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USGS2017

Advancing mangrove macroecology

Mangrove forests provide a wide range of ecosystem services to society, yet they are among the most anthropogenically impacted coastal ecosystems in the world. In this chapter, we discuss and provide examples for how macroecology can advance our understanding of mangrove ecosystems. Macroecology is broadly defined as a discipline that uses statistical analyses to investigate large-scale, universal patterns in the distribution, abundance, diversity, and organization of species and ecosystems, including the scaling of ecological processes and structural and functional relationships. Macroecological methods can be used to advance our understanding of how non-linear responses in natural systems can be triggered by human impacts at local, regional, and global scales. Although macroecology has the potential to gain knowledge on universal patterns and processes that govern mangrove ecosystems, the application of macroecological methods to mangroves has historically been limited by constraints in data quality and availability. Here we provide examples that include evaluations of the variation in mangrove forest ecosystem structure and function in relation to macroclimatic drivers (e.g., temperature and rainfall regimes) and climate change. Additional examples include work focused upon the continental distribution of aboveground net primary productivity and carbon storage, which are rapidly advancing research areas. These examples demonstrate the value of a macroecological perspective for the understanding of global- and regional-scale effects of both changing environmental conditions and management actions on ecosystem structure, function, and the supply of goods and services. We also present current trends in mangrove modeling approaches and their potential utility to test hypotheses about mangrove structural and functional properties. Given the gap in relevant experimental work at the regional scale, we also discuss the potential use of mangrove restoration and rehabilitation projects as macroecological studies that advance the critical selection and conservation of ecosystem services when managing mangrove resources. Future work to further incorporate macroecology into mangrove research will require a concerted effort by research groups and institutions to launch research initiatives and synthesize data collected across broad biogeographic regions.

Book chapter↗

USGS2006

Research approach to teaching groundwater biodegradation in karst aquifers

TSU in partnership with the USGS has conducted extensive research regarding biode??gradation of contaminants in karst aquifers. This research resulted in the development of a numerical approach to modeling biodegradation of contaminants in karst aquifers that is taught to environmental engineering students in several steps. First, environmental engineering students are taught chemical-reaction engineering principles relating to a wide variety of environmental fate and transport issues. Second, as part of TSU's engineering course curriculum, students use a non-ideal flow laboratory reactor system and run a tracer study to establish residence time distribution (RTD). Next, the students couple that formula to a first-order biodegradation rate and predict the removal of a biodegradable contaminant as a function of residence time. Following this, students are shown data collected from karst bedrock wells that suggest that karst aquifers are analogous to non-ideal flow reactors. The students are challenged to develop rates of biodegradation through lab studies and use their results to predict biodegradaton at an actual contaminated karst site. Field studies are also conducted to determine the accuracy of the students' predictions. This academic approach teaches biodegradation processes, rate-kinetic processes, hydraulic processes and numerical principles. The students are able to experience how chemical engineering principles can be applied to other situations, such as, modeling biodegradation of contaminants in karst aquifers. This paper provides background on the chemical engineering principles and karst issues used in the research-enhanced curriculum. ?? American Society for Engineering Education, 2006.

Conference Paper↗

USGS2011

Environmental contaminants in biota: Interpreting tissue concentrations

Discussing the interpretation of tissue concentrations of contaminants in wildlife, this updated edition of a bestseller draws on current scientific research and includes new chapters and greater emphasis on aquatic organisms. Each chapter provides a summary and review of a specific chemical along with direction on research methods and the interpretation of conflicting or insufficient data. Chapters include a comprehensive history of contaminant interpretation in wildlife and fish, the use of tissue residues in ecological risk assessment, and detailed coverage of all bioaccumulative contaminants and their physiologic affects.

Book↗

USGS2022

Potential effects of energy development on environmental resources of the Williston Basin in Montana, North Dakota, and South Dakota—Water resources

The Williston Basin has been a leading oil and gas producing area for more than 50 years. While oil production initially peaked within the Williston Basin in the mid-1980s, production rapidly increased in the mid-2000s, largely because of improved horizontal (directional) drilling and hydraulic fracturing methods. In 2012, energy development associated with the Bakken Formation was identified as a priority requiring collaboration toward improved timeliness of issuing permits for new wells combined with reasonable measures to maintain environmental quality. Shortly thereafter, the Bakken Federal Executive Group was created to address common challenges associated with energy development. The Bakken Federal Executive Group partner agencies identified a gap in current understanding of the cumulative environmental challenges attributed to energy development throughout the area, resulting in an effort to aggregate scientific data and identify additional research and information needs related to natural resources within areas of energy development in the Williston Basin. As part of this effort, water resources in the area (including groundwater; streams and rivers; and lakes, reservoirs, and wetlands) were characterized and described in terms of physical occurrence, flow characteristics, recharge, water quality, and water use. Similarly, waters produced during energy-development activities also were characterized even though these waters are not considered usable resources within the area. Groundwater resources were characterized by the major hydrogeologic units, or aquifers, identifying the units that supply most groundwater used for domestic, stock, agricultural, and industrial purposes. The groundwater characterization included other deeper hydrogeologic units in the Williston Basin that may be a useable source of water with treatment, have utility as a reservoir for reinjection of produced waters, or be a source of minerals and energy resources. A generalized groundwater budget and flow system identifying the sources of recharge (stream infiltration, precipitation, and movement [leakage] from other aquifers) and the general groundwater flow direction is included for each of the major hydrogeologic units. Rivers and streams within the Williston Basin with 10 or more years of continuous streamflow data were identified. For a subset of these sites, streamflow characteristics, including the monthly and annual mean flow, were generated to identify seasonal and interannual changes in streamflow and thus provide information on the drivers and reliability of streamflow at the seasonal or multiyear scale. Daily streamflow and annual extreme flows (peak and low flow) also were estimated for the subset of sites. The daily streamflow and annual extreme flow values provide information on short-term or extreme events that are relevant to infrastructure design and evaluating spills, leaks, or accidental discharges of water or petroleum products. Surface-water features (lakes, ponds, and wetlands) were classified using the Cowardin system and identified on the National Wetlands Inventory maps generated by the U.S. Fish and Wildlife Service. The spatial distribution of the surface-water features was analyzed by State, county, and specifically in comparison to the Prairie Pothole Region. The proximity of the surface-water features to energy development infrastructure (specifically oil or gas well pads) was evaluated. It was determined that, although oil or gas wells are often near a surface-water feature, most surface-water features do not have wells nearby, with the exception of wells in the Prairie Pothole Region. Water-quality data were aggregated from two data sources: (1) the Water-Quality Portal, sponsored by the U.S. Geological Survey (USGS), U.S. Environmental Protection Agency (EPA), and National Water Quality Monitoring Council; and (2) a data compilation completed as part of the USGS National Water-Quality Assessment project. The Water-Quality Portal integrates publicly available water-quality data from databases maintained by the USGS, EPA, and U.S. Department of Agriculture, including water-quality data from Tribal, State, and local databases. Water-quality data for 15 commonly measured water-quality constituents were aggregated for groundwater, rivers and streams, and lakes and reservoirs. For each aggregated dataset (groundwater, rivers and streams, and lakes and reservoirs), analyses of the water-quality data included summary statistics, maps of spatial distribution of constituent values, boxplots of constituent values by timeframe or hydrogeologic unit, spatial comparisons of site locations and constituent values to petroleum well density, and comparisons of the constituent values measured to EPA drinking-water standards/guidelines. Produced water includes all fluids brought to the surface along with the targeted hydrocarbons as part of the oil and gas exploration and extraction processes. These fluids may include formation water (waters that co-exist with rock/oil/gas), hydraulic fracturing fluids, and other combinations of water and chemicals used during oil and gas well drilling, development, treatments, recompletions, and workovers. Produced water datasets were aggregated from two sources: the USGS National Produced Waters Geochemical database (ver. 2.1) and a series of projects focused specifically on sampling produced water in the Williston Basin from 2010 to 2014. The National Produced Waters Geochemical database was useful for a general understanding of produced-water chemistry. Produced waters are characterized by extreme salinity and contain elevated concentrations of other constituents (including arsenic, barium, cadmium, lead, zinc, radium-226/radium-228, and ammonium) that could negatively affect water and aquatic resources if released. Produced waters also have a generally unique chemical (isotopic) signature that may be useful in tracking water from different geologic units; for example, the oxygen/deuterium and strontium ratio values measured in brine waters from the Bakken Formation are distinct from brines collected from other geologic units in the Williston Basin. Water-use information related to energy production in the area also was aggregated and summarized. The summary of water use is not limited to oil and gas production but includes water used to produce all types of energy resources in the Williston Basin, including coal/lignite, thermoelectric power, oil and gas, hydropower, biomass and biofuels, wind, geothermal, and solar. Each State has its own methods for regulating and reporting water usage within its jurisdiction. These methods can introduce problems when examining water use from sources, such as the Missouri River or Fox Hills aquifer, that are shared across political boundaries. Without the one-to-one match for usage types and amounts used from a water source, it is difficult to develop a comprehensive water budget for the water source being evaluated. A large amount of freshwater is required to prepare a well for oil and gas well production; in some cases, 3 to 7 million gallons of water are needed per well. The EPA estimates that hydraulic fracturing in the Williston Basin uses between 70 to 140 billion gallons per year. Water also is used for myriad other purposes related to ancillary oil and gas extraction. In addition to water used for immediate energy development, the expanded human workforce migrating into the area and other support staff who have moved into the area during the development also use water. Research and information needs were identified that could be relevant in the evaluation of the effects of energy development on water resources. Information needs related to the evaluation of groundwater resources include the following: improved potentiometric-surface maps for glacial units; availability of a uniform stream network digital geographic coverage that spans the international boundary with Canada; enhanced surface-water use information with regards to the gain and loss of streamflow to shallow groundwater, which would increase understanding groundwater and surface-water interactions; and expanded geophysical assessments. Gaps in the availability of streamflow data include the lack of information on ice-jam flooding despite potential for effects to infrastructure (pipelines, roads, and facilities) and an understanding of the cumulative effects of largely undocumented stock and diversion dams. Although this study resulted in the aggregation of a large quantity of water-quality data, the availability of consistently collected, systematically processed and reported data over large parts of the Williston Basin is sparse. Few samples have been analyzed for constituents that may indicate the effect of energy development on water resources. Constituents that could be considered include boron, chloride, bromide, iodine, fluoride, manganese, lithium, radium, strontium isotopes, volatile organic compounds, and isotopes of inorganic ions (such as hydrogen and carbon). Collaboration between Tribal, Federal, State, and local entities to identify a common study design, common monitoring constituents, and consistent sampling locations would generate datasets with broad utility and would likely result in overall cost savings for monitoring over time. Similarly, there is a need for standardized sample collection, processing, laboratory analytical methods, and the collection of ancillary data for produced waters sampling. Additional characterization of the range of chemical, microbial, and isotopic compositions and quantities of “end-member” produced waters, and the collection of time-series datasets to document the changes in produced waters during and after well development also were needs identified during this study. Water-use estimates would be improved through the implementation of comprehensive studies of water use from groundwater and surface-water sources using consistent methodologies across the Williston Basin. The submission of chemical and water data related to hydraulic fracturing collected by the oil and gas industry would add to the quantity of available data. Consistent implementation of regulations and monitoring controls across political boundaries (State, county, and international) would further improve the consistency of data available for the estimates of water use.

