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Determination of Baseline Periods of Record for Selected Streamflow-Gaging Stations in New Jersey for Determining Ecologically Relevant Hydrologic Indices (ERHI)

Hydrologic changes in New Jersey stream basins resulting from human activity can affect the flow and ecology of the streams. To assess future changes in streamflow resulting from human activity an understanding of the natural variability of streamflow is needed. The natural variability can be classified using Ecologically Relevant Hydrologic Indices (ERHIs). ERHIs are defined as selected streamflow statistics that characterize elements of the flow regime that substantially affect biological health and ecological sustainability. ERHIs are used to quantitatively characterize aspects of the streamflow regime, including magnitude, duration, frequency, timing, and rate of change. Changes in ERHI values can occur as a result of human activity, and changes in ERHIs over time at various stream locations can provide information about the degree of alteration in aquatic ecosystems at or near those locations. New Jersey streams can be divided into four classes (A, B, C, or D), where streams with similar ERHI values (determined from cluster analysis) are assigned the same stream class. In order to detect and quantify changes in ERHIs at selected streamflow-gaging stations, a 'baseline' period is needed. Ideally, a baseline period is a period of continuous daily streamflow record at a gaging station where human activity along the contributing stream reach or in the stream's basin is minimal. Because substantial urbanization and other development had already occurred before continuous streamflow-gaging stations were installed, it is not possible to identify baseline periods that meet this criterion for many reaches in New Jersey. Therefore, the baseline period for a considerably altered basin can be defined as a period prior to a substantial human-induced change in the drainage basin or stream reach (such as regulations or diversions), or a period during which development did not change substantially. Index stations (stations with minimal urbanization) were defined as streamflow-gaging stations in basins that contain less than 15 percent urban land use throughout the period of continuous streamflow record. A minimum baseline period of record for each stream class was determined by comparing the variability of selected ERHIs among consecutive 5-, 10-, 15-, and 20-year time increments for index stations. On the basis of this analysis, stream classes A and D were assigned a minimum of 20 years of continuous record as a baseline period and stream classes B and C, a minimum of 10 years. Baseline periods were calculated for 85 streamflow-gaging stations in New Jersey with 10 or more years of continuous daily streamflow data, and the values of 171 ERHIs also were calculated for these baseline periods for each station. Baseline periods were determined by using historical streamflow-gaging station data, estimated changes in impervious surface in the drainage basin, and statistically significant changes in annual base flow and runoff. Historical records were reviewed to identify years during which regulation, diversions, or withdrawals occurred in the drainage basins. Such years were not included in baseline periods of record. For some sites, the baseline period of record was shorter than the minimum period of record specified for the given stream class. In such cases, the baseline period was rated as 'poor'. Impervious surface was used as an indicator of urbanization and change in streamflow characteristics owing to increases in storm runoff and decreases in base flow. Percentages of impervious surface were estimated for 85 streamflow-gaging stations from available municipal population-density data by using a regression model. Where the period of record was sufficiently long, all years after the impervious surface exceeded 10 to 20 percent were excluded from the baseline period. The percentage of impervious surface also was used as a criterion in assigning qualitative ratings to baseline periods. Changes in trends of annual base fl

Scientific Investigations Report↗

Sediment transport to and from small impoundments in northeast Kansas, March 2009 through September 2011

The U.S. Geological Survey, in cooperation with the Kansas Water Office, investigated sediment transport to and from three small impoundments (average surface area of 0.1 to 0.8 square miles) in northeast Kansas during March 2009 through September 2011. Streamgages and continuous turbidity sensors were operated upstream and downstream from Atchison County, Banner Creek, and Centralia Lakes to study the effect of varied watershed characteristics and agricultural practices on sediment transport in small watersheds in northeast Kansas. Atchison County Lake is located in a predominantly agricultural basin of row crops, with wide riparian buffers along streams, a substantial amount of tile drainage, and numerous small impoundments (less than 0.05 square miles; hereafter referred to as “ponds”). Banner Creek Lake is a predominantly grassland basin with numerous small ponds located in the watershed, and wide riparian buffers along streams. Centralia Lake is a predominantly agricultural basin of row crops with few ponds, few riparian buffers along streams, and minimal tile drainage. Upstream from Atchison County, Banner Creek, and Centralia Lakes 24, 38, and 32 percent, respectively, of the total load was transported during less than 0.1 percent (approximately 0.9 days) of the time. Despite less streamflow in 2011, larger sediment loads during that year indicate that not all storm events transport the same amount of sediment; larger, extreme storms during the spring may transport much larger sediment loads in small Kansas watersheds. Annual sediment yields were 360, 400, and 970 tons per square mile per year at Atchison County, Banner, and Centralia Lake watersheds, respectively, which were less than estimated yields for this area of Kansas (between 2,000 and 5,000 tons per square mile per year). Although Centralia and Atchison County Lakes had similar percentages of agricultural land use, mean annual sediment yields upstream from Centralia Lake were about 2.7 times those at Atchison County or Banner Creek Lakes. These data indicate larger yields of sediment from watersheds with row crops and those with fewer small ponds, and smaller yields in watersheds which are primarily grassland, or agricultural with substantial tile drainage and riparian buffers along streams. These results also indicated that a cultivated watershed can produce yields similar to those observed under the assumed reference (or natural) condition. Selected small ponds were studied in the Atchison County Lake watershed to characterize the role of small ponds in sediment trapping. Studied ponds trapped about 8 percent of the sediment upstream from the sediment-sampling site. When these results were extrapolated to the other ponds in the watershed, differences in the extent of these ponds was not the primary factor affecting differences in yields among the three watersheds. However, the selected small ponds were both 45 years old at the time of this study, and have reduced capacity because of being filled in with sediments. Additionally, trapping efficiency of these small ponds decreased over five observed storms, indicating that processes that suspended or resuspended sediments in these shallow ponds, such as wind and waves, affected their trapping efficiencies. While small ponds trapped sediments in small storms, they could be a source of sediment in larger or more closely spaced storm events. Channel slope was similar at all three watersheds, 0.40, 0.46, and 0.31 percent at Atchison County, Banner Creek, and Centralia Lake watersheds, respectively. Other factors, such as increased bank and stream erosion, differences in tile drainage, extent of grassland, or riparian buffers, could be the predominant factors affecting sediment yields from these basins. These results show that reference-like sediment yields may be observed in heavily agricultural watersheds through a combination of field-scale management activities and stream channel protection. When computing loads using published erosion rates obtained by single-point survey methodology, streambank contributions from the main stem of Banner Creek are three times more than the sediment load observed by this study at the sediment sampling site at Banner Creek, 2.6 times more than the sediment load observed by this study at the sediment sampling site at Clear Creek (upstream from Atchison County Lake), and are 22 percent of the load observed by this study at the sediment sampling site at Black Vermillion River above Centralia Lake. Comparisons of study sites to similarly sized urban and urbanizing watersheds in Johnson County, Kansas indicated that sediment yields from the Centralia Lake watershed were similar to those in construction-affected watersheds, while much smaller sediment yields in the Atchison County and Banner Creek watersheds were comparable to stable, heavily urbanized watersheds. Comparisons of study sites to larger watersheds upstream from Tuttle Creek Lake indicate the Black Vermillion River watershed continues to have high sediment yields despite 98 percent of sediment from the Centralia watershed (a headwater of the Black Vermillion River) being trapped in Centralia Lake. Estimated trapping efficiencies for the larger watershed lakes indicated that Banner Creek and Centralia Lakes trapped 98 percent of incoming sediment, whereas Atchison County Lake trapped 72 percent of incoming sediment during the 3-year study period.

