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At least 1,081 records · Page 60Linked to original sources
USGS2006

Ecology of bonytail and razorback sucker and the role of off-channel habitats in their recovery

The bonytail and razorback sucker are two of four endangered mainstem fishes found in the Colorado River. Unlike the Colorado pikeminnow and humpback chub, wild populations of the bonytail and razorback sucker are either extirpated from the mainstem river or are nearly so. Agencies are aggressively stocking these fish and while repatriated fish spawn, their young are rapidly eaten by introduced predators. A decade of predator removal efforts has proved ineffective in restoring natural recruitment. Today, the presence of these species is totally dependent on stocking, suggesting both species are worse off today than when recovery efforts began nearly two decades ago. In contrast, both species readily produce young in ponds where nonnative predators are absent. Evidence shows they evolved with the ability to spawn in both flowing and standing water, which suggests isolated oxbow communities may have been an essential feature in their evolution and survival strategy. Sustainable populations during the past few decades have only occurred in isolated ponds devoid of predatory nonnative fish. Efforts to force recovery in the main channel river continue to fail due to the presence of nonnative predators that may be economically important recreational species. Off-channel sanctuaries provide research and management opportunities on a scale that are both biologically and economically realistic. Effective management of these species in small habitats appears to be the most logical approach to advance recovery in larger river reaches. This report presents new findings, updates existing information, and describes what may well represent the only practical approach to these species’ conservation and recovery. Chapter 1 provides an overview of the Colorado River system from its origin to the Gulf of California and includes a description of propagation and stocking programs which have not been described elsewhere. The report also updates what is known or suspected on the life history and ecology of these two endangered fishes. Chapter 2 describes the successful recruitment of both species at an oxbow pond on the Cibola National Wildlife Refuge in Arizona, discusses factors that contribute to completion of the life cycle of both fishes, and provides recommendations for future management of the impoundment. Chapter 3 provides historical evidence that oxbow habitats were formed historically in years of high runoff and the importance of these habitats for survival and evolution of native fishes. It also summarizes key features of habitats that can serve as sanctuaries that enhance early survival of the endangered fishes and allow the fish to complete their entire life cycles.

Scientific Investigations Report↗
USGS2006

Biomonitoring of Environmental Status and Trends (BEST) Program: Environmental contaminants, health indicators, and reproductive biomarkers in fish from the Colorado River basin

Seven fish species were collected from 14 sites on rivers in the Colorado River Basin (CDRB) from August to October 2003. Spatial trends in the concentrations of accumulative contaminants were documented and contaminant effects on the fish were assessed. Sites were located on the mainstem of the Colorado River and on the Yampa, Green, Gunnison, San Juan, and Gila Rivers. Common carp (Cyprinus carpio), black bass (Micropterus sp.), and channel catfish (Ictalurus punctatus) were the targeted species. Fish were field-examined for external and internal anomalies, selected organs were weighed to compute somatic indices, and tissue and fluid samples were preserved for fish health and reproductive biomarker analyses. Composite samples of whole fish, grouped by species and gender, from each site were analyzed for organochlorine and elemental contaminants using performance-based and instrumental methods. 2,3,7,8-tetrachlorodibenzo-p-dioxin-like activity (TCDD-EQ) was measured using the H4IIE rat hepatoma cell bioassay. Selenium (Se) and mercury (Hg) concentrations were elevated throughout the CDRB, and pesticides concentrations were greatest in fish from agricultural areas in the Lower Colorado River and Gila River. Selenium concentrations exceeded toxicity thresholds for fish (>1.0 ?g/g ww) at all sites except from the Gila River at Hayden, Arizona. Mercury concentrations were elevated (>0.1 ?g/g ww) in fish from the Yampa River at Lay, Colorado; the Green River at Ouray National Wildlife Refuge (NWR), Utah and San Rafael, Utah; the San Juan River at Hogback Diversion, New Mexico; and the Colorado River at Gold Bar Canyon, Utah, Needles, California, and Imperial Dam, Arizona. Concentrations of p,p'-DDE were relatively high in fish from Arlington, Arizona (>1.0 ?g/g ww) and Phoenix, Arizona (>0.5 ?g/g ww). Concentrations of other banned pesticides including toxaphene, total chlordanes, and dieldrin were also greatest at these two sites but did not exceed toxicity thresholds. Current-use or unlisted pesticides such as dacthal, endosulfan, '-HCH, and methoxychlor were also greatest in fish from Gila River. Total polychlorinated biphenyls (PCBs; >0.11 ?g/g ww) and TCDD-EQs (>5 pg/g ww) exceeded wildlife guidelines in fish from the Gila River at Phoenix, Arizona. Hepatic ethoxyresorufin O-deethylase (EROD) activity was also relatively high in carp from the Gila River at Phoenix, Arizona and in bass from the Green River at Ouray NWR, Utah. Altered biomarkers were noted in fish throughout the CDRB. Fish from some stations responded to chronic contaminant exposure as indicated by fish health and reproductive biomarker results. Multiple fish health indicators including altered body and organ weights and high health assessment index scores may be associated with elevated Se concentrations in fish from the Colorado River at Loma, Colorado and Needles, California. Although grossly visible external or internal lesions were found on most fish from some sites, histopathological analysis determined many of these to be inflammatory responses associated with parasites. Edema, exophthalmos, and cataracts were noted in fish from sites with elevated Se concentrations. Reproductive biomarkers including gonad development and maturation, vitellogenin concentrations, and steroid hormone concentrations were anomalous in fish from the Gila River at Hayden and Phoenix, Arizona. In addition, intersex fish were found at seven of 14 sites. The intersex condition was identified in smallmouth bass (M. dolomieu), largemouth bass (M. salmoides), channel catfish, and carp and may indicate exposure to endocrine disrupting compounds. Seven of ten male smallmouth bass from the Yampa River at Lay, Colorado were intersex. Male carp, bass, and channel catfish with low concentrations of vitellogenin were common in the CDRB. Comparatively high vitellogenin concentrations (>0.2 mg/mL) were measured in male fish from the Green River at Ouray NWR, Utah and the Colorado River at Im