Montana, North Dakota, South Dakota↗

USGS2005

The seasonal cycle of diabatic heat storage in the Pacific Ocean

This study quantifies uncertainties in closing the seasonal cycle of diabatic heat storage (DHS) over the Pacific Ocean from 20??S to 60??N through the synthesis of World Ocean Circulation Experiment (WOCE) reanalysis products from 1993 to 1999. These products are DHS from Scripps Institution of Oceanography (SIO); near-surface geostrophic and Ekman currents from Earth and Space Research (ESR); and air-sea heat fluxes from Comprehensive Ocean-Atmosphere Data Set (COADS), National Centers for Environmental Prediction (NCEP), and European Center for Mid-Range Weather Forecasts (ECMWF). With these products, we compute residual heat budget components by differencing long-term monthly means from the long-term annual mean. This allows the seasonal cycle of the DHS tendency to be modeled. Everywhere latent heat flux residuals dominate sensible heat flux residuals, shortwave heat flux residuals dominate longwave heat flux residuals, and residual Ekman heat advection dominates residual geostrophic heat advection, with residual dissipation significant only in the Kuroshio-Oyashio current extension. The root-mean-square (RMS) of the differences between observed and model residual DHS tendencies (averaged over 10??latitude-by-20??longitude boxes) is <20 W m-2 in the interior ocean and <100 W m-2 in the Kuroshio-Oyashio current extension. This reveals that the residual DHS tendency is driven everywhere by some mix of residual latent heat flux, shortwave heat flux, and Ekman heat advection. Suppressing bias errors in residual air-sea turbulent heat fluxes and Ekman heat advection through minimization of the RMS differences reduces the latter to <10 W m-2 over the interior ocean and <25 W m -2 in the Kuroshio-Oyashio current extension. This reveals air-sea temperature and specific humidity differences from in situ surface marine weather observations to be a principal source of bias error, overestimated over most of ocean but underestimated near the Intertropical Convergence Zone. ?? 2005 Elsevier Ltd. All rights reserved.

Progress in Oceanography↗

USGS2023

Biocrusts indicators of livestock grazing effects on soil stability in sagebrush steppe: A case study from a long-term experiment in the northern Great Basin

Biocrusts are sensitive to changes in livestock grazing intensity in arid rangelands and may be useful indicators of ecosystem functions, particularly soil properties like soil stability, which may suggest the potential for soil erosion. We compared biocrust community composition and surface soil stability in a big sagebrush (Artemisia tridentata) steppe rangeland in the northwestern Great Basin in several paired sites, with or without long-term cattle grazing exclusion, and similar soils (mostly sandy loams), climate, and vegetation composition. We found that livestock grazing was associated with both lower surface soil stability and cover of several biocrust morphogroups, especially lichens, compared with sites with long-term livestock exclusion. Surface soil stability did not modify the effects of grazing on most biocrust components via interactive effects. Livestock grazing effects on total biocrust cover were partially mediated by changes in surface soil stability. Though lichens were more sensitive to grazing disturbance, our results suggest that moss (mostly Tortula ruralis in this site) might be a more readily observable indicator of grazing-related soil stability change in this area due to their relatively higher abundance compared with lichens (moss: mean, 8.5% cover, maximum, 96.1%, lichens: mean, 1.0% cover, maximum, 14.1%). These results highlight the potential for biocrust components as sensitive indicators of change in soil-related ecosystem functions in sagebrush steppe rangelands. However, further research is needed to identify relevant indicator groups across the wide range of biocrust community composition associated with site environmental characteristics, variable grazing systems, other rangeland health metrics, and other disturbance types such as wildfire.

Northern Great Basin↗

USGS2022

A review of supervised learning methods for classifying animal behavioural states from environmental features

Accurately predicting behavioural modes of animals in response to environmental features is important for ecology and conservation. Supervised learning (SL) methods are increasingly common in animal movement ecology for classifying behavioural modes. However, few examples exist of applying SL to classify polytomous animal behaviour from environmental features especially in the context of millions of animal observations. We review SL methods (weighted k -nearest neighbours; neural nets; random forests; and boosted classification trees with XGBoost) for classifying polytomous animal behaviour from environmental predictors. We also describe tuning parameter selection and assessment strategies, approaches for visualizing relationships between predictors and class outputs, and computational considerations. We demonstrate these methods by predicting three categories of risk to bald eagles from colliding with wind turbines using, as predictors, 12 environmental state features associated with 1.7 million GPS telemetry data points from 57 eagles. Of the SL methods we considered, XGBoost yielded the most accurate model with 86.2% classification accuracy and pairwise-averaged area under the ROC curve of 90.6. Computational time of XGBoost scaled better to large data than any other SL method. We also show how SHAP values integrated in the R package ( xgboost ) facilitate investigation of variable relationships and importance. For big data applications, XGBoost appears to provide superior classification accuracy and computational efficiency. Our results suggest XGBoost should be considered as an early modelling option in situations where the intent is to classify millions of animal behaviour observations from environmental predictors and to understand relationships between those predictors and movement behaviours. We also offer a tutorial to assist researchers in implementing this method.

Methods in Ecology and Evolution↗

USGS2003

Geographic analysis and monitoring at the United States Geological Survey

The Geographic Analysis and Monitoring (GAM) Program of the U.S. Geological Survey assesses the Nation's land surface at a variety of spatial and temporal scales to understand the rates, causes, and consequences of natural and human-induced processes and their interactions that affect the landscape over time. The program plays an important role in developing National Map tools and application. The GAM is a science and synthesis program that not only assesses the rates of changes to the Earth's land surface, but also provides reports on the status and trends of the Nation's land resources on a periodic basis, produces a land-use and land- cover database for the periodically updated map and data set-the Geographic Face of the Nation, and conducts research leading to improved understanding and knowledge about geographic processes. Scientific investigations provide comprehensive information needed to understand the environmental, resource, and economic consequences of landscape change. These analyses responds to the needs of resource managers and offers the American public baseline information to help them understand the dynamic nature of our national landscape and to anticipate the opportunities and consequences of our actions.

Cartography and Geographic Information Science↗

USGS2008

Specific conductance in the Colorado River between Glen Canyon Dam and Diamond Creek, Northern Arizona, 1988-2007

The construction of Glen Canyon Dam, completed in 1963, resulted in substantial physical and biological changes to downstream Colorado River environments between Lake Powell and Lake Mead - an area almost entirely within Grand Canyon National Park, Ariz. In an effort to understand these changes, data have been collected to assess the condition of a number of downstream resources. In terms of measuring water quality, the collection of specific-conductance data is a cost-effective method for estimating salinity. Data-collection activities were initially undertaken by the Bureau of Reclamation's Glen Canyon Environmental Studies (1982-96); these efforts were subsequently transferred to the U.S. Geological Survey's Grand Canyon Monitoring and Research Center (1996 to the present). This report describes the specific-conductance dataset collected for the Colorado River between Glen Canyon Dam and Diamond Creek from 1988 to 2007. Data-collection and processing methods used during the study period are described, and time-series plots of the data are presented. The report also includes plots showing the relation between specific conductance and total dissolved solids. Examples of the use of specific conductance as a natural tracer of parcels of water are presented. Analysis of the data indicates that short-duration spikes and troughs in specific-conductance values lasting from hours to days are primarily the result of flooding in the Paria and Little Colorado Rivers, Colorado River tributaries below Glen Canyon Dam. Specific conductance also exhibits seasonal variations owing to changes in the position of density layers within the reservoir; these changes are driven by inflow hydrology, meteorological conditions, and background stratification. Longer term trends in Colorado River specific conductance are reflective of climatological conditions in the upper Colorado River Basin. For example, drought conditions generally result in an increase in specific conductance in Lake Powell. Therefore, the average annual specific conductance below Glen Canyon Dam is inversely related to the volume of water in Lake Powell.

Arizona↗

USGS1998

Monitoring of Selected Water-Quality Constituents Near the Freshwater/Saline-Water Interface of the Edwards Aquifer, July 1996-December 1997

The Edwards aquifer is the sole source of water for about 1.3 million people in and near San Antonio, Texas, as well as for ranchers and farmers throughout south-central Texas. Because of the demand for this resource, various studies have been conducted to better understand the Edwards aquifer and how the aquifer reacts to environmental changes and human influences. In July 1996, the U.S. Geological Survey (USGS), in cooperation with the Edwards Aquifer Research and Data Center (EARDC) at Southwest Texas State University (SWTSU) and the Texas Water Development Board (TWDB), began a study to investigate possible changes in water quality of the Edwards aquifer near the freshwater/saline-water interface that might result if drought occurs. The continuing study is part of the USGS National WaterQuality Assessment (NAWQA) Program in south-central Texas. The freshwater/saline-water interface, known locally as the “bad-water line,” marks the beginning of the transition in the aquifer from freshwater (updip) to saline water (downdip). The interface is defined as the 1,000-milligram-per-liter (mg/L) line of equal dissolved solids concentration as delineated by Maclay and others (1980, fig. 7). Water in the freshwater zone of the Edwards aquifer tends to have dissolved solids concentrations of 250 to 300 mg/L (Pavlicek and others, 1987, p. 3). In contrast, water in the saline-water zone of the Edwards aquifer commonly has dissolved solids concentrations greater than 10,000 mg/L, and sample concentrations as large as 232,000 mg/L have been measured (Groschen and Buszka, 1997, p. 21).

Fact Sheet↗

USGS2012

Integrated monitoring of ecological conditions in wetland-upland landscapes

Landscapes of interwoven wetlands and uplands offer a rich set of ecosystem goods and services. Managing lands to maximize ecosystem services requires information that distinguishes change caused by local actions from broader-scale shifts in climate, land use, and other forms of global change. Satellite and airborne sensors collect valuable data for this purpose, especially when the data are analyzed along with data collected from ground-based sensors. The U.S. Geological Survey (USGS) is using remote sensing technology in this way as part of the Terrestrial Wetland Global Change Research Network to assess effects of climate change interacting with land-use change and other potential stressors along environmental gradients of wetland-upland landscapes in the United States and Canada.

Fact Sheet↗

USGS2014

Changing Arctic ecosystems: resilience of caribou to climatic shifts in the Arctic

The U.S. Geological Survey (USGS) Changing Arctic Ecosystems (CAE) initiative strives to inform key resource management decisions for Arctic Alaska by providing scientific information and forecasts for current and future ecosystem response to a warming climate. Over the past 5 years, a focal area for the USGS CAE initiative has been the North Slope of Alaska. This region has experienced a warming trend over the past 60 years, yet the rate of change has been varied across the North Slope, leading scientists to question the future response and resilience of wildlife populations, such as caribou ( Rangifer tarandus ), that rely on tundra habitats for forage. Future changes in temperature and precipitation to coastal wet sedge and upland low shrub tundra are expected, with unknown consequences for caribou that rely on these plant communities for food. Understanding how future environmental change may affect caribou migration, nutrition, and reproduction is a focal question being addressed by the USGS CAE research. Results will inform management agencies in Alaska and people that rely on caribou for food.

Alaska↗

USGS1979

Maps showing late Pleistocene and Holocene evolution of the South Texas continental shelf

Interpretation of acoustical profiles has provided insight into the late Quaternary geologic history of the Continental Shelf off South Texas. (See the geographic index map on sheet 1 for location of the area studied.) The profiles reveal the interplay of tectonism, sedimentation, and cyclic fluctuations of sea level in the building and geologic evolution of the continental terrace. The sequence of sediments studied extends to about 200 meters (m) beneath the sea-floor surface. Four seismic-stratigraphic units underlain by four prominent sound reflectors were identified and mapped. This geologic synthesis, for which the research was funded by the U.S. Bureau of Land Management (BLM), is but one aspect of a coordinated, multidisciplinary environmental study of the South Texas Outer Continental Shelf sponsored by BLM (Berryhill, 1976, 1977). The environmental studies are keyed to the leasing of Federal Outer Continental Shelf (OCS) lands for petroleum exploration and production. Their purpose is to provide the data development of petroleum resources on the OCS, as well as to provide the basis for predicting the impact of oil and gas exploration and production on the marine environment. Of primary concern is the recognition of geologic conditions that might be hazardous to structures placed on the sea floor. Geologic hazards relate directly to the potential for significant movement of the sea floor in the future. Judging sea-floor stability and recognizing geologic features that are potentially hazardous require an understanding of the recent geologic history of the area, which, in turn, entails determining the relative rates and interactions of sedimentation and tectonism through time. In addition to the primary objective, the synthesis provides knowledge about the magnitude and extent of sea-level fluctuations in the western Gulf of Mexico, and it provides a depositional facies model of possible use in appraising the resource potential of the more deeply buried sediments.

Texas↗

USGS2007

Finding the Exotic Faucet Snail (Bithynia tentaculata): Investigation of Waterbird Die-Offs on the Upper Mississippi River National Wildlife and Fish Refuge

Beginning in 2002, there have been major waterbird die-offs every spring and fall in Lake Onalaska (Navigation Pool 7 of the Upper Mississippi River) located near La Crosse, Wisconsin. This area is part of the Upper Mississippi River National Wildlife and Fish Refuge (UMR Refuge) and lies within the Mississippi Flyway, through which an estimated 40 percent of the continent's waterfowl migrate. Through the 2006 spring migration, total mortality on the UMR Refuge was estimated at 22,000 to 26,000 birds, primarily American coots (Fulica americana) and lesser scaup (Aythya affinis). Two trematodes (Sphaeridiotrema globulus and Cyathocotyle bushiensis) that use the exotic faucet snail (Bithynia tentaculata) as an intermediate host were found to infect and kill the waterbirds. The faucet snail was introduced into the United States from Europe in the late 1800s. Because Lake Onalaska is a major spring and fall stop-over area for waterfowl in the Mississippi Flyway, concerns were raised that the snail and trematodes may be spreading to other waterfowl stop-over areas on the river. Exploratory sampling for faucet snails was conducted in 2005 and 2006 in navigation Pools 4-9 (excluding Pool 5a which is located between Pools 5 and 6), 11, and 13. Infected snails were found in all the sampled pools except Pool 6. To our knowledge, these are the first records of faucet snails and associated trematodes beyond those found in Pool 7, Lake Onalaska. Waterbird die-offs are becoming a UMR Refuge-wide problem. Information obtained through research and monitoring, including the identification of the origin of infections in snails and birds and the role various environmental factors have on this process, should help guide managers to develop effective mitigation and control measures.

Open-File Report↗

USGS2015

Southern Salish Sea Habitat Map Series: Admiralty Inlet

In 2010 the Environmental Protection Agency, Region 10 initiated the Puget Sound Scientific Studies and Technical Investigations Assistance Program, designed to support research in support of implementing the Puget Sound Action Agenda. The Action Agenda was created in response to Puget Sound having been designated as one of 28 estuaries of national significance under section 320 of the U.S. Clean Water Act, and its overall goal is to restore the Puget Sound Estuary's environment by 2020. The Southern Salish Sea Mapping Project was funded by the Assistance Program request for proposals process, which also supports a large number of coastal-zone- and ocean-management issues. The issues include the recommendations of the Marine Protected Areas Work Group to the Washington State Legislature (Van Cleve and others, 2009), which endorses a Puget Sound and coast-wide marine conservation needs assessment, gap analysis of existing Marine Protected Areas (MPA) and recommendations for action. This publication is the first of four U.S. Geological Survey Scientific Investigation Maps that make up the Southern Salish Sea Mapping Project. The remaining three map blocks to be published in the future, located south of Admiralty Inlet, are shown in figure 1. Puget Sound is a deep, fjord-type estuary covering an area of 2,330 km 2 in the Pacific Northwest region of the United States (fig. 1). It is connected to the ocean by the Strait of Juan de Fuca, a turbulent passage approximately 160 km in length and 22 km wide at its west end, expanding to over 40 km wide at its east end (Thomson, 1994). During the Pleistocene, the area was occupied several times by lobes of continental ice, resulting in a complex basin-fill of glacial and interglacial deposits that are locally as thick as 1100 m (Johnson and others, 2001). The last glaciation, called the Fraser glaciation, began after 28,800±740 14 C yr B.P. when ice started a slow expansion (Clague, 1981). At peak advance the westward Juan de Fuca lobe reached the edge of the continental shelf through the Juan de Fuca Strait shortly before 14,460±200 14 C yr B.P. (Herzer and Bornhold, 1982). The southward Puget lobe advanced to its terminal position in Puget Sound by around 14,150 14 C yr B.P. (Porter and Swanson, 1998). Ice retreated from its maximum to northern Whidbey Island by 13,650±350 14 C yr B.P. (Dethier and others, 1995). Retreating glaciers resulted in a thick sequence of ice-contact, glacial-marine sediment, and early post-glacial sediments (Linden and Schurrer, 1988). These deposits have experienced the effects of a marine transgression followed by regression, resulting in a sea-level several tens of meters lower than the present day (Linden and Schurrer, 1988). A second transgression brought sea level to about the present level by around 5,470±120 14 C yr B.P. (Clague and others, 1982) establishing the present oceanographic and geologic environment Puget Sound is separated into four interconnected basins; Whidbey, Central (Main), Hood Canal, and South (Thomson, 1994). The Whidbey, Central, and Hood Canal basins are the three main branches of the Puget Sound estuary and are separated from the Strait of Juan de Fuca by a double sill at Admiralty Inlet. The Admiralty Inlet map area includes the Inlet and a portion of the Whidbey Basin (fig. 1). The shallower South Basin is separated by a sill at Tacoma Narrows and is highly branched with numerous finger inlets. Flow within Puget Sound is dominated by tidal currents of as much as 1 m/s at Admiralty Inlet, reducing to approximately 0.5 m/s in the Central Basin (Lavelle and others, 1988). The lack of silt and clay-sized sediments in the Admiralty Inlet map area is likely a result of the strong currents (see Ground-Truth Studies for the Admiralty Inlet Map Area, sheet 3). The subtidal component of flow reaches approximately 0.1 m/s and is driven by density gradients arising from the contrast in salty ocean water at the entrance and freshwater inputs from stream flow (Lavelle and others, 1988). The total freshwater input to Puget Sound is approximately 3.4 x 10 6 m 3 /day, primarily from the Skagit River (Cannon, 1983). The subtidal circulation mostly consists of a two-layered flow in the basins with fresher water exiting at the surface and saltier water entering at depth (Ebbesmeyer and Cannon, 2001). In general, surface waters flow north and deeper waters flow south; variations arise from wind effects that can drive a surface current in the same direction as the wind, and a baroclinic response in the lower layer to about 100-m depth (Matsuura and Cannon, 1997). Oceanographic properties are influenced by temporal forcing parameters such as reduced stream flow during the 2000-01 drought that increased surface salinity and decreased differences between surface and bottom waters (Newton and others, 2003). On offshore seismic-reflection profiles, Pleistocene strata (excluding latest Pleistocene glacial and post-glacial deposits) form a distinct seismic unit, bounded below by pre-Tertiary or Tertiary basement and above by typically flat-lying latest Pleistocene to Holocene deposits that fill in erosional or depositional relief (Johnson and others, 2001). Cores from central Puget Sound have accumulation rates that range from 85 to 1200 mg/cm 2 /yr, or 0.12 to 2.4 cm/yr; the highest accumulation rates are near the southern end of central Puget Sound (Carpenter and others, 1985). Carpenter and others (1985) un-weighted arithmetic mean of accumulation rates for central Puget Sound deeper stations is 480±340 (± one standard deviation) mg/cm 2 /yr. Lavelle and others (1985) also found rates as high as 1200 mg/cm 2 /yr over the past approximately 70 years in cores in the Central Basin off of and north and south of Elliott Bay. Puget Sound basin rates are comparable to rates in midshelf silt deposits on the Washington coast north of the Columbia River (Nittrouer and others, 1979). The deep subtidal (in other words, below SCUBA depths) habitats of Puget Sound are relatively poorly known. A few subtidal surveys exist for several habitat types from the 1960s and 1970s (reviewed in Dethier, 1990), using grab and box core data. The Dethier (1990) review divides habitat up into Coast and Marine Ecological Classification Standard (CMECS) substrate, water column energy, and depth zones but does not attempt to map these habitats, rather it is an inventory of habitats found in the area and the flora and fauna associated with each habitat. The approach of the Southern Salish Sea Mapping project is to create highly detailed seafloor maps through collection, integration, interpretation, and visualization of swath sonar data (the undersea equivalent of satellite remote-sensing data in terrestrial mapping), acoustic backscatter, seafloor video, seafloor photography, and bottom-sediment sampling data. This approach is based in part on methods presented and data collection and product needs identified at the Washington State Seafloor Mapping Workshop (Washington State Seafloor Mapping Workshop Steering Committee, 2008), attended by coastal and marine managers and scientists. The map products display seafloor geomorphology and substrate, and identify potential marine benthic habitats. It is emphasized that the more interpretive habitat and geology maps rely on the integration of multiple, new high-resolution datasets and that mapping at small scales would not be possible without such data. Oceanographic current and wave data is not included in this analysis, however, the accompanying geographic information system (GIS) data set is designed and intended to be combined with oceanographic and biologic data sets assembled by others in the future and some of the GIS data has already been incorporated in the unpublished Nature Conservancy Benthic Habitats of Puget Sound database. This publication includes four map sheets, explanatory text, and a descriptive pamphlet. Each map sheet is published as a portable document format (PDF) file. ESRI ArcGIS compatible geotiffs (for example, bathymetry) and shapefiles (for example video observation points) will be available for download in the data catalog associated with this publication (Cochrane, 2015). An ArcGIS Project File with the symbology used to generate the map sheets is also provided. For those who do not own the full suite of ESRI GIS and mapping software, the data can be read using ESRI ArcReader, a free viewer that is available at http://www.esri.com/software/arcgis/arcreader/index.html .

Washington↗

USGS1976

Basic data from five core holes in the Raft River geothermal area, Cassia County, Idaho

Studies of the geothermal aspect-of the Bridge area of the Raft River basin in south-central Idaho (fig. 1) by the U.S. Geological Survey began in 1972 when Young and Mitchell (1973) made a geochemical and geologic reconnaissance of selected thermal waters in Idaho. The Bridge area had been designated the Frazier known geothermal resource area (Frazier KGRA) by the U.S. Geological Survey (Godwin and others-, 1971) . Since 1972, several units of the Geological Survey have studied the area to provide data for the U.S. Energy Research and Development Administration, which proposes to ascertain whether the geothermal resource can be developed for power generation and other uses. The studies include geologic mapping, geophysical surveys, water sampling, test drilling, and studies of all available drill- hole data. A list of reports already prepared on the area is included with this report. Core drilling of five holes began in August 1974 and was completed in March 1975. These holes are referred to as intermediate-depth core holes, principally because in the spring of 1974, 35 auger holes 25 to 98 feet (7.6 to 30 meters) were completed in the area (Crosthwaite, 1974), and the Aerojet Nuclear Company, under the auspices of the U.S. Energy Research and Development Administration, was planning some deep drilling 4,000 to 6,000 feet (1,200 to 1,800 meters) (fig. 1). The purpose of the core drilling was to provide information to test geophysical interpretations of the subsurface structure and lithology and to provide hydrologic and geologic data on the shallow part of the geothermal system. Samples of the core were made available to several divisions and branches of the Geological Survey and to people and agencies outside the Survey. This report presents the basic data from the core holes that had been collected to September 1, 1975, and includes lithologic and geophysical well logs, chemical analyses of water (table 1), and laboratory analyses of cores (table 2) that were completed as of the above date. The data were collected by the Idaho District office, Hydrologic Laboratory, Borehole Geophysics Research Project, and Drilling, Sampling, and Testing Section, all of the Water Resources Division, and the Branch of Central Environmental Geology of the Geologic Divison.

Idaho↗

USGS2007

Field Guide to the Plant Community Types of Voyageurs National Park

INTRODUCTION The objective of the U.S. Geological Survey-National Park Service Vegetation Mapping Program is to classify, describe, and map vegetation for most of the park units within the National Park Service (NPS). The program was created in response to the NPS Natural Resources Inventory and Monitoring Guidelines issued in 1992. Products for each park include digital files of the vegetation map and field data, keys and descriptions to the plant communities, reports, metadata, map accuracy verification summaries, and aerial photographs. Interagency teams work in each park and, following standardized mapping and field sampling protocols, develop products and vegetation classification standards that document the various vegetation types found in a given park. The use of a standard national vegetation classification system and mapping protocol facilitate effective resource stewardship by ensuring compatibility and widespread use of the information throughout the NPS as well as by other Federal and state agencies. These vegetation classifications and maps and associated information support a wide variety of resource assessment, park management, and planning needs, and provide a structure for framing and answering critical scientific questions about plant communities and their relation to environmental processes across the landscape. This field guide is intended to make the classification accessible to park visitors and researchers at Voyageurs National Park, allowing them to identify any stand of natural vegetation and showing how the classification can be used in conjunction with the vegetation map (Hop and others, 2001).

Techniques and Methods↗

USGS2019

Interactive mapping of nonindigenous species in the Laurentian Great Lakes

Nonindigenous species pose significant risks to the health and integrity of ecosystems around the world. Tracking and communicating the spread of these species has been of interest to ecologists and environmental managers for many years, particularly in the bi-national Laurentian Great Lakes of North America. In this paper, we introduce the Great Lakes Aquatic Nonindigenous Species Information System (GLANSIS) Map Explorer. The Map Explorer provides access to records of documented nonindigenous species and their spatial distributions. Users may view the distributions of well-known nonindigenous species (such as zebra mussels) as well as perform custom queries. Additional map layers allow users to compare the distribution of nonindigenous species to environmental conditions. This tool serves to communicate knowledge to diverse stakeholder groups and to enable further in-depth research on nonindigenous species.

Laurentian Great Lakes↗