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SAHM:VisTrails (Software for Assisted Habitat Modeling for VisTrails): training course

VisTrails is an open-source management and scientific workflow system designed to integrate the best of both scientific workflow and scientific visualization systems. Developers can extend the functionality of the VisTrails system by creating custom modules for bundled VisTrails packages. The Invasive Species Science Branch of the U.S. Geological Survey (USGS) Fort Collins Science Center (FORT) and the U.S. Department of the Interior’s North Central Climate Science Center have teamed up to develop and implement such a module—the Software for Assisted Habitat Modeling (SAHM). SAHM expedites habitat modeling and helps maintain a record of the various input data, the steps before and after processing, and the modeling options incorporated in the construction of an ecological response model. There are four main advantages to using the SAHM:VisTrails combined package for species distribution modeling: (1) formalization and tractable recording of the entire modeling process; (2) easier collaboration through a common modeling framework; (3) a user-friendly graphical interface to manage file input, model runs, and output; and (4) extensibility to incorporate future and additional modeling routines and tools. In order to meet increased interest in the SAHM:VisTrails package, the FORT offers a training course twice a year. The course includes a combination of lecture, hands-on work, and discussion. Please join us and other ecological modelers to learn the capabilities of the SAHM:VisTrails package.

Fact Sheet↗

U.S. Geological Survey National Water Census: Colorado River Basin Geographic Focus Area Study

Introduction The U.S. Geological Survey’s (USGS) concept of a national census (or accounting) of water resources has evolved over the last several decades as the Nation has experienced increasing concern over water availability for multiple competing uses. The implementation of a USGS National Water Census was described in the USGS 2007 science strategy document that identified the highest priority science topics for the decade 2007–17. In 2009, the SECURE Water Act (Public Law 111–11, subtitle F) authorized the USGS to create a Water Availability and Use Assess­ment Program for the Nation, and in 2012, the Department of the Interior WaterSMART initiative provided funding to begin implementation of the USGS National Water Census (NWC). Generally, the USGS NWC approaches water-availability assessment in terms of a “water budget.” The water-budget approach seeks to better quantify the inflows and outflows of water, as well as the change in storage volume, both nationally and at a regional scale and, by doing so, provides critical information to managers and stakeholders responsible for making water-availability decisions. The NWC has two primary components: Topical Studies and Geographic Focus Area Studies. Topical Studies do research on methods that can provide nationwide estimates of particular water-budget components at the subwatershed scale. Some examples of NWC Topical Studies include estimation of streamflow at ungaged locations; periodic quantification of evapotranspiration; and water use related to development of unconventional oil and gas. These efforts are planned to include additional topics in the future. Geographic Focus Area Studies (FASs) assess water availability and use within a defined geographic area, typically a surface-water drainage basin, to increase the understanding of factors affecting water availability in the region. In the FASs, local stakeholder input helps the USGS identify what components of the water budget are in most need of additional understanding or quantification. Focus Area Studies are planned as 3-year efforts and, typically, three FASs are ongoing in different parts of the country at any given time. The Colorado River Basin (CRB) and the Delaware and Apalachicola-Chattahoochee-Flint (ACF) River Basins were selected by the Department of the Interior for the first round of FASs because of the perceived water shortages in the basins and potential conflicts over water supply and allocations. After gathering input from numerous stakeholders in the CRB, the USGS determined that surface­-water resources in the basin were already being closely monitored and that the most important scientific contribution could be made by helping to improve estimates of four water­-budget components: evapotranspiration losses, snowpack hydrodynamics, water­-use information, and the relative importance of groundwater discharge in supporting streamflow across the basin. The purpose of this fact sheet is to provide a brief summary of the CRB FAS results as the study nears completion. Although some project results are still in the later stages of review and publication, this fact sheet provides an overall description of the work completed and cites the publications in which additional information can be found.

