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At least 109 records · Page 6Linked to original sources
USGS2019

West Florida shelf pipeline serves as sea turtle benthic habitat based on in-situ towed camera observations

The use of marine offshore benthic habitats by sea turtles is poorly characterized due to the difficulty of obtaining in situ data. Understanding benthic habitat use that is important to the species’ reproduction, foraging, and migrations is critical for guiding management decisions. A towed camera-based assessment survey system (C-BASS) equipped with environmental sensors was used to characterize and assess benthic habitats on the West Florida Shelf (WFS) from 2014 to 2018. During these cruises, sea turtles were opportunistically observed during the surveys, and critical in situ data such as spatiotemporal information, species identification, habitat use, behavior, and environmental data were collected and evaluated. In total, 79 sea turtles were observed during 97 transects of approximately 2700 km of seafloor, which was recorded on 380 h of video. Several sea turtle species were spotted within the WFS, including loggerhead Caretta caretta, Kemp’s ridley Lepidochelys kempii, and green turtles Chelonia mydas. These opportunistic sightings revealed an area of high use on the WFS, an anthropogenic structure known as the Gulfstream natural gas pipeline (GSPL). C-BASS survey results suggest that 2 sea turtle species (C. caretta and L. kempii) utilize this artificial structure primarily as a resting area. We emphasize the importance of combining habitat mapping techniques (towed underwater video and multibeam bathymetry/backscatter) with tracking technology to better understand the fine-scale habitat use of sea turtles.

Florida↗
USGS2022

Nekton community dynamics within active and inactive deltas in a major river estuary: Potential implications for altered hydrology regimes

High fisheries production within estuaries is associated with coastal upwelling, tidal mixing, and land-based runoff facing increasing impacts from climate and human activities. Active river deltas receive large riverine inflows compared to inactive river deltas, providing contrasting estuaries to compare impacts of river inflow on estuarine nekton. We quantified nekton assemblages and stable isotopes (δ 13 C, δ 15 N) of commercially important blue crab Callinectes sapidus Rathbun, 1896 within an active and inactive delta in coastal Louisiana to explore the impacts of differing riverine inflow. Crustaceans dominated estuarine assemblages, differing only by season and not delta type, with summer and fall supporting highest densities. Fish density and assemblages differed by the interaction of season and delta due to differences during the 2019 record high spring river inflow. During this period, the active delta supported reduced fish densities and richness compared to the inactive delta. Nekton densities across deltas and seasons reflect a combination of species life history characteristics and habitat conditions. The high spring river discharge in 2019 impacted habitat availability (reduced presence of submerged aquatic vegetation), water conditions (decreased temperature and salinity), and potentially displaced nekton to unsampled habitat areas (i.e. interior marsh surface) within the active delta. While differences in nekton density and assemblages were only evident during the high spring river discharge, δ 15 N values of blue crabs were approximately 1.5 times higher in the active delta, potentially indicating more terrestrial influence. Understanding how altered inflow impacts environmental variables supporting estuarine nekton production remains critical for supporting management within these hydrologically managed regions.

Louisiana↗
USGS2025

Environmental conditions influencing the abundance of the salmonid ectoparasite Salmincola californiensis across upper Willamette River Reservoirs, Oregon

The freshwater copepod Salmincola californiensis is an ectoparasite of Pacific salmon and trout ( Oncorhynchus spp.). High levels of infection by this parasite can significantly damage gills and result in blood loss, affecting the fitness and survival of hosts, and it may hinder recovery efforts of threatened and endangered salmonids. Juvenile salmonids that rear in reservoirs have been reported to experience higher rates of infection than their stream-dwelling counterparts. To date, the relationship between reservoir environmental conditions and infection rates remains poorly understood. Here, we evaluated sampling methods designed to capture S. californiensis copepodids, the free-swimming infectious life stage of this parasitic copepod, and develop predictive models of parasite abundance in reservoirs . We used light traps to collect 675 zooplankton samples from various sites and depths in Cougar, Lookout Point, and Fall Creek reservoirs, Oregon, USA during five months in 2020. We tested several predictive models of parasite abundance using environmental covariates obtained concurrently during plankton surveys ( e.g. , temperature, ambient light and water clarity, reservoir plankton profiles, and water flow). Our models showed a strong influence of water temperature on abundance of copepodids, with maximum initial abundance occurring at the mean water temperature 15.2 °C. At that temperature, August abundance was estimated to be 58.6 copepodids per site in Cougar Reservoir, 43.8 copepodids per site in Fall Creek Reservoir, and 3.5 copepodids per site in Lookout Point Reservoir. Water temperature and reservoir outflow both affected population growth of copepodids: increased water temperature was associated with an increase in population growth rate while an increased reservoir outflow was associated with a decrease in population growth rate. The efficacy of our sampling method was influenced by percent of moon fullness, whether the sample site was above or below the thermocline, water temperature, and number of juvenile sculpin fishes ( Cottus spp.) captured in the trap. The mean probability of detecting a single copepodid if one was present was 0.042, but detection probability increased to 0.29 under ideal trap set conditions of warmer water, location above the thermocline, and a full moon. Biologists and managers could use these methods to assess the presence and abundance of S. californiensis in other locations, or to inform reservoir operations to reduce potential salmonid infections.

Oregon↗
USGS2025

Comparison of two benthic assemblage sampling gears for use on intertidal oyster reefs in Louisiana

Background Estuarine biodiversity plays a vital role in supporting ecosystem functions yet remains threatened by climate change and anthropogenic activity. Tracking and identifying estuarine biodiversity trends helps management ensure long-term provisions of human and environmental benefits by contributing to the estimation of habitat loss and the monitoring of restoration and conservation progress. However, the sampling gear and biodiversity metric used may indicate different conclusions, which can lead to uncertainty in the actual state of the ecosystem-level biodiversity. Sampling benthic biodiversity in complex estuarine habitats, such as oyster reefs, is particularly challenging because no one gear type captures entire target assemblages, and differences in gear efficiency on these complex habitats make comparisons across gear types challenging. Methods We investigated how estimates of oyster reef-associated benthic taxa abundance, richness, Pielou’s evenness, and Shannon-Wiener diversity differed across three Crassostrea virginica reefs in Louisiana between suction sampler and substrate tray sampling gears ( n = 6), and how gear influenced comparisons across reefs (3 reefs × 6 replicates × 2 gears). Results Abundance and richness were higher, and Pielou’s evenness was lower, in trays compared to suction samples at all reefs. Shannon-Wiener diversity was similar in suction samples and trays at two out of three reefs. Amphipod taxa were numerically dominant in trays, skewing the distribution of abundances and driving the reef assemblage differences between gears. Abundance and Shannon-Wiener diversity were similar across reefs within each gear. However, there were significant differences in richness across reefs in tray samples only, while evenness differed across reefs only in suction samples. Our results highlight that gear choices, along with biodiversity metrics tracked, can result in different conclusions in biodiversity trends, ultimately affecting conservation decisions and management.

Louisiana↗
USGS2023

Elodea mediates juvenile salmon growth by altering physical structure in freshwater habitats

Invasive species introductions in high latitudes are accelerating and elevating the need to address questions of their effects on Subarctic and Arctic ecosystems. As a driver of ecosystem function, submerged aquatic vegetation is one of the most deleterious biological invasions to aquatic food webs. The aquatic plant Elodea spp. has potential to be a widespread invader to Arctic and Subarctic ecosystems and is already established in 19 waterbodies in Alaska, USA. Elodea spp. has been found to alter ecosystem processes through multiple pathways; yet little is known about the impact of Elodea spp. on fish life history. A primary concern is the effect of Elodea spp. on juvenile Pacific salmon ( Oncorhynchus spp.), because this invading plant can form dense stands in littoral zones, potentially impacting important freshwater rearing habitats used by juvenile fish for foraging and refuge from predators. We used a field experiment to test the effect of Elodea spp. on juvenile coho salmon ( O. kisutch ) growth in an infested lake near Cordova, Alaska, USA. We found that Elodea spp. stands result in reduced growth and a lower trophic position for juvenile coho salmon over the summer compared to habitats dominated by a native assemblage of aquatic plants. While infested sites were not associated with significant changes in water condition or primary productivity compared to sites dominated by native vegetation, zooplankton densities were reduced, and Elodea spp. height and vegetation richness increased macroinvertebrate densities. Combined, these results indicate that Elodea spp. may alter the flow of energy to juvenile salmon by restructuring space and affecting prey resources for rearing fish. Furthermore, these results suggest that widespread establishment of Elodea spp. may alter the quality of habitat for juvenile salmon and, by affecting juvenile fish growth, could lead to population-level impacts on salmon returns.

Biological Invasions↗
USGS2003

Applying indicators of hydrologic alteration to Texas streams: overview of methods with examples from the Trinity River basin

Streamflow is a component of aquatic ecosystem health, and long-term alteration of streamflow characteristics can produce large changes in aquatic ecosystem structure and function. The physical, chemical, and biological properties of aquatic ecosystems are all affected by the magnitude and frequency of streamflow. For example, the physical structure (hydrogeomorphology) of aquatic habitats is a property of the interaction between streamflow magnitude and frequency and the physical landscape (Leopold and others, 1992). Chemical processes are affected by changes in water residence time, which is a function of streamflow. Similarly, the structure and function of biological communities associated with stream ecosystems depend in large part on the hydrologic regime (Poff and Ward, 1989, 1990; Sparks, 1992). Within-year variation in streamflow is essential to the survival, growth, and reproduction of aquatic species. Altering streamflow magnitude and frequency and within-year variability has the potential to modify critical aspects of the physical habitat (Bain and others, 1988). Documenting the degree to which streamflow has been modified by the cumulative effects of water development is critical to assessing aquatic ecosystem health. The U.S. Geological Survey (USGS), in cooperation with the Texas Commission on Environmental Quality, conducted a study of the application of the Indicators of Hydrologic Alteration (IHA) methods developed by Richter and others (1996, 1997) to identify streams at risk for biological impairment from the loss of streamflow-dependent habitat. This report provides a brief overview of selected IHA methods for assessing hydrologic alteration; presents examples that illustrate the application of the methods using streamflow data from a subset of USGS stations in the Trinity River Basin, Texas, analyzed in the study; and addresses applicability of the methods statewide.

Texas↗
USGS1978

The biology of Salt Wells Creek and its tributaries, southwestern Wyoming

A description of aquatic organisms and biological communities is presented for Salt Wells Creek, a plains stream in the Green River basin. The description includes seasonal population fluctuations of benthic organisms and algae, the food pyramid, and nutrient relations between various types of plants and animals. The algae and stream invertebrates were studied to determine baseline data and biological indicators of water quality. (Woodard-USGS).

Water-Resources Investigations Report↗
USGS2025

Clarifying the trophic state concept to advance macroscale freshwater science and management

For over a century, ecologists have used the concept of trophic state (TS) to characterize an aquatic ecosystem's biological productivity. However, multiple TS classification schemes, each relying on a variety of measurable parameters as proxies for productivity, have emerged to meet use-specific needs. Frequently, chlorophyll a, phosphorus, and Secchi depth are used to classify TS based on autotrophic production, whereas phosphorus, dissolved organic carbon, and true color are used to classify TS based on both autotrophic and heterotrophic production. Both classification approaches aim to characterize an ecosystem's function broadly, but with varying degrees of autotrophic and heterotrophic processes considered in those characterizations. Moreover, differing classification schemes can create inconsistent interpretations of ecosystem integrity. For example, the US Clean Water Act focuses exclusively on algal threats to water quality, framed in terms of eutrophication in response to nutrient loading. This usage lacks information about non-algal threats to water quality, such as dystrophication in response to dissolved organic carbon loading. Consequently, the TS classification schemes used to identify eutrophication and dystrophication may refer to ecosystems similarly (e.g., oligotrophic and eutrophic), yet these categories are derived from different proxies. These inconsistencies in TS classification schemes may be compounded when interdisciplinary projects employ varied TS frameworks. Even with these shortcomings, TS can still be used to distill information on complex aquatic ecosystem function into a set of generalizable expectations. The usefulness of distilling complex information into a TS index is substantial such that usage inconsistencies should be explicitly addressed and resolved. To emphasize the consequences of diverging TS classification schemes, we present three case studies for which an improved understanding of the TS concept advances freshwater research, management efforts, and interdisciplinary collaboration. To increase clarity in TS, the aquatic sciences could benefit from including information about the proxy variables, ecosystem type, as well as the spatiotemporal domains used to classify TS. As the field of aquatic sciences expands and climatic irregularity increases, we highlight the importance of re-evaluating fundamental concepts, such as TS, to ensure their compatibility with evolving science.

Ecosphere↗
USGS2023

Importance of dense aquatic vegetation in seasonal phosphate and particle transport in an agricultural headwater stream

Agricultural headwater streams and ditches commonly host dense stands of aquatic vegetation that grow and decay over seasons and exert physical and biological controls on the transport of nutrients from cropland to larger rivers. This study examined changes in the transport of phosphorus (P) in an agricultural drainage ditch in the Maumee River Basin (Ohio, USA) by conducting constant rate injections of a novel tracer mixture (conservative salt [Cl as NaCl], dissolved P [KH 2 PO 4 ], and a fluorescent fine particle) in spring, summer, and fall. We quantified transport behavior for solutes and particles using a traditional transient storage modeling framework consisting of mobile and immobile storage zones connected by a first-order exchange rate constant. Transient storage was greatest during the spring, when thicker vegetation caused more pooling and flow stagnation, and decreased through fall, as vegetation thinned. Soluble P uptake lengths were 8.7 times longer in fall than spring, likely due to declines in biological uptake rates with colder temperatures and immobile zone storage with thinning vegetation. Particle capture lengths also decreased by a factor of 4.3 from fall to spring. With the increasing eutrophication of Lake Erie and waterbodies around the world that lie downstream from agricultural landscapes, it is beneficial to understand nutrient transport across watersheds, including small agricultural streams. This study highlights the physical and biological roles that aquatic vegetation plays in small agricultural streams by creating seasonally variable immobile zones that slow the flow of nutrients, providing surface area for biofilms, and capturing particles that bind nutrients.

Water Resources Research↗
USGS2002

Alien invasions in aquatic ecosystems: Toward an understanding of brook trout invasions and potential impacts on inland cutthroat trout in western North America

Experience from case studies of biological invasions in aquatic ecosystems has motivated a set of proposed empirical “rules” for understanding patterns of invasion and impacts on native species. Further evidence is needed to better understand these patterns, and perhaps contribute to a useful predictive theory of invasions. We reviewed the case of brook trout ( Salvelinus fontinalis )invasions in the western United States and their impacts on native cutthroat trout ( Oncorhynchus clarki ). Unlike many biological invasions, a considerable body of empirical research on brook trout and cutthroat trout is available. We reviewed life histories of each species, brook trout invasions, their impacts on cutthroat trout, and patterns and causes of segregation between brook trout and cutthroat trout. We considered four stages of the invasion process: transport, establishment, spread, and impacts to native species. Most of the research we found focused on impacts. Interspecific interactions, especially competition, were commonly investigated and cited as impacts of brook trout. In many cases it is not clear if brook trout invasions have a measurable impact. Studies of species distributions in the field and a variety of experiments suggest invasion success of brook trout is associated with environmental factors, including temperature, landscape structure, habitat size, stream flow, and human influences. Research on earlier stages of brook trout invasions (transport, establishment, and spread) is relatively limited, but has provided promising insights. Management alternatives for controlling brook trout invasions are limited, and actions to control brook trout focus on direct removal, which is variably successful and can have adverse effects on native species. The management applicability of research has been confounded by the complexity of the problem and by a focus on understanding processes at smaller scales, but not on predicting patterns at larger scales. In the short-term, an improved predictive understanding of brook trout invasions could prove to be most useful, even if processes are incompletely understood. A stronger connection between research and management is needed to identify more effective alternatives for controlling brook trout invasions and for identifying management priorities.

western United States↗
USGS2011

Fish assemblage dynamics in a Neotropical floodplain relative to aquatic macrophytes and the homogenizing effect of a flood pulse

The presence of aquatic macrophytes is a key factor in the selection of habitats by fish in floodplain lakes because these plants enhance the physical and biological complexities of aquatic habitats. The seasonal flood pulse may influence this interaction, but there is no information in the literature about the effects that flood events may have on macrophytes assemblages and its associated effects on fish assemblages. Thus, this article aimed to investigate whether species richness, evenness and similarities in fish assemblage composition differed between littoral areas vegetated with macrophytes and unvegetated areas, before and after a flood. We sampled three lakes in the floodplain of the upper Paraná River basin. Sampling was conducted before (December 2004 and January 2005) and after (early March, late March and May 2005) a flood event. Overall, species richness and evenness were higher in macrophytes-covered areas. Before the flood, the composition of fish assemblages was distinct when comparing vegetated and unvegetated areas. After the flood, the similarity in fish assemblage composition was higher, indicating a homogenization effect of floods for fish inhabiting littoral areas of floodplain lakes. After the flood, opportunistic species dominated the fish assemblages in aquatic macrophytes, apparently restructuring assemblages in the littoral, restarting a succession process. Thus, the observed homogenization effect of the flood could minimize biological interactions and could induce fish assemblages to begin a new process of structurization.

Finado Raimundo Lake, Porcos Lake, Ventura Lake↗
USGS2010

Aquatic macroinvertebrates of the lower Missouri River

The U.S. Geological Survey (USGS) Columbia Environmental Research Center (CERC), in cooperation with the U.S. Environmental Protection Agency (USEPA), the U.S. Fish & Wildlife Service (USFWS), and the Missouri Department of Natural Resources (MDNR), has been conducting research on the aquatic macroinvertebrates of the lower Missouri River since the mid-1990s. This research was initiated in response to the need for comprehensive characterization of biological communities inhabiting aquatic habitats in large river systems that have historically been poorly studied. The USGS Status and Trends of Biological Resources Program provided partial funding for pilot studies that began in 1993 when the CERC was part of the USFWS. The purpose of this fact sheet is to provide stakeholders, scientists, management, and the general public with a basic summary of results from studies conducted by the CERC since that time period.

Fact Sheet↗
USGS1999

Stream and aquifer biology of south-central Texas — A literature review, 1973-97

This report summarizes in table format 32 aquatic vertebrate (primarily fish), 54 aquatic invertebrate, and 13 aquatic plant studies available for the area of the South-Central Texas study unit of the U.S. Geological Survey National Water-Quality Assessment. The studies, published mostly during 1973–97, pertain to the Guadalupe, San Antonio, and Nueces River Basins, the San Antonio-Nueces and Nueces-Rio Grande Coastal Basins, and the Edwards aquifer where it underlies the upper parts of the three river basins. The biology of the study-unit streams is determined mostly by the characteristics of the ecoregions they transect—the Edwards Plateau, Texas Blackland Prairies, East Central Texas Plains, Western Gulf Coastal Plain, and Southern Texas Plains. About 20 percent of the previous fish and invertebrate studies and about 75 percent of the aquatic plant surveys have centered on Comal Springs in Comal County and San Marcos Springs in Hays County. Although several important studies are available for the San Antonio region, documentation of aquatic biology for the remainder of the study unit is relatively sparse. The streams in the study unit, particularly in the Edwards Plateau, support three dominant biological groups—fish, aquatic invertebrates, and plants. Potential threats to these organisms include impoundments and flood-control projects, siltation from erosion, ground-water pumping, recreational activities, wastewater discharge, and introduction of non-native species. More than 30 non-native fish, invertebrate, and plant species have been introduced into the region. Of the 19 aquatic species Federally listed as endangered or threatened in Texas, 8 are associated with springs and spring runs in the study unit. All of the endangered species in the study unit are associated with springs and spring runs. A large number of endemic species in the study unit are associated with subterranean aquatic ecosystems, most likely a consequence of the unique proximity of the varied topographic and hydrologic conditions of the area and of the geological development of the Edwards aquifer. Ninety-one endemics, including 44 species found solely underground, are associated with the aquatic ecosystems (including springs) of the Edwards aquifer.

Texas↗
USGS2020

Physical and chemical stressors on algal, invertebrate, and fish communities in 14 Milwaukee area streams, 2004–2013

In 2004, the U.S. Geological Survey (USGS) began sampling 14 wadable streams in urban or urbanizing watersheds near Milwaukee, Wisconsin. The overall goal of the study is to assess the health of the aquatic communities in the Milwaukee Metropolitan Sewerage District planning area to inform current and future watershed management. In addition to collection of biological data on aquatic communities, physical and chemical data were also collected to evaluate effects of potential environmental stressors on the aquatic communities. This fact sheet summarizes the primary results of the study from 2004 to 2013. Detailed information is described in Scudder Eikenberry and others (2020a), and all data are available in Scudder Eikenberry and others (2020b; https://doi.org/10.5066/P9FWMODL ).

Wisconsin↗
USGS2012

Stream ecosystems change with urban development

The healthy condition of the physical living space in a natural stream—defined by unaltered hydrology (streamflow), high diversity of habitat features, and natural water chemistry—supports diverse biological communities with aquatic species that are sensitive to disturbances. In a highly degraded urban stream, the poor condition of the physical living space—streambank and tree root damage from altered hydrology, low diversity of habitat, and inputs of chemical contaminants—contributes to biological communities with low diversity and high tolerance to disturbance.

General Information Product↗
USGS2020

Characterizing benthic macroinvertebrate and algal biological condition gradient models for California wadeable Streams, USA

The Biological Condition Gradient (BCG) is a conceptual model that describes changes in aquatic communities under increasing levels of anthropogenic stress. The BCG helps decision-makers connect narrative water quality goals (e.g., maintenance of natural structure and function) to quantitative measures of ecological condition by linking index thresholds based on statistical distributions (e.g., percentiles of reference distributions) to expert descriptions of changes in biological condition along disturbance gradients. As a result, the BCG may be more meaningful to managers and the public than indices alone. To develop a BCG model, biological response to stress is divided into 6 levels of condition, represented as changes in biological structure (abundance and diversity of pollution sensitive versus tolerant taxa) and function. We developed benthic macroinvertebrate (BMI) and algal BCG models for California perennial wadeable streams to support interpretation of percentiles of reference-based thresholds for bioassessment indices (i.e., the California Stream Condition Index [CSCI] for BMI and the Algal Stream Condition Index [ASCI] for diatoms and soft-bodied algae). Two panels (one of BMI ecologists and the other of algal ecologists) each calibrated a general BCG model to California wadeable streams by first assigning taxa to specific tolerance and sensitivity attributes, and then independently assigning test samples (264 BMI and 248 algae samples) to BCG Levels 1–6. Consensus on the assignments was developed within each assemblage panel using a modified Delphi method. Panels then developed detailed narratives of changes in BMI and algal taxa that correspond to the 6 BCG levels. Consensus among experts was high, with 81% and 82% expert agreement within 0.5 units of assigned BCG level for BMIs and algae, respectively. According to both BCG models, the 10th percentiles index scores at reference sites corresponded to a BCG Level 3, suggesting that this type of threshold would protect against moderate changes in structure and function while allowing loss of some sensitive taxa. The BCG provides a framework to interpret changes in aquatic biological condition along a gradient of stress. The resulting relationship between index scores and BCG levels and narratives can help decision-makers select thresholds and communicate how these values protect aquatic life use goals.

California↗
USGS2025

Long Term Resource Monitoring procedures—Aquatic vegetation monitoring

This standard operating procedure (SOP) manual describes the collection of standardized, long-term data for aquatic vegetation communities in selected study pools of the Upper Mississippi River System in the United States. The primary intent of the data collection is to assess the status and trends that aid in understanding the unique river ecosystem and to guide large-scale ecological restoration of the river and its biological communities, like aquatic plants and their dependent wildlife. This SOP is an update to the version published in 2000 and reflects modifications to sample sizes and additions of new data collection procedures. All long-term monitoring programs and their SOPs must be adapted to changing conditions and be improved through learning, and this SOP clarifies procedures and adds new elements since the initial SOP was written more than 25 years ago. The SOP is intended for multiple audiences, including vegetation specialists through the Upper Mississippi River Restoration Program, data analysts using the publicly available data generated through this SOP, and natural resource managers and restoration practitioners who need data and science to guide some decisions. This SOP may be transferable and adaptable to other ecosystems when the aquatic plant community is the focus.

Illinois, Iowa, Minnesota, Missouri, Wisconsin↗