Kansas↗

Contributions of Phosphorus from Groundwater to Streams in the Piedmont, Blue Ridge, and Valley and Ridge Physiographic Provinces, Eastern United States

Phosphorus from natural and human sources is likely to be discharged from groundwater to streams in certain geochemical environments. Water-quality data collected from 1991 through 2007 in paired networks of groundwater and streams in different hydrogeologic and land-use settings of the Piedmont, Blue Ridge, and Valley and Ridge Physiographic Provinces in the eastern United States were compiled and analyzed to evaluate the sources, fate, and transport of phosphorus. The median concentrations of phosphate in groundwater from the crystalline and siliciclastic bedrock settings (0.017 and 0.020 milligrams per liter, respectively) generally were greater than the median for the carbonate setting (less than 0.01 milligrams per liter). In contrast, the median concentrations of dissolved phosphate in stream base flow from the crystalline and siliciclastic bedrock settings (0.010 and 0.014 milligrams per liter, respectively) were less than the median concentration for base-flow samples from the carbonate setting (0.020 milligrams per liter). Concentrations of phosphorus in many of the stream base-flow and groundwater samples exceeded ecological criteria for streams in the region. Mineral dissolution was identified as the dominant source of phosphorus in the groundwater and stream base flow draining crystalline or siliciclastic bedrock in the study area. Low concentrations of dissolved phosphorus in groundwater from carbonate bedrock result from the precipitation of minerals and (or) from sorption to mineral surfaces along groundwater flow paths. Phosphorus concentrations are commonly elevated in stream base flow in areas underlain by carbonate bedrock, however, presumably derived from in-stream sources or from upland anthropogenic sources and transported along short, shallow groundwater flow paths. Dissolved phosphate concentrations in groundwater were correlated positively with concentrations of silica and sodium, and negatively with alkalinity and concentrations of calcium, magnesium, chloride, nitrate, sulfate, iron, and aluminum. These associations can result from the dissolution of alkali feldspars containing phosphorus; the precipitation of apatite; the precipitation of calcite, iron hydroxide, and aluminum hydroxide with associated sorption of phosphate ions; and the potential for release of phosphate from iron-hydroxide and other iron minerals under reducing conditions. Anthropogenic sources of phosphate such as fertilizer and manure and processes such as biological uptake, evapotranspiration, and dilution also affect phosphorus concentrations. The phosphate concentrations in surface water were not correlated with the silica concentration, but were positively correlated with concentrations of major cations and anions, including chloride and nitrate, which could indicate anthropogenic sources and effects of evapotranspiration on surface-water quality. Mixing of older, mineralized groundwater with younger, less mineralized, but contaminated groundwater was identified as a critical factor affecting the quality of stream base flow. In-stream processing of nutrients by biological processes also likely increases the phosphorus concentration in surface waters. Potential geologic contributions of phosphorus to groundwater and streams may be an important watershed-management consideration in certain hydrogeologic and geochemical environments. Geochemical controls effectively limit phosphorus transport through groundwater to streams in areas underlain by carbonate rocks; however, in crystalline and siliciclastic settings, phosphorus from mineral or human sources may be effectively transported by groundwater and contribute a substantial fraction to base-flow stream loads.

Scientific Investigations Report↗

Geologic map of the Artemis Chasma quadrangle (V-48), Venus

Artemis, named for the Greek goddess of the hunt, represents an approximately 2,600 km diameter circular feature on Venus, and it may represent the largest circular structure in our solar system. Artemis, which lies between the rugged highlands of Aphrodite Terra to the north and relatively smooth lowlands to the south, includes an interior topographic high surrounded by the 2,100-km-diameter, 25- to 200-km-wide, 1- to 2-km-deep circular trough, called Artemis Chasma, and an outer rise that grades outward into the surrounding lowland. Although several other chasmata exist in the area and globally, other chasmata have generally linear trends that lack the distinctive circular pattern of Artemis Chasma. The enigmatic nature of Artemis has perplexed researchers since Artemis Chasma was first identified in Pioneer Venus data. Although Venus' surface abounds with circular to quasi-circular features at a variety of scales, including from smallest to largest diameter features: small shield edifices (>1 km), large volcanic edifices (100-1,000 km), impact craters (1-270 km), coronae (60-1,010 km), volcanic rises and crustal plateaus (~1,500-2,500 km), Artemis defies classification into any of these groups. Artemis dwarfs Venus' largest impact crater, Mead (~280 km diameter); Artemis also lacks the basin topography, multiple ring structures, and central peak expected for large impact basins. Topographically, Artemis resembles some Venusian coronae; however Artemis is an order of magnitude larger than the average corona (200 km) and about twice the size of Heng-O Corona (which is 1,010 km in diameter), the largest of Venusian coronae. In map view Artemis' size and shape resemble volcanic rises and crustal plateaus; however, both of these classes of features differ topographically from Artemis. Volcanic rises and crustal plateaus form broad domical regions, and steep-sided regions with flat tops, respectively; furthermore, neither rises nor plateaus include circular troughs. So although it seems clear what Artemis is not, there is little consensus about what Artemis is, much less how Artemis formed. Debate during the past decade has resulted in the proposal of at least four hypotheses for Artemis' formation. The first (herein referred to as H1) is that Artemis Chasma represents a zone of northwest-directed convergence and subduction. The second hypothesis (herein referred to as H2) is that Artemis consists of a composite structure with a part of its interior region marking the exposure of deformed ductile deep-crustal rocks analogous to a terrestrial metamorphic core complex. The third (herein referred to as H3) is that Artemis reflects the surface expression of an ancient (>3.5 Ga) huge bolide impact event on cold strong lithosphere. The fourth hypothesis (herein referred to as H4) is that Artemis marks the surface expression of a deep mantle plume. Each of these hypotheses holds different implications for Venus geodynamics and evolution processes, and for terrestrial planet processes in general. Viability of H1 would provide support that terrestrial-like plate-tectonic processes once occurred on Earth's sister planet. The feasibility of H2 would require high values of crustal extension and therefore imply that significant horizontal displacements occurred on Venus-displacement that may or may not be related to terrestrial-like plate-tectonic processes. The possibility of H3 would suggest that Venus' surface is extremely old, and that Venus has experienced very little dynamic activity for the last 3.5 billion years or more; this would further imply that Venus is essentially tectonically dead, and has been for most of its history. This view contrasts strongly with studies that highlight a rich history of Venus including activity at least as young as 750 million years ago, and quite likely up to the present. If H4 has credibility, then Artemis could provide clues to cooling mechanisms of Earth's sister planet. Each of these hypotheses

Scientific Investigations Map↗

Evaluation of Ground Water Near Sidney, Western Nebraska, 2004-05

During times of drought, ground water in the Lodgepole Creek area around Sidney, western Nebraska, may be insufficient to yield adequate supplies to private and municipal wells. Alternate sources of water exist in the Cheyenne Tablelands north of the city, but these sources are limited in extent. In 2003, the U.S. Geological Survey and the South Platte Natural Resources District began a cooperative study to evaluate the ground water near Sidney. The 122-square-mile study area lies in the south-central part of Cheyenne County. with Lodgepole Creek and Sidney Draw occupying the southern and western parts of the study area and the Cheyenne Tablelands occupying most of the northern part of the study area. Twenty-nine monitoring wells were installed and then sampled in 2004 and 2005 for physical characteristics, nutrients, major ions, and stable isotopes. Some of the 29 sites also were sampled for ground-water age dating. Ground water is limited in extent in the tableland areas. Spring 2005 depths to ground water in the tableland areas ranged from 95 to 188 feet. Ground-water flow in the tableland areas primarily is northeasterly. South of a ground-water divide, ground-water flows southeasterly toward Lodgepole Creek Valley. Water samples from monitoring wells in the Ogallala Group were predominantly a calcium bicarbonate type, and those from monitoring wells in the Brule Formation were a sodium bicarbonate type. Water samples from monitoring wells open to the Brule sand were primarily a calcium bicarbonate type at shallow depths and a sodium bicarbonate type at deeper depths. Ground water in Lodgepole Creek Valley had a strong sodium signature, which likely results from most of the wells being open to the Brule. Concentrations of sodium and nitrate in ground-water samples from the Ogallala were significantly different than in water samples from the Brule and Brule sand. In addition, significant differences were seen in concentrations of calcium between water samples from the Ogallala and the Brule sand. Median concentrations of nitrate varied by aquifer-2.6 milligrams per liter (Ogallala). 2.1 milligrams per liter (Brute), and 1.3 milligrams per liter (Brule sand). The chemistry of the ground water in the study area indicates that ground water flows from recharge areas in both the tableland areas and Lodgepole Creek Valley to discharge areas beyond the study area. Recharging water that percolates into the Ogallala in the tableland areas either enters the Ogallala aquifer. flows along the Ogallala-Brule contact, or enters Brule fractures or sand. Although limited in amount, ground water flowing along the Ogallala-Brule contact or in the Brule fractures or sand appears to be the predominant means by which water moves from the tableland areas to Lodgepole Creek Valley. Apparent ground-water ages from chlorofluorocarbon and sulfur hexafluoride data generally were similar. Age of ground water for most monitoring wells located in Lodgepole Creek Valley ranged from the mid- to late 1960s to the early 1990s. Ages of ground water in samples from monitoring wells located in tableland draw areas ranged from the mid-1980s to the early 1990s. Water in the Brule (areas without known secondary permeability structures) or deeper Brule sand aquifer was substantially older than water in the Ogallala aquifer and probably was recharged between 10,000 to 30,000 years before present. The stable isotopic data indicate that the ground water in the study area probably originated from precipitation. Ground water in Lodgepole Creek and the tableland areas are similar in chemistry. However, there appears to be limited interaction between ground water within the Ogallala to the north of Sidney and Lodgepole Creek Valley. Available data indicate that although some of the ground water in the Ogallala likely flows across the Ogallala-Brule contact, most of it does not move toward Lodgepole Creek.

Nebraska↗

Effects of beaver dams and ponds on the transport and deposition of suspended sediment in urban streams of the Tualatin River Basin, northwestern Oregon

Significant Findings This study investigated the effects of natural beaver dams and ponds on sediment transport and deposition in two urban beaver-affected reaches in the Tualatin River Basin, northwestern Oregon. Data were collected during 2016–17 from Fanno Creek at Greenway Park (between SW Hall Boulevard and SW Pearson Court) and Bronson Creek (between NW Laidlaw Road and NW Kaiser Road); each study reach contained multiple beaver dams. Continuous turbidity, discrete suspended-sediment samples, and streamflow measurements were collected during storms and baseflow periods to calculate suspended-sediment loads (SSLs) and to compare differences in SSLs upstream and downstream from the two beaver-affected reaches. Turbidity was measured continuously upstream, within, and downstream from these reaches to evaluate seasonal and longitudinal turbidity patterns and fluctuations. The volume and mass of sediment deposited in a large pond along the Fanno Creek study reach were also estimated. Study results include: Instantaneous SSLs at the upstream reach boundaries often were greater at Bronson Creek compared to Fanno Creek during storm events. These differences were likely caused by the greater mean basin slope upstream from the Bronson Creek reach and its proximity to the headwaters in the Tualatin Mountains. In contrast, the frequency of sediment transport events was greater at the upstream boundary of the Fanno Creek study reach than at the upstream boundary of the Bronson Creek study reach, likely because Fanno Creek has a larger upstream contributing area and more frequent streamflow runoff events typical of urban streams. During water year 2017, approximately 140 metric tons (t) of sediment (11 percent of the total incoming load) were deposited in the Fanno Creek study reach, and 1,420 t of sediment (89 percent of the total incoming load) were deposited in the Bronson Creek study reach. Longitudinal reductions in turbidity were observed in both study reaches but varied among the two reaches. Turbidity reductions along the Fanno Creek study reach were associated with sediment deposition and storage in the south pond, a large floodplain pond formed by a beaver dam. Turbidity decreased gradually along the Bronson Creek study reach, indicating that sediment was deposited between the upstream and downstream boundaries. Differences in decreases in SSLs and turbidity among the two study reaches were attributed to reach characteristics, such as beaver dam characteristics, stream-floodplain hydraulic connections, and the type and density of the vegetation. The eastern part of the south pond in the Fanno Creek study reach trapped approximately 1,100 cubic meters of sediment (estimated 250 t) from 2012 to 2016 (the period between when beaver dams were first built in the reach and when topographic surveys were collected for this study). This amount is equivalent to about one seventh of the mean annual SSL moving through Fanno Creek as estimated by a previous study at the downstream U.S. Geological Survey streamgage at Fanno Creek at Durham Road (14206950). Beaver dams and ponds in urban streams can reduce SSLs and trap sediment. Consideration of reach-specific factors influencing the effects of beaver dams on sediment transport could help create realistic expectations for restoration programs about this potential benefit associated with beaver activity.

Oregon↗

Optimal hydrograph separation using a recursive digital filter constrained by chemical mass balance, with application to selected Chesapeake Bay watersheds

Quantitative estimates of base flow are necessary to address questions concerning the vulnerability and response of the Nation’s water supply to natural and human-induced change in environmental conditions. An objective of the U.S. Geological Survey National Water-Quality Assessment Project is to determine how hydrologic systems are affected by watershed characteristics, including land use, land cover, water use, climate, and natural characteristics (geology, soil type, and topography). An important component of any hydrologic system is base flow, generally described as the part of streamflow that is sustained between precipitation events, fed to stream channels by delayed (usually subsurface) pathways, and more specifically as the volumetric discharge of water, estimated at a measurement site or gage at the watershed scale, which represents groundwater that discharges directly or indirectly to stream reaches and is then routed to the measurement point. Hydrograph separation using a recursive digital filter was applied to 225 sites in the Chesapeake Bay watershed. The recursive digital filter was chosen for the following reasons: it is based in part on the assumption that groundwater acts as a linear reservoir, and so has a physical basis; it has only two adjustable parameters (alpha, obtained directly from recession analysis, and beta, the maximum value of the base-flow index that can be modeled by the filter), which can be determined objectively and with the same physical basis of groundwater reservoir linearity, or that can be optimized by applying a chemical-mass-balance constraint. Base-flow estimates from the recursive digital filter were compared with those from five other hydrograph-separation methods with respect to two metrics: the long-term average fraction of streamflow that is base flow, or base-flow index, and the fraction of days where streamflow is entirely base flow. There was generally good correlation between the methods, with some biased slightly high and some biased slightly low compared to the recursive digital filter. There were notable differences between the days at base flow estimated by the different methods, with the recursive digital filter having a smaller range of values. This was attributed to how the different methods determine cessation of quickflow (the part of streamflow which is not base flow). For 109 Chesapeake Bay watershed sites with available specific conductance data, the parameters of the filter were optimized using a chemical-mass-balance constraint and two different models for the time-dependence of base-flow specific conductance. Sixty-seven models were deemed acceptable and the results compared well with non-optimized results. There are a number of limitations to the optimal hydrograph-separation approach resulting from the assumptions implicit in the conceptual model, the mathematical model, and the approach taken to impose chemical mass balance (including tracer choice). These limitations may be evidenced by poor model results; conversely, poor model fit may provide an indication that two-component separation does not adequately describe the hydrologic system’s runoff response. The results of this study may be used to address a number of questions regarding the role of groundwater in understanding past changes in stream-water quality and forecasting possible future changes, such as the timing and magnitude of land-use and management practice effects on stream and groundwater quality. Ongoing and future modeling efforts may benefit from the estimates of base flow as calibration targets or as a means to filter chemical data to model base-flow loads and trends. Ultimately, base-flow estimation might provide the basis for future work aimed at improving the ability to quantify groundwater discharge, not only at the scale of a gaged watershed, but at the scale of individual reaches as well.

Scientific Investigations Report↗

Modeling hydrodynamics, water temperature, and water quality in the Klamath River upstream of Keno Dam, Oregon, 2006-09

A hydrodynamic, water temperature, and water-quality model was constructed for a 20-mile reach of the Klamath River downstream of Upper Klamath Lake, from Link River to Keno Dam, for calendar years 2006-09. The two-dimensional, laterally averaged model CE-QUAL-W2 was used to simulate water velocity, ice cover, water temperature, specific conductance, dissolved and suspended solids, dissolved oxygen, total nitrogen, ammonia, nitrate, total phosphorus, orthophosphate, dissolved and particulate organic matter, and three algal groups. The Link-Keno model successfully simulated the most important spatial and temporal patterns in the measured data for this 4-year time period. The model calibration process provided critical insights into water-quality processes and the nature of those inputs and processes that drive water quality in this reach. The model was used not only to reproduce and better understand water-quality conditions that occurred in 2006-09, but also to test several load-reduction scenarios that have implications for future water-resources management in the river basin. The model construction and calibration process provided results concerning water quality and transport in the Link-Keno reach of the Klamath River, ranging from interesting circulation patterns in the Lake Ewauna area to the nature and importance of organic matter and algae. These insights and results include: * Modeled segment-average water velocities ranged from near 0.0 to 3.0 ft/s in 2006 through 2009. Travel time through the model reach was about 4 days at 2,000 ft 3 /s and 12 days at 700 ft3/s flow. Flow direction was aligned with the upstream-downstream channel axis for most of the Link-Keno reach, except for Lake Ewauna. Wind effects were pronounced at Lake Ewauna during low-flow conditions, often with circulation in the form of a gyre that rotated in a clockwise direction when winds were towards the southeast and in a counterclockwise direction when winds were towards the northwest. * Water temperatures ranged from near freezing in winter to near 30 degrees C at some locations and periods in summer; seasonal water temperature patterns were similar at the inflow and outflow. Although vertical temperature stratification was not present at most times and locations, weak stratification could persist for periods up to 1-2 weeks, especially in the downstream parts of the reach. Thermal stratification was important in controlling vertical variations in water quality. * The specific conductance, and thus density, of tributaries within the reach usually was higher than that of the river itself, so that inflows tended to sink below the river surface. This was especially notable for inflows from the Klamath Straits Drain, which tended to sink to the bottom of the Klamath River at its confluence and not mix vertically for several miles downstream. * The model was able to capture most of the seasonal changes in the algal population by modeling that population with three algal groups: blue-green algae, diatoms, and other algae. The blooms of blue-green algae, consisting mostly of Aphanizomenon flos aquae that entered from Upper Klamath Lake, were dominant, dwarfing the populations of the other two algae groups in summer. A large part of the blue-green algae population that entered this reach from upstream tended to settle out, die, and decompose, especially in the upper part of the Link-Keno reach. Diatoms reached a maximum in spring and other algae in midsummer. * Organic matter, occurring in both dissolved and particulate forms, was critical to the water quality of this reach of the Klamath River, and was strongly tied to nutrient and dissolved-oxygen dynamics. Dissolved and particulate organic matter were subdivided into labile (quickly decaying) and refractory (slowing decaying) groups for modeling purposes. The particulate matter in summer, consisting largely of dead blue-green algae, decayed quickly. Consequently, this particulate matt

Oregon↗

Sediment classification and the characterization, identification, and mapping of geologic substrates for the glaciated Gulf of Maine seabed and other terrains, providing a physical framework for ecological research and seabed management

A geologic substrate is a surface (or volume) of sediment or rock where physical, chemical, and biological processes occur, such as the movement and deposition of sediment, the formation of bedforms, and the attachment, burrowing, feeding, reproduction, and sheltering of organisms. Seabed mapping surveys in the Stellwagen Bank region off Boston, Massachusetts, from 1993 to 2004 have led to the development of a methodology for characterizing, identifying, and mapping geologic substrates. The resulting high-resolution interpretive maps (1:25,000) show the distribution of substrates in a glaciated terrain of banks and basins in water depths of 30 to 185 meters. Data sources used to characterize substrates are multibeam sonar bathymetric and backscatter imagery to document seabed topography and patterns of sediment and rock distribution, grain-size analyses of sediment samples to determine substrate composition, and video and photographic imagery of the seabed to aid in the interpretation of multibeam sonar imagery and to provide information on substrate layering and mobility, seabed structures, and sediments and nonsediment materials that cannot be physically sampled. Sediment composition is a major property of many seabed substrates. Sediment grains belong to a continuum of grain-diameter sizes previously classified into grades (for example, fine sand, medium sand) and into aggregates (mud, sand, gravel). The definition of grade and aggregate boundaries in a classification is arbitrary, and a useful classification is limited to as few classes as are needed to effectively organize and apply information. For the purpose of mapping substrates, sediment grades and aggregates were simplified and re-classified into eight composite grades based on grain-size content, mode of transport, and ecological role. Five composite grades are identified using grain-size analysis and three are identified using video and photographic imagery of the seabed. Naturally occurring sediments contain various amounts of the aggregates mud, sand, and gravel. The separation of naturally occurring sediments into sediment classes, based on grain-size analysis, requires that limits be set on the amount of mud, sand, and gravel each class contains. Fifteen previously identified basic sediment classes provided interpretive information on sediment transport by emphasizing gravel content (a low 0.01-weight-percent threshold) and on winnowing processes based on the sand-to-mud ratio. The present study recognizes 20 basic sediment classes that are combinations of aggregates in which the lower limits for recognition of mud and sand are 10 weight percent and of gravel, 25 weight percent. These sediment classes can be made more specific by listing their content of the composite grades fine-grained sand (3 and 4 phi), which is transported in suspension, and coarse-grained sand (0, 1, and 2 phi), which is transported as bedload. Additional sediment classes and nonsediment classes that cannot be sampled are recognized on the basis of visual analysis of seabed video and photographic imagery and include pebble, cobble, and boulder gravel, rock outcrops, and shell beds, among others. Substrates are not classified because their properties are too varied for a classification to be concise and useful. Rather, substrates are characterized and identified by sediment grain-size composition (the sediment class); the distribution, in millimeters, of grain diameters in the sediment; the presence of nonsediments (for example, rock outcrops); substrate mobility based on the presence of sediment ripples; substrate layering (for example, a partial veneer of sand on gravel); and seabed structures. These properties have interpretive value by providing information about sedimentary processes acting on a substrate and about its ecological function. A geologic substrate, when it is associated with one or more species, is an important element of a habitat. This methodology was developed to map a glaciated terrain characterized by geologic substrates that typify a wide range of erosional and depositional sedimentary environments, and it likely will be useful for mapping substrates in other terrains. Substrate maps provide the physical framework required for identifying sediment transport processes, validating sediment transport models, studying the ecology of species and communities, and managing marine resources and seabed usage.

Massachusetts↗

Stormwater quality of infrastructure elements in Rapid City, South Dakota, 2016–18

As runoff flows over the land or impervious surfaces (paved streets, parking lots, and building roofs), it accumulates debris, chemicals, sediment, and other contaminants that can adversely affect water quality if the runoff discharge remains untreated. Pathogens, commonly measured using fecal indicator bacteria such as Escherichia coli , enterococci, or fecal coliform, are the most-frequent cause of water-quality impairment in rivers and streams in the United States. Rapid Creek originates in the western Black Hills area and flows east through Rapid City, South Dakota, to its mouth at the Cheyenne River. The water quality of Rapid Creek is important because the reach that flows through Rapid City is a valuable spawning area for a self-sustaining trout fishery, is actively used for recreation, and is a seasonal municipal water supply for the City of Rapid City. These uses (fishery, recreation, and water supply) are considered beneficial uses by the South Dakota Department of Environment and Natural Resources. Numerical criteria have been established for total suspended solids and Escherichia coli concentrations, among other water-quality constituents, for these beneficial uses. The objectives of this study were to improve the method by which fecal indicator bacteria and total suspended solids are quantified in the urban drainages within Rapid City and to provide information that helps identify origins of fecal indicator bacteria and total suspended solids. This information can be used in hydrologic models to estimate fecal indicator bacteria and total suspended solid loading from certain infrastructure elements in urban environments. Stormwater samples analyzed for Escherichia coli , total suspended solids, specific conductance, and pH were collected in three drainage basin flowpaths within Rapid City: Jackson, Wildwood, and the Eco Prayer Park. Data-collection activities for this study focused on upgradient urban flowpath elements during rainfall events. This approach builds upon previous stormwater assessments that characterized the water quality in urban basin outlets near the downstream end of the stormwater flowpaths. Within each flowpath group, 4–6 sites were selected to represent the various infrastructure elements of the runoff process. These elements included roof downspouts, parking lots, street curbs and gutters, open channels, underground storm sewers, and stormwater ponds or best-management practice facilities. In general, the concentrations of Escherichia coli and total suspended solids increased in the downstream direction for all flowpath sites. The wash-off process after the first flush is evident for total suspended solids and specific conductance; however, Escherichia coli concentrations did not necessarily follow the same pattern. Escherichia coli concentrations in the latter part of the runoff period were similar to or greater than the initial concentrations of the first set of samples. Stormwater-quality data were summarized by infrastructure type (roof downspout, parking lot, street curb, and channel/storm sewer) to provide information about approximate water-quality concentrations originating at the upper end of urban flowpaths. Escherichia coli and total suspended solid concentrations were lowest in samples collected from locations most isolated from human influence (roof downspouts); the median concentrations at these sites were 4 most probable number per 100 milliliters and 15 milligrams per liter, respectively. The delivery potential of fecal indicator bacteria and sediment from parking lots and street curbs was similar; median concentrations of Escherichia coli and total suspended solids were around 150–220 most probable number per 100 milliliters and 56–86 milligrams per liter, respectively. The downstream receiving channels and storm sewers where stormwater was aggregated typically contained the highest Escherichia coli concentrations (median was 1,800 most probable number per 100 milliliters), but the total suspended solid concentrations were similar to upstream elements in the flowpath (median was 69 milligrams per liter). The data collected from this study demonstrate that stormwater is contaminated with fecal indicator bacteria upon initial contact with impervious surfaces and highlight the importance of controlling the volume of stormwater discharges into receiving waterbodies via storage structures and pervious elements. Diluting stormwater with high concentrations of Escherichia coli with the receiving water’s (Rapid Creek) lower concentration of Escherichia coli is likely the primary mechanism for meeting the beneficial-use criterion threshold of 235 most probable number per 100 milliliters. Although total suspended solid concentrations in the upper parts of the basin (parking lots and street curbs) also begin at concentrations (56 to 86 milligrams per liter) above the beneficial-use criterion for Rapid Creek (53 milligrams per liter), current stormwater-control practices (storage ponds, swales, and wetlands) may be able to reduce suspended-sediment concentrations to meet this threshold.

South Dakota↗

Design and analysis of a natural-gradient ground-water tracer test in a freshwater tidal wetland, West Branch Canal Creek, Aberdeen Proving Ground, Maryland

A natural-gradient ground-water tracer test was designed and conducted in a tidal freshwater wetland at West Branch Canal Creek, Aberdeen Proving Ground, Maryland. The objectives of the test were to characterize solute transport at the site, obtain data to more accurately determine the ground-water velocity in the upper wetland sediments, and to compare a conservative, ionic tracer (bromide) to a volatile tracer (sulfur hexafluoride) to ascertain whether volatilization could be an important process in attenuating volatile organic compounds in the ground water. The tracer test was conducted within the upper peat unit of a layer of wetland sediments that also includes a lower clayey unit; the combined layer overlies an aquifer. The area selected for the test was thought to have an above-average rate of ground-water discharge based on ground-water head distributions and near-surface detections of volatile organic compounds measured in previous studies. Because ground-water velocities in the wetland sediments were expected to be slow compared to the underlying aquifer, the test was designed to be conducted on a small scale. Ninety-seven ?-inch-diameter inverted-screen stainless-steel piezometers were installed in a cylindrical array within approximately 25 cubic feet (2.3 cubic meters) of wetland sediments, in an area with a vertically upward hydraulic gradient. Fluorescein dye was used to qualitatively evaluate the hydrologic integrity of the tracer array before the start of the tracer test, including verifying the absence of hydraulic short-circuiting due to nonnatural vertical conduits potentially created during piezometer installation. Bromide and sulfur hexafluoride tracers (0.139 liter of solution containing 100,000 milligrams per liter of bromide ion and 23.3 milligrams per liter of sulfur hexafluoride) were co-injected and monitored to generate a dataset that could be used to evaluate solute transport in three dimensions. Piezometers were sampled 2 to 15 times each, from July 1998 through September 1999, to assess background conditions and monitor tracer movement. During the test, 644 samples were analyzed for fluorescein, 617 samples were analyzed for bromide with an ion-selective electrode, 213 samples were analyzed for bromide with colorimetric methods, and 603 samples were analyzed for sulfur hexafluoride, including samples collected prior to tracer injection to determine background concentrations. Additional samples were analyzed for volatile organic compounds (96 samples) and methane (37 samples) to determine the distribution of these contaminants and the extent of methanogenic conditions within the tracer array; however, these data were not used for the analysis of the test. During the tracer test, the fluorescein dye, bromide, and sulfur hexafluoride were transported predominantly in the upward direction, although all three tracers also moved outward in all directions from the injection point, and it is likely that some tracer mass moved beyond the lateral edges of the array. An analysis of the tracer-test data was performed through the use of breakthrough curves and isoconcentration contour plots. Results show that movement of the fluorescein dye, a non-conservative tracer, was retarded compared to the other two tracers, likely as a result of sorption onto the wetland sediments. Suspected loss of tracer mass along the lateral edges of the array prevented a straightforward quantitative analysis of tracer transport and ground-water velocity from the bromide and sulfur-hexafluoride data. In addition, the initial density of the bromide/sulfur hexafluoride solution (calculated to be 1.097 grams per milli2 Ground-Water Tracer Test, West Branch Canal Creek, Aberdeen Proving Ground, MD liter) could have caused the solution to sink below the injection point before undergoing dilution and moving back up into the array. For these reasons, the data analysis in this report was performed largely through qualitative method

Scientific Investigations Report↗

Water-quality characteristics, including sodium-adsorption ratios, for four sites in the Powder River drainage basin, Wyoming and Montana, water years 2001-2004

The U.S. Geological Survey, in cooperation with the Wyoming Department of Environmental Quality, monitors streams throughout the Powder River structural basin in Wyoming and parts of Montana for potential effects of coalbed natural gas development. Specific conductance and sodium-adsorption ratios may be larger in coalbed waters than in stream waters that may receive the discharge waters. Therefore, continuous water-quality instruments for specific conductance were installed and discrete water-quality samples were collected to characterize water quality during water years 2001-2004 at four sites in the Powder River drainage basin: Powder River at Sussex, Wyoming; Crazy Woman Creek near Arvada, Wyoming; Clear Creek near Arvada, Wyoming; and Powder River at Moorhead, Montana. During water years 2001-2004, the median specific conductance of 2,270 microsiemens per centimeter at 25 degrees Celsius (?S/cm) in discrete samples from the Powder River at Sussex, Wyoming, was larger than the median specific conductance of 1,930 ?S/cm in discrete samples collected downstream from the Powder River at Moorhead, Montana. The median specific conductance was smallest in discrete samples from Clear Creek (1,180 ?S/cm), which has a dilution effect on the specific conductance for the Powder River at Moorhead, Montana. The daily mean specific conductance from continuous water-quality instruments during the irrigation season showed the same spatial pattern as specific conductance values for the discrete samples. Dissolved sodium, sodium-adsorption ratios, and dissolved solids generally showed the same spatial pattern as specific conductance. The largest median sodium concentration (274 milligrams per liter) and the largest range of sodium-adsorption ratios (3.7 to 21) were measured in discrete samples from the Powder River at Sussex, Wyoming. Median concentrations of sodium and sodium-adsorption ratios were substantially smaller in Crazy Woman Creek and Clear Creek, which tend to decrease sodium concentrations and sodium-adsorption ratios at the Powder River at Moorhead, Montana. Dissolved-solids concentrations in discrete samples were closely correlated with specific conductance values; Pearson's correlation coefficients were 0.98 or greater for all four sites. Regression equations for discrete values of specific conductance and sodium-adsorption ratios were statistically significant (p-values <0.001) at all four sites. The strongest relation (R2=0.92) was at the Powder River at Sussex, Wyoming. Relations on Crazy Woman Creek (R2=0.91) and Clear Creek (R2=0.83) also were strong. The relation between specific conductance and sodium-adsorption ratios was weakest (R2=0.65) at the Powder River at Moorhead, Montana; however, the relation was still significant. These data indicate that values of specific conductance are useful for estimating sodium-adsorption ratios. A regression model called LOADEST was used to estimate dissolved-solids loads for the four sites. The average daily mean dissolved-solids loads varied among the sites during water year 2004. The largest average daily mean dissolved-solids load was calculated for the Powder River at Moorhead, Montana. Although the smallest concentrations of dissolved solids were in samples from Clear Creek, the smallest average daily mean dissolved-solids load was calculated for Crazy Woman Creek. The largest loads occurred during spring runoff, and the smallest loads occurred in late summer, when streamflows typically were smallest. Dissolved-solids loads may be smaller than average during water years 2001-2004 because of smaller than average streamflow as a result of drought conditions.

Scientific Investigations Report↗

Evaluation of restoration alternatives using hydraulic models of lake outflow at Wapato Lake National Wildlife Refuge, northwestern Oregon

Wapato Lake National Wildlife Refuge near the city of Gaston in northwestern Oregon was established in 2013, and planning is underway to restore a more natural lake and wetland system after more than 100 years of agricultural activity on the lakebed. Several water-management and restoration alternatives are under consideration, one of which involves opening and reconnecting Wapato Lake’s outlet to allow flow in and out of the lake to Wapato Creek and downstream to the Tualatin River. The effects of this and other alternatives are being evaluated, partly through a detailed examination of the lake’s water budget. The water budget for the lake during 2011–13 was quantified by the U.S. Geological Survey in partnership with U.S. Fish and Wildlife Service and others. Results were incorporated in a spreadsheet-based Water Management Scenario Tool (WMST) for Wapato Lake, which predicts the effects of various management actions on daily lake level and potential habitat areas for waterfowl or other target species. Incorporating the effects of a hypothetical open outlet between the lake and the downstream river network in the WMST was accomplished by using a hydraulic model to simulate the flow-exchange rate between Wapato Lake and Wapato Creek over a wide range of lake levels and downstream river conditions. A Hydraulic Engineering Center-River Analysis System (HEC-RAS) one-dimensional unsteady flow model was constructed and calibrated for Wapato Creek and part of the Tualatin River using data from October 2011 to April 2013, and then was used to simulate daily lake/creek exchange flows in water years 1992–2014 under hypothetically constant lake levels. Results were used to populate a table of lake/creek flow-exchange rates for use in the WMST; a dynamic link between the WMST and HEC-RAS was unrealistic because it would require hundreds of calls to HEC-RAS and result in long run times for a single water-year’s WMST calculations with daily time steps. Predictions of daily outlet flows from the WMST were checked against HEC-RAS simulated flows under daily varying lake levels to ensure that the timing and magnitude of lake/creek exchange flows used by the WMST were consistent with those of the hydraulic model. Two scenarios were tested with a hypothetical open lake outlet to show how the WMST could be used to inform restoration planning—one scenario used a year-round open lake outlet, and the other scenario closed that outlet for part of the high-water winter season. Results showed that flows in and out of a year-round open lake outlet would dominate the lake’s water budget and produce water depths during winter and through mid-summer that might be too deep to support waterbird species that require shallow water. Closing the lake outlet during large winter storms and high-water conditions in the downstream river network would isolate the lake from surrounding rivers, keep the lake level lower, and retain substantially more shallow-water areas. Because of the ease with which management alternatives can be evaluated, a water-budget spreadsheet tool such as the WMST has been a valuable part of an analysis of potential water-management and restoration alternatives for Wapato Lake National Wildlife Refuge.

Oregon↗

Simulation of Surface-Water Conditions in the Nontidal Passaic River Basin, New Jersey

The Passaic River Basin, the third largest drainage basin in New Jersey, encompasses 950 mi2 (square miles) in the highly urbanized area outside New York City, with a population of 2 million. Water quality in the basin is affected by many natural and anthropogenic factors. Nutrient loading to the Wanaque Reservoir in the northern part of the basin is of particular concern and is caused partly by the diversion of water at two downstream intakes that is transferred back upstream to refill the reservoir. The larger of these diversions, Wanaque South intake, is on the lower Pompton River near Two Bridges, New Jersey. To support the development of a Total Maximum Daily Load (TMDL) for nutrients in the nontidal part of the basin (805 mi2), a water-quality transport model was needed. The U.S. Geological Survey, in cooperation with the New Jersey Department of Environmental Protection and New Jersey EcoComplex, developed a flow-routing model to provide the hydraulic inputs to the water-quality model. The Diffusion Analogy Flow model (DAFLOW) described herein was designed for integration with the Water Quality Analysis Simulation Program (WASP) watershed water-quality model. The flow routing model was used to simulate flow in 108 miles of the Passaic River and major tributaries. Flow data from U.S. Geological Survey streamflow-gaging stations represent most of the model's upstream boundaries. Other model inputs include estimated flows for ungaged tributaries and unchanneled drainage along the mainstem, and reported flows for major point-source discharges and diversions. The former flows were calibrated using the drainage-area ratio method. The simulation extended over a 4+ year period representing a range in flow conditions. Simulated channel cross-sectional geometry in the DAFLOW model was calibrated using several different approaches by adjusting area and top width parameters. The model also was calibrated to observed flows for water year 2001 (low flow) at five mainstem gaging stations and one station at which flow was estimated. The model's target range was medium to low flows--the range of typical intake operations. Simulated flow mass balance, hydrographs (flood-wave speed, attenuation, and spread), flow-duration curves, and velocity and depth values were compared to observed counterparts. Mass balance and hydrograph fit were evaluated quantitatively. Simulation results generally were within the accuracy of the flow data at the measurement stations. The model was validated to observed flows for water years 2000 (average flow), 2002 (extreme low flow), and 2003 (high flow). Results for 19 of 20 comparisons indicate average mass-balance and model-fit errors of 6.6 and 15.7 percent, respectively, indicating that the model reasonably represents the time variation of streamflow in the nontidal Passaic River Basin. An algorithm (subroutine) also was developed for DAFLOW to simulate the hydraulic mixing that occurs near the Wanaque South intake upstream from the confluence of the Pompton and Passaic Rivers. The intake draws water from multiple sources, including effluent from a nearby wastewater-treatment plant, all of which have different phosphorus loads. The algorithm determines the proportion of flow from each source and operates within a narrow flow range. The equations used in the algorithm are based on the theory of diffusion and lateral mixing in rivers. Parameters used in the equations were estimated from limited available local flow and water-quality data. As expected, simulation results for water years 2000, 2001, and 2003 indicate that most of the water drawn to the intake comes from the Pompton River; however, during many short periods of low flow and high diversion, particularly in water year 2002, entrainment of the other flow sources compensated for the insufficient flow in the Pompton River. As additional verification of the flow model used in the water-quality model, a Branched Lagrangian Transport Model (B

Scientific Investigations Report↗

Hydrologic response in karstic-ridge wetlands to rainfall and evapotranspiration, central Florida, 2001-2003

Two internally drained karstic wetlands in central Florida-Boggy Marsh at the Hilochee Wildlife Management Area and a large unnamed wetland at the Lyonia Preserve-were studied during 2001-03 to gain a better understanding of the net-recharge function that these wetlands provide, the significance of exchanges with ground water with regard to wetland water budgets, and the variability in wetland hydrologic response to a range of climate conditions. These natural, relatively remote and unaltered wetlands were selected to provide a baseline of natural wetland hydrologic variability to which anthropogenic influences on wetland hydrology could be compared. Large departures from normal rainfall during the study were fortuitous, and allowed monitoring of hydrologic processes over a wide range of climate conditions. Wetland responses varied greatly as a result of climate conditions that ranged from moderate drought to extremely moist. Anthropogenic activities influenced water levels at both study sites; however, because these activities were brief relative to the duration of the study, sufficient data were collected during unimpacted periods to allow for the following conclusions to be made. Water budgets developed for Boggy Marsh and the Lyonia large wetland showed strong similarity between the flux terms of rainfall, evaporation, net change in storage, and the net ground-water exchange residual. Runoff was assumed to be negligible. Of the total annual flux at Boggy Marsh, rainfall accounted for 45 percent; evaporation accounted for 25 percent; net change in storage accounted for 25 percent; and the net residual accounted for 5 percent. At the Lyonia large wetland, rainfall accounted for 44 percent; evaporation accounted for 29 percent; net change in storage accounted for 21 percent; and the net residual accounted for 6 percent of the total annual flux. Wetland storage and ground-water exchange were important when compared to the total water budget at both wetlands. Even though rainfall was far above average during the study, wetland evaporation volumetrically exceeded rainfall. Ground-water inflow was effective in partially offsetting the negative residual between rainfall and evaporation, thus adding to wetland storage. Ground-water inflow was most common at both wetlands when rainfall continued for days or weeks, or during a week with more than about 2.5 inches of rainfall. Large decreases in wetland storage were associated with large negative fluxes of evaporation and ground-water exchange. The response of wetland water levels to rainfall showed a strong and similar relation at both study sites; however, the greater variability in the relation of wetland water-level change to rainfall at higher rainfall rates indicated that hydrologic processes other than rainfall became more important in the response of the wetland. Changes in wetland water levels seemed to be related more to vertical gradients than to lateral gradients. The largest wetland water-level rises were associated mostly with lower vertical gradients, when vertical head differences were below the 18-month average; however, at the Lyonia large wetland, extremely large lateral gradients toward the wetland during late June 2002 may have contributed to substantial gains in wetland water. During the remainder of the study, wetland water-level rises were associated mostly with decreasing vertical gradients and highly variable lateral gradients. Conversely, wetland water-level decreases were associated mostly with increasing vertical gradients and lateral gradients away from the wetland, particularly during the dry season. The potential for lateral ground-water exchange with the wetlands varied substantially more than that for vertical exchange. Potential for vertical losses of wetland water to ground water was highest during a dry period from December 2001 to June 2002, during the wet season of 2002, and for several months into the following dry season. Lateral he

Scientific Investigations Report↗

Preliminary geochemical assessment of water in selected streams, springs, and caves in the Upper Baker and Snake Creek drainages in Great Basin National Park, Nevada, 2009

Water in caves, discharging from springs, and flowing in streams in the upper Baker and Snake Creek drainages are important natural resources in Great Basin National Park, Nevada. Water and rock samples were collected from 15 sites during February 2009 as part of a series of investigations evaluating the potential for water resource depletion in the park resulting from the current and proposed groundwater withdrawals. This report summarizes general geochemical characteristics of water samples collected from the upper Baker and Snake Creek drainages for eventual use in evaluating possible hydrologic connections between the streams and selected caves and springs discharging in limestone terrain within each watershed. Generally, water discharging from selected springs in the upper Baker and Snake Creek watersheds is relatively young and, in some cases, has similar chemical characteristics to water collected from associated streams. In the upper Baker Creek drainage, geochemical data suggest possible hydrologic connections between Baker Creek and selected springs and caves along it. The analytical results for water samples collected from Wheelers Deep and Model Caves show characteristics similar to those from Baker Creek, suggesting a hydrologic connection between the creek and caves, a finding previously documented by other researchers. Generally, geochemical evidence does not support a connection between water flowing in Pole Canyon Creek to that in Model Cave, at least not to any appreciable extent. The water sample collected from Rosethorn Spring had relatively high concentrations of many of the constituents sampled as part of this study. This finding was expected as the water from the spring travelled through alluvium prior to being discharged at the surface and, as a result, was provided the opportunity to interact with soil minerals with which it came into contact. Isotopic evidence does not preclude a connection between Baker Creek and the water discharging from Rosethorn Spring. The residence time of water discharging into the caves and from selected springs sampled as part of this study ranged from 10 to 25 years. Within the upper Snake Creek drainage, the results of this study show geochemical similarities between Snake Creek and Outhouse Spring, Spring Creek Spring, and Squirrel Spring Cave. The strontium isotope ratio ( 87 Sr/ 86 Sr) for intrusive rock samples representative of the Snake Creek drainage were similar to carbonate rock samples. The water sample collected from Snake Creek at the pipeline discharge point had lower strontium concentrations than the sample downstream and a similar 87 Sr/ 86 Sr value as the carbonate and intrusive rocks. The chemistry of the water sample was considered representative of upstream conditions in Snake Creek and indicates minimal influence of rock dissolution. The results of this study suggest that water discharging from Outlet Spring is not hydrologically connected to Snake Creek but rather is recharged at high altitude(s) within the Snake Creek drainage. These findings for Outlet Spring largely stem from the relatively high specific conductance and chloride concentration, the lightest deuterium (δD) and oxygen-18 (δ 18 O) values, and the longest calculated residence time (60 to 90 years) relative to any other sample collected as part of this study. With the exception of water sampled from Outlet Spring, the residence time of water discharging into Squirrel Spring Cave and selected springs in the upper Snake Creek drainage was less than 30 years.

Nevada↗

Assessing spatial variability of nutrients, phytoplankton, and related water-quality constituents in the California Sacramento–San Joaquin Delta at the landscape scale—2018 high resolution mapping surveys

Executive Summary This study examined the abundance and distribution of nutrients and phytoplankton in the tidal aquatic environments of the Sacramento–San Joaquin Delta (Delta) and Suisun Bay, comprising three spatial surveys conducted in May, July, and October of 2018 that used continuous underway high frequency sampling and measurements onboard a high-speed boat to characterize spatial variation across the extent of the Delta. The method used involves simultaneously collecting information about the concentration and spatial distribution of all major nutrient forms with analogous information about the major classes of phytoplankton and associated water-quality conditions. The results showed substantial variation across space and time, providing an unprecedented snapshot of the dynamic environmental processes that shape the ways nutrients interact with and affect aquatic habitats in the Delta. The purposes of this study were to improve our understanding of how hydrodynamics, landscape features, and aquatic primary productivity interact to drive nutrient cycling and transport in the Delta and to provide insights into the underlying processes most directly responsible for the conditions at the time of this study, and thus into the range of conditions that may be expected following the wide array of prospective future changes to the Delta. One major anticipated change at the time of this study was the planned upgrade to the Sacramento Regional Wastewater Treatment Plant, but the study also informs our understanding of potential effects from other changes to the Delta, such as those caused by other nutrient-management actions, flow actions, large-scale wetland restoration, drought, flood, levee failure, and changes to water management. Nutrient loading is the primary driver of nutrient concentrations in the Delta, but several other major drivers interact to shape their distribution and effects: geomorphology, hydrodynamics, landscape features, and aquatic productivity. Hydrodynamics affect timescales of transport and dilution of nutrient loads in the Delta. During transit through the system, channel geometry, tidal mixing, and water exports affect hydrodynamics in diverse ways that influence water-residence and transport times, thereby markedly affecting the range of times during which natural internal cycling can alter nutrient concentrations and forms. Channel geometry and location shape tidal energy and river currents into these observed dynamics. Interactions with Delta aquatic landscapes such as herbaceous tidal marsh, submerged aquatic vegetation, and large expanses of intertidal or subtidal sediments (all highly productive landscapes) exert demand on available nutrient supplies but can also simultaneously transform and generate nutrients. Finally, while phytoplankton require nutrients to sustain production and thus are a potential nutrient sink, the amount and form of nutrients also can influence the occurrence of harmful algal blooms (HABs) that adversely affect aquatic organisms as well as affect the occurrence of beneficial algal blooms that result in production of algae that are favorable for imperiled Delta pelagic aquatic food webs. The surveys revealed a complex mosaic of spatial variation, with nutrient concentrations varying from near zero to well above concentrations considered eutrophic; nutrient concentrations were more often related to the extent of hydrologic transport and mixing than to specific geographic locations or to specific landscape features. Similarly, the surveys identified phytoplankton abundance ranging from near detection to the level of large phytoplankton blooms, with large variation in phytoplankton community composition. Although the study occurred during a period of low bloom activity, phytoplankton productivity appeared to be the strongest potential sink for inorganic nutrients in the Delta, indicating that it is a larger control on nutrient concentrations and distribution than previously understood. Cycling and transformation within the water column only appeared to substantially lower total nutrient concentrations at the longest estimated transport timescales. Contrary to expectations, we did not observe substantial nutrient depletion near landscape-scale features such as open-water habitats, submerged aquatic vegetation beds, extensive wetlands, or exposed sediments, indicating that these habitat types did not act as major sinks for nutrients in the Delta during these surveys. These results indicated that nutrient reduction efforts may have the greatest effect on pelagic phytoplankton productivity in the more productive reaches of the Delta and estuary, but these effects are unlikely to be magnified by changes to nutrient loss within the Delta over conceivable changes in flow conditions, Delta water management actions, or large-scale wetland restoration activities. Nevertheless, local processes were shown to cause substantial loss, and thus integrating of nutrient effects with other indicators of aquatic habitat conditions will help inform planning future actions at specific sites. Finally, we note that the primary contribution of this study was intended to be the survey data themselves. Aside from the results highlighted in this report, the surveys are a benchmark against which future environmental change may be evaluated, including changes to nutrient management or water exports, drought, large-scale wetland restoration, and climate change. Further, although we highlight some of the main findings from the surveys in this report, the necessarily limited scope precludes examination of many topics for which these surveys may be highly informative. To facilitate the utility of these data to stakeholders, managers, and researchers, we have released the data online (Bergamaschi and others, 2020) and created an online data exploration portal ( https:​//ca.water​.usgs.gov/​bay-​delta/​2018-​delta-​wide-​mapping-​surveys.html ) where users may query the surveys in a variety of ways to test hypotheses, examine relationships, assess spatial trends, and download data. The data exploration portal is intended to be an immersive experience that allows users to gain greater understanding of the complex interactions that shape Delta aquatic environments. This report is intended as a companion to the portal, allowing the reader to challenge and further explore the highlighted findings. This study was a collaboration between the U.S. Geological Survey and the Delta Regional Monitoring Program, with additional funding provided from U.S. Geological Survey Cooperative Matching Funds Program.

California↗

Temporal Differences in the Hydrologic Regime of the Lower Platte River, Nebraska, 1895-2006

In cooperation with the Lower Platte South Natural Resources District for a collaborative study of the cumulative effects of water and channel management practices on stream and riparian ecology, the U.S. Geological Survey (USGS) compiled, analyzed, and summarized hydrologic information from long-term gaging stations on the lower Platte River to determine any significant temporal differences among six discrete periods during 1895-2006 and to interpret any significant changes in relation to changes in climatic conditions or other factors. A subset of 171 examined hydrologic indices (HIs) were selected for use as indices that (1) included most of the variance in the larger set of indices, (2) retained utility as indicators of the streamflow regime, and (3) provided information at spatial and temporal scale(s) that were most indicative of streamflow regime(s). The study included the most downstream station within the central Platte River segment that flowed to the confluence with the Loup River and all four active streamflow-gaging stations (2006) on the lower Platte River main stem extending from the confluence of the Loup River and Platte River to the confluence of the Platte River and Missouri River south of Omaha. The drainage areas of the five streamflow-gaging stations covered four (of eight) climate divisions in Nebraska?division 2 (north central), 3 (northeast), 5 (central), and 6 (east central). Historical climate data and daily streamflow records from 1895 through 2006 at the five streamflow-gaging stations were divided into six 11-water-year periods: 1895?1905, 1934?44, 1951?61, 1966?76, 1985?95, and 1996?2006. Analysis of monthly climate variables?precipitation and Palmer Hydrological Drought Index?was used to determine the degree of hydroclimatic association between streamflow and climate. Except for the 1895?1905 period, data gaps in the streamflow record were filled by data estimation techniques, and 171 hydrologic indices were calculated using the Hydroecological Integrity Assessment Process software developed by the U.S. Geological Survey. A subset of 27 nonredundant indices (of the 171 indices) was selected using principal component analysis. Indices that described monthly streamflow?mean, maximum, minimum, skewness, and coefficients of variation?also were used. Comparison of these selected indices allowed determination of temporal differences among the six 11-water-year periods for each gaging station. The lower Platte River basin was affected by moderate to severe drought conditions in the 1934?44 period. The widespread drought was preceded by mildly to moderately wet conditions in the 1895?1906 period, followed by incipient drought to incipiently wet conditions in the 1951?61 periods and mildly wet conditions in 1966?76 period, moderately wet conditions in the 1985?1995 period, and incipient drought to mildly wet conditions in the 1996?2006 period. Monthly streamflow of the Platte River from Duncan through Louisville, Nebraska, correlated significantly with the monthly Palmer Hydrological Drought Index. Temporal differences in median values of monthly-mean and monthly-maximum streamflow measured at Duncan, North Bend, and Ashland stations between the two moderately wet periods (1895?1905 and 1985?95) indicated that streamflow storage reservoirs and regulation some time after 1906 significantly reduced monthly streamflow magnitude and amplitude?the difference between the highest and lowest median values of monthly mean streamflow. Effects of storage reservoirs on the median values of monthly-minimum streamflow were less obvious. Temporal differences among the other five periods, from 1934 through 2006 when streamflow was affected by storage and regulation, indicated the predominant effects of contrasting climate conditions on median values of monthly mean, maximum, and minimum streamflow. Significant temporal differences in monthly streamflow values were evident mainly between the two periods of greatly

Scientific Investigations Report↗