Arizona, California, Colorado, Nevada, New Mexico,↗

Controlled photomosaic map of Callisto JC 15M CMN

This sheet is one in a series of maps of the Galilean satellites of Jupiter at a nominal scale of 1:15,000,000. This series is based on data from the Galileo Orbiter Solid-State Imaging (SSI) camera and the cameras of the Voyager 1 and 2 spacecraft. Mercator and Polar Stereographic projections used for this map of Callisto are based on a sphere having a radius of 2,409.3 km. The scale is 1:8,388,000 at ±56° latitude for both projections. Longitude increases to the west in accordance with the International Astronomical Union (1971) (Seidelmann and others, 2002). The geometric control network was computed at the RAND Corporation using RAND's most recent solution as of April 1999 (Davies and Katayama, 1981; Davies and others, 1998). This process involved selecting control points on the individual images, making pixel measurements of their locations, using reseau locations to correct for geometric distortions, and converting the measurements to millimeters in the focal plane. These data are combined with the camera focal lengths and navigation solutions as input to photogrammetric triangulation software that solves for the best-fit sphere, the coordinates of the control points, the three orientation angles of the camera at each exposure (right ascension, declination, and twist), and an angle (W0) which defines the orientation of Callisto in space. W0-in this solution 259.51°-is the angle along the equator to the east, between the 0° meridian and the equator's intersection with the celestial equator at the standard epoch J2000.0. This solution places the crater Saga at its defined longitude of 326° west (Seidelmann and others, 2002). This global map base uses the best image quality and moderate resolution coverage supplied by Galileo SSI and Voyager 1 and 2 (Batson, 1987; Becker and others, 1998; Becker and others, 1999; Becker and others, 2001). The digital map was produced using Integrated Software for Imagers and Spectrometers (ISIS) (Eliason, 1997; Gaddis and others, 1997; Torson and Becker, 1997). The individual images were radiometrically calibrated and photometrically normalized using a Lunar-Lambert function with empirically derived values (McEwen, 1991; Kirk and others, 2000). A linear correction based on the statistics of all overlapping areas was then applied to minimize image brightness variations. The image data were selected on the basis of overall image quality, reasonable original input resolution (from 20 km/pixel for gap fill to as much as 150 m/pixel), and availability of moderate emission/incidence angles for topography. Although consistency was achieved where possible, different filters were included for global image coverage as necessary: clear for Voyager 1 and 2; clear and green (559 nm) for Galileo SSI. Individual images were projected to a Sinusoidal Equal-Area projection at an image resolution of 1.0 kilometer/pixel. The final constructed Sinusoidal projection mosaic was then reprojected to the Mercator and Polar Stereographic projections included on this sheet. The final mosaic was enhanced using commercial software. Names on this sheet are approved by the International Astronomical Union. Names have been applied for features clearly visible at the scale of this map; for a complete list of nomenclature for Callisto, please see the Gazeteer of Planetary Nomenclature. Font color was chosen only for readability.

IMAP↗

Computer program for simulation of variable recharge with the U. S. Geological Survey modular finite-difference ground-water flow model (MODFLOW)

The Variable-Recharge Package is a computerized method designed for use with the U.S. Geological Survey three-dimensional finitedifference ground-water flow model (MODFLOW-88) to simulate areal recharge to an aquifer. It is suitable for simulations of aquifers in which the relation between ground-water levels and land surface can affect the amount and distribution of recharge. The method is based on the premise that recharge to an aquifer cannot occur where the water level is at or above land surface. Consequently, recharge will vary spatially in simulations in which the Variable- Recharge Package is applied, if the water levels are sufficiently high. The input data required by the program for each model cell that can potentially receive recharge includes the average land-surface elevation and a quantity termed ?water available for recharge,? which is equal to precipitation minus evapotranspiration. The Variable-Recharge Package also can be used to simulate recharge to a valley-fill aquifer in which the valley fill and the adjoining uplands are explicitly simulated. Valley-fill aquifers, which are the most common type of aquifer in the glaciated northeastern United States, receive much of their recharge from upland sources as channeled and(or) unchanneled surface runoff and as lateral ground-water flow. Surface runoff in the uplands is generated in the model when the applied water available for recharge is rejected because simulated water levels are at or above land surface. The surface runoff can be distributed to other parts of the model by (1) applying the amount of the surface runoff that flows to upland streams (channeled runoff) to explicitly simulated streams that flow onto the valley floor, and(or) (2) applying the amount that flows downslope toward the valley- fill aquifer (unchanneled runoff) to specified model cells, typically those near the valley wall. An example model of an idealized valley- fill aquifer is presented to demonstrate application of the method and the type of information that can be derived from its use. Documentation of the Variable-Recharge Package is provided in the appendixes and includes listings of model code and of program variables. Comment statements in the program listings provide a narrative of the code. Input-data instructions and printed model output for the package are included.