Scientific Investigations Report↗
USGS2006

An assessment of flow data from Klamath River sites between Link River Dam and Keno Dam, south-central Oregon

Records of diversion and return flows for water years 1961?2004 along a reach of the Klamath River between Link River and Keno Dams in south-central Oregon were evaluated to determine the cause of a water-balance inconsistency in the hydrologic data. The data indicated that the reach was losing flow in the 1960s and 1970s and gaining flow in the 1980s and 1990s. The absolute mean annual net water-balance difference in flows between the first and second half of the 44-year period (1961-2004) was approximately 103,000 acre-feet per year (acre-ft/yr). The quality of the diversion and return-flow records used in the water balance was evaluated using U.S. Geological Survey (USGS) criteria for accuracy. With the exception of the USGS Klamath River at Keno record, which was rated as 'good' or 'excellent,' the eight other flow records, all from non-USGS flow-measurement sites, were rated as 'poor' by USGS standards due to insufficient data-collection documentation and a lack of direct discharge measurements to verify the rating curves. The record for the Link River site, the most upstream in the study area, included both river and westside power canal flows. Because of rating curve biases, the river flows might have been overestimated by 25,000 acre-ft/yr on average from water years 1961 to 1982 and underestimated by 7,000 acre-ft/yr on average from water years 1983 to 2004. For water years 1984-2004, westside power canal flows might have been underestimated by 11,000 acre-ft/yr. Some diversion and return flows (for mostly agricultural, industrial, and urban use) along the Klamath River study reach, not measured continuously and not included in the water-balance equation, also were evaluated. However, the sum of these diversion and return flows was insufficient to explain the water-balance inconsistency. The possibility that ground-water levels in lands adjacent to the river rose during water years 1961-2004 and caused an increase in ground-water discharge to the river also was evaluated. However, water-level data from local wells did not have a rising trend during the period. The most likely cause of the water-balance inconsistency was flow measurement error in the eight non-USGS flow records. Part of the water-balance inconsistency can be explained by a 43,000 acre-foot error in the river and canal flow portions of the Link River flow record. A remaining 60,000 acre-foot error might have been distributed among the seven other flow records, or much of the remaining 60,000 acre-foot error might have been in the Link River flow record because flows in that record had a greater magnitude than flows in the seven other records. As an additional analysis of the water-balance issue, flow records used in the water balance were evaluated for trends and compared to known changes in water management in the Bureau of Reclamation Klamath Project and Lower Klamath and Tule Lake National Wildlife Refuges over the 44-year period. Many of the water-management changes were implemented in the early 1980s. For three diversion flow records, 1983-2004 mean annual flows were 16,000, 8,000, and 21,000 acre-ft/yr greater than their 1961-82 mean annual flows. Return flows to the Klamath River at two flow-measurement sites decreased by 31,000 and 27,000 acre-ft/yr for 1983-2004 compared with the 1961-82 period.

Scientific Investigations Report↗
USGS2007

Survey of chemical contaminants in the Hanalei River, Kaua'i, Hawai'i, 2001

The Hanalei River on the island of Kaua'i in Hawai'i was designated an American Heritage River in 1998, providing special attention to natural resource protection, economic revitalization, and historic and cultural preservation. Agricultural, urban, and tourism-related activities are potential sources of contamination within the Hanalei River watershed. The objective of this study was to measure certain persistent organic chemicals and elements in the Hanalei River. During a relatively low-flow period in December of 2001, samples of native Akupa sleeper fish ( Eleotris sandwicensis ), freshwater Asian clam ( Corbicula fluminea ), giant mud crab ( Scylla serrata ), surface water, and stream bed sediment were collected from a lower estuarine reach of the river near its mouth at Hanalei Bay and from an upper reach at the Hanalei National Wildlife Refuge. Samples were analyzed for residues of urban and agricultural chemicals including organochlorine pesticides, polychlorinated biphenyls, polycyclic aromatic hydrocarbons, and elements (including mercury, lead, cadmium, arsenic, and selenium). Organic contaminants were extracted from the samples with solvent, enriched, and then analyzed by gas chromatographic analysis with electron capture or mass spectrometric detection. Samples were acid-digested for semi-quantitative analysis for elements by inductively-coupled plasma-mass spectrometry and for quantitative analysis by atomic absorption spectrophotometry. Concentrations of organochlorine pesticides, polycyclic aromatic hydrocarbons, and polychlorinated biphenyls in biota, surface water, and bed sediment sampled from the Hanalei River ranged from nondetectable to very low levels. Polychlorinated biphenyls were below detection in all samples. Dieldrin, the only compound detected in the water samples, was present at very low concentrations of 1-2 nanograms per liter. Akupa sleeper fish and giant mud crabs from the lower reach ranged from 1 to 5 nanograms per gram (wet weight) dieldrin and from less than 0.3 to 2.1 nanograms per gram total chlordane. Concentrations of individual polycyclic aromatic hydrocarbons in the lower reach bed sediments ranged from less than 1 to 190 nanograms per gram (dry weight). Relative concentrations (patterns) of the polycyclic aromatic hydrocarbons in one portion of a sediment sample indicated combustion sources. Concentrations of elements in the surface water, biota, and sediment samples were below toxicity thresholds of ecological concern. In summary, concentrations of the organic contaminants and elements targeted by this study of the Hanalei River in 2001 were below U.S. Environmental Protection Agency probable adverse effects levels for aquatic organisms.

Scientific Investigations Report↗
USGS2015

Effects of groundwater pumping on agricultural drains in the Tule Lake subbasin, Oregon and California

Since 2001, irrigators in the upper Klamath Basin have increasingly turned to groundwater to compensate for reductions in surface-water allocation caused by shifts from irrigation use to instream flows for Endangered Species Act listed fishes. The largest increase in groundwater pumping has been in and around the Bureau of Reclamation’s Klamath Irrigation Project, which includes the Tule Lake subbasin in the southern part of the upper Klamath Basin. Agricultural drains on the Klamath Project are an important source of water for downstream irrigators and for the Tule Lake and Lower Klamath Lake National Wildlife Refuges. U.S. Geological Survey regional groundwater-flow model simulations and records of irrigation-return flow pumped from the Tule Lake subbasin into the adjacent Lower Klamath Lake subbasin have indicated that water-level declines from pumping may be causing decreased flow of shallow groundwater to agricultural drains. To better define the effect of increased pumping on drain flow and on the water balance of the groundwater system, the annual water volume pumped from drains in three subareas of the Tule Lake subbasin was estimated and a fine-grid, local groundwater model of the Tule Lake subbasin was constructed. Results of the agricultural-drain flow analysis indicate that groundwater discharge to drains has decreased such that flows in 2012 were approximately 32,400 acre-ft less than the 1997–2000 average flow. This decrease was concentrated in the northern and southeastern parts of the subbasin, which corresponds with the areas of greatest groundwater pumping. Model simulation results of the Tule Lake subbasin groundwater model indicate that increased supplemental pumping is the dominant stress to the groundwater system in the subbasin. Simulated supplemental pumping and decreased recharge from irrigation between 2000 and 2010 totaled 323,573 acre-ft, 234,800 acre-ft (73 percent) of which was from supplemental pumping. The response of the groundwater system to this change in stress included about 180,500 acre-ft (56 percent) of decreased groundwater discharge to drains and a 126,000 acre-ft (39 percent) reduction in aquifer storage. The remaining 5 percent came from reduced groundwater flow to other model boundaries, including the Lost River, the Tule Lake sumps, and interbasin flow.

California, Oregon↗
USGS2015

Groundwater and surface-water interaction and effects of pumping in a complex glacial-sediment aquifer, phase 2, east-central Massachusetts

The U.S. Geological Survey, in cooperation with the Town of Framingham, Massachusetts, has investigated the potential of proposed groundwater withdrawals at the Birch Road well site to affect nearby surface water bodies and wetlands, including Lake Cochituate, the Sudbury River, and the Great Meadows National Wildlife Refuge in east-central Massachusetts. In 2012, the U.S. Geological Survey developed a Phase 1 numerical groundwater model of a complex glacial-sediment aquifer to synthesize hydrogeologic information and simulate potential future pumping scenarios. The model was developed with MODFLOW-NWT, an updated version of a standard USGS numerical groundwater flow modeling program that improves solution of unconfined groundwater flow problems. The groundwater model and investigations of the aquifer improved understanding of groundwater–surface-water interaction and the effects of groundwater withdrawals on surface-water bodies and wetlands in the study area. The initial work also revealed a need for additional information and model refinements to better understand this complex aquifer system. In this second phase of the study, the original groundwater flow model was revised to improve representation of groundwater and surface-water hydrology, stabilize the model, and reduce model error. The model was simplified by reducing the number of layers from 5 to 3 and adding the MODFLOW lake package (LAK) to simulate Lake Cochituate and Pod Meadow Pond and better represent interaction between the lakes and the aquifer. Model revisions improved stability and shortened run times, allowing use of automated parameter estimation software (PEST) to further refine the model hydraulic parameters and reduce simulation errors. Model simulations indicate that under average base-flow conditions, the Birch Road wells have a small effect on flow in the Sudbury River during most months, even at the maximum pumping rate of 4.9 ft 3 /s (3.17 Mgal/d). Maximum percent streamflow depletion in the Sudbury River caused by simulated pumping takes place during simulated drought conditions, when streamflow decreased by as much as 21 percent under maximum continuous pumping. Simulations also indicate that groundwater withdrawals at the Birch Road site could be managed so that adverse streamflow impacts are substantially ameliorated. Under the most ecologically conservative simulated drought conditions, simulated streamflow depletion was reduced from 21 percent to 3 percent by pumping at the maximum rate for 6 months rather than for 12 months. Simulations that return 10 percent of the Birch Road well withdrawals to Pod Meadow Pond indicate a modest reduction in the Sudbury River streamflow depletion and provide a larger percentage increase to streamflow just downstream of the pond. The groundwater model also indicates that well locations can have a large effect on the sustainable pumping rate and so should be chosen carefully. The model provides a tool for evaluating alternative pumping rates and schedules not included in this analysis.

Massachusetts↗
USGS2016

Groundwater-level change and evaluation of simulated water levels for irrigated areas in Lahontan Valley, Churchill County, west-central Nevada, 1992 to 2012

The acquisition and transfer of water rights to wetland areas of Lahontan Valley, Nevada, has caused concern over the potential effects on shallow aquifer water levels. In 1992, water levels in Lahontan Valley were measured to construct a water-table map of the shallow aquifer prior to the effects of water-right transfers mandated by the Fallon Paiute-Shoshone Tribal Settlement Act of 1990 (Public Law 101-618, 104 Stat. 3289). From 1992 to 2012, approximately 11,810 water-righted acres, or 34,356 acre-feet of water, were acquired and transferred to wetland areas of Lahontan Valley. This report documents changes in water levels measured during the period of water-right transfers and presents an evaluation of five groundwater-flow model scenarios that simulated water-level changes in Lahontan Valley in response to water-right transfers and a reduction in irrigation season length by 50 percent. Water levels measured in 98 wells from 2012 to 2013 were used to construct a water-table map. Water levels in 73 of the 98 wells were compared with water levels measured in 1992 and used to construct a water-level change map. Water-level changes in the 73 wells ranged from -16.2 to 4.1 feet over the 20-year period. Rises in water levels in Lahontan Valley may correspond to annual changes in available irrigation water, increased canal flows after the exceptionally dry and shortened irrigation season of 1992, and the increased conveyance of water rights transferred to Stillwater National Wildlife Refuge. Water-level declines generally occurred near the boundary of irrigated areas and may be associated with groundwater pumping, water-right transfers, and inactive surface-water storage reservoirs. The largest water-level declines were in the area near Carson Lake. Groundwater-level response to water-right transfers was evaluated by comparing simulated and observed water-level changes for periods representing water-right transfers and a shortened irrigation season in areas near Fallon and Stillwater, Nevada. In the Stillwater modeled area, water rights associated with nearly 50 percent of the irrigated land were transferred from 1992 to 1998, represented by the model scenario reduction in groundwater recharge by 50 percent. The scenario resulted in a simulated average decline of 0.6 foot; average observed water-level change for the modeled area was estimated to be 0.0 foot, or no change. In the Fallon modeled area, transfers of water rights associated with 180 acres of land occurred from 1994 to 2008. The transfer is most similar to the scenario for removal of 320 acres of irrigated land. The model scenario resulted in simulated water-level declines of 0.1; water levels measured from 1994 to 2012 indicate no significant trends in water levels, or approximately zero change in water levels, for the Fallon modeled area. The model scenarios included the simulation of a irrigation season shortened by 50 percent, which was determined to have occurred in the 1992 irrigation season in both modeled areas. The shortening of the irrigation season in the Fallon modeled area resulted in simulated water-level declines of 1.1 feet; observed declines were estimated to be 1.3 feet. The Stillwater model simulations resulted in a simulated decline of 1.4 feet, and observed water levels declined an estimated 2.3 feet for the area. The estimated difference between simulated and observed water levels are 0.2 and 0.9 foot for the Fallon and Stillwater modeled areas, respectively. Observed water-level changes were generally within one standard deviation of changes from model simulations, based on the selected periods of comparison. Simulated and observed water-level changes agree well, generally within 1 foot; however, the model scenarios were only approximately similar to the observed conditions, and periods of comparison were generally shorter for the observed periods and included additional cumulative effects of water-right transfers. Climate variability was not considered in the model scenarios.

Nevada↗
USGS2017

The 2014 eruptions of Pavlof Volcano, Alaska

Pavlof Volcano is one of the most frequently active volcanoes in the Aleutian Island arc, having erupted more than 40 times since observations were first recorded in the early 1800s . The volcano is located on the Alaska Peninsula (lat 55.4173° N, long 161.8937° W), near Izembek National Wildlife Refuge. The towns and villages closest to the volcano are Cold Bay, Nelson Lagoon, Sand Point, and King Cove, which are all within 90 kilometers (km) of the volcano (fig. 1). Pavlof is a symmetrically shaped stratocone that is 2,518 meters (m) high, and has about 2,300 m of relief. The volcano supports a cover of glacial ice and perennial snow roughly 2 to 4 cubic kilometers (km 3 ) in volume, which is mantled by variable amounts of tephra fall, rockfall debris, and pyroclastic-flow deposits produced during historical eruptions. Typical Pavlof eruptions are characterized by moderate amounts of ash emission, lava fountaining, spatter-fed lava flows, explosions, and the accumulation of unstable mounds of spatter on the upper flanks of the volcano. The accumulation and subsequent collapse of spatter piles on the upper flanks of the volcano creates hot granular avalanches, which erode and melt snow and ice, and thereby generate watery debris-flow and hyperconcentrated-flow lahars. Seismic instruments were first installed on Pavlof Volcano in the early 1970s, and since then eruptive episodes have been better characterized and specific processes have been documented with greater certainty. The application of remote sensing techniques, including the use of infrasound data, has also aided the study of more recent eruptions. Although Pavlof Volcano is located in a remote part of Alaska, it is visible from Cold Bay, Sand Point, and Nelson Lagoon, making distal observations of eruptive activity possible, weather permitting. A busy air-travel corridor that is utilized by a numerous transcontinental and regional air carriers passes near Pavlof Volcano. The frequency of air travel across the region results in a relatively large number of airborne observations of eruptive activity. During the 2014 Pavlof eruptions, the Alaska Volcano Observatory received observations and photographs from pilots and local observers, which aided evaluation of the eruptive activity and the areas affected by eruptive products. This report outlines the chronology of events associated with the 2014 eruptive activity at Pavlof Volcano, provides documentation of the style and character of the eruptive episodes, and reports briefly on the eruptive products and impacts. The principal observations are described and portrayed on maps and photographs, and the 2014 eruptive activity is compared to historical eruptions.

