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USGS2002

The Cascadia Subduction Zone and related subduction systems: Seismic structure, intraslab earthquakes and processes, and earthquake hazards

The following report is the principal product of an international workshop titled “Intraslab Earthquakes in the Cascadia Subduction System: Science and Hazards” and was sponsored by the U.S. Geological Survey, the Geological Survey of Canada and the University of Victoria. This meeting was held at the University of Victoria’s Dunsmuir Lodge, Vancouver Island, British Columbia, Canada on September 18–21, 2000 and brought 46 participants from the U.S., Canada, Latin America and Japan. This gathering was organized to bring together active research investigators in the science of subduction and intraslab earthquake hazards. Special emphasis was given to “warm-slab” subduction systems, i.e., those systems involving young oceanic lithosphere subducting at moderate to slow rates, such as the Cascadia system in the U.S. and Canada, and the Nankai system in Japan. All the speakers and poster presenters provided abstracts of their presentations that were a made available in an abstract volume at the workshop. Most of the authors subsequently provided full articles or extended abstracts for this volume on the topics that they discussed at the workshop. Where updated versions were not provided, the original workshop abstracts have been included. By organizing this workshop and assembling this volume, our aim is to provide a global perspective on the science of warm-slab subduction, to thereby advance our understanding of internal slab processes and to use this understanding to improve appraisals of the hazards associated with large intraslab earthquakes in the Cascadia system. These events have been the most frequent and damaging earthquakes in western Washington State over the last century. As if to underscore this fact, just six months after this workshop was held, the magnitude 6.8 Nisqually earthquake occurred on February 28th, 2001 at a depth of about 55 km in the Juan de Fuca slab beneath the southern Puget Sound region of western Washington. The Governor’s Office of the State of Washington estimated damage at more than US$2 billion, making it among the costliest earthquakes in U.S. history.

California, Oregon, Washington↗

USGS1970

Aquilapollenites (Rouse) Funkhouser — Selected Rocky Mountain taxa and their stratigraphic ranges

The genus Aquilapollenites and its type species, A. quadrilobus, are redescribed, and the latter is illustrated. This report summarizes our present information on stratigraphic ranges of selected Rocky Mountain species and varieties of Aquilapollenites. Of the 17 taxa included in this report, 10 are previously named species, 4 are new species, and 3 are new varieties. One species is transferred from the genus Mancicorpus and another from the genus Parviprojectus. The stratigraphic data concerning Aquilapollenites incorporate available information from U.S. Geological Survey pollen collections.

Alaska, Colorado, Montana, North Dakota, South Dak↗

USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Executive summary

Executive Summary The Williston Basin, which includes parts of Montana, North Dakota, and South Dakota in the United States and parts of Manitoba and Saskatchewan in Canada, has been explored as a potential source of energy resources since the early 20th century; however, commercially viable petroleum drilling and recovery began in earnest in the 1950s. When oil prices rose in the mid-1980s, the number of wells also increased and then subsequently declined. Interest in the Williston Basin increased again in the mid-2000s with the application of new drilling technology. Since then, development has increased rather quickly. Most of this new development has been facilitated by advances in horizontal drilling and hydraulic fracturing technologies. The North Dakota Department of Mineral Resources reported an increase of more than 10,000 producing wells between 2000 and the spring of 2016. In total, 84 percent of those 10,000 wells target the Bakken Formation, which is now home to one of the Nation’s largest energy booms. Current estimates suggest that exploration and drilling activities are expected to continue for the next 20 to 50 years; however, future activity will likely ebb and flow in response to energy prices. Although most energy has been developed on non-Federal property, more than 2,000 wells were started on federally managed lands in the three States that contain the Williston Basin between 2004 and 2015, though these numbers do not reflect whether or not these wells targeted the Bakken Formation. Executive Order no. 13604 (March 22, 2012) directs Federal agencies to improve the timeliness of the permitting process for extracting publically owned minerals, while minimizing negative environmental effects. This means that Federal agencies need information about how energy development may affect other resources they are tasked with managing. One example of where information about potential effects of development may be useful is the Bureau of Land Management’s permitting process. Permits may include stipulations or special conditions that limit unforeseen negative consequences or ameliorate potential conflicts of future development. Federal agencies also need to coordinate permitting actions to ensure that development complies with existing regulations (for example, the Endangered Species Act [16 U.S.C. § 1531 et seq.] or the National Environmental Protection Act [42 U.S.C. § 4321 et seq.]) without unnecessarily restricting or delaying development. Part of this coordination entails agreeing on the information that will be used to assess the potential effects of energy development, which should also improve efficiency of the permitting process. Within the Williston Basin, a group of Federal agencies called the Bakken Federal Executive Group is developing coordination strategies for numerous energy-related issues on Federal lands. This report was developed in cooperation with the Bureau of Land Management to provide them with the best available scientific information to support documentation of potential effects on resources that Federal agencies manage. This report summarizes information about the effects of energy development on air, water, and biological resources within the U.S. part of the Williston Basin. The topics discussed in the report were based on a prioritized list of information needs elicited from the Bakken Federal Executive Group. The list was developed using a process known as structured decision making or decision analysis. This process began with an initial scoping workshop to determine the range of decisions made by those involved directly in managing energy development and resources on public land. U.S. Geological Survey staff then developed a simple quantitative ranking tool to assess which information needs were of greatest importance to those decisions.

Montana, North Dakota, South Dakota↗

USGS2013

U.S. Geological Survey environmental health science strategy — Providing environmental health science for a changing world

Executive Summary America has an abundance of natural resources. We have bountiful clean water, fertile soil, and unrivaled national parks, wildlife refuges, and public lands. These resources enrich our lives and preserve our health and wellbeing. These resources have been maintained because of our history of respect for their value and an enduring commitment to their vigilant protection. Awareness of the social, economic, and personal value of the health of our environment is increasing. The emergence of environmentally driven diseases caused by exposure to contaminants and pathogens is a growing concern worldwide. New health threats and patterns of established threats are affected by both natural and anthropogenic changes to the environment. Human activities are key drivers of emerging (new and re-emerging) health threats. Societal demands for land and natural resources, quality of life, and economic prosperity lead to environmental change. Natural earth processes, climate trends, and related climatic events will compound the environmental impact of human activities. These environmental drivers will influence exposure to disease agents, including viral, bacterial, prion, and fungal pathogens, parasites, synthetic chemicals and substances, natural earth materials, toxins, and other biogenic compounds. The U.S. Geological Survey (USGS) defines environmental health science broadly as the interdisciplinary study of relations among the quality of the physical environment, the health of the living environment, and human health. The interactions among these three spheres are driven by human activities, ecological processes, and natural earth processes; the interactions affect exposure to contaminants and pathogens and the severity of environmentally driven diseases in animals and people. This definition provides USGS with a framework for synthesizing natural science information from across the Bureau and providing it to environmental, natural resource, agricultural, and public health managers. USGS specializes in science at the environment-health interface, by characterizing the processes that affect the interaction among the physical environment, the living environment, and people, and the resulting factors that affect ecological and human exposure to disease agents. The USGS is a Federal science agency with a broad range of natural science expertise relevant to environmental health. USGS provides scientific information and tools as a scientific basis for management and policy decisionmaking. This report describes a 10-year strategy that encompasses the portfolio of USGS environmental health science. It summarizes national environmental health priorities that USGS is best suited to address, and will serve as a strategic framework for USGS environmental health science goals, actions, and outcomes for the next decade. Implementation of this strategy is intended to aid coordination of USGS environmental health activities and to provide a focal point for disseminating information to stakeholders. The “One Health” paradigm advocated by the World Health Organization (WHO; World Health Organization, 2011), and the American Veterinary Medical Association (AVMA; American Veterinary Medical Association, 2008), among others, is based on a general recognition that the health of humans, animals, and the environment are inextricably linked. Thus, successful efforts to protect that health will require increased interdisciplinary research and increased communication and collaboration among the broader scientific and health community. This strategy is built upon that paradigm.

Circular↗

USGS2006

Diet, prey delivery rates, and prey biomass of Northern Goshawks in East-Central Arizona

Recent concern over persistence of Northern Goshawk (Accipiter gentilis) populations in Arizona has stemmed from two long-term demography studies that report substantial yearly fluctuations in productivity and evidence of a declining population. Although many factors could be involved in changes in productivity and population declines, availability of food is one such factor. As part of a demography study on the Sitgreaves portion of the Apache-Sitgreaves National Forest in Arizona, we used remote cameras to assess diets of goshawks. Northern Goshawks preyed upon 22 species during two nesting seasons. Adult pairs tended to specialize on particular species of prey. Prey delivery rates decreased throughout the nesting season with a corresponding increase in biomass in the latter stages of the nestling and fledgling periods. Adults appeared to take larger prey as nestlings increased in age.

