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At least 1,063 records · Page 59Linked to original sources

USGS2004

Potential exposure of larval and juvenile delta smelt to dissolved pesticides in the Sacramento-San Joaquin Delta, California

The San Francisco Estuary is critical habitat for delta smelt Hypomesus transpacificus, a fish whose abundance has declined greatly since 1983 and is now listed as threatened. In addition, the estuary receives drainage from the Central Valley, an urban and agricultural region with intense and diverse pesticide usage. One possible factor of the delta smelt population decline is pesticide toxicity during vulnerable larval and juvenile stages, but pesticide concentrations are not well characterized in delta smelt spawning and nursery habitat. The objective of this study was to estimate the potential exposure of delta smelt during their early life stages to dissolved pesticides. For 3 years (1998-2000), water samples from the Sacramento-San Joaquin Delta were collected during April-June in coordination with the California Department of Fish and Game's delta smelt early life stage monitoring program. Samples were analyzed for pesticides using solid-phase extraction and gas chromatography/mass spectrometry. Water samples contained multiple pesticides, ranging from 2 to 14 pesticides in each sample. In both 1999 and 2000, elevated concentrations of pesticides overlapped in time and space with peak densities of larval and juvenile delta smelt. In contrast, high spring outflows in 1998 transported delta smelt away from the pesticide sampling sites so that exposure could not be estimated. During 2 years, larval and juvenile delta smelt were potentially exposed to a complex mixture of pesticides for a minimum of 2-3 weeks. Although the measured concentrations were well below short-term (96-h) LC50 values for individual pesticides, the combination of multiple pesticides and lengthy exposure duration could potentially have lethal or sublethal effects on delta smelt, especially during early larval development.

American Fisheries Society Symposium↗

USGS2004

Modeling a three-dimensional river plume over continental shelf using a 3D unstructured grid model

River derived fresh water discharging into an adjacent continental shelf forms a trapped river plume that propagates in a narrow region along the coast. These river plumes are real and they have been observed in the field. Many previous investigations have reported some aspects of the river plume properties, which are sensitive to stratification, Coriolis acceleration, winds (upwelling or downwelling), coastal currents, and river discharge. Numerical modeling of the dynamics of river plumes is very challenging, because the complete problem involves a wide range of vertical and horizontal scales. Proper simