems, shifts in abundance and distribution are being documented for a variety of intertidal species. We examined two adjacent populations of Pacific razor clams ( Siliqua patula ) in lower Cook Inlet, Alaska. One population (east) supported a sport and personal use fishery, but this has been closed since 2015 due to declines in abundance, and the second population (west) continues to support commercial and sport fisheries. We used gene expression to investigate potential causes of the east side decline, comparing razor clam physiological responses between east and west Cook Inlet. The target gene profile used was developed for razor clam populations in Alaska based on physiological responses to environmental stressors. In this study, we identified no differences of gene expression between east and west populations, leading to two potential conclusions: (1) differences in factors capable of influencing physiology exist between the east and west and are sufficient to influence razor clam populations but are not detected by the genes in our panel, or (2) physiological processes do not account for the differences in abundance, and other factors such as predation or changes in habitat may be impacting the east Cook Inlet population.

Alaska↗

An annual plant growth proxy in the Mojave Desert using MODIS-EVI data

In the arid Mojave Desert, the phenological response of vegetation is largely dependent upon the timing and amount of rainfall, and maps of annual plant cover at any one point in time can vary widely. Our study developed relative annual plant growth models as proxies for annual plant cover using metrics that captured phenological variability in Moderate-Resolution Imaging Spectroradiometer (MODIS) Enhanced Vegetation Index (EVI) satellite images. We used landscape phenologies revealed in MODIS data together with ecological knowledge of annual plant seasonality to develop a suite of metrics to describe annual growth on a yearly basis. Each of these metrics was applied to temporally-composited MODIS-EVI images to develop a relative model of annual growth. Each model was evaluated by testing how well it predicted field estimates of annual cover collected during 2003 and 2005 at the Mojave National Preserve. The best performing metric was the spring difference metric, which compared the average of three spring MODIS-EVI composites of a given year to that of 2002, a year of record drought. The spring difference metric showed correlations with annual plant cover of R2 = 0.61 for 2005 and R 2 = 0.47 for 2003. Although the correlation is moderate, we consider it supportive given the characteristics of the field data, which were collected for a different study in a localized area and are not ideal for calibration to MODIS pixels. A proxy for annual growth potential was developed from the spring difference metric of 2005 for use as an environmental data layer in desert tortoise habitat modeling. The application of the spring difference metric to other imagery years presents potential for other applications such as fuels, invasive species, and dust-emission monitoring in the Mojave Desert.

Sensors↗

Applications of isotopes to tracing sources of solutes and water in shallow systems

New awareness of the potential danger to water supplies posed by the use of agricultural chemicals has focused attention on the nature of groundwater recharge and the mobility of various solutes, especially nitrate and pesticides, in shallow systems. A better understanding of hydrologic flowpaths and solute sources is required to determine the potential impact of sources of contamination on water supplies, to develop management practices for preserving water quality, and to develop remediation plans for sites that are already contaminated. In many cases, environmental isotopes can be employed as 'surgical tools' for answering very specific questions about water and solute sources. Isotopic data can often provide more accurate information about the system than hydrologic measurements or complicated hydrologic models. This note focuses on practical and cost-effective examples of how naturally-occurring isotopes can be used to track water and solutes as they move through shallow systems.

Conference Paper↗

Adaptive harvest management: Adjustments for SEIS 2013

This report provides a summary of revised methods and assessment results based on updated adaptive harvest management (AHM) protocols developed in response to the preferred alternative specified in the Final Supplemental Environmental Impact Statement on the Issuance of Annual Regulations Permitting the Hunting of Migratory Birds (SEIS; U.S. Department of the Interior 2013). We describe necessary changes to optimization procedures and decision processes for the implementation of AHM for midcontinent, eastern and western mallards (Anas platyrhynchos), northern pintails (Anas acuta), and scaup (Aythya affinis, A. marila) decision frameworks. We present this final report for communication purposes, and acknowledge that any use of trade, firm, or product names is for descriptive purposes only and does not imply endorsement by the U.S. Government.

U.S. Fish and Wildlife Service Report↗

Updates to the regional groundwater-flow model of the New Jersey Coastal Plain, 1980–2013

A 21-layer three-dimensional transient groundwater-flow model of the New Jersey Coastal Plain was developed and calibrated by the U.S. Geological Survey (USGS) in cooperation with the New Jersey Department of Environmental Protection to simulate groundwater-flow conditions during 1980–2013, incorporating average annual groundwater withdrawals and average annual groundwater recharge. This model is the third version of the New Jersey Coastal Plain regional groundwater-flow model that was initially developed as part of the USGS Regional Aquifer System Analysis (RASA) program. The model simulates groundwater flow in 11 aquifers and 10 intervening confining units of the New Jersey Coastal Plain to provide a regional overview of groundwater conditions. Averaged groundwater withdrawal data for 1980 to 2013 were used in the model. The 11 aquifers in New Jersey are, from shallowest to deepest, the Holly Beach water-bearing zone and the confined Cohansey aquifer in Cape May County; the Rio Grande water-bearing zone; the Atlantic City 800-foot sand; the Piney Point, Vincentown, and Wenonah-Mount Laurel aquifers; the Englishtown aquifer system; and the upper, middle, and lower aquifers of the Potomac-Raritan-Magothy (PRM) aquifer system. The model was developed with the MODFLOW–2005 numerical code and the UCODE parameter estimation technique and calibrated using water-level and base-flow observations. A total of 3,453 water-level observations from 392 wells in New Jersey and 48 wells in Delaware from 1983 to 2013 were used in model calibration, which includes historical water-level trends for 29 wells in New Jersey during 1980–2013 presented in time-series hydrographs. In addition, derived observations also were included by calculating the vertical gradient at 33 pairs of nested observation wells in New Jersey, for a total of 210 observations. Changes in water levels over time were calculated for 134 wells in New Jersey and four wells in Delaware where water levels had varied substantially (approximately 10 ft) over the 30-year span of synoptic water-level measurements, for a total of 767 observations. A total of 1,485 base-flow observations in 47 surface-water basins in New Jersey from 1980 to 2013 were used in model calibration. Updates to the groundwater-flow model include the conversion to a fully three-dimensional model from the previous quasi-three-dimensional model. The new model will allow for potential future uses such as particle tracking or simulation of variable-density groundwater flow that could not be accomplished with earlier versions of the model. Spatially and temporally variable recharge estimated by using a soil-water balance model resulted in a spatially and temporally finer discretization. The Rio Grande water-bearing zone was added to the model as an aquifer layer to refine estimates of simulated flow in Atlantic and Cape May Counties, New Jersey. Hydrogeologic parameters were updated to include the confining units in New Jersey and corresponding hydrogeologic units in Delaware and eastern Maryland. The simulated water levels for the New Jersey Coastal Plain aquifers were compared to water-level measurements made during 1980–2013. The average residual for 4,243 water-level observations for New Jersey (simulated water levels minus measured water levels) is 1.5 feet. The simulated water-level contours for the confined aquifers for 2013 were compared to potentiometric surfaces produced from water levels measured during 2013. Simulated water levels generally matched the 2013 potentiometric surfaces of the confined aquifers in the areas of large withdrawals. Hydrographs of wells in the confined Coastal Plain aquifers of New Jersey show that simulated water levels generally match the magnitude and seasonal variation of the observed water levels. Hydrographs of base flow for the 47 streamgaging stations in New Jersey indicate that most of the simulated and estimated data match reasonably well. Groundwater withdrawals are an important resource for water supply, agricultural, industrial, and commercial needs in the New Jersey Coastal Plain. Groundwater withdrawals from the New Jersey Coastal Plain aquifers have resulted in persistent, regionally extensive cones of depression in the Englishtown aquifer system and Wenonah-Mount Laurel aquifer in Ocean and Monmouth Counties; Wenonah-Mount Laurel and upper, middle, and lower PRM aquifers in Camden County; and Atlantic City 800-foot sand in Atlantic County. Because hydrologic stresses and water-management needs change with time, periodic updates to the groundwater-flow model are required to provide current information about hydrologic conditions in the New Jersey Coastal Plain and to maintain its usefulness as a tool to manage water resources and develop water-resource strategies. The current updates will support the continued application of this model as a tool for evaluating the regional effects of changes in groundwater withdrawals and of current and potential future water-management strategies on groundwater levels in the New Jersey Coastal Plain.

New Jersey Coastal Plain↗

Portrait of a small population of boreal toads ( Anaxyrus boreas )

Much attention has been given to the conservation of small populations, those that are small because of decline, and those that are naturally small. Small populations are of particular interest because ecological theory suggests that they are vulnerable to the deleterious effects of environmental, demographic, and genetic stochasticity as well as natural and human-induced catastrophes. However, testing theory and developing applicable conservation measures for small populations is hampered by sparse data. This lack of information is frequently driven by computational issues with small data sets that can be confounded by the impacts of stressors. We present estimates of demographic parameters from a small population of Boreal Toads (Anaxyrus boreas) that has been surveyed since 2001 by using capture-recapture methods. Estimates of annual adult survival probability are high relative to other Boreal Toad populations, whereas estimates of recruitment rate are low. Despite using simple models, clear patterns emerged from the analyses, suggesting that population size is constrained by low recruitment of adults and is declining slowly. These patterns provide insights that are useful in developing management directions for this small population, and this study serves as an example of the potential for small populations to yield robust and useful information despite sample size constraints.

Herpetologica↗