Studies in Avian Biology↗

USGS1997

Parasites of lake herring ( Coregonus artedi ) from Lake Superior, with special reference to use of parasites as markers of stock structure

We examined parasites of 152 lake herring ( Coregonus artedi ) collected from three locations in Wisconsin waters of Lake Superior in 1994, four locations in Wisconsin waters in 1996, and one location in Minnesota waters in 1996 to determine; 1) the species composition and relative abundances of parasites in lake herring, 2) the differences in parasite relative abundances across locations sampled, and 3) the utility of parasite relative abundances as markers of stock structure. Parasites from 19 taxa infected lake herring collected in 1994 and 1996; Henneguya zschokkei , Chloromyxum sp., and Cyatho-cephalus truncatus were reported in fishes from Lake Superior for the first time, and Clinostomum mar-ginatum was reported in lake herring for the first time. Significant differences in abundances of eight parasite taxa were found across locations sampled in 1996, with most of the differences occurring between fish from Minnesota and Wisconsin waters. Nonparametric discriminant function analyses correctly classified 105 of the 108 fish (97%) from Wisconsin waters in 1994 and 1996 and also correctly classified 9 of the 13 fish (69%) from the one location in Minnesota waters. This indicated that little mixing of lake herring from those regions occurred and that the potential exists to use parasite abundances as a marker of lake herring stock structure. This was the first time that multivariate analysis of parasites have been used in the Great Lakes to assess stock structure of fishes. Because the technique was highly successful at classifying locations of our samples, we recommend that parasite abundances in lake herring from all areas of the lake be analyzed as part of a larger study to determine whether lake herring from populations throughout the lake can be as accurately classified as were fish in our study.

Journal of Great Lakes Research↗

USGS1993

Inorganic geochemistry of domed peat in Indonesia and its implication for the origin of mineral matter in coal

The inorganic geochemistry of three domed ombrogenous peat deposits in Riau and West Kalimantan provinces, Indonesia, was investigated as a possible modern analogue for certain types of low-ash, low-sulfur coal. Mineral matter entering the deposits is apparently limited to small amounts from the allogenic sources of dryfall, rainfall, and diffusion from substrate pore water. In the low-ash peat in the interior of the deposits, a large portion of the mineral matter is authigenic and has been mobilized and stabilized by hydrological, chemical, and biological processes and conditions. Ash yield and sulfur content are low through most of the peat deposits and average 1.1% and 0.14%, respectively, on a moisture-free basis. Ash and sulfur contents only exceed 5% and 0.3%, respectively, near the base of the deposits, with maximum concentrations of 19.9% ash and 0.56% sulfur. Peat water in all three deposits has a low pH, about 4 units, and low dissolved cation concentration, averaging 14 ppm. Near the base, in the geographic interior of each peat deposit, pH is about two units higher and dissolved cation concentration averages 110 ppm. Relative concentrations of the inorganic constituents vary, resulting in chemical facies in the peat. In general, Si, Al, and Fe are the abundant inorganic constituents, although Mg, Ca, and Na dominate in the middle horizon in the geographic interior of coastal peat deposits. The composition of the three deposits reported in this paper indicates that domed ombrogenous peat deposits will result in low ash and sulfur coal, probably less than 10% ash and 1% sulfur, even if marine rocks are laterally and vertically adjacent to the coal.

Special Paper of the Geological Society of America↗

USGS1954

Subsurface exploration in the Little Susitna district, Matanuska coal field, Alaska

Preliminary geologic mapping of the Little Susitna district in 1952 showed that an area of at least 140 square miles is underlain by coal-bearing rocks of Tertiary age, and indicated that coal beds of minable quality and thickness might be present at several localities. Detailed exploration with a bulldozer and power auger was done at these localities in 1953 and 1954 with special attention to strip-mining possibilities. All the beds examined at the four localities tested were judged to be either too thin or too dirty to be minable under present conditions, and none of them are favorably situated for strip mining.

Alaska↗

USGS1993

Methods for sampling fish communities as part of the National Water-Quality Assessment Program

Fish community structure is characterized in the U.S. Geological Survey's National Water-Quality Assessment Program as part of an integrated physical, chemical, and biological assessment of the Nation's water quality. The objective of the National Water-Quality Assessment characterization of fish community structure is to relate fish community characteristics to physical, chemical, and other biological factors to assess water-quality conditions. To accomplish this, fish community structure is described at sites representing selected environmental settings. In addition, spatial and temporal patterns in fish community structure are examined at local, regional, and national levels. A representative sample of the fish community is collected by sampling a stream reach using two complementary methods. The primary collection method is electrofishing using backpack, towed, or boat-operated electrofishing gear; seining is a secondary technique. Other secondary techniques may be substituted after careful consideration of sampling efficiency and consultation with local fish ecologists. Before fish sampling is conducted, careful consideration must be given to collecting permits; protecting endangered, threatened, and special-concern species; and coordinating sampling efforts with other fish ecologists. After the sample is collected, individual fish are identified to species by ichthyologists. Length and weight measurements are taken, and the presence of external anomalies are recorded.

Open-File Report↗

USGS1960

Zones and zonal variations in welded ash flows

Welded tuffs are recognized as special parts of ash flows, other pyroclastic flows, or, more rarely, air-fall deposits. Ash flows may be emplaced at any temperature below a maximum eruption temperature. Those emplaced above a minimum welding temperature may show any and all degrees of welding and crystallization.

Professional Paper↗

USGS2009

Pesticides in ground water in selected agricultural land-use areas and hydrogeologic settings in Pennsylvania, 2003-07

This report was prepared by the U.S. Geological Survey (USGS) in cooperation with the Pennsylvania Department of Agriculture (PDA) as part of the Pennsylvania Pesticides and Ground Water Strategy (PPGWS). Monitoring data and extensive quality-assurance data on the occurrence of pesticides in ground water during 2003–07 are presented and evaluated; decreases in the land area used for agriculture and corresponding changes in the use of pesticides also are documented. In the Pennsylvania ground waters assessed since 2003, concentrations of pesticides did not exceed any maximum contaminant or health advisory levels established by the U.S. Environmental Protection Agency; PPGWS actions are invoked by the PDA at fractions of these levels and were needed only in areas designated by the PDA for special ground-water protection. Previous investigations through 1998 of pesticides in Pennsylvania ground water identified land use, as a surrogate for pesticide use, and rock type of the aquifer combined with physiography as key hydrogeologic setting variables for understanding aquifer vulnerability to contamination and the common occurrence of atrazine and metolachlor in ground water. Of 20 major hydrogeologic settings in a framework established in 1999 for pesticide monitoring in Pennsylvania, 9 were identified as priorities for data collection in order to change the monitoring status from "inadequate" to "adequate" for the PPGWS. Agricultural and forested land-use areas are decreasing because of urban and suburban growth. In the nine hydrogeologic settings evaluated using 1992 and 2001 data, decreases of up to 12 percent for agricultural land and 10 percent for forested land corresponded to increases of up to 11 percent for urban land. Changes in agricultural pesticide use were computed from crop data. For example, from 1996 to 2004–05, atrazine use declined by about 15 percent to 1,314,000 lb/yr (pounds per year) and metolachlor use increased by about 20 percent to 895,000 lb/yr; these compounds are the two most-used agricultural pesticides statewide. In 2003–07, a baseline assessment of pesticides was conducted in five of nine hydrogeologic settings with inadequate monitoring data—the Blue Ridge crystalline and Triassic Lowland siliciclastic, Eastern Lake surficial, Devonian-Silurian carbonate, Great Valley siliciclastic, and Northeastern Glaciated surficial settings. Between 20 and 30 wells in each setting were monitored. Of the 126 wells sampled, 96 well-water samples were analyzed for at least 52 pesticide compounds at the USGS National Water Quality Laboratory (NWQL) using a method with a minimum reporting level (MRL) at or above 0.002 µg/L (micrograms per liter). Of the 96 well waters analyzed by NWQL, 43 had measureable concentrations of one or more pesticides. Atrazine and (or) deethylatrazine (CIAT), a degradation product of atrazine, were reported at or above the MRL in 39 of the 43 well waters. Neither atrazine nor CIAT were reported at concentrations exceeding 0.10 µg/L; all measured concentrations in these five settings were below PPGWS action levels. Metolachlor was present in 7 of the 43 well waters with measureable concentrations of 1 or more pesticides; however, concentrations were below the MRL. The other 30 samples (10 of 20 wells in the Blue Ridge crystalline and Triassic Lowland siliciclastic setting and all 20 wells in the Eastern Lake surficial setting) were analyzed for at least 19 pesticide compounds at the Pennsylvania Department of Environmental Protection Laboratory (PADEPL); the PADEPL reported no concentrations of pesticides at or above an MRL of 0.10 µg/L. Statistical tests using the NWQL analytical results showed correlations between pesticide occurrence and two indicators of water-quality degradation—the occurrence of total coliform bacteria and nitrate concentration. A 2 × 2 contingency-table test indicated a relation between presence or absence of atrazine or metolachlor and presence or absence of bacteria only for the 10 wells representing the Blue Ridge crystalline and Triassic Lowland siliciclastic setting. Results of Spearman’s rank test showed strong positive correlations in the Devonian-Silurian carbonate setting between 1) the number of pesticides above the MRLs and nitrate concentration, and 2) concentrations of atrazine and nitrate. Atrazine concentration and nitrate concentration also showed a statistically significant positive correlation in the Great Valley siliciclastic setting. An additional component of baseline monitoring was to evaluate changes in pesticide concentration in water from wells representing hydrogeologic settings most vulnerable to contamination from pesticides. In 2003, 16 wells originally sampled in the 1990s were resampled—4 each in the Appalachian Mountain carbonate, Triassic Lowland siliciclastic, Great Valley carbonate, and Piedmont carbonate settings. Nine of these wells, where pesticide concentrations from 1993 and 2003 were analyzed at the NWQL, were chosen for a paired-sample analysis using concentrations of atrazine and metolachlor. A statistically significant decrease in atrazine concentration was identified using the Wilcoxon signed-rank test (p = 0.004); significant temporal changes in metolachlor concentrations were not observed (p = 0.625). Monitoring in three areas of special ground-water protection, where selected pesticide concentrations in well water were at or above the PPGWS action levels, was done at wells BE 1370 (Berks County, Oley Township), BA 437 (Blair County, North Woodbury Township), and LN 1842 (Lancaster County, Earl Township). Co-occurrence of pesticide-degradation products with parent compounds was documented for the first time in ground-water samples collected from these three wells. Degradation products of atrazine, cyanazine, acetochlor, alachlor, and metolachlor were commonly at larger concentrations than the parent compound in the same water sample. Pesticide occurrence in water from wells neighboring the hot-spot wells was highly variable; however, the same sets of pesticide compounds that were present in wells BA 437, BE 1370, and LN 1842 were present to some degree in water from neighboring wells. To evaluate temporal changes in concentration, nonparametric statistical tests were used to determine overall and seasonal monotonic trends. Concentrations of alachlor, atrazine, metolachlor, and nitrate were examined using the 5-year (2003–07) and the long-term data from wells BA 437 and LN 1842 (1996–2007 and 1995–2007, respectively), and the long-term data for well BE 1370 (1998–2007); results showed either downward trends or no trends. Trends in acetochlor concentrations were tested only at well LN 1842 using the 5-year data; no trends were observed. Homogeneity of trend tests indicated statistically significant downward concentration trends in the long-term data were due to seasonal trends as follows: BA 437—alachlor and atrazine (summer); BE 1370—atrazine and metolachlor (winter) and alachlor (winter and spring); LN 1842—alachlor (summer and fall) and atrazine (spring and fall).