Open-File Report↗

Research, methodology, and applications of probabilistic seismic-hazard mapping of the Central and Eastern United States; minutes of a workshop on June 13-14, 2000, at Saint Louis University

The U.S. Geological Survey (USGS) is updating and revising its 1996 national seismic-hazard maps for release in 2001. Part of this process is the convening of four regional workshops with earth scientists and other users of the maps. The second of these workshops was sponsored by the USGS and the Mid-America Earthquake Center, and was hosted by Saint Louis University on June 13-14, 2000. The workshop concentrated on the central and eastern U.S. (CEUS) east of the Rocky Mountains. The tasks of the workshop were to (1) evaluate new research findings that are relevant to seismic hazard mapping, (2) discuss modifications in the inputs and methodology used in the national maps, (3) discuss concerns by engineers and other users about the scientific input to the maps and the use of the hazard maps in building codes, and (4) identify needed research in the CEUS that can improve the seismic hazard maps and reduce their uncertainties. These minutes summarize the workshop discussions. This is not a transcript; some individual remarks and short discussions of side issues and logistics were omitted. Named speakers were sent a draft of the minutes with a request for corrections of any errors in remarks attributed to them. Nine people returned corrections, amplifications, or approvals of their remarks as reported. The rest of this document consists of the meeting agenda, discussion summaries, and a list of the 60 attendees.

Open-File Report↗

Concentrations and loads of cadmium, lead, zinc, and nutrients measured during the 1999 water year within the Spokane River basin, Idaho and Washington

The Remedial Investigation/Feasibility Study conducted by the U.S. Environmental Protection Agency within the Spokane River Basin of northern Idaho and eastern Washington included extensive data-collection activities to determine the nature and extent of trace-element contaminationwithin the basin. The U.S. Geological Survey designed and operated a streamflow and water quality monitoring network in the basin during the 1999 water year (October 1, 1998, through September 30, 1999) in support of this Remedial Investigation/Feasibility Study. The objective for the network was to quantify the absolute and relative magnitude of hydrologic, trace-element, and nutrient loads transported by numerous stream reaches within the Spokane River Basin. Of the 29 water-quality stations in the network, 19 were in the Coeur d?Alene River Basin, 2 were in the St. Joe River Basin, and the remaining 8 were on the Spokane River downstream from Coeur d'Alene Lake. All stations were sampled for whole-water recoverable and dissolved concentrations of cadmium, lead, and zinc. Nitrogen and phosphorus concentrations were sampled at nine stations to determine loads of nutrients into and out of Coeur d'Alene Lake and transported down the Spokane River into the Columbia River. Mean daily discharge during the 1999 water year was about 120 percent of the long-term average. Trace-element loads to the Columbia River were calculated for the basin's terminal station, Spokane River at Long Lake. For whole-water recoverable cadmium, 2,110 pounds, 92 percent of which was dissolved, was delivered to the Columbia River. The Columbia River received 25,000 pounds of whole-water recoverable lead, 29 percent of which was dissolved, from the Spokane River Basin. The largest trace-element load delivered to the Columbia River by the Spokane River was 764,000 pounds of whole-water recoverable zinc, 76 percent of which was dissolved. The primary source of trace-element loads in the Spokane River Basin was the Coeur d'Alene River Basin. The South Fork Coeur d'Alene River was the largest source of dissolved and wholewater recoverable loads of cadmium and zinc. In contrast, the main stem of the Coeur d'Alene River was the largest source of dissolved and wholewater recoverable loads of lead. Within the South Fork, substantial increases in dissolved loads of cadmium, lead, and zinc were detected in excess of those measured by the monitoring network stations upstream from the terminal station, South Fork Coeur d'Alene River near Pinehurst. Much of the added load was attributed to inflow of traceelement-contaminated ground water. Similarly, increases in whole-water recoverable loads of cadmium, lead, and zinc were detected in the South Fork in excess of measured loads; these were attributed largely to erosion and transport of sediment-associated trace elements during increased stream discharge events. Coeur d'Alene Lake received nearly all its trace-element loads from the Coeur d'Alene River. The lake retained the majority of the dissolved and whole-water recoverable loads of lead input to it, but retained almost none of its dissolved and whole-water recoverable loads of zinc. About one-half of the dissolved and whole-water recoverable loads of cadmium was retained in the lake. Within the Spokane River Basin, the largest loads of total nitrogen, 13,000,000 pounds, and total phosphorus, 677,000 pounds, were measuredat Spokane River at Long Lake, the station closest to the Columbia River. At Coeur d'Alene Lake, total nitrogen loads input to the lake from the Coeur d'Alene and St. Joe Rivers totaled 1,890,000 pounds; the lake discharged 2,430,000 pounds. The lake received 253,000 pounds of total phosphorus and discharged 187,000 pounds; thus, 66,000 pounds was retained by the lake.

Idaho↗

MODFLOW-2000, the U.S. Geological Survey Modular Ground-Water Model; documentation of packages for simulating evapotranspiration with a segmented function (ETS1) and drains with return flow (DRT1)

Two new packages for the U.S. Geological Survey modular finite-difference ground-water-flow model MODFLOW-2000 are documented. The new packages provide flexibility in simulating evapotranspiration and drain features not provided by the MODFLOW-2000 Evapotranspiration (EVT) and Drain (DRN) Packages. The report describes conceptualization of the packages, input instructions, listings and explanations of the source code, and example simulations. The new Evapotranspiration Segments (ETS1) Package allows simulation of evapotranspiration with a user-defined relation between evapotranspiration rate and hydraulic head. This capability provides a degree of flexibility not supported by the EVT Package, which has been available in MODFLOW since its initial release. In the ETS1 Package, the relation of evapotranspiration rate to hydraulic head is conceptualized as a segmented line between an evaporation surface, defined as the elevation where the evapotranspiration rate reaches a maximum, and an elevation located at an extinction depth below the evaporation surface, where the evapotranspiration rate reaches zero. The user supplies input to define as many intermediate segment endpoints as desired to define the relation of evapotranspiration rate to head between these two elevations. The EVT Package, in contrast, simulates evapotranspiration with a single linear function. The new Drain Return (DRT1) Package can be used to simulate the return flow of water discharged from a drain feature back into the ground-water system. The DRN Package, which has been available in MODFLOW since its initial release, does not have the capability to simulate return of flow. If the return-flow option of the DRT1 Package is selected, for each cell designated as a drain-return cell, the user has the option of specifying a proportion of the water simulated as leaving the ground-water system through the drain feature that is to be simulated as returning simultaneously to one other cell in the model.

Open-File Report↗

Simulation of ground water flow in the Glaciofluvial, Saginaw, Parma-Bayport, and Marshall Aquifers, Central Lower Peninsula of Michigan

A steady-state finite difference model was developed to simulate ground-water flow in four regional aquifers in Michigan’s Lower Peninsula. The Glaciofluvial, Saginaw, Parma-Bayport, and Marshall aquifers were simulated as layers 1 through 4, respectively, in the model. Separately calculated vertical conductances input to the model were used to simulate the intervening Till/“Red Beds”, Saginaw, and Michigan confining units, respectively. The model domain was laterally bound by a continuous specifiedhead boundary, formed from Lakes Michigan, Huron, St. Clair, and Erie, together with the St. Clair and Detroit River connecting channels. The model was developed to quantify regional ground-water flow in the aquifer systems using independently determined recharge estimates. The flow model showed that groundwater heads and flows in the Glaciofluvial aquifer are controlled by local stream stages and discharges, resulting in localized flow cells accounting for 95-percent of the overall model water budget. Simulation of recharge to an unspecified water table also enabled the estimation of ground-water discharge to three Great Lakes. A computer diskette contains all MODFLOW and MODFLOWP input files, as well as digital model surfaces and several Fortran processing routines used to construct the surfaces. The diskette also provides the data used for calibration and sensitivity analysis.

Michigan↗

Creating a standardized watersheds database for the lower Rio Grande/Rio Bravo, Texas

