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Results for “Functional Ecology”

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At least 1,063 records · Page 59Linked to original sources
USGS2022

Using piecewise regression to identify biological phenomena in biotelemetry datasets

1. Technological advances in the field of animal tracking have greatly expanded the potential to remotely monitor animals, opening the door to exploring how animals shift their behavior over time or respond to external stimuli. A wide variety of animal-borne sensors can provide information on an animal’s location, movement characteristics, external environmental conditions, and internal physiological status. 2. Here, we demonstrate how piecewise regression can be used to identify the presence and timing of potential shifts in a variety of biological responses using GPS telemetry and other biologging data streams. Different biological latent states can be inferred by partitioning a time-series into multiple segments based on changes in modeled responses (e.g., their mean, variance, trend, degree of autocorrelation) and specifying a unique model structure for each interval. 3. We provide six example applications highlighting a variety of taxonomic species, data streams, timescales and biological phenomena. These examples include a short-term behavioural response (flee and return) by a trumpeter swan Cygnus buccinator following a GPS collar deployment; remote identification of parturition based on movements by a pregnant moose Alces alces ; a physiological response (spike in heart-rate) in a black bear Ursus americanus to a stressful stimulus(presence of a drone); a mortality event of a trumpeter swan signalled by changes in collar temperature and overall dynamic body acceleration; an unsupervised method for identifying the onset, return, duration and staging use of sandhill crane Antigone canadensis migration; and estimation of the transition between incubation and brood-rearing (i.e. hatching) for a breeding trumpeter swan. 4. We implement analyses using the MCP package in R, which provides functionality for specifying and fitting a wide variety of user-defined model structures in a Bayesian framework and methods for assessing and comparing models using information criteria and cross-validation measures.

Journal of Animal Ecology↗
USGS2011

Seasonal movements of non-native lake trout in a connected lake and river system

Non-native lake trout, Salvelinus namaycush (Walbaum), threaten native salmonid populations in the western United States. Effective management of lake trout requires understanding movements within connected lake and river systems. This study determined the seasonal movements of subadult lake trout in the Flathead River upstream of Flathead Lake, Montana, USA using radio telemetry. The spatiotemporal distribution of lake trout in the river was related to water temperature. Lake trout were detected in the river primarily during autumn, winter and spring, when water temperatures were cool. By contrast, fewer were detected when temperatures were warmest during summer and during high spring flows. Downriver movements to Flathead Lake occurred throughout autumn and winter when water temperature decreased below 5 °C, and in late spring as water temperature rose towards 15 °C and river discharge declined following spring runoff. Upriver movements occurred primarily in October, which coincided with migrations of prey fishes. These results suggest that lake trout are capable of moving throughout connected river and lake systems (up to 230 km) and that warm water temperatures function as an impediment to occupancy of the river during summer. Controlling source populations and maintaining natural water temperatures may be effective management strategies for reducing the spread of non-native lake trout.

Montana↗
USGS2003

Management implications of the ecology of free-roaming horses in semiarid ecosystems of the western United States

Compared to other ungulates of North America, free - roaming horses ( Equus caballus ) possess a unique evolutionary history that has given rise to a distinct suite of behavioral, morphological, and physiological traits. Because of their unique combination of cecal digestion, an elongate head with flexible lips, and non-uniform use of the landscape, horses represent a unique disturbance agent in semi-arid ecosystems of the western United States . Consequently, it is inappropriate to assume that influences of horses on the structure, composition, function, and pattern of arid and semi-arid ecosystems will mirror influences of cattle or other artiodactyls. Although management areas for free - roaming horses occupy 18.6 million ha of land across western North America, we know relatively little about how western ecosystems and their components have responded to this uniquely managed ungulate. I draw on my research of horse habitats in the western Great Basin (U.S.A.) to examine predictions of horses ' unique influence, and advocate for continued research to refine our understanding of synecological relationships among horses and diverse ecosystem components in arid and semi-arid regions.

Wildlife Society Bulletin↗
USGS2019

Effect of light intensity and substrate type on siscowet lake trout (Salvelinus namaycush siscowet) predation on deepwater sculpin (Myoxocephalus thompsonii)

Foraging characteristics of siscowet lake trout ( Salvelinus namaycush siscowet ) on deepwater sculpin ( Myoxocephalus thompsonii ) were studied under ecologically relevant downwelling light intensities (9.0 × 10 8 to 1.62 × 10 11 photons m −2 s −1 ) and emission spectrum (500–510 nm) on varying substrates (gravel, sand, and black fabric). Siscowet reaction distance within our trials increased with light intensity up to 6.0 × 10 9 photons m −2 s −1 , after which reaction distance remained constant with additional increases in light intensity following the Michaelis–Menten saturation function. Reaction distances were not affected by substrate type under any light intensity. The number of prey captures also increased with increasing light intensity, with most orientations toward prey occurring within the siscowet’s forward sector (± 0°–60°, where 0° represents the tip of the siscowet rostrum). Finally, the overall probability of prey capture was positively related to reaction distance at each light intensity. Results suggest that siscowet can visually forage on benthic prey at great depth in Lake Superior, and reaction distance (≤ 27 cm) to sculpin may not diminish until depths exceed 200 m (6.00 × 10 9 photons m −2 s −1 ).

Lake Superior↗
USGS2016

Hydrologic exchange flows and their ecological consequences in river corridors

The actively flowing waters of streams and rivers remain in close contact with surrounding off-channel and subsurface environments. These hydrologic linkages between relatively fast flowing channel waters, with more slowly flowing waters off-channel and in the subsurface, are collectively referred to as hydrologic exchange flows (HEFs). HEFs include surface exchange with a channel’s marginal areas and subsurface flow through the streambed (hyporheic flow), as well as storm-driven bank storage and overbank flows onto floodplains. HEFs are important, not only for storing water and attenuating flood peaks, but also for their role in influencing water conservation, water quality improvement, and related outcomes for ecological values and services of aquatic ecosystems. Biogeochemical opportunities for chemical transformations are increased by HEFs as a result of the prolonged contact between flowing waters and geochemically and microbially active surfaces of sediments and vegetation. Chemical processing is intensified and water quality is often improved by removal of excess nutrients, metals, and organic contaminants from flowing waters. HEFs also are important regulators of organic matter decomposition, nutrient recycling, and stream metabolism that helps establish a balanced and resilient aquatic food web. The shallow and protected storage zones associated with HEFs support nursery and feeding areas for aquatic organisms that sustain aquatic biological diversity. Understanding of these varied roles for HEFs has been driven by the related disciplines of stream ecology, fluvial geomorphology, surface-water hydraulics, and groundwater hydrology. A current research emphasis is on the role that HEFs play in altered flow regimes, including restoration to achieve diverse goals, such as expanding aquatic habitats and managing dissolved and suspended river loads to reduce over-fertilization of coastal waters and offset wetland loss. New integrative concepts and models are emerging (eg, hydrologic connectivity) that emphasize HEF functions in river corridors over a wide range of spatial and temporal scales.

Book chapter↗
USGS2020

The role of sand lances (Ammodytes sp.) in the Northwest Atlantic Ecosystem: A synthesis of current knowledge with implications for conservation and management

The American sand lance ( Ammodytes americanus , Ammodytidae) and the Northern sand lance ( A. dubius , Ammodytidae) are small forage fishes that play an important functional role in the Northwest Atlantic Ocean (NWA). The NWA is a highly dynamic ecosystem currently facing increased risks from climate change, fishing and energy development. We need a better understanding of the biology, population dynamics and ecosystem role of Ammodytes to inform relevant management, climate adaptation and conservation efforts. To meet this need, we synthesized available data on the (a) life history, behaviour and distribution; (b) trophic ecology; (c) threats and vulnerabilities; and (d) ecosystem services role of Ammodytes in the NWA. Overall, 72 regional predators including 45 species of fishes, two squids, 16 seabirds and nine marine mammals were found to consume Ammodytes . Priority research needs identified during this effort include basic information on the patterns and drivers in abundance and distribution of Ammodytes , improved assessments of reproductive biology schedules and investigations of regional sensitivity and resilience to climate change, fishing and habitat disturbance. Food web studies are also needed to evaluate trophic linkages and to assess the consequences of inconsistent zooplankton prey and predator fields on energy flow within the NWA ecosystem. Synthesis results represent the first comprehensive assessment of Ammodytes in the NWA and are intended to inform new research and support regional ecosystem‐based management approaches.

Northwest Atlantic↗
USGS2015

Towards understanding resprouting at the global scale

Understanding and predicting plant response to disturbance is of paramount importance in our changing world. Resprouting ability is often considered a simple qualitative trait and used in many ecological studies. Our aim is to show some of the complexities of resprouting while highlighting cautions that need be taken in using resprouting ability to predict vegetation responses across disturbance types and biomes. There are marked differences in resprouting depending on the disturbance type, and fire is often the most severe disturbance because it includes both defoliation and lethal temperatures. In the Mediterranean biome, there are differences in functional strategies to cope with water deficit between resprouters (dehydration avoiders) and nonresprouters (dehydration tolerators); however, there is little research to unambiguously extrapolate these results to other biomes. Furthermore, predictions of vegetation responses to changes in disturbance regimes require consideration not only of resprouting, but also other relevant traits (e.g. seeding, bark thickness) and the different correlations among traits observed in different biomes; models lacking these details would behave poorly at the global scale. Overall, the lessons learned from a given disturbance regime and biome (e.g. crown-fire Mediterranean ecosystems) can guide research in other ecosystems but should not be extrapolated at the global scale.

New Phytologist↗
USGS2018

Changes in aquatic prey resources in response to estuary restoration in Willapa Bay, southwestern Washington

Executive Summary The ongoing restoration of more than 200 hectares of estuarine habitat at Willapa National Wildlife Refuge, southwestern Washington, is expected to benefit a variety of species, including salmonids that use estuarine and tidal marshes as rearing and feeding areas as well as migratory waterbirds. During March–June 2014 and 2015, U.S. Geological Survey Western Ecological Research Center (WERC) initiated a study to assess aquatic prey resources, in coordination with a separate but parallel fish study done by the Columbia River Estuary Study Taskforce. WERC collected data on environmental variables and invertebrate community structure, and the taskforce provided salmonid diet data at restored (Lewis Stream and Porter Point) and reference (Greenhead Slough and Ellsworth Creek) sites. We analyzed these data to determine the functional capacity of the estuary for supporting invertebrate prey resources for fish following restoration. The results of our analyses were as follows: Water temperatures were roughly 0.74 degrees Celsius warmer in 2015 than in 2014 at all sites, with potential consequences for salmonid bioenergetics in June and July. Mudflat was colonized by low marsh species such as pickleweed from 2014 to 2015 at restored Lewis Stream. Vegetation community structure remained stable at Greenhead Slough, Ellsworth Creek, and Porter Point in both years, and consisted of halophilic sedges (for example, Carex lyngbyei ) and saltgrass ( Distichlis spicata ). Benthic invertebrate community structure consisted of Polychaeta, Nematoda, Oligochaeta, Amphipoda, and Diptera larvae, all of which contribute to the foraging capacity of juvenile salmon and migratory shorebirds. Benthic invertebrate biomass increased as much as 30-fold at some sites from 2014 to 2015. Terrestrial invertebrate community structure was dominated by Dipteran flies, especially at restored Lewis Stream, which primarily was unvegetated in 2014. Other key taxa included Hemiptera, Arachnida, and Collembola. Aquatic invertebrate prey consisted of planktonic taxa and terrestrial invertebrate drift that fell into the water column from overhanging vegetation. The restored Porter Point had markedly fewer Copepoda, but had the highest levels of neuston biomass primarily due to Dipteran drift (terrestrial flies that fell into the water column). Average proportion similarity index (PSI) values between salmon diet and invertebrate prey availability were relatively low at all sites (<0.1), but were highest at the restored Lewis Stream (0.105±0.102). This likely was influenced by the predominance of Diptera in the surrounding habitat and in the diets of juvenile Chinook and chum salmon ( Oncorhynchus tshawytscha and O. keta , respectively). The invasive New Zealand mud snail ( Potamopyrgus antipodarum ) was detected at both Lewis Stream (8 out of 34 aquatic and benthic samples) and Porter Point (1 out of 32 aquatic and benthic samples) restoration sites, but not at reference sites Greenhead Slough or Ellsworth Creek. This invasive species has been observed throughout the Pacific Northwest coastline is not palatable to most fish (including salmonids) and may even be detrimental to some fish species. Although invertebrate communities differed between restored and reference sites, invertebrate biomass at the restored Lewis Stream and Porter Point was like or exceeded that of reference sites Greenhead Slough and Ellsworth Creek. The restored sites are still in the early phases of restoration and succession, but our study suggests they have the capacity to support foraging wildlife species such as salmonids.

Washington↗
USGS2016

Movement reveals scale dependence in habitat selection of a large ungulate

Ecological processes operate across temporal and spatial scales. Anthropogenic disturbances impact these processes, but examinations of scale dependence in impacts are infrequent. Such examinations can provide important insight to wildlife–human interactions and guide management efforts to reduce impacts. We assessed spatiotemporal scale dependence in habitat selection of mule deer ( Odocoileus hemionus ) in the Piceance Basin of Colorado, USA, an area of ongoing natural gas development. We employed a newly developed animal movement method to assess habitat selection across scales defined using animal-centric spatiotemporal definitions ranging from the local (defined from five hour movements) to the broad (defined from weekly movements). We extended our analysis to examine variation in scale dependence between night and day and assess functional responses in habitat selection patterns relative to the density of anthropogenic features. Mule deer displayed scale invariance in the direction of their response to energy development features, avoiding well pads and the areas closest to roads at all scales, though with increasing strength of avoidance at coarser scales. Deer displayed scale-dependent responses to most other habitat features, including land cover type and habitat edges. Selection differed between night and day at the finest scales, but homogenized as scale increased. Deer displayed functional responses to development, with deer inhabiting the least developed ranges more strongly avoiding development relative to those with more development in their ranges. Energy development was a primary driver of habitat selection patterns in mule deer, structuring their behaviors across all scales examined. Stronger avoidance at coarser scales suggests that deer behaviorally mediated their interaction with development, but only to a degree. At higher development densities than seen in this area, such mediation may not be possible and thus maintenance of sufficient habitat with lower development densities will be a critical best management practice as development expands globally.

Colorado↗
USGS2024

Recovery of working grasslands following a megafire in the southern mixed-grass prairie

While fire is a necessary ecological driver for grassland systems, Great Plains grasslands have undergone extensive land use change following European settlement (conversion, fragmentation, fire suppression, intensive grazing, etc.). Recent studies have documented the benefits of re-introducing fire to grasslands, but work has largely focused on small-scale, low-intensity fire, often at a pasture scale (i.e., prescribed fire). Over the last 30–40 years, the size and frequency of wildfires in the Great Plains has increased due to long-term fire suppression, woody encroachment, and climate change, resulting in megafires (wildfire >40,000 ha). While there is a wealth of information regarding effects of prescribed fire on Great Plains grasslands, knowledge of how large megafire events affect modern, fragmented working grasslands (i.e., grazed grasslands) is lacking and needed in the face of increasing megafire activity. To assess grassland response and recovery following a 2017 megafire (~254,000 ha), we compared vegetation characteristics pre- (2014–2015) and post-fire (2018–2019) in the mixed-grass prairie of Kansas, USA. We examined linkages between vegetation characteristics and a metric of burn severity (differenced normalized burn ratio [dNBR]) and evaluated megafire effects on limiting reproductive habitat for a declining grassland species, the lesser prairie-chicken ( Tympanuchus pallidicinctus ). One-year post-fire, we documented increased bare ground (+59%) and decreased visual obstruction (−39%), litter depth (−31%), and forb cover (−35%). Decreased visual obstruction and increased bare ground led to an 81% decrease of lesser prairie-chicken nest habitat in the first-year post-fire, but grassland structure, functional group cover, and available nest habitat largely recovered 2.5 years post-fire. Recovery to pre-fire conditions 2.5 years post-fire was primarily due to elevated growing season precipitation received in the years following the fire (>700 mm/year). Percent cover of grass (β = 0.38) and bare ground (β = −0.36) exhibited the strongest relationships with burn severity pre-fire, but overall grassland structure and functional group cover were not strongly influenced dNBR burn severity post-fire. While our results suggested that recovering grasslands were more homogenous due to the large size of megafire, working grasslands in the mixed-grass prairie appeared largely resilient to the effects of megafire.

Kansas, Oklahoma↗
USGS2011

Fire frequency, area burned, and severity: A quantitative approach to defining a normal fire year

Fire frequency, area burned, and fire severity are important attributes of a fire regime, but few studies have quantified the interrelationships among them in evaluating a fire year. Although area burned is often used to summarize a fire season, burned area may not be well correlated with either the number or ecological effect of fires. Using the Landsat data archive, we examined all 148 wildland fires (prescribed fires and wildfires) >40 ha from 1984 through 2009 for the portion of the Sierra Nevada centered on Yosemite National Park, California, USA. We calculated mean fire frequency and mean annual area burned from a combination of field- and satellite-derived data. We used the continuous probability distribution of the differenced Normalized Burn Ratio (dNBR) values to describe fire severity. For fires >40 ha, fire frequency, annual area burned, and cumulative severity were consistent in only 13 of 26 years (50 %), but all pair-wise comparisons among these fire regime attributes were significant. Borrowing from long-established practice in climate science, we defined “fire normals” to be the 26 year means of fire frequency, annual area burned, and the area under the cumulative probability distribution of dNBR. Fire severity normals were significantly lower when they were aggregated by year compared to aggregation by area. Cumulative severity distributions for each year were best modeled with Weibull functions (all 26 years, r 2 ≥ 0.99; P < 0.001). Explicit modeling of the cumulative severity distributions may allow more comprehensive modeling of climate-severity and area-severity relationships. Together, the three metrics of number of fires, size of fires, and severity of fires provide land managers with a more comprehensive summary of a given fire year than any single metric.

Wyoming↗
USGS2023

Wind-energy development alters pronghorn migration at multiple scales

Migration is a critical behavioral strategy necessary for population persistence and ecosystem functioning, but migration routes have been increasingly disrupted by anthropogenic activities, including energy development. Wind energy is the world's fastest growing source of electricity and represents an important alternative to hydrocarbon extraction, but its effects on migratory species beyond birds and bats are not well understood. We evaluated the effects of wind-energy development on pronghorn migration, including behavior and habitat selection, to assess potential effects on connectivity and other functional benefits including stopovers. We monitored GPS-collared female pronghorn from 2010 to 2012 and 2018 to 2020 in south-central Wyoming, USA, an area with multiple wind-energy facilities in various stages of development and operation. Across all time periods, we collected 286 migration sequences from 117 individuals, including 121 spring migrations, 123 fall migrations, and 42 facultative winter migrations. While individuals continued to migrate through wind-energy facilities, pronghorn made important behavioral adjustments relative to turbines during migration. These included avoiding turbines when selecting stopover sites in spring and winter, selecting areas farther from turbines at a small scale in spring and winter, moving more quickly near turbines in spring (although pronghorn moved more slowly near turbines in the fall), and reducing fidelity to migration routes relative to wind turbines under construction in both spring and fall. For example, an increase in distance to turbine from 0 to 1 km translated to a 33% and 300% increase in the relative probability of selection for stopover sites in spring and winter, respectively. The behavioral adjustments pronghorn made relative to wind turbines could reduce the functional benefits of their migration, such as foraging success or the availability of specific routes, over the long term.

Wyoming↗
USGS2023

Conserving habitat for migratory ungulates: How wide is a migration corridor?

Conserving migratory ungulates relies on the analysis of GPS collar data and associated maps of migration corridors to inform management and policy actions. Current methods for identifying migratory corridors use complex statistical models designed to account for movement uncertainty rather than estimating the amount of space required by animals to migrate. Furthermore, such methods can complicate conservation efforts by producing highly variable corridor widths and non-contiguous corridors that do not fully connect seasonal ranges. To remedy, we propose an intuitive line buffer approach for delineating individual migration corridors that is simple to implement and focuses on the functional corridor widths needed by migratory ungulates. By buffering a line that connects successive GPS locations, we can delineate individual migration corridors with consistent widths that are robust to variable parameters (GPS fix rate, travel speed, tortuosity) and provide contiguous connection between seasonal ranges. Using a combination of expert knowledge, simulation and 10-min GPS collar data collected from mule deer ( Odocoileus hemionus ) and pronghorn ( Antilocapra americana ), we suggest 400–600 m are reasonable estimates of functional migration corridor widths for individuals of those species. Synthesis and applications . Our line buffer approach is intended to simplify migration corridor delineation, improve transparency and encourage a broader discussion of functional corridor widths. These considerations help advance efforts to conserve habitat within migration corridors and prioritize conservation efforts within a single corridor or across multiple corridors.

Journal of Applied Ecology↗
USGS2012

Nematomorph parasites indirectly alter the food web and ecosystem function of streams through behavioural manipulation of their cricket hosts.

Nematomorph parasites manipulate crickets to enter streams where the parasites reproduce. These manipulated crickets become a substantial food subsidy for stream fishes. We used a field experiment to investigate how this subsidy affects the stream community and ecosystem function. When crickets were available, predatory fish ate fewer benthic invertebrates. The resulting release of the benthic invertebrate community from fish predation indirectly decreased the biomass of benthic algae and slightly increased leaf break-down rate. This is the first experimental demonstration that host manipulation by a parasite can reorganise a community and alter ecosystem function. Nematomorphs are common, and many other parasites have dramatic effects on host phenotypes, suggesting that similar effects of parasites on ecosystems might be widespread.

Ecology Letters↗
USGS2017

Climate change refugia and habitat connectivity promote species persistence

Background Climate change refugia, areas buffered from climate change relative to their surroundings, are of increasing interest as natural resource managers seek to prioritize climate adaptation actions. However, evidence that refugia buffer the effects of anthropogenic climate change is largely missing. Methods Focusing on the climate-sensitive Belding’s ground squirrel ( Urocitellus beldingi ), we predicted that highly connected Sierra Nevada meadows that had warmed less or shown less precipitation change over the last century would have greater population persistence, as measured by short-term occupancy, fewer extirpations over the twentieth century, and long-term persistence measured through genetic diversity. Results Across California, U. beldingi were more likely to persist over the last century in meadows with high connectivity that were defined as refugial based on a suite of temperature and precipitation factors. In Yosemite National Park, highly connected refugial meadows were more likely to be occupied by U. beldingi . More broadly, populations inhabiting Sierra Nevada meadows with colder mean winter temperatures had higher values of allelic richness at microsatellite loci, consistent with higher population persistence in temperature-buffered sites. Furthermore, both allelic richness and gene flow were higher in meadows that had higher landscape connectivity, indicating the importance of metapopulation processes. Conversely, anthropogenic refugia, sites where populations appeared to persist due to food or water supplementation, had lower connectivity, genetic diversity, and gene flow, and thus might act as ecological traps. This study provides evidence that validates the climate change refugia concept in a contemporary context and illustrates how to integrate field observations and genetic analyses to test the effectiveness of climate change refugia and connectivity. Conclusions Climate change refugia will be important for conserving populations as well as genetic diversity and evolutionary potential. Our study shows that in-depth modeling paired with rigorous fieldwork can identify functioning climate change refugia for conservation.

California↗
USGS2006

Modeling habitat distribution from organism occurrences and environmental data: Case study using anemonefishes and their sea anemone hosts

We demonstrate the KGSMapper (Kansas Geological Survey Mapper), a straightforward, web-based biogeographic tool that uses environmental conditions of places where members of a taxon are known to occur to find other places containing suitable habitat for them. Using occurrence data for anemonefishes or their host sea anemones, and data for environmental parameters, we generated maps of suitable habitat for the organisms. The fact that the fishes are obligate symbionts of the anemones allowed us to validate the KGSMapper output: we were able to compare the inferred occurrence of the organism to that of the actual occurrence of its symbiont. Characterizing suitable habitat for these organisms in the Indo-West Pacific, the region where they naturally occur, can be used to guide conservation efforts, field work, etc.; defining suitable habitat for them in the Atlantic and eastern Pacific is relevant to identifying areas vulnerable to biological invasions. We advocate distinguishing between these 2 sorts of model output, terming the former maps of realized habitat and the latter maps of potential habitat. Creation of a niche model requires adding biotic data to the environmental data used for habitat maps: we included data on fish occurrences to infer anemone distribution and vice versa. Altering the selection of environmental variables allowed us to investigate which variables may exert the most influence on organism distribution. Adding variables does not necessarily improve precision of the model output. KGSMapper output distinguishes areas that fall within 1 standard deviation (SD) of the mean environmental variable values for places where members of the taxon occur, within 2 SD, and within the entire range of values; eliminating outliers or data known to be imprecise or inaccurate improved output precision mainly in the 2 SD range and beyond. Thus, KGSMapper is robust in the face of questionable data, offering the user a way to recognize and clean such data. It also functions well with sparse datasets. These features make it useful for biogeographic meta-analyses with the diverse, distributed datasets that are typical for marine organisms lacking direct commercial value. ?? Inter-Research 2006.

Marine Ecology Progress Series↗
USGS2009

The ecology, restoration, and management of southeastern floodplain ecosystems: A synthesis

Floodplain ecosystems of the southeastern United States provide numerous services to society, but hydrologic and geomorphic alterations, agricultural practices, water quality and availability, and urban development continue to challenge restorationists and managers at multiple spatial and temporal scales. These challenges are further exacerbated by tremendous uncertainty regarding climate and land use patterns and natural variability in these systems. The symposium from which the papers in 2009 ensued was organized to provide a critical evaluation of current natural resource restoration and management practices to support the sustainability of floodplain ecosystem functions in the southeastern United States. In this paper we synthesize these concepts and evaluate restoration and conservation techniques in light of our understanding of these ecosystems. We also discuss current and future challenges and attempt to identify new approaches that may facilitate the long-term sustainability of southeastern floodplain systems. We conclude that integration of disciplines and approaches is necessary to meet the floodplain conservation challenges of the coming century. Integration will not only include purposeful dialogue between interdisciplinary natural resource professionals, but it also is necessary to sincerely engage the public about goals, objectives, and desirable outcomes of floodplain ecosystem restoration.

Southeastern Floodplain systems↗
USGS1988

The ecology of the soft-bottom benthos of San Francisco Bay: a community profile

This profile, part of a series of profiles concerning coastal habitats of the United States, is a detailed examination of the soft-bottom benthos of San Francisco Bay. A U.S. Fish and Wildlife Service and California Department of Fish and Game report (1979) entitled "Protection and Restoration of San Francisco Bay Fish and Wildlife Habitat" provides clear recognition of the importance of intertidal and subtidal soft-bottom habitats and their associated organisms to the bay's birds and fishes and to the overall functioning of the estuary. The purpose of this profile is to provide a description of the structure and functioning of the benthic community in San Francisco Bay (exclusive of its tidal marshes, which are discussed by M. Josselyn [1983] in another profile). The habitats covered in this volume include all nonvegetated soft-bottom intertidal and subtidal areas of the bay between the Golden Gate and the mouths of the Sacramento and San Joaquin Rivers to the northeast, and to the southern extremity of the bay. The profile provides a reference to the scientific information concerning the animals and plants of the bay's benthic communities, their importance to the bay ecosystem, and their value as a resource measured in human terms. Because there have been few process-oriented studies of the benthos of San Francisco Bay (e.g., field and laboratory rate-measurement experiments), the material presented herein is largely descriptive. Nonetheless, we have described the processes that interconnect the various physical, chemical, and biological components of the benthic environment, and the important couplings between this environment and the water column above, with reference to research results from other estuaries where necessary. We consider the role of the benthic community as a food source for fish, aquatic birds, and humans; as a consumer or degrader of organic materials including wastes; as a recycler of minerals and nutrients; and as an accumulator of pollutants.

California↗