Pennsylvania↗

USGS2011

Evaluation of the genetic distinctiveness of Greater Sage-grouse in the Bi-State Planning Area

The purpose of this study was to further characterize a distinct population of Greater Sage-grouse: the population located along the border between Nevada and California (Bi-State Planning Area) and centered around the Mono Basin. This population was previously determined to be genetically distinct from other Greater Sage-grouse populations across their range. Previous genetic work focused on characterizing genetic variation across the species' range and thereby used a coarse sampling approach for species characterization. The goal of this study was to investigate this population further by obtaining samples from breeding locations within the population and analyzing those samples with the same mitochondrial and microsatellite loci used in previous studies. Blood samples were collected in six locations within the Bi-State Planning Area. Genetic data from subpopulations were then compared with each other and also with two populations outside of the Bi-State Planning Area. Particular attention was paid to subpopulation boundaries and internal dynamics by drawing comparisons among particular regions within the Bi-State Planning Area and regions proximal to it. All newly sampled subpopulations contained mitochondrial haplotypes and allele frequencies that were consistent with the genetically unique Bi-State (Mono Basin) Greater Sage-grouse described previously. This reinforces the fact that this group of Greater Sage-grouse is genetically unique and warrants special attention. Maintaining the genetic integrity of this population could protect the evolutionary potential of this population of Greater Sage-grouse. Additionally, the White Mountains subpopulation was found to be significantly distinct from all other Bi-State subpopulations.

Open-File Report↗

USGS2005

The fishes of George Washington Carver National Monument, Missouri, 2003

Fish were collected at six sites at George Washington Carver National Monument by seining and electrofishing during a base-flow period on July 17-18, 2003. Approximately 700 fish were collected and identified at the six sampling sites. Those individuals represented 17 species (and 1 hybrid) and 13 genera. The number of species collected at the five stream sites ranged from 9 to 12; a hybrid sunfish and 4 species were collected from a pond. Fish collected at stream sites were typical of small headwater streams and no species collected in this study are federally-listed threatened or endangered species. The three most common species were the southern redbelly dace, central stoneroller, and green sunfish. Some differences existed between the assemblages (groups of species) collected in 2003 and in the previous inventories. Four of the 17 fish species collected in this inventory previously had not been collected at the monument. However, 11 species collected in one or more of the previous inventories were not collected in this effort. There is no indication that a change in environmental conditions is responsible for the absence of these species; more likely reasons are seasonal variability, extirpation, low population density, and misidentification. Four species collected at George Washington Carver National Monument may be of special interest to National Park Service managers and others. The cardinal shiner and stippled darter are endemic to the Ozark Plateaus. The Arkansas darter is considered a species of conservation concern by the State of Missouri. The grass carp is an introduced species.

Scientific Investigations Report↗

USGS2012

Status of groundwater quality in the California Desert Region, 2006-2008: California GAMA Priority Basin Project

Groundwater quality in six areas in the California Desert Region (Owens, Antelope, Mojave, Coachella, Colorado River, and Indian Wells) was investigated as part of the Priority Basin Project of the Groundwater Ambient Monitoring and Assessment (GAMA) Program. The GAMA Priority Basin Project is being conducted by the California State Water Resources Control Board in collaboration with the U.S. Geological Survey (USGS) and the Lawrence Livermore National Laboratory. The six Desert studies were designed to provide a spatially unbiased assessment of the quality of untreated groundwater in parts of the Desert and the Basin and Range hydrogeologic provinces, as well as a statistically consistent basis for comparing groundwater quality to other areas in California and across the Nation. Samples were collected by the USGS from September 2006 through April 2008 from 253 wells in Imperial, Inyo, Kern, Los Angeles, Mono, Riverside, and San Bernardino Counties. Two-hundred wells were selected using a spatially distributed, randomized grid-based method to provide a spatially unbiased representation of the study areas (grid wells), and fifty-three wells were sampled to provide additional insight into groundwater conditions (additional wells). The status of the current quality of the groundwater resource was assessed based on data from samples analyzed for volatile organic compounds (VOCs), pesticides, and inorganic constituents such as major ions and trace elements. Water-quality data from the California Department of Public Health (CDPH) database also were incorporated in the assessment. The status assessment is intended to characterize the quality of untreated groundwater resources within the primary aquifer systems of the Desert Region, not the treated drinking water delivered to consumers by water purveyors. The primary aquifer systems (hereinafter, primary aquifers) in the six Desert areas are defined as that part of the aquifer corresponding to the perforation intervals of wells listed in the CDPH database. Relative-concentrations (sample concentration divided by the benchmark concentration) were used as the primary metric for evaluating groundwater quality for those constituents that have Federal and (or) California benchmarks. A relative-concentration (RC) greater than (>) 1.0 indicates a concentration above a benchmark, and an RC less than or equal to (≤) 1.0 indicates a concentration equal to or below a benchmark. Organic and special-interest constituent RCs were classified as “low” (RC ≤ 0.1), “moderate” (0.1 < RC ≤ 1.0), or “high” (RC > 1.0). Inorganic constituent RCs were classified as “low” (RC ≤ 0.5), “moderate” (0.5 < RC ≤ 1.0), or “high” (RC > 1.0). A lower threshold value RC was used to distinguish between low and moderate RCs for organic constituents because these constituents are generally less prevalent and have smaller RCs than inorganic constituents. Aquifer-scale proportion was used as the primary metric for evaluating regional-scale groundwater quality. High aquifer-scale proportion was defined as the percentage of the area of the primary aquifers with an RC greater than 1.0 for a particular constituent or class of constituents; percentage is based on an areal rather than a volumetric basis. Moderate and low aquifer-scale proportions were defined as the percentage of the primary aquifers with moderate and low RCs, respectively. Two statistical approaches—grid-based and spatially weighted—were used to evaluate aquifer-scale proportions for individual constituents and classes of constituents. Grid-based and spatially weighted estimates were comparable in the Desert Region (within 90 percent confidence intervals). The status assessment determined that one or more inorganic constituents with health-based benchmarks had high RCs in 35.4 percent of the Desert Region’s primary aquifers, moderate RCs in 27.4 percent, and low RCs in 37.2 percent. The inorganic constituents with health-based benchmarks having the largest high aquifer-scale proportions were arsenic (17.8 percent), boron (11.4 percent), fluoride (8.9 percent), gross-alpha radioactivity (6.6 percent), molybdenum (5.7 percent), strontium (3.7 percent), vanadium (3.6 percent), uranium (3.2 percent), and perchlorate (2.4 percent). Inorganic constituents with non-health-based benchmarks were also detected at high RCs in 18.6 percent and at moderate RCs in 16.0 percent of the Desert Region’s primary aquifers. In contrast, organic constituents had high RCs in only 0.3 percent of the Desert Region’s primary aquifers, moderate in 2.0 percent, low in 48.0 percent, and were not detected in 49.7 percent of the primary aquifers in the Desert Region. Of 149 organic constituents analyzed for all six study areas, 42 constituents were detected. Six organic constituents, carbon tetrachloride, chloroform, 1,2-dichloropropane, dieldrin, 1,2-dichloroethane, and tetrachloroethene, were found at moderate RCs in one or more of the grid wells. One constituent, N -nitrosodimethylamine, a special-interest VOC, was detected at a high RC in one well. Thirty-nine organic constituents were detected only at low concentrations. Three organic constituents were frequently detected (in more than 10 percent of samples from grid wells): chloroform, simazine, and deethylatrazine.

California↗

USGS2013

Computing ordinary least-squares parameter estimates for the National Descriptive Model of Mercury in Fish

A specialized technique is used to compute weighted ordinary least-squares (OLS) estimates of the parameters of the National Descriptive Model of Mercury in Fish (NDMMF) in less time using less computer memory than general methods. The characteristics of the NDMMF allow the two products X'X and X'y in the normal equations to be filled out in a second or two of computer time during a single pass through the N data observations. As a result, the matrix X does not have to be stored in computer memory and the computationally expensive matrix multiplications generally required to produce X'X and X'y do not have to be carried out. The normal equations may then be solved to determine the best-fit parameters in the OLS sense. The computational solution based on this specialized technique requires O(8 p 2 +16 p ) bytes of computer memory for p parameters on a machine with 8-byte double-precision numbers. This publication includes a reference implementation of this technique and a Gaussian-elimination solver in preliminary custom software.

Techniques and Methods↗

USGS1985

Classification of wetlands and deepwater habitats of the United States

This classification, to be used in a new inventory of wetlands and deepwater habitats of the United States, is intended to describe ecological taxa, arrange them in a system useful to resource managers, furnish units for mapping, and provide uniformity of concepts and terms. Wetlands are defined by plants (hydrophytes), soils (hydric soils), and frequency of flooding. Ecologically related areas of deep water, traditionally not considered wetlands, are included in the classification as deepwater habitats.Systems form the highest level of the classification hierarchy; five are defined-Marine, Estuarine, Riverine, Lacustrine, and Palustrine. Marine and Estuarine Systems each have two Subsystems, Subtidal and Intertidal; the Riverine System has four Subsystems, Tidal, Lower Perennial, Upper Perennial, and Intermittent; the Lacustrine has two, Littoral and Limnetic; and the Palustrine has no Subsystems.Within the Subsystems, Classes are based on substrate material and flooding regime, or on vegetative life form. The same Classes may appear under one or more of the Systems or Subsystems. Six Classes are based on substrate and flooding regime: (1) Rock Bottom with a substrate of bedrock, boulders, or stones; (2) Unconsolidated Bottom with a substrate of cobbles, gravel, sand, mud, or organic material; (3) Rocky Shore with the same substrates as Rock Bottom; (4) Unconsolidated Shore with the same substrates as Unconsolidated Bottom; (5) Streambed with any of the substrates; and (6) Reef with a substrate composed of the living and dead remains of invertebrates (corals, mollusks, or worms). The bottom Classes, (1) and (2) above, are flooded all or most of the time and the shore Classes, (3) and (4), are exposed most of the time. The Class Streambed is restricted to channels of intermittent streams and tidal channels that are dewatered at low tide. The life form of the dominant vegetation defines the five Classes based on vegetative form: (1) Aquatic Bed, dominated by plants that grow principally on or below the surface of the water; (2) Moss-Lichen Wetland, dominated by mosses or lichens; (3) Emergent Wetland, dominated by emergent herbaceous angiosperms; (4) Scrub-Shrub Wetland, dominated by shrubs or small trees; and (5) Forested Wetland, dominated by large trees.The Dominance Type, which is named for the dominant plant or animal forms, is the lowest level of the classification hierarchy. Only examples are provided for this level; Dominance Types must be developed by individual users of the classification.Modifying terms applied to the Classes or Subclasses are essential for use of the system. In tidal areas, the type and duration of flooding are described by four Water Regime Modifiers: subtidal, irregularly exposed, regularly flooded, and irregularly flooded. In nontidal areas, eight Regimes are used: permanently flooded, intermittently exposed, semipermanently flooded, seasonally flooded, saturated, temporarily flooded, intermittently flooded, and artificially flooded. A hierarchical system of Water Chemistry Modifiers, adapted from the Venice System, is used to describe the salinity of the water. Fresh waters are further divided on the basis of pH. Use of a hierarchical system of soil modifiers taken directly from U.S. soil taxonomy is also required. Special modifiers are used where appropriate: excavated, impounded, diked, partly drained, farmed, and artificial.Regional differences important to wetland ecology are described through a regionalization that combines a system developed for inland areas by R. G. Bailey in 1976 with our Marine and Estuarine provinces.The structure of the classification allows it to be used at any of several hierarchical levels. Special data required for detailed application of the system are frequently unavailable, and thus data gathering may be prerequisite to classification. Development of rules by the user will be required for specific map scales. Dominance Types and relationships of plant and anima

FWS/OBS↗

USGS2017

Environmental Escherichia coli : Ecology and public health implications - A review

Escherichia coli is classified as a rod-shaped, Gram-negative bacterium in the family Enterobacteriaceae . The bacterium mainly inhabits the lower intestinal tract of warm-blooded animals, including humans, and is often discharged into the environment through feces or wastewater effluent. The presence of E. coli in environmental waters has long been considered as an indicator of recent fecal pollution. However, numerous recent studies have reported that some specific strains of E. coli can survive for long periods of time, and potentially reproduce, in extra-intestinal environments. This indicates that E. coli can be integrated into indigenous microbial communities in the environment. This naturalization phenomenon calls into question the reliability of E. coli as a fecal indicator bacterium (FIB). Recently, many studies reported that E. coli populations in the environment are affected by ambient environmental conditions affecting their long-term survival. Large-scale studies of population genetics provide the diversity and complexity of E. coli strains in various environments, affected by multiple environmental factors. This review examines the current knowledge on the ecology of E. coli strains in various environments in regards to its role as a FIB and as a naturalized member of indigenous microbial communities. Special emphasis is given on the growth of pathogenic E. coli in the environment, and the population genetics of environmental members of the genus Escherichia . The impact of environmental E. coli on water quality and public health is also discussed.

Journal of Applied Microbiology↗

USGS1980

Planning and design of studies for river-quality assessment in the Truckee and Carson River basins, California and Nevada

The objectives of the Geological Survey 's river-quality assessment in the Truckee and Carson River basins in California and Nevada are to identify the significant resource management problems; to develop techniques to assess the problems; and to effectively communicate results to responsible managers. Six major elements of the assessment to be completed by October 1981 are (1) a detailing of the legal, institutional, and structural development of water resources in the basins and the current problems and conflicts; (2) a compilation and synthesis of the physical hydrology of the basins; (3) development of a special workshop approach to involve local management in the direction and results of the study; (4) development of a comprehensive streamflow model emcompassing both basins to provide a quantitative hydrologic framework for water-quality analysis; (5) development of a water-quality transport model for selected constituents and characteristics on selected reaches of the Truckee River; and (6) a detailed examination of selected fish habitats for specified reaches of the Truckee River. Progress will be periodically reported in reports, maps, computer data files, mathematical models, a bibliography, and public presentations. In building a basic framework to develop techniques, the basins were viewed as a single hydrologic unit because of interconnecting diversion structures. The framework comprises 13 hydrographic subunits to facilitate modeling and sampling. Several significant issues beyond the scope of the assessment were considered as supplementary proposals; water-quality loadings in Truckee and Carson Rivers, urban runoff in Reno and management alternatives, and a model of limnological processes in Lahontan Reservoir. (USGS)

California, Nevada↗