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International importance of Percids: Summary and looking forward

Research presented in the preceding chapters emphasizes recent advancements in the research, management, and aquaculture of Walleye, Sauger, and Yellow Perch in North America. These percid fishes, along with the European Perch and Pikeperch, are economically and ecologically important fishes in their native geographic range. Advances in techniques to evaluate current habitat and predict future habitat conditions provide managers with detailed baseline information and biophysical models useful for evaluating adaptive management practices. Current habitat use and movement assessments have improved substantially with technological advancements in acoustic tags and extensive receiver array networks, which, combined with genetic and genomic tools, are improving percid stock assessments and management. Advances in percid aquaculture techniques have improved growth, survival, and disease resistance, enhancing percid stocking efforts and the production of marketable fish. The exchange of information between researchers and managers will continue to advance techniques of percid management for commercial and recreational exploitation and improve aquaculture practices to provide a lucrative commercial aquaculture industry.

Book chapter

Waterbird use of catfish ponds and migratory bird habitat initiative wetlands in Mississippi

Aquaculture can provide important surrogate habitats for waterbirds. In response to the 2010 Deepwater Horizon oil spill, the National Resource Conservation Service enacted the Migratory Bird Habitat Initiative through which incentivized landowners provided wetland habitats for migrating waterbirds. Diversity and abundance of waterbirds in six production and four idled aquaculture facilities in the Mississippi Alluvial Valley were estimated during the winters of 2011–2013. Wintering waterbirds exhibited similar densities on production (i.e., ∼22 birds/ha) and idled (i.e., ∼20 birds/ha) sites. A total of 42 species were found using both types of aquaculture wetlands combined, but there was considerable departure in bird guilds occupying the two wetland types. The primary users of production ponds were diving and dabbling ducks and American coots. However, idled ponds, with varying water depths (e.g., mudflats to 20 cm) and diverse emergent vegetation-water interspersion, attracted over 30 species of waterbirds and, on average, had more species of waterbirds from fall through early spring than catfish production ponds. Conservation through the Migratory Bird Habitat Initiative was likely responsible for this difference. Our results suggest production and idled Migratory Bird Habitat Initiative aquaculture impoundments produced suitable conditions for various waterbird species and highlight the importance of conservation programs on private lands that promote diversity in vegetation structure and water depths to enhance waterbird diversity.

Mississippi

Atlas of nonindigenous marine and estuarine species in the North Pacific

Executive Summary Marine and estuarine nonindigenous species (NIS) are found across the world’s oceans, and designing effective management strategies to mitigate this economic, ecological and human health threat requires a basic understanding of the existing invasion patterns at regional to global scales. However, to date, syntheses at ocean basin scales have essentially been nonexistent. To fill the gap for the North Pacific, we synthesized the distributions, invasion history, environmental tolerances, and natural history of the near-coastal nonindigenous species (NIS) reported from the member countries of the North Pacific Marine Science Organization (PICES; United States, Canada, China, Republic of Korea, Japan, and Russia). The hierarchical “Marine Ecoregions of the World” (MEOW) biogeographic schema was used as the framework for assessing species’ distributions, with the modification that we added a “region” level to differentiate eastern and western sides of oceans. The two North Pacific regions are the Northeast Pacific (NEP), which extends from the Gulf of California to the Aleutian Islands, and the Northwest Pacific (NWP), which extends from the East China Sea to the Kamchatka Shelf. To have complete coverage of the United States, we included the MEOW Hawaii Ecoregion as a separate reporting unit. To have complete coverage of Japan and China, we combined five MEOW ecoregions in southern China and Japan into the North Central-Indo Pacific (NCIP) Region. The various types of information were synthesized in a Microsoft Access database, the “PICES Nonindigenous Species Information System”, which is further described in the “User’s Guide and Metadata for the PICES Nonindigenous Species Information System” (Lee et al., 2012). The PICES database was then used to generate two-page “species profiles” that map the native and introduced distributions of each species and provide a standardized summary of its invasion history, environmental tolerances, and natural history. These species profiles form the bulk of the “Atlas of Nonindigenous Marine and Estuarine Species in the North Pacific”. A total of 747 near-coastal nonindigenous species were identified in the PICES countries, with four phyla (Arthropoda, Chordata, Mollusca, and Annelida) constituting more than 70% of these invaders. The NEP and Hawaii have similar numbers of reported nonindigenous species, 368 and 347, respectively. In comparison, the NWP has about 60% of the number of reported NIS, 208. The NCIP contains only 73 NIS, though there is limited information for these ecoregions. When evaluated at an individual MEOW ecoregion scale, the Hawaii Ecoregion was the most invaded with 347 invaders, followed by the Northern California Ecoregion, which includes the San Francisco Estuary, with 287 NIS. The most invaded ecoregion in the NWP was the Central Kuroshio Current Ecoregion, which includes Tokyo Bay, with 87 reported NIS. Eight potential reasons for this geographical discrepancy in the extent of invasion were considered. The two most important appear to be: 1) the milder temperature regimes in the NEP and Hawaii are more conducive for NWP species to invade the NEP and Hawaii than the reverse and 2) there has been a greater search effort for NIS in Hawaii and the NEP at least for certain taxonomic groups. In terms of how the NIS were transported, hull fouling was potentially the most important vector in the NEP, NWP, and Hawaii, with ballast water discharges the second most important in all three regions. Intentional stocking and aquaculture escapees were relatively more important in the NWP than the NEP or Hawaii, reflecting the extensive aquaculture in Asia. Aquaculture associated species (i.e., aquaculture hitchhikers) was relatively important in the NEP, reflecting the historical influx of invaders with the importation of Atlantic and Pacific oysters.

Report

Fish Rhabdoviruses

Many important viral pathogens of fish are members of the family Rhabdoviridae . The viruses in this large group cause significant losses in populations of wild fish as well as among fish reared in aquaculture. Fish rhabdoviruses often have a wide host and geographic range, and infect aquatic animals in both freshwater and seawater. The fish rhabdoviruses comprise a diverse collection of isolates that can be placed in one of two quite different groups: isolates that are members of the established genus Novirhabdovirus , and those that are most similar to members of the genus Vesiculovirus . Because the diseases caused by fish rhabdoviruses are important to aquaculture, diagnostic methods for their detection and identification are well established. In addition to regulations designed to reduce the spread of fish viruses, a significant body of research has addressed methods for the control or prevention of diseases caused by fish rhabdoviruses, including vaccination. The number of reported fish rhabdoviruses continues to grow as a result of the expansion of aquaculture, the increase in global trade, the development of improved diagnostic methods, and heightened surveillance activities. Fish rhabdoviruses serve as useful components of model systems to study vertebrate virus disease, epidemiology, and immunology.

Book chapter

Loma salmonae and related species

Loma salmonae is a microsporidium that infects Pacific salmon and causes a gill inflammatory syndrome known as microsporidial gill disease of salmon. This disease has been mostly associated with netpen-farmed Chinook salmon ( Oncorhynchus tshawytscha ) in British Columbia, Canada. Clinical, diagnostic, pathological aspects of disease, as well as approaches for disease avoidance in salmon aquaculture are discussed. A laboratory infection model in rainbow trout was used to determine life cycle-stages, transmission dynamics, pathophysiology, influence of temperature, and to test therapeutics applicable to aquaculture. This experimental model has been informative on various approaches of disease control, including the development of a promising vaccine. In addition to improving fish health in salmon farming in North America, this L. salmonae model will be applicable to other microsporidial diseases that may be encountered in emerging aquaculture regions.

Book chapter

Characterization of a Y-specific duplication/insertion of the anti-Mullerian hormone type II receptor gene based on a chromosome-scale genome assembly of yellow perch, Perca flavescens

Yellow perch, Perca flavescens , is an ecologically and economically important species native to a large portion of the northern United States and southern Canada and is also a promising candidate species for aquaculture. However, no yellow perch reference genome has been available to facilitate improvements in both fisheries and aquaculture management practices. By combining Oxford Nanopore Technologies long-reads, 10X Genomics Illumina short linked reads and a chromosome contact map produced with Hi-C, we generated a high-continuity chromosome-scale yellow perch genome assembly of 877.4 Mb. It contains, in agreement with the known diploid chromosome yellow perch count, 24 chromosome-size scaffolds covering 98.8% of the complete assembly (N50 = 37.4 Mb, L50 = 11). We also provide a first characterization of the yellow perch sex determination locus that contains a male-specific duplicate of the anti-Mullerian hormone type II receptor gene ( amhr2by ) inserted at the proximal end of the Y chromosome (chromosome 9). Using this sex-specific information, we developed a simple PCR genotyping assay which accurately differentiates XY genetic males ( amhr2by + ) from XX genetic females ( amhr2by − ). Our high-quality genome assembly is an important genomic resource for future studies on yellow perch ecology, toxicology, fisheries and aquaculture research. In addition, characterization of the amhr2by gene as a candidate sex-determining gene in yellow perch provides a new example of the recurrent implication of the transforming growth factor beta pathway in fish sex determination, and highlights gene duplication as an important genomic mechanism for the emergence of new master sex determination genes.

Molecular Ecology Resources

Fish meal and alternate sources of protein in fish feeds: Update 1993

Close to 12% of the world's 6.5 million metric tons of fish meal is used for aquaculture feeds. If current trends continue, roughly 20% to 25% of total world fish meal production could be used for aquaculture by the year 2000. Fish stocks used in fish meal reduction, however, appear to be in worldwide decline. A growing fish farming industry and a stagnating, if not diminishing, supply of fish meal have sobering economic and technologic implications for fish culture. Unless suitable alternate protein sources are found or other animal feeds begin to rely less on fish meal, fish production costs can be expected to increase dramatically. A precedent was set by the poultry industry, the most economically successful and competitive of the animal agriculture industries. Twenty years ago, the poultry industry consumed up to 80% of fish meal supplies. Through deliberate and well-organized research into alternate protein sources, the industry now uses less than 40% of supplies, and the trend is toward complete independence from fish meal. A comparable research effort is needed for aquaculture. Considering the biotechnologies available, plant proteins, processed to remove enzyme inhibitors and other antinutritional factors and properly supplemented with essential amino acids and minerals where needed, could produce results at least equivalent to those obtained with fish meal.

Fisheries

Seasonal movements and multiscale habitat selection of Whooping Crane (Grus americana) in natural and agricultural wetlands

Eleven of 15 species of cranes (family: Gruidae) are considered vulnerable or endangered, and the increase of agriculture and aquaculture at the expense of natural wetlands and grasslands is a threat to Gruidae worldwide. A reintroduced population of Whooping Crane ( Grus americana ) was studied in coastal and agricultural wetlands of Louisiana and Texas, USA. The objectives were to compare Whooping Crane movements across seasons, quantify multiscale habitat selection, and identify seasonal shifts in selection. Whooping Cranes ( n = 53) were tracked with satellite transmitters to estimate seasonal core-use areas (50% home range contours) via Brownian bridge movement models and assess habitat selection. Whooping Crane core-use areas ( n = 283) ranged from 4.7 to 438.0 km 2 , and habitat selection changed seasonally as shallow water availability varied. Whooping Crane core-use areas were composed of more fresh marsh in spring/summer, but shifted towards rice and crawfish ( Procambarus spp.) aquaculture in the fall/winter. Within core-use areas, aquaculture was most strongly selected, particularly in fall when fresh marsh became unsuitable. Overall, the shifting of Whooping Crane habitat selection over seasons is likely to require large, heterogeneous areas. Whooping Crane use of agricultural and natural wetlands may depend on spatio-temporal dynamics of water depth.

Louisiana

Estimated use of water in the United States in 2005

Estimates of water use in the United States indicate that about 410 billion gallons per day (Bgal/d) were withdrawn in 2005 for all categories summarized in this report. This total is slightly less than the estimate for 2000, and about 5 percent less than total withdrawals in the peak year of 1980. Freshwater withdrawals in 2005 were 349 Bgal/d, or 85 percent of the total freshwater and saline-water withdrawals. Fresh groundwater withdrawals of 79.6 Bgal/day in 2005 were about 5 percent less than in 2000, and fresh surface-water withdrawals of 270 Bgal/day were about the same as in 2000. Withdrawals for thermoelectric-power generation and irrigation, the two largest uses of water, have stabilized or decreased since 1980. Withdrawals for public-supply and domestic uses have increased steadily since estimates began. Thermoelectric-power generation water withdrawals were an estimated 201 Bgal/d in 2005, about 3 percent more than in 2000. In 2005, thermoelectric freshwater withdrawals accounted for 41 percent of all freshwater withdrawals. Nearly all of the water withdrawn for thermoelectric power was surface water used for once-through cooling at power plants. Twenty-nine percent of thermoelectric-power withdrawals were saline water from oceans and brackish coastal water bodies. Withdrawals for irrigation in 2005 were 128 Bgal/d, about 8 percent less than in 2000 and approximately equal to estimates of irrigation water use in 1970. In 2005, irrigation withdrawals accounted for 37 percent of all freshwater withdrawals and 62 percent of all freshwater withdrawals excluding thermoelectric withdrawals. Irrigated acreage increased from 25 million acres in 1950 to 58 million acres in 1980, then remained fairly constant before increasing in 2000 and 2005 to more than 60 million acres. The number of acres irrigated using sprinkler and microirrigation systems has continued to increase and in 2005 accounted for 56 percent of the total irrigated acreage. Water withdrawals for public supply were 44.2 Bgal/d in 2005, which is 2 percent more than in 2000, although the population increased by more than 5 percent during that time. Public supply accounted for 13 percent of all freshwater withdrawals in 2005 and 21 percent of all freshwater withdrawals excluding thermoelectric withdrawals. The percentage of the U.S. population obtaining drinking water from public suppliers has increased steadily from 62 percent in 1950 to 86 percent in 2005. Most of the population providing their own household water obtained their supplies from groundwater sources. Self-supplied industrial water withdrawals continued to decline in 2005, as they have since their peak in 1970. Self-supplied industrial withdrawals were an estimated 18.2 Bgal/d in 2005, a 30-percent decrease from 1985. An estimated 4.02 Bgal/d were withdrawn for mining in 2005, which is 11 percent less than in 2000, and 18 percent less than in 1990. Withdrawals for mining were only 58 percent freshwater. Livestock water use was estimated to be 2.14 Bgal/d in 2005, which is the smallest estimate since 1975, possibly due to the use of standardized coefficients for estimation of animal water needs. Water use for aquaculture was an estimated 8.78 Bgal/d in 2005, nearly four times the amount estimated in 1985. Part of this increase is due to the inclusion of more facilities in the estimates in 2005, and the use of standardized coefficients for estimating aquaculture use from other data. Fresh surface water was the source for a majority of the public-supply, irrigation, aquaculture, thermoelectric, and industrial withdrawals. Nearly 30 percent of all fresh surface-water withdrawals in 2005 occurred in five States. In California, Idaho, and Colorado, most of the fresh surface-water withdrawals were for irrigation. In Texas and Illinois, most of the fresh surface-water withdrawals were for thermoelectric power generation. About 67 percent of fresh groundwater withdrawals in 2005 were for irrigation, and 18 percent were for public supply. More than half of fresh groundwater withdrawals in the United States in 2005 occurred in six States. In California, Texas, Nebraska, Arkansas, and Idaho, most of the fresh groundwater withdrawals were for irrigation. In Florida, 52 percent of all fresh groundwater withdrawals were for public supply, and 34 percent were for irrigation.

Circular

Estimated use of water in the United States in 2010

Water use in the United States in 2010 was estimated to be about 355 billion gallons per day (Bgal/d), which was 13 percent less than in 2005. The 2010 estimates put total withdrawals at the lowest level since before 1970. Freshwater withdrawals were 306 Bgal/d, or 86 percent of total withdrawals, and saline-water withdrawals were 48.3 Bgal/d, or 14 percent of total withdrawals. Fresh surface-water withdrawals (230 Bgal/d) were almost 15 percent less than in 2005, and fresh groundwater withdrawals (76.0 Bgal/d) were about 4 percent less than in 2005. Saline surface-water withdrawals were 45.0 Bgal/d, or 24 percent less than in 2005. Updates to the 2005 saline groundwater withdrawals, mostly for thermoelectric power, reduced total saline groundwater withdrawals to 1.51 Bgal/d, down from the originally reported 3.02 Bgal/d. Total saline groundwater withdrawals in 2010 were 3.29 Bgal/d, mostly for mining use. Thermoelectric power and irrigation remained the two largest uses of water in 2010, and total withdrawals for both were notably less than in 2005. Withdrawals in 2010 for thermoelectric power were 20 percent less and withdrawals for irrigation were 9 percent less than in 2005. Similarly, other uses showed reductions compared to 2005, specifically public supply (–5 percent), self-supplied domestic (–3 percent), self-supplied industrial (–12 percent), and livestock (–7 percent). Only mining (39 percent) and aquaculture (7 percent) reported larger withdrawals in 2010 compared to 2005. Thermoelectric power, irrigation, and public-supply withdrawals accounted for 90 percent of total withdrawals in 2010. Withdrawals for thermoelectric power were 161 Bgal/d in 2010 and represented the lowest levels since before 1970. Surface-water withdrawals accounted for more than 99 percent of total thermoelectric-power withdrawals, and 73 percent of those surface-water withdrawals were from freshwater sources. Saline surface-water withdrawals for thermoelectric power accounted for 97 percent of total saline surface-water withdrawals for all uses. Thermoelectric-power withdrawals accounted for 45 percent of total withdrawals for all uses, and freshwater withdrawals for thermoelectric power accounted for 38 percent of the total freshwater withdrawals for all uses. Irrigation withdrawals were 115 Bgal/d in 2010 and represented the lowest levels since before 1965. Irrigation withdrawals, all freshwater, accounted for 38 percent of total freshwater withdrawals for all uses, or 61 percent of total freshwater withdrawals for all uses excluding thermoelectric power. Surface-water withdrawals (65.9 Bgal/d) accounted for 57 percent of the total irrigation withdrawals, or about 12 percent less than in 2005. Groundwater withdrawals were 49.5 Bgal/d in 2010, about 6 percent less than in 2005. About 62,400 thousand acres were irrigated in 2010, an increase from 2005 of about 950 thousand acres (1.5 percent). The number of acres irrigated using sprinkler and microirrigation systems continued to increase and accounted for 58 percent of the total irrigated lands in 2010. Public-supply withdrawals in 2010 were 42.0 Bgal/d, or 5 percent less than in 2005, and represented the first declines in public-supply withdrawals since the 5-year reporting began in 1950. Total population in the United States increased from 300.7 million people in 2005 to 313.0 million people in 2010, an increase of 4 percent. Public-supply withdrawals accounted for 14 percent of the total freshwater withdrawals for all uses and 22 percent of freshwater withdrawals for all uses excluding thermoelectric power. The number of people that received potable water from public-supply facilities in 2010 was 268 million, or about 86 percent of the total U.S. population. This percentage was unchanged from 2005. Self-supplied domestic withdrawals were 3.60 Bgal/d, or 3 percent less than in 2005. More than 98 percent of the self-supplied domestic withdrawals were from groundwater sources. Self-supplied industrial withdrawals were 15.9 Bgal/d in 2010, a 12 percent decline from 2005, and continued the downward trend since the peak of 47 Bgal/d in 1970. Total self-supplied industrial withdrawals were 4 percent of total withdrawals for all uses and 8 percent of total withdrawals for all uses excluding thermoelectric power. Most of the total self-supplied industrial withdrawals were from surface-water sources (82 percent), and nearly all (93 percent) of those surface-water withdrawals were from freshwater sources. Nearly all of the groundwater withdrawals for self-supplied industrial use (98 percent) were from freshwater sources. Total aquaculture withdrawals were 9.42 Bgal/d in 2010, or 7 percent more than in 2005, and surface water was the primary source (81 percent). Most of the surface-water withdrawals occurred at facilities that operated flowthrough raceways, which returned the water to the source directly after use. Aquaculture withdrawals accounted for 3 percent of the total withdrawals for all uses and 5 percent of the total withdrawals for all uses excluding thermoelectric. Total mining withdrawals in 2010 were 5.32 Bgal/d, or about 1 percent of total withdrawals from all uses and 3 percent of total withdrawals from all uses excluding thermoelectric. Mining withdrawals accounted for the largest percentage increase (39 percent) in water use between 2005 and 2010 among all the categories. Groundwater withdrawals accounted for 73 percent of the total mining withdrawals, and the majority of the groundwater was saline (71 percent). The majority (80 percent) of surface-water withdrawals for mining was freshwater. Livestock withdrawals in 2010 were 2.00 Bgal/d, or 7 percent less than in 2005. All livestock withdrawals were from freshwater sources, mostly from groundwater (60 percent). Livestock withdrawals accounted for about 1 percent of total freshwater withdrawals for all uses excluding thermoelectric power. In 2010, more than 50 percent of the total withdrawals in the United States were accounted for by 12 States. California accounted for about 11 percent of the total withdrawals and 10 percent of freshwater withdrawals in the United States, predominantly for irrigation. Texas accounted for about 7 percent of total withdrawals, predominantly for thermoelectric power, irrigation, and public supply. Florida accounted for 18 percent of the total saline-water withdrawals in the United States, mostly from surface-water sources for thermoelectric power. Oklahoma and Texas accounted for about 70 percent of the total saline groundwater withdrawals in the United States, mostly for mining.

Circular

Estimated use of water in the United States in 2015

Water use in the United States in 2015 was estimated to be about 322 billion gallons per day (Bgal/d), which was 9 percent less than in 2010. The 2015 estimates put total withdrawals at the lowest level since before 1970, following the same overall trend of decreasing total withdrawals observed from 2005 to 2010. Freshwater withdrawals were 281 Bgal/d, or 87 percent of total withdrawals, and saline-water withdrawals were 41.0 Bgal/d, or 13 percent of total withdrawals. Fresh surface-water withdrawals (198 Bgal/d) were 14 percent less than in 2010, and fresh groundwater withdrawals (82.3 Bgal/day) were about 8 percent greater than in 2010. Saline surface-water withdrawals were 38.6 Bgal/d, or 14 percent less than in 2010. Total saline groundwater withdrawals in 2015 were 2.34 Bgal/d, mostly for mining use. Thermoelectric power and irrigation remained the two largest uses of water in 2015, and total withdrawals decreased for thermoelectric power but increased for irrigation. With­drawals in 2015 for thermoelectric power were 18 percent less and withdrawals for irrigation were 2 percent greater than in 2010. Similarly, other uses showed reductions compared to 2010, specifically public supply (–7 percent), self-supplied domestic (–8 percent), self-supplied industrial (–9 percent), and aquaculture (–16 percent). In addition to irrigation (2 percent), mining (1 percent) reported larger withdrawals in 2015 than in 2010. Livestock withdrawals remained essentially the same in 2015 compared to 2010 (0 percent change). Thermoelectric power, irrigation, and public-supply withdrawals accounted for 90 percent of total withdrawals in 2015. Withdrawals for thermoelectric power were 133 Bgal/d in 2015 and represented the lowest levels since before 1970. Surface-water withdrawals accounted for more than 99 percent of total thermoelectric-power withdrawals, and 72 percent of those surface-water withdrawals were from freshwater sources. Saline surface-water withdrawals for thermoelectric power accounted for 97 percent of total saline surface-water withdrawals for all uses. Thermoelectric-power withdrawals accounted for 41 percent of total withdrawals for all uses, and freshwater withdrawals for thermoelectric power accounted for 34 percent of the total freshwater withdrawals for all uses. Total consumptive use for thermoelectric power was 4.31 Bgal/d in 2015 or 3 percent of the total thermoelectric-power withdrawals. Irrigation withdrawals were 118 Bgal/d in 2015, an increase of 2 percent from 2010 (116 Bgal/d), but were approximately equal to withdrawals estimated in the 1960s. Irrigation withdrawals, all freshwater, accounted for 42 percent of total freshwater withdrawals for all uses and 64 percent of total freshwater withdrawals for all uses excluding thermoelectric power. Surface-water withdrawals (60.9 Bgal/d) accounted for 52 percent of the total irrigation withdrawals, or about 8 percent less than in 2010. Ground­water withdrawals for irrigation were 57.2 Bgal/d in 2015, about 16 percent more than in 2010. About 63,500 thousand acres (or 63.5 million acres) were irrigated in 2015, an increase from 2010 of about 1,130 thousand acres (2 percent). The number of acres irrigated using sprinkler and microirrigation systems accounted for 63 percent of the total irrigated lands in 2015. Total consumptive use for irrigation was 73.2 Bgal/d in 2015 or 62 percent of the total use (withdrawals and reclaimed wastewater). Public-supply withdrawals in 2015 were 39.0 Bgal/d, or 7 percent less than in 2010, continuing the declines observed from 2005 to 2010. Total population in the United States increased from 312.6 million people in 2010 to 325.0 million people in 2015, an increase of 4 percent. Public-supply withdrawals accounted for 14 percent of the total freshwater withdrawals for all uses and 21 percent of freshwater with­drawals for all uses, excluding thermoelectric power. The number of people that received potable water from public-supply facilities in 2015 was 283 million, or about 87 percent of the total United States population. This percentage is 1 percent greater than in 2010. Self-supplied domestic withdrawals were 3.26 Bgal/d, or 8 percent less than in 2010. More than 98 percent of the self-supplied domestic withdrawals were from groundwater sources. Self-supplied industrial withdrawals were 14.8 Bgal/d in 2015, a 9 percent decline from 2010, continuing the downward trend since the peak of 47 Bgal/d in 1970. Total self-supplied industrial withdrawals were 5 percent of total withdrawals for all uses and 8 percent of total withdrawals for all uses, excluding thermoelectric power. Most of the total self-supplied industrial withdrawals were from surface-water sources (82 percent), and nearly all (94 percent) of those surface-water withdrawals were from freshwater sources. Nearly all of the groundwater withdrawals for self-supplied industrial use (98 percent) were from freshwater sources. Total aquaculture withdrawals were 7.55 Bgal/d in 2015, or 16 percent less than in 2010, and surface water was the primary source (79 percent). Most of the surface-water withdrawals occurred at facilities that operated flow-through raceways, which returned the water to the source directly after use. Aquaculture withdrawals accounted for 2 percent of the total withdrawals for all uses and 4 percent of the total withdrawals for all uses, excluding thermoelectric. Total mining withdrawals in 2015 were 4.00 Bgal/d, or about 1 percent of total withdrawals from all uses and 2 percent of total withdrawals from all uses, excluding thermoelectric. Mining withdrawals increased 1 percent from 2010 to 2015. Groundwater withdrawals accounted for 72 percent of the total mining withdrawals, and most of the groundwater was saline (65 percent). Most (77 percent) of the surface-water withdrawals for mining was freshwater. Livestock withdrawals in 2015 were 2.00 Bgal/d, the same as in 2010. All livestock withdrawals were from freshwater sources, mostly from groundwater (62 percent). Livestock withdrawals accounted for about 1 percent of total freshwater withdrawals for all uses, excluding thermoelectric power. In 2015, more than 50 percent of the total withdrawals in the United States were accounted for by 12 States (California, Texas, Idaho, Florida, Arkansas, New York, Illinois, Colorado, North Carolina, Michigan, Montana, and Nebraska). California accounted for almost 9 percent of the total withdrawals and 9 percent of freshwater withdrawals in the United States, predominantly for irrigation. Texas accounted for almost 7 percent of total withdrawals, predominantly for thermoelectric power, irrigation, and public supply. Florida accounted for 23 percent of the total saline-water withdrawals in the United States, mostly from surface-water sources for thermoelectric power. Texas and California accounted for 59 percent of the total saline groundwater withdrawals in the United States, mostly for mining.

Circular

Water Use in Oklahoma 1950-2005

Comprehensive planning for water resources development and use in Oklahoma requires a historical perspective on water resources. The U.S. Geological Survey, in cooperation with the Oklahoma Water Resources Board, summarized the 1950-2005 water-use information for Oklahoma. This report presents 1950-2005 estimates of freshwater withdrawal for water use in Oklahoma by source and category in 5-year intervals. Withdrawal source was either surface water or groundwater. Withdrawal categories include: public supply, irrigation, livestock and aquaculture, thermoelectric-power generation (cooling water), domestic and commercial, and industrial and mining. Withdrawal data were aggregated and tabulated by county, major river basin, and principal aquifer. The purpose of this report is to summarize water-use data in Oklahoma through: (1) presentation of detailed information on freshwater withdrawals by source, county, major river basin, and principal aquifer for 2005; (2) comparison of water use by source, category, major river basin, and principal aquifer at 5-year intervals from 1990-2005; and (3) comparison of water use on a statewide basis by source and category at 5-year intervals from 1950-2005. Total withdrawals from surface-water and groundwater sources during 2005 were 1,559 million gallons per day-989 million gallons a day or 63 percent from surface-water sources and 570 million gallons per day or 37 percent from groundwater sources. The three largest water use categories were: public supply, 646 million gallons per day or 41 percent of total withdrawals; irrigation, 495 million gallons per day or 32 percent of total withdrawals; and livestock and aquaculture, 181 million gallons per day or 12 percent of total withdrawals. All other categories were 237 million gallons per day or 15 percent of total withdrawals. The influence of public supply on the total withdrawals can be seen in the eastern two-thirds of Oklahoma; whereas, the influence of irrigation on total withdrawals can be seen in the western third of Oklahoma. Surface-water sources were dominant in the eastern half of Oklahoma and groundwater sources were dominant in the western half of Oklahoma. Public supply withdrawals increased steadily from 1990-2000 and then decreased slightly in 2005, mainly because of a decrease in surface-water withdrawals. Irrigation withdrawals increased from 1990-1995 and then decreased steadily to 2005. Total livestock and aquaculture withdrawals steadily increased from 1990-2005. The largest increase in the other categories was for thermoelectric power generation that has steadily increased and almost doubled from 1990-2005. Surface-water sources have been increasing in importance from 1950-2005, in part because of the increasing percentage of surface-water for public supply as the total population of Oklahoma and population served by surface-water sources increased. Groundwater sources have been generally decreasing in importance as a percentage of total withdrawals in recent years. However, the magnitude of groundwater withdrawals was greatly dependent on irrigation withdrawals and specifically irrigated acreage in the panhandle.

Scientific Investigations Report

Estimates of public-supply, domestic, and irrigation water withdrawal, use, and trends in the Upper Rio Grande Basin, 1985 to 2015

The Rio Grande flows approximately 670 miles from its headwaters in the San Juan Mountains of south-central Colorado to Fort Quitman, Texas, draining the Upper Rio Grande Basin (URGB) study area of 32,000 square miles that includes parts of Colorado, New Mexico, and Texas. Parts of the basin extend into the United Mexican States (hereafter “Mexico”), where the Rio Grande forms the international boundary between Texas and the State of Chihuahua, Mexico. The URGB was chosen as a focus area study (FAS) for the U.S. Geological Survey (USGS) National Water Census (NWC) as part of the WaterSMART initiative. The objective of the USGS NWC under WaterSMART is to focus on the technical aspects of providing information and tools to stakeholders so that they can make informed decisions on water availability. This report contains water-use withdrawal estimates of groundwater and surface water for public-supply, self-supplied domestic, and irrigation water use for years 1985–2015 at 5-year intervals for the 22 drainage basins at the subbasin 8-digit hydrologic unit code (HUC-8) level. Data for additional categories of self-supplied industrial, mining, livestock, aquaculture, thermoelectric, and hydroelectric water use are provided in the accompanying data release to illustrate total withdrawals for the URGB. The additional category data are provided in this report only for the year 2015. Deliveries of water from public-supply systems to domestic users are included and are the only water-delivery data presented in this report. Consumptive use for irrigation is reported for all HUC-8 subbasins for 2015 and for select HUC-8s in the other years beginning in 1985 (the irrigation category includes irrigation for both crop and golf). Water transported outside of the URGB (interbasin transfers) is not included as part of the withdrawals and are not accounted for in any category of use within the URGB. Estimated total withdrawals for all the water-use categories (including hydroelectric) in 2015 as reported in the USGS compilations in the URGB were 3,152.10 million gallons per day (Mgal/d). Surface water was the dominant source of water used in the URGB, providing about 71 percent of total withdrawals. Nearly all withdrawals were from freshwater sources; there was a small amount of saline groundwater that was used for public supply and self-supplied industrial, which were all reported in Texas. The proportions of total 2015 withdrawals from States in the URGB are 46 percent each in Colorado and New Mexico and 8 percent in Texas. A comparison of 2015 water withdrawals for the URGB—for the categories of public supply, self-supplied domestic, self-supplied industrial, thermoelectric, irrigation, livestock, mining, aquaculture, and hydroelectric—showed that irrigation is the dominant water use, at 74 percent of total withdrawals. Other water-use categories in the URGB that use about 1 percent or greater of the total water use by volume are public supply (9 percent) and self-supplied domestic and aquaculture (each about 1 percent). This report focuses on the higher volume, consumptively used categories of public supply, self-supplied domestic, and irrigation. A discussion on basin population provides context for the categories of public-supply and self-supplied domestic water use. The population in the part of the basin in the United States grew from 1.36 to 2.26 million people between 1985 and 2015. With the city of Ciudad Juarez, Chihuahua, Mexico, included, the total population of the URGB grew from an estimated 2.01 to 3.66 million people between 1985 and 2015. The largest concentrations of population are in New Mexico, Texas, and Chihuahua, with 98 percent of the total number of people in the basin in 1985 and 99 percent of the total in 2015 residing in these states. Albuquerque, El Paso, and Ciudad Juarez are the largest cities in the basin. Total withdrawals for public supply in the URGB averaged 277 Mgal/d from 1985 to 2015. About 60 percent of the URGB total public-supply withdrawals occurred in New Mexico, which averaged 170 Mgal/d. Groundwater provided 92 and 70 percent of the total withdrawals for public supply in 1985 and 2015, respectively. Deliveries to domestic users from public suppliers are reported for all drainage basins and years, and account for part of the total public-supply withdrawals. In the URGB, domestic deliveries from public suppliers increased from 1985 to 1995; since 2005, domestic deliveries from public supply have declined. The total populations served by public suppliers in the URGB increased by 90 percent from 1985 to 2015. In the URGB, more people were served by public-supply systems than were self-supplied, and the percentage of people on public-supply systems ranged from 81 to 92 percent from 1985 to 2015. Total domestic withdrawals in the URGB (deliveries plus self-supply withdrawals) ranged from 177.49 to 234.83 Mgal/d and peaked in 2005. Domestic use decreased from 2005 to 2010 by 17 percent and remained less than 200 Mgal/d in 2015. The per-capita daily use for the entire URGB fluctuated between the reporting years, but overall, domestic per-capita use across the basin has declined 46 percent from 145 gallons per capita daily (gpcd) in 1985 to 79 gpcd in 2015. Total irrigation withdrawals in the URGB had a mean value of 2,767.66 Mgal/d from 1985 to 2015 and withdrawals peaked in 1995 at 3,416.84 Mgal/d. Over the 30-year period, irrigation source water in the URGB has ranged from 69 to 84 percent surface water, and the most surface water diverted in the basin for irrigation was in 1995. Groundwater withdrawals for irrigation have fluctuated but overall decreased by 13 percent between 2005 and 2015. Slightly more than one-half of total irrigation withdrawals within the URGB occurred in Colorado, with a mean of 57 percent from 1985 to 2015. From the peak of water withdrawals in 1995 to the conclusion of this study in 2015, total irrigation withdrawals across the study area decreased by 32 percent. The total number of irrigated lands in the URGB from 1985 to 2015 had a mean of about 800 thousand acres, and more irrigated lands were consistently located in the headwaters of the URGB in the San Luis Valley, Colorado than the remainder of the study basin. In the 30-year period, Colorado had a mean of 68 percent of total irrigated lands whereas irrigated acres in New Mexico had a mean of 26 percent and the remaining 7 percent were in Texas. Since 2000, the number of irrigated acres in the URGB has fluctuated, but overall has decreased by 12 percent. More land was irrigated with surface systems (surface irrigation includes flood, furrow, and gated pipe systems, hereafter collectively termed “surface”) in the URGB than with other irrigation system types. Across the 30-year period, from 62 to 88 percent of total irrigated lands had surface-system irrigation, and surface systems covered a mean of 69 percent of the URGB’s acres. Microirrigation systems, predominantly in New Mexico and Texas, compose 0.2 percent or less of the irrigated acres in the basin and were first reported in 1995. From 1985 to 2015, the surface systems decreased in the basin by about 38 percent, and the number of acres of sprinkler and microirrigation systems increased. Acres irrigated by sprinkler systems (predominately center pivot systems) have increased 179 percent from about 99 thousand acres in 1985 to 275 thousand acres in 2015. In this dataset, the number of sprinkler acres surpassed the number of surface irrigated acres in 2000. Within the San Luis Valley in Colorado, the acreage of surface irrigation has decreased, and sprinkler irrigation has increased over the 30-year period. In the New Mexico part of the URGB, surface irrigation is reported as the dominant system type, where irrigation by surface systems accounts for 97–98 percent of how water is provided to crops. As in New Mexico, crops in Texas are irrigated primarily by surface systems. The mean of the mean simulated actual evapotranspiration (ETa) for crops in 2015 across the basin was highest for durum wheat at an estimated 36.00 inches per year (in/yr), and lowest for vegetables at an estimated 19.48 in/yr. Alfalfa and irrigated grass pastures mean ETa had a mean of 31.4 and 27.58 in/yr, respectively, for the basin. Pecans and peppers, both signature crops in the Rio Grande Basin, each had a mean ETa of 30.67 and 30.38 in/yr of mean. In general, mean ETa values for crops were lower in the HUCs of the Colorado San Luis Valley (13010001, 13010002, 13010003 and 13010004) which are more northerly and at higher elevations. The mean ETa for crops increased in the HUCs that are more southerly and at lower elevations in the basin.

New Mexico

Genetic evidence for the presence of wild-caught sturgeons in commercial markets in Georgia

Sturgeons (Family: Acipenseridae) are among the most endangered taxa worldwide. Significant resources have been invested into the conservation of global sturgeon populations, including the development of commercial aquaculture programs. These programs are intended to improve conservation outcomes by reducing the harvest of wild populations while still meeting commercial demand for sturgeon products. However, there is growing concern that commercial aquaculture programs may contribute to wild population declines through continued, illegal harvest and the escape and/or release of captive individuals into wild environments. These concerns may be particularly acute in the country of Georgia which, despite its small territory and altered landscape, is a globally significant hotspot for sturgeon diversity. In order to understand the potential threat of captive culture on wild sturgeon populations in Georgia, we used mitochondrial DNA sequencing and microsatellite analyses to identify the species and origin of sturgeons encountered in commercial settings. Microsatellite analyses showed significant differentiation between wild and commercial Russian sturgeon populations and highlighted the potential for wild-caught individuals to be present in coastal markets in Georgia. The analyses of mitochondrial haplotypes also suggested that commercial markets may contain sturgeon species that are not native to the region. Overall, our results suggest that wild sturgeon populations may still be exploited to support captive aquaculture programs and commercial sales.

Diversity

A review of grass carp and related species literature on diet, behavior, toxicology, and physiology focused on informing development of controls for invasive grass carp populations in North America

Grass carp ( Ctenopharyngodon idella ) are globally important in aquaculture and aquatic vegetation control. However, escaped grass carp have established invasive populations. A targeted keyword search was performed on a carp (order: Cypriniformes) literature database maintained by the U.S. Geological Survey to identify literature relevant to grass carp. Additional sources cited in reviewed documents and provided by numerous reviewers were also included. There were three focus areas designed to provide support for invasive grass carp management: (1) diet and behavior; (2) physiological constraints, toxicity, and biology; and (3) gut physiology. Each focus area provides information to guide development of potential pathways for invasive grass carp control. Information from other carp species was used to fill in gaps where grass carp information was lacking and provide additional, potential research directions. Diet-related information included food selection and aquacultural diet formulations. Behavioral information included stimuli and non-physical barriers to attract, repel, or stop movement. Physiological constraints, toxicology, reproductive control, and biological control provide a research review for control options. Gut physiology and related control pathways provide knowledge to improve toxin or pathogen delivery. This review provides a basis for developing approaches and research for controlling invasive grass carp populations, aquaculture, and native population management.

Fishes

Toxicity of a traditional molluscicide to asian clam veligers

Aquaculture and hatchery industries are in need of effective control methods to reduce the risk of spreading aquatic invasive species, such as the Asian clam Corbicula fluminea , through aquaculture and hatchery activities. The planktonic nature of Asian clam veligers enables this life stage to enter water-based infrastructure undetected, including hatchery trucks used to stock fish. Once in hatchery trucks, veligers can disperse overland and establish in previously uninvaded habitats. As a result, there is a need to develop techniques that result in veliger mortality but do not harm fish. In September 2012, we conducted laboratory trials to determine if a molluscicide (750 mg/L potassium chloride and 25 mg/L formalin) commonly used to kill zebra mussel ( Dreissena polymorpha ) veligers in hatchery trucks can also effectively kill Asian clam veligers. We exposed Asian clam veligers to this molluscicide for 1, 3, and 5 h in each of two water types: deionized water and filtered lake water. We found ,20% mortality at the 1-h exposure period and 100% mortality at both the 3-h and 5-h exposure periods, regardless of water type. This laboratory study represents an important step toward reducing the spread of Asian clams by aquaculture facilities.

Journal of Fish and Wildlife Management

Local populations of eastern oyster from Louisiana differ in low salinity tolerance

Eastern oysters Crassostrea virginica support a critical commercial industry and provide many ecosystem services to coastal estuaries yet are currently threatened by changing estuarine conditions. A changing climate and the effects of river and coastal management are altering freshwater inflows into productive oyster areas, causing more frequent and extreme salinity exposure. Although eastern oysters are tolerant to a wide range of salinity means and variations, more frequent and extreme exposure to low salinity (<5‰) impacts oyster populations and aquaculture operations. This study assessed four Louisiana eastern oyster stocks to explore population-specific responses to low-salinity exposure. Hatchery-produced progeny (10–25 mm) were deployed in baskets kept off-bottom on longline systems in a low-salinity (mean ± 1 standard error of the mean daily salinity = 8.7 ± 0.2‰; range = 1.2–19.0‰) and a moderate-salinity (16.8 ± 0.3‰; 4.8–30.0‰) environment for 1 year, beginning in December 2019, with growth and mortality determined monthly. Significant differences in cumulative mortality between stocks at the end of the study were found at the low-salinity site, with the greatest increase in cumulative mortality occurring mid-July to mid-August. Mortality differences between stocks suggest that some eastern oyster populations (i.e., stocks) may be better suited to low salinity or low-salinity events than others. This difference may be attributed to similarity between site of origin and grow-out site conditions and/or to greater salinity variability and therefore higher phenotypic plasticity in some eastern oyster populations compared with others. The identification of oyster stocks able to survive under extreme low-salinity conditions may facilitate the development of “low-salinity-tolerant” broodstock to support aquaculture in areas experiencing and predicted to experience low-salinity events.

Louisiana

Genomic selection for low salinity tolerance in the eastern oyster Crassostrea virginica in Louisiana and Chesapeake Bay populations

The use of genomic selection (GS) to improve traits of interest in aquaculture species is growing with the availability of genomic resources for those species. The eastern oyster , Crassostrea virginica , is a major aquaculture product and keystone species along the U.S. mid-Atlantic and Gulf coasts. Populations and production of C. virginica are threatened by several environmental stressors, and in certain coastal regions, episodic low salinity conditions have contributed to mass mortality events. Here we examined the potential for genomic selection to improve tolerance to extreme low salinity (≤ 2) in eastern oysters and report the evaluation of GS models for C. virginica from two regions- Louisiana and Chesapeake Bay. Tissue samples from both mortalities and survivors of the lab-based salinity challenges (salinity 2, 28 °C) were genotyped on the 66 K C. virginica SNP array. We performed a genome wide association study (GWAS) for both challenges and then evaluated the effects of several different parameters on GS prediction accuracy, including model type (GBLUP, Bayesian, and weighted), data filtering, Bayesian modelling parameters, and trait encoding (Gaussian, ordinal, and censored). GWAS revealed a significant region on chromosome 1 in the Chesapeake animals while the Louisiana animals showed only a few significantly associated loci. GS model type had no significant impact on prediction accuracy in the Chesapeake animals, but a large impact in the Louisiana animals. Likewise, prediction accuracy remained consistent in the Chesapeake Bay challenge with as few as 5000 markers, while accuracy in the Louisiana challenge began to decline with fewer than 25,000 markers. This likely reflects the lower relatedness among the Louisiana individuals due to unintended wild overset. Overall, with moderate prediction accuracies (∼0.45–0.55) in both regions, GS shows the potential to improve low salinity tolerance in eastern oysters. This will be beneficial to selective breeding programs and restoration efforts in regions where this trait improves oyster survival.

Louisiana, Maryland, Virginia