Alaska↗
USGS2018

Nutrient loads in the Lost River and Klamath River Basins, south-central Oregon and northern California, March 2012–March 2015

The U.S. Geological Survey and Bureau of Reclamation collected water-quality data from March 2012 to March 2015 at locations in the Lost River and Klamath River Basins, Oregon, in an effort to characterize water quality and compute a nutrient budget for the Bureau of Reclamation Klamath Reclamation Project. The study described in this report resulted in the following significant findings: Total phosphorus (TP), total nitrogen (TN), 5-day biochemical oxygen demand (BOD5), and 5-day carbonaceous biochemical oxygen demand (CBOD5) loads, calculated using the U.S. Geological Survey LOADEST software package at the upper and lower boundaries of the Klamath Reclamation Project, indicated higher loads at the upper boundary on the southern end of Upper Klamath Lake upstream of the Bureau of Reclamation A Canal diversion compared to the lower boundary on the Klamath River downstream of Keno Dam. Accounting for the diversion of loads down A Canal, BOD5 and CBOD5 loads decreased between these two sites during irrigation season, indicating that the Klamath Reclamation Project is not a large source of oxygen-demanding material and that much of the oxygen demand at study site FMT, the northern boundary of the study area, has been expressed by the time the same water passes through site KRK, the southern boundary of the study area. An evaluation of the nutrient balance along the Klamath River flowpath from sites FMT to KRK indicated that, during irrigation season in the 3 years of the study period (March 2012–March 2015), more loads of TP, TN, BOD5, and CBOD5 were being diverted from the Klamath River than were being added to the Klamath River from the combination of Klamath Straits Drain, regulated point sources along the Klamath River, and internal loading from the bottom sediments in the river. By contrast, during non-irrigation seasons, more loads were added to the Klamath River than were diverted through Ady and North Canals, and this difference primarily was due to additional loads to the river from the Lost River Diversion Channel. At the Lost River Diversion Channel, BOD5 loads were higher during irrigation season than non-irrigation season in all three study years owing to the high concentrations of oxygen-demanding cyanobacterial biomass from the seasonal blooms of Aphanizomenon flos-aquae in the Klamath River and Upper Klamath Lake. The difference between the two seasons was particularly large in years 2 and 3, when the low flows of these two drought years resulted in smaller nonirrigation period loads than in year 1. CBOD5 loads also were higher during irrigation season in years 2 and 3 than during non-irrigation season, indicating that the largest oxygen demand was coming from senescence of Aphanizomenon flos-aquae cells that are present in the Klamath River during the summer. However, during irrigation season in year 1, CBOD5 loads were lower than in the non-irrigation season, which may indicate that at times high concentrations of ammonia or cellular organic nitrogen leaving Upper Klamath Lake contribute a large nitrogenous oxygen demand as well. The smallest loads were computed for the farthest upstream sites in the Lost River Basin, suggesting that the upper Lost River Basin does not contribute substantial loads of TP, TN, BOD5, and CBOD5 to the Klamath Reclamation Project. Median concentrations of BOD5 and CBOD5 were lowest among the upper Lost River Basin sites and highest at site PPD (however, this comparison is based on only four samples collected at site PPD over the 3-year study). Median concentrations of BOD5 and CBOD5 also were elevated at sites KSDH (6.60 and 4.70 milligrams per liter [mg/L], respectively) and KSD97 (4.47 and 3.45 mg/L, respectively). The highest maximum BOD5 and CBOD5 concentrations were reported at the Lost River Diversion Channel (39.0 and 26.5 mg/L, respectively) when water was flowing from the Klamath River toward the Klamath Reclamation Project, and site FMT (25.0 and 23.9 mg/L, respectively), the study site at the southern end of Upper Klamath Lake. Carbonaceous oxygen demand, as represented by CBOD5, typically dominated the composition of the samples at all sites. The highest concentrations of dissolved organic carbon were present at sites KSDH (the headworks of Klamath Straits Drain) and KSD97 (Klamath Straits drain before it enters the Klamath River), and PPD (outlet of Tule Lake). Median concentrations of TN and TP at the upper Lost River Basin sites in years 1 and 2 were variable, but site MCRV showed a smaller range of values in those years compared to the other upper Lost River Basins sites, and an overall lower median concentration during irrigation seasons in years 1 and 2, suggesting that Gerber Reservoir does not contribute high concentrations of nutrients to the Lost River during irrigation season. Total Maximum Daily Load (TMDL) load allocations for TP and TN in Klamath Straits Drain were exceeded in all three study years. BOD5 load allocations were exceeded in years 1 and 2, but not year 3. TMDL load allocations for TP were exceeded in the Lost River Diversion Channel for all 3 years. Load allocations for TN were exceeded in year 1, but not in years 2 and 3. BOD5 loads were less than the TMDL load allocation for all three study years. The dearth of samples collected at the Klamath Straits Drain just downstream of the Lower Klamath National Wildlife Refuge did not allow for direct assessment of the Klamath Straits Drain acting as a nutrient source or sink. TP, TN, BOD5, and CBOD5 loads estimated during the study period likely were smaller than long-term average conditions because of persistent drought conditions in the Upper Klamath Basin. The study results, therefore, fail to characterize loads from the Klamath Reclamation Project to the Klamath River that could be present in typical years, and suggest the need for load assessments during average or aboveaverage streamflow years.

California, Oregon↗
USGS2018

Modeling hydrodynamics, water temperature, and water quality in Klamath Straits Drain, Oregon and California, 2012–15

Executive Summary Located southwest of Klamath Falls, Oregon, Klamath Straits Drain is a 10.1-mile-long canal that conveys water uphill and northward through the use of pumps before discharging to the Klamath River. Klamath Straits Drain traverses an area that historically encompassed Lower Klamath Lake. Currently, the Drain receives water from farmland and from parts of the Lower Klamath Lake National Wildlife Refuge. To support water-quality improvement in Klamath Straits Drain, a hydrodynamic and water-temperature model was constructed and calibrated for calendar years 2012–15 with the two-dimensional model CE-QUAL-W2 (version 4.0). Water quality was calibrated for a subset of that time, from April 1, 2012 to March 31, 2015. Flows in calendar year 2012 were within the normal range, while calendar years 2013–15 were dry years. Significant findings from this study include: In the years studied, only limited flow entered Klamath Straits Drain at the upstream Headworks (KSDH) site. Most flow entered the Drain between KSDH and the E-EE pumps near Township Road through several irrigation channels and ditches. Few data were available to describe the quality of this water for the period of study. The E-EE and F-FF pumps along Klamath Straits Drain mainly operated automatically to keep water levels relatively steady. Ten-minute flow data at streamgage 11509340, downstream of the F-FF pumps, showed high-frequency on/off switching of the F-FF pumps. Combined with daily mean flow data from the F-FF pumps, the downstream 10-minute flow data allowed estimation of 10-minute pumping rates for the F-FF pumps. Paper pump charts showed the existence of short-term variability at the E-EE pumps; however, daily pump data were used at the E-EE pump location in the model. Water temperature in Klamath Straits Drain varied from less than 5 degrees Celsius (°C) (with occasional ice cover in December–January) to greater than 20 °C in May–September. In the years studied, specific conductance was typically 250–850 microsiemens per centimeter, higher than Klamath River specific conductance (typically 100–200 microsiemens per centimeter). Increased chlorophyll a in autumn and winter, along with supersaturated oxygen concentrations, indicated algal blooms in the Drain at that time of year. The blooms were most likely diatoms, based on the timing of blooms sampled elsewhere. Total nitrogen concentration was as much as 5.5 mg/L, with most in dissolved organic and particulate forms, and lower amounts in ammonia and nitrate+nitrite. Total phosphorus concentrations were distributed between orthophophorus (at a median concentration of 0.15 mg/L) and organic and particulate forms (at a median concentration of 0.13 mg/L). Most of the organic carbon in the Klamath Straits Drain was in dissolved rather than particulate form. Newly collected water-quality data for April 1, 2012–March 31, 2015 helped provide the impetus for this modeling study. However, a lack of some data still hindered the construction and calibration of this model. The model would benefit from additional data to describe water-quality boundary conditions, water-quality calibration data upstream of the F-FF pumps, short-term E-EE pump operations, and channel bathymetry in the reach between Highway 97 and the confluence with the Klamath River. Klamath River water mixed upstream into the Klamath Straits Drain, up to the Klamath Straits Drain F-FF pumps at Highway 97, when the F-FF pumps were not operating for periods of hours to days. The F-FF pumps were off for many days during this study, especially during dry years. The boundary between Klamath Straits Drain and the Klamath River was best modeled with an external head condition, which allows exchange of water between the river and the drain in both directions, upstream and downstream. Currently there is a flow gage, water-quality monitor, and a water-quality sampling site located downstream of the F-FF pumps, in the reach where Klamath Straits Drain water can mix with Klamath River water. To sample solely Klamath Straits Drain water, water samples would need to be collected only when the F-FF pumps are actively pumping. Alternately, the sampling location could be moved upstream of the pumps. Interpretation and use of historical water-quality data at the Klamath Straits Drain at Highway 97 site should be done in conjunction with information on pump activity to help inform whether mixing with Klamath River water may have occurred. Total 2014 (a dry year) phosphorus loads from the Drain to the Klamath River were lower and closer to total maximum daily load (TMDL) allocations, as compared to 2013, a year with greater flow and pumping. Modeled travel time through the Klamath Straits Drain, from Headworks to its confluence with the Klamath River, ranged from approximately 24 hours at high flow to 16 days or more, depending on how many days the pumps were turned off. The longer travel times are sufficient for important water-quality transformations, such as algal growth and organic-matter decomposition. This newly constructed model of the Klamath Straits Drain simulates flow, water levels, water temperature, and water quality with acceptable accuracy but with certain data limitations. This model should prove useful in evaluating potential strategies for flow and water-quality management and restoration.

California, Oregon↗
USGS2022

Main-stem seepage and base-flow recession time constants in the Niobrara National Scenic River Basin, Nebraska, 2016–18

The Niobrara River of northern Nebraska is a valuable water resource that sustains irrigated agriculture and recreation, as well as a diverse ecosystem. Large-quantity withdrawals from the source aquifer system have the potential to reduce the flow into the river and to adversely affect the free-flowing condition of the Niobrara National Scenic River (NSR). Therefore, to understand the magnitude and characteristics of those flows, the U.S. Geological Survey (USGS), in cooperation with the National Park Service, began a study to quantify seepage gains/losses along the eastern half of the Niobrara NSR and to create a map characterizing the base-flow recession time constant (tau) in the Niobrara NSR study area. In 2016, a seepage study was completed to quantify seepage gains/losses along the eastern half of the Niobrara NSR. The seepage study results indicated that the main-stem streamflow on the Niobrara River increases 375 cubic feet per second (ft 3 /s) in the 39.9-mile study reach (river mile 119.3 to river mile 79.4). Although most of the streamflow increases are attributed to tributary inflows (297 ft 3 /s, 79 percent), 78 ft 3 /s are attributed to seepage gains within the reach. Seepage rates in the study reach ranged from 1.41 cubic feet per second per mile ([ft 3 /s]/mi) to 2.56 (ft 3 /s)/mi, with a mean seepage rate of 2 (ft 3 /s)/mi. Tau values were calculated at 10 sites in the Niobrara NSR study area, and kriging geostatistical techniques were used to develop a contour map to estimate tau values at locations where streamflow was not measured. The minimum tau value was 12.1 days at Willow Creek at Atwood Road near Carns, Nebraska (USGS station 06463670), and the maximum value was 45.5 days at Tyler Falls at Fort Niobrara National Wildlife Refuge near Valentine, Nebr. (USGS station 06461150).

Nebraska↗
USGS2015

Introduction

This is the third iteration of the National Wildlife Health Center's (NWHC) field guide developed primarily to assist field managers and biologists address diseases they encounter. By itself, the first iteration, “Field Guide of Wildlife Diseases: General Field Procedures and Diseases of Migratory Birds,” was simply another addition to an increasing array of North American field guides and other publications focusing on disease in free-ranging wildlife populations. Collectively, those publications were reflecting the ongoing transition in the convergence of wildlife management and wildlife disease as foundational components within the structure of wildlife conservation as a social enterprise serving the stewardship of our wildlife resources. For context, it is useful to consider those publications relative to a timeline of milestones involving the evolution of wildlife conservation in North America.

Techniques and Methods↗
USGS2000

Selected organic compounds and trace elements in streambed sediments and fish tissues, Cook Inlet Basin, Alaska

Organochlorines, semivolatile organic compounds (SVOCs), and trace elements were investigated in streambed sediments and fish tissues at selected sites in the Cook Inlet Basin, Alaska, during 1998. At most sites, SVOCs and organochlorine compounds were either not detected or detected at very low concentrations. Chester Creek at Arctic Boulevard at Anchorage, which was the only site sampled with a significant degree of development in the watershed, had elevated levels of many SVOCs in streambed sediment. Coring of sediments from two ponds on Chester Creek confirmed the presence of elevated concentrations of a variety of organic compounds. Moose Creek, a stream with extensive coal deposits in its watershed, had low concentrations of numerous SVOCs in streambed sediment. Three sites located in national parks or in a national wildlife refuge had no detectable concentrations of SVOCs. Trace elements were analyzed in both streambed sediments and tissues of slimy sculpin. The two media provided similar evidence for elevated concentrations of cadmium, lead, and zinc at Chester Creek. In this study, 'probable effect levels '(PELs) were determined from sediments finer than 0.063 millimeters, where concentrations tend to be greatest. Arsenic and chromium concentrations exceeded the PEL at eight and six sites respectively. Zinc exceeded the PEL at one site. Cadmium and copper concentrations were smaller than the PEL at all sites. Mercury concentrations in streambed sediments from the Deshka River were near the PEL, and selenium concentrations at that site also appear to be elevated above background levels. At half the sites where slimy sculpin were sampled, selenium concentrations were at levels that may cause adverse effects in some species.

Alaska↗
USGS1983

A preliminary assessment of the hydrologic characteristics of the James River in South Dakota

The James River in South Dakota has very restricted channel capacities within the Lake Dakota Plain. Channel capacities in Brown County are as little as 200 cubic feet per second, and spring flooding can be expected on an average of every other year. The river has potential for extended periods of flooding an average of once in 10 years. Extended periods of no flow during late-summer and winter also can be expected. Excluding flows of a very large magnitude, average travel time between Columbia and Scotland (a distance of 382 river miles) is estimated to be 25-30 days for most flows. The upstream reach of the James River within the Lake Dakota Plain generally loses discharge with distance whereas the downstream reach generally gains discharge with distance. Ground water - surface water interaction does not appear to be significant along upstream reaches of the James River. Some interaction, although not quantified, does occur in Hanson, Davison, and Yankton Counties. Sand Lake National Wildlife Refuge, located just downsteam from the State line and containing Sand and Mud Lakes (combined capacity = 24,600 acre-feet), is a major source of water loss between LaMoure, N. Dak. and Columbia, S. Dak. Gross evaporation losses from the lakes during 1969-81 is estimated to have been slightly more than 29,000 acre-feet per year. Unaccounted-for losses in the lake system are estimated to have been slightly more than 19,000 acre-feet per year. (USGS)

Water-Resources Investigations Report↗
USGS1988

Reconnaissance investigation of water quality, bottom sediment, and biota associated with irrigation drainage in the Sun River area, west-central Montana, 1986-87

The Sun River area was selected for a reconnaissance investigation of irrigation drainage because sufficient information existed to indicate that potential problems of a toxic nature might exist. The area of study included the Sun River Irrigation Project, Freeze-out Lake Game Management Area, and Benton Lake National Wildlife Refuge. Water, bottom sediment , and biota were sampled at selected sites and analyzed for inorganic and organic constituents that could be toxic at large concentrations. Although selenium was of primary concern, other trace elements and selected pesticides were also analyzed. Some water quality problems have been prevalent for many years in the Sun River Irrigation Projects, including the Sun River and Muddy Creek. However, during this study, most sampling sites were free of concentrations of toxic constituents that are in excess of established criteria and standards. There was little change in arsenic, boron, mercury, and selenium concentrations in fish and invertebrates at Sun River sampling sites upstream and downstream from the irrigation project. Presently, the most serious threat within the irrigation project appears to be from nitrate in groundwater. Water from some wells contains nitrate concentration in excess of drinking water standards (10 mg/L) established for the State of Montana. The largest selenium concentrations in water and bottom sediment were from seeps that surround Benton Lake, with maximum concentrations of 580 mg/L in water and biological samples. Several eared-grebe livers from Freezeout Lake and several coot livers and eggs from Benton Lake had selenium concentrations indicative of contamination. (See also W89-07064) (Author 's abstract)

Water-Resources Investigations Report↗
USGS1989

Streamflow at selected gaging stations on the James River in North Dakota and South Dakota, 1953-82, with a section on climatology

Historic stream flow data were compiled and record extension techniques were used, when necessary, to develop a monthly stream flow record for 1953-82 at streamflow-gaging stations on the James River in North Dakota and South Dakota. The record extension techniques included both Maintenance of Variance Extension Type 1 and Ordinary Least Squares. In addition to the historic stream flow record, synthesized unregulated streamflow was computed for gaging stations on the James River for 1953-82 by eliminating the effects of Jamestown Reservoir, Pipestem Reservoir, Sand Lake National Wildlife Refuge, and the consumptive surface-water withdrawals. Maintenance of Variance Extension Type 1, Ordinary Least Squares regression, water-balance procedures, and drainage-area ratio methods were used to compute the unregulated streamflows. Mean annual historic stream flow of the James River at Jamestown is about 7,000 acre-feet less than the mean annual unregulated streamflow. Mean monthly unregulated streamflow is greater than mean monthly historic streamflow during March, April, and May; during all other months, unregulated stream flow is less than historic streamflow. The climate during 1953-82 was compared to the climate records, which range in length from 53 to 102 years, in the James River basin to determine if the climate during 1953-82 was similar to the climate that has occurred during the last 90 years. On the basis of the climate analysis, the data-development period (1953-82) does not represent an abnormally wet or dry period. Thus, the streamflow during the data-development period represents a range of streamflows that might be expected to occur during the last 90 years.

Water-Resources Investigations Report↗
USGS1994

Development of historic and synthesized unregulated streamflow for the James River in North Dakota and South Dakota, 1983-91

Operation of the Garrison Diversion Unit may have some affect on the hydrology of the James River in North Dakota and South Dakota. The Garrison Diversion Unit Monthly Operations Model was developed to analyze a wide range of streamflow conditions that could occur in the James River Basin. The purpose of this study was to compute monthly streamflows that are required as input to the model. Historic streamflow data were complied and record extension methods were used, when necessary, to compute monthly streamflow for 1983-91 for 15 gaging stations on the James River in North Dakota and South Dakota. The record extension methods used include Maintenance of Variance Extension Type 1, Ordinary Least Squares, and drainage-area ratio. In addition to the historic streamflow, synthesized unregulated streamflow was computed for the 15 gaging stations on the James River for 1983-91 by eliminating the effects of Jamestown Reservoir, Pipestem Reservoir, Sand Lake National Wildlife Refuge, consumptive surface-water withdrawals, and wastewater withdrawals. Maintenance of Variance Extension Type 1, Ordinary Least Squares regression, water-balance procedures, and drainage-area ratio method were used to compute the unregulated streamflows.

North Dakota, South Dakota↗
USGS1996

Evaluating evapotranspiration for six sites in Benton, Spokane, and Yakima counties, Washington, May 1990 to September 1992

This report evaluates evapotranspiration for six sites in Benton, Spokane, and Yakima Counties, Washington. Three sites were located on the Arid Lands Ecology Reserve in Benton County: one at a full-canopy grassland in Snively Basin (Snively Basin site), one at a sparse-canopy grassland adjacent to two weighing lysimeters (grass lysimeter site), and one at a sagebrush grassland adjacent to two weighing lysimeters (sage lysimeter site). Two sites were located on the Turnbull National Wildlife Refuge in Spokane County: one at a full-canopy grassland in a meadow (Turnbull meadow site), the other a full-canopy grassland near a marsh (Turnbull marsh site). The last site was located in a sagebrush grassland in the Black Rock Valley in Yakima County (Black Rock Valley site). The periods of study at the six sites varied, ranging from 5 months at the Black Rock Valley site to more than 2 years at the Snively Basin, grass lysimeter, and sage lysimeter sites. The periods of study were May 1990 to September 1992 for the Snively Basin, grass lysimeter, and sage lysimeter sites; May 1991 to September 1992 for the Turnbull meadow site; May 1991 to April 1992 for the Turnbull marsh site; and March to September 1992 for the Black Rock Valley site. Evapotranspiration and energy-budget fluxes were estimated for the Snively Basin site, the Turnbull meadow site, and the Black Rock Valley site using the Bowen-ratio and Penman-Monteith methods. Daily evapotranspiration for the Snively Basin site was also estimated using a deep-percolation model for the Columbia Basin. The Bowen-ratio method and weighing lysimeters were used at the grass and sage lysimeter sites. The Penman-Monteith method was used at the Turnbull marsh site. Daily evapotranspiration at the sites ranged from under 0.2 millimeter during very dry or cold periods to over 4\x11millimeters after heavy rainfall or during periods of peak transpiration. At all sites, peak evapotranspiration occurred in spring, coinciding with plant growth, and the lowest evapotranspiration occurred in late summer and winter, coinciding with plant dormancy and extremely hot or cold temperatures. Water budgets for the Snively Basin, grass lysimeter, and sage lysimeter sites were based on estimates of precipitation, evapotranspiration, and surface runoff. Surface runoff was estimated at zero for all sites. For the Snively Basin site, 1991 and 1992 water budgets using Penman-Monteith evapotranspiration estimates agreed within 1 percent of the annual budgets computed using deep-percolation model estimates; daily estimates of evapotranspiration by the two methods varied considerably, however. For the Snively Basin site, 100 percent of the precipitation became ET in 1991, and in 1992, about 91 percent of the precipitation became evapotranspiration. Water budgets based on weighing lysimeter data at the grass and sage lysimeter sites agreed within 1 percent of each other for 1991 and within 5 percent of each other for 1992. For 1991, 10 percent of the precipitation became ET at both lysimeter sites. For 1992, 94 to 98 percent of the precipitation became ET at the grass lysimeter site while 98 to 9 percent of the precipitation became ET at the sage lysimeter site. Though there were uncertainties in the methods used, recharge estimates for the Snively Basin and grass and sage lysimeter sites were of the same order of magnitude. The Penman-Monteith method (which incorporated Bowen-ratio measurements), deep- percolation model, and weighing lysimeters indicated that no recharge to subsurface systems (soil profile, unsaturated zone, and ground water) occurred in 1991 and that, in 1992, recharge to subsurface systems was probably less than 10 percent of the annual precipitation at the Snively Basin and grass and sage lysimeter sites.

Washington↗