This report describes the creation of a large-scale watershed database for the lower Rio Grande/Rio Bravo Basin in Texas. The watershed database includes watersheds delineated to all 1:24,000-scale mapped stream confluences and other hydrologically significant points, selected watershed characteristics, and hydrologic derivative datasets. Computer technology allows generation of preliminary watershed boundaries in a fraction of the time needed for manual methods. This automated process reduces development time and results in quality improvements in watershed boundaries and characteristics. These data can then be compiled in a permanent database, eliminating the time-consuming step of data creation at the beginning of a project and providing a stable base dataset that can give users greater confidence when further subdividing watersheds. A standardized dataset of watershed characteristics is a valuable contribution to the understanding and management of natural resources. Vertical integration of the input datasets used to automatically generate watershed boundaries is crucial to the success of such an effort. The optimum situation would be to use the digital orthophoto quadrangles as the source of all the input datasets. While the hydrographic data from the digital line graphs can be revised to match the digital orthophoto quadrangles, hypsography data cannot be revised to match the digital orthophoto quadrangles. Revised hydrography from the digital orthophoto quadrangle should be used to create an updated digital elevation model that incorporates the stream channels as revised from the digital orthophoto quadrangle. Computer-generated, standardized watersheds that are vertically integrated with existing digital line graph hydrographic data will continue to be difficult to create until revisions can be made to existing source datasets. Until such time, manual editing will be necessary to make adjustments for man-made features and changes in the natural landscape that are not reflected in the digital elevation model data.

Texas↗

Geochemistry of sulfur in the Florida Everglades: 1994 through 1999

In this report, we present data on the geochemistry of sulfur in sediments and in surface water, groundwater, and rainwater in the Everglades region in south Florida. The results presented here are part of a larger study intended to determine the roles played by the cycling of carbon, nitrogen, phosphorus, and sulfur in the ecology of the south Florida wetlands. The geochemistry of sulfur in the region is particularly important because of its link to the production of toxic methylmercury through processes mediated by sulfate reducing bacteria. Sediment cores were collected from the Everglades Agricultural Area (EAA), Water Conservation Areas (WCAs) 1A and 2A, from Lake Okeechobee, and from Taylor Slough in the southern Everglades. Water collection was more widespread and includes surface water from WCAs 1A, 2A, 3A, 2B, the EAA, Taylor Slough, Lake Okeechobee, and the Kissimmee River. Groundwater was collected from The Everglades Nutrient Removal Area (ENR) and from WCA 2A. Rainwater was collected at two month intervals over a period of one year from the ENR and from WCA 2A. Water was analyzed for sulfate concentration and sulfate sulfur stable isotopic ratio (34S/32S). Sediment cores were analyzed for total sulfur concentration and/or for concentrations of sulfur species (sulfate, organic sulfur, disulfides, and acid volatile sulfides (AVS)) and for their stable sulfur isotopic ratio. Results show a decrease in total sulfur content (1.57 to 0.61 percent dry weight) with depth in two sediment cores collected in WCA 2A, indicating that there has been an increase in total sulfur content in recent times. A sediment core from the center of Lake Okeechobee shows a decrease in total sulfur content with depth (0.28 to 0.08 percent dry weight). A core from the periphery of the lake (South Bay) likewise shows a decrease in total sulfur content with depth (1.00 to 0.69 percent dry weight), however, the overall sulfur content is greater than that near the center at all depths. This suggests input of sulfur in recent times, especially near the lake margins. Sediments show a general decrease in sulfur concentration with depth, probably because of increases in sulfur input to the marshes in recent times. Regional differences in the concentrations and stable isotopic ratios of sulfate sulfur in surface water show that sulfur contamination to the northern Everglades likely originates from canals draining the EAA.

Florida↗

MODFLOW-2000, the U.S. Geological Survey modular ground-water model: User guide to the LMT6 package, the linkage with MT3DMS for multi-species mass transport modeling

MODFLOW-2000, the newest version of MODFLOW, is a computer program that numerically solves the three-dimensional ground-water flow equation for a porous medium using a finite-difference method. MT3DMS, the successor to MT3D, is a computer program for modeling multi-species solute transport in three-dimensional ground-water systems using multiple solution techniques, including the finite-difference method, the method of characteristics (MOC), and the total-variation-diminishing (TVD) method. This report documents a new version of the Link-MT3DMS Package, which enables MODFLOW-2000 to produce the information needed by MT3DMS, and also discusses new visualization software for MT3DMS. Unlike the Link-MT3D Packages that coordinated previous versions of MODFLOW and MT3D, the new Link-MT3DMS Package requires an input file that, among other things, provides enhanced support for additional MODFLOW sink/source packages and allows list-directed (free) format for the flow model produced flow-transport link file. The report contains four parts: (a) documentation of the Link-MT3DMS Package Version 6 for MODFLOW-2000; (b) discussion of several issues related to simulation setup and input data preparation for running MT3DMS with MODFLOW-2000; (c) description of two test example problems, with comparison to results obtained using another MODFLOW-based transport program; and (d) overview of post-simulation visualization and animation using the U.S. Geological Survey?s Model Viewer.

Open-File Report↗

Abstracts of the annual Planetary Geologic Mappers Meeting, June 18-19, 2001, Albuquerque, New Mexico

The annual Planetary Geologic Mappers Meeting serves two purposes. In addition to giving mappers the opportunity to exchange ideas, experiences, victories, and problems with others, presentations are reviewed by the Geologic Mapping Subcommittee (GeMS) to provide input to the Planetary Geology and Geophysics Mapping Program review panel’s consideration of new proposals and progress reports that include mapping tasks. Funded mappers bring both oral presentation materials (slides or viewgraphs) and map products to post for review by GeMS and fellow mappers. Additionally, the annual meetings typically feature optional field trips offering earth analogs and parallels to planetary mapping problems. The 2001 Mappers Meeting, June 18-19, was convened by Tim Parker, Dave Senske, and Ken Tanaka and was hosted by Larry Crumpler and Jayne Aubele of the New Mexico Museum of Natural History and Science in Albuquerque, New Mexico. Oral presentations were given in the Museum’s Honeywell Auditorium, and maps were posted in the Sandia Room. In addition to active mappers, guests included local science teachers who had successfully competed for the right to attend and listen to the reports. It was a unique pleasure for mappers to have the opportunity to interact with and provide information to teachers responding so enthusiastically to the meeting presentation. On Sunday, June 17, Larry and Jayne conducted an optional pre-meeting field trip. The flanks of Rio Grande Rift, east and west of Albuquerque and Valles Caldera north of town presented tectonic, volcanic, and sedimentary examples of the Rift and adjoining areas analogous to observed features on Mars and Venus. The arid but volcanically and tectonically active environment of New Mexico’s rift valley enables focus on features that appear morphologically young and spectacular in satellite images and digital relief models. The theme of the trip was to see what, at orbiter resolution, "obvious" geologic features look like at lander (outcrop) scales. Trips to the top of the rift-flanking mountains (Sandia Peak, 10,600 ft) and the Valles Caldera, as well as various active spring deposits highlighted the day. After welcoming remarks from the host, Larry Crumpler, opening remarks by Tim Parker and Dave Senske and a report on mapping program status by Ken Tanaka, the mappers’ oral presentations began the morning of June 18, with a session on Venus Geologic Mapping. The afternoon continued with an exciting USGS Planetary GIS on the Web (PIGWAD) demonstration and ended with an open discussion of issues in planetary mapping. Posted maps of Venus quadrangles were viewed during the morning break. Tuesday’s Mars Geologic Mapping session began with a pep talk from Tim Parker encouraging mapping community input to the MER landing site selection committee and continued with Steve Saunders describing the potential contribution of Odyssey Mission data to the geologic mapping of Mars. A Mars map poster session was held during the morning break, and the meeting was adjourned mid-afternoon. After the mappers meeting on Tuesday, attendants were treated to a "Field trip to Mars." The Institute of Meteoritics at the University of New Mexico houses an outstanding collection of meteorites, including those that have been identified as originating from Mars. The Institute tour featured examples of most of the different lithologies exhibited by martian meteorites identified to date, as well as some of the analytical tests (scanning electron microscope) they are conducting on specimens from ALH84001. Wednesday, June 20, featured an optional post-meeting field trip to see a travertine quarry and nearby sites of travertine deposition, the Very Large Array near Socorro, and other volcanic features within the Rio Grande Rift.

New Mexico↗

MODFLOW-2000, the U.S. Geological Survey modular ground-water model -- Documentation of MOD-PREDICT for predictions, prediction sensitivity analysis, and evaluation of uncertainty

This document describes the MOD-PREDICT program, which helps evaluate userdefined sets of observations, prior information, and predictions, using the ground-water model MODFLOW-2000. MOD-PREDICT takes advantage of the existing Observation and Sensitivity Processes (Hill and others, 2000) by initiating runs of MODFLOW-2000 and using the output files produced. The names and formats of the MODFLOW-2000 input files are unchanged, such that full backward compatibility is maintained. A new name file and input files are required for MOD-PREDICT. The performance of MOD-PREDICT has been tested in a variety of applications. Future applications, however, might reveal errors that were not detected in the test simulations. Users are requested to notify the U.S. Geological Survey of any errors found in this document or the computer program using the email address available at the web address below. Updates might occasionally be made to this document, to the MOD-PREDICT program, and to MODFLOW- 2000. Users can check for updates on the Internet at URL http://water.usgs.gov/software/ground water.html/.

Open-File Report↗

Binational digital soils map of the Ambos Nogales watershed, southern Arizona and northern Sonora, Mexico

We have prepared a digital map of soil parameters for the international Ambos Nogales watershed to use as input for selected soils-erosion models. The Ambos Nogales watershed in southern Arizona and northern Sonora, Mexico, contains the Nogales wash, a tributary of the Upper Santa Cruz River. The watershed covers an area of 235 km2, just under half of which is in Mexico. Preliminary investigations of potential erosion revealed a discrepancy in soils data and mapping across the United States-Mexican border due to issues including different mapping resolutions, incompatible formatting, and varying nomenclature and classification systems. To prepare a digital soils map appropriate for input to a soils-erosion model, the historical analog soils maps for Nogales, Ariz., were scanned and merged with the larger-scale digital soils data available for Nogales, Sonora, Mexico using a geographic information system.

Arizona, Sonora↗

The New Hampshire watershed tool: a geographic information system tool to estimate streamflow statistics and ground-water-recharge rates

Estimates of low-flow statistics, flow durations, and ground-water-recharge rates are needed to assist water-resource managers in assessing surface-water resources and ground-water availability. Often these estimates are required at ungaged sites where no observed streamflow data are available for analysis. Regression equations for estimating low-flow statistics and flow durations, and for estimating ground-water-recharge rates at ungaged sites have been developed for New Hampshire. However, use of these equations requires numerous input parameters, such as basin and climatic characteristics. This report describes a customized geographic information system (GIS) application, the New Hampshire Watershed Tool, that automates the measurement of the characteristics used for input to the regression equations and calculates the corresponding flow statistics and ground-water-recharge rates.

Open-File Report↗

Evaluation of unsaturated-zone solute-transport models for studies of agricultural chemicals

Seven unsaturated-zone solute-transport models were tested with two data sets to select models for use by the Agricultural Chemical Team of the U.S. Geological Survey's National Water-Quality Assessment Program. The data sets were from a bromide tracer test near Merced, California, and an atrazine study in the White River Basin, Indiana. In this study the models are designated either as complex or simple based on the water flux algorithm. The complex models, HYDRUS2D, LEACHP, RZWQM, and VS2DT, use Richards' equation to simulate water flux and are well suited to process understanding. The simple models, CALF, GLEAMS, and PRZM, use a tipping-bucket algorithm and are more amenable to extrapolation because they require fewer input parameters. The purpose of this report is not to endorse a particular model, but to describe useful features, potential capabilities, and possible limitations that emerged from working with the model input data sets. More rigorous assessment of model applicability involves proper calibration, which was beyond the scope of this study. Uncalibrated ("cold") simulations were run using all seven models to predict the transport of bromide (Merced) and the transport and fate of atrazine and three of its transformation products (White River Basin). Among the complex models, HYDRUS2D successfully predicted both the surface retention and accumulation of bromide at depth at the Merced site, whereas RZWQM and VS2DT predicted only the latter. RZWQM predictions of atrazine were closest to observed values at the White River Basin site, where preferential flow has been observed. LEACHP predicted smaller solute concentrations than observed at both the Merced and White River Basin sites. Among the simple models, CALF predicted the highest values of atrazine and deethylatrazine at the measurement depth of 1.5 meters. CALF includes the Addiscott flow option for preferential flow, and also accepts user-specified dispersivity. PRZM underpredicted solute concentrations, probably because control of dispersion is a problem with this model. GLEAMS has a maximum simulation depth of 1.5 meters, which is limiting for mass-balance purposes because it creates a potential disconnect between unsaturated-zone transport and the water table. Of the models tested, RZWQM, HYDRUS2D, VS2DT, GLEAMS and PRZM had graphical user interfaces. Extensive documentation was available for RZWQM, HYDRUS2D, and VS2DT. RZWQM can explicitly simulate water and solute flux in macropores, and both HYDRUS2D and VS2DT can simulate water and solute flux in two dimensions. The version of RZWQM tested had a maximum simulation depth of 3 meters. The complex models simulate the formation, transport, and fate of degradates of up to three to five compounds including the parent, with the exception of VS2DT, which simulates the transport and fate of a single compound.

California, Indiana↗

Petroleum system modeling capabilities for use in oil and gas resource assessments

Summary: Petroleum resource assessments are among the most highly visible and frequently cited scientific products of the U.S. Geological Survey. The assessments integrate diverse and extensive information on the geologic, geochemical, and petroleum production histories of provinces and regions of the United States and the World. Petroleum systems modeling incorporates these geoscience data in ways that strengthen the assessment process and results are presented visually and numerically. The purpose of this report is to outline the requirements, advantages, and limitations of one-dimensional (1-D), two-dimensional (2-D), and three-dimensional (3-D) petroleum systems modeling that can be applied to the assessment of oil and gas resources. Primary focus is on the application of the Integrated Exploration Systems (IES) PetroMod? software because of familiarity with that program as well as the emphasis by the USGS Energy Program on standardizing to one modeling application. The Western Canada Sedimentary Basin (WCSB) is used to demonstrate the use of the PetroMod? software. Petroleum systems modeling quantitatively extends the 'total petroleum systems' (TPS) concept (Magoon and Dow, 1994; Magoon and Schmoker, 2000) that is employed in USGS resource assessments. Modeling allows integration of state-of-the-art analysis techniques, and provides the means to test and refine understanding of oil and gas generation, migration, and accumulation. Results of modeling are presented visually, numerically, and statistically, which enhances interpretation of the processes that affect TPSs through time. Modeling also provides a framework for the input and processing of many kinds of data essential in resource assessment, including (1) petroleum system elements such as reservoir, seal, and source rock intervals; (2) timing of depositional, hiatus, and erosional events and their influences on petroleum systems; (3) incorporation of vertical and lateral distribution and lithologies of strata that compose the petroleum systems; and (4) calculations of pressure-volume-temperature (PVT) histories. As digital data on petroleum systems continue to expand, the models can integrate these data into USGS resource assessments by building and displaying, through time, areas of petroleum generation, migration pathways, accumulations, and relative contributions of source rocks to the hydrocarbon components. IES PetroMod? 1-D, 2-D, and 3-D models are integrated such that each uses the same variables for petroleum systems modeling. 1-D burial history models are point locations, mainly wells. Maps and cross-sections model geologic information in two dimensions and can incorporate direct input of 2-D seismic data and interpretations using various formats. Both 1-D and 2-D models use data essential for assessments and, following data compilation, they can be completed in hours and retested in minutes. Such models should be built early in the geologic assessment process, inasmuch as they incorporate the petroleum system elements of reservoir, source, and seal rock intervals with associated lithologies and depositional and erosional ages. The models can be used to delineate the petroleum systems. A number of 1-D and 2-D models can be constructed across a geologic province and used by the assessment geologists as a 3-D framework of processes that control petroleum generation, migration, and accumulation. The primary limitation of these models is that they only represent generation, migration, and accumulation in two dimensions. 3-D models are generally built at reservoir to basin scales. They provide a much more detailed and realistic representation of petroleum systems than 1-D or 2-D models because they portray more fully the temporal and physical relations among (1) burial history; (2) lithologies and associated changes through burial in porosity, permeability, and compaction; (3) hydrodynamic effects; and (4) other parameters that influence petroleum gen

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Development of the water-analysis screening tool used in the initial screening for the Pennsylvania State Water Plan update of 2008

The Water Resources Planning Act, Act 220 of 2002, requires the Pennsylvania Department of Environmental Protection (PaDEP) to update the State Water Plan by 2008. As part of this update, a water-analysis screening tool (WAST) was developed by the U.S. Geological Survey, in cooperation with the PaDEP, to provide assistance to the state in the identification of critical water-planning areas. The WAST has two primary inputs: net withdrawals and the initial screening criteria. A comprehensive water-use database that includes data from registration, estimation, discharge monitoring reports, mining data, and other sources was developed as input into the WAST. Water use in the following categories was estimated using water-use factors: residential, industrial, commercial, agriculture, and golf courses. A percentage of the 7-day, 10-year low flow is used for the initial screenings using the WAST to identify potential critical water-planning areas. This quantity, or initial screening criteria, is 50 percent of the 7-day, 10-year low flow for most streams. Using a basic water-balance equation, a screening indicator is calculated that indicates the potential influences of net withdrawals on aquatic-resource uses for watersheds generally larger than 15 square miles. Points representing outlets of these watersheds are colored-coded within the WAST to show the screening criteria for each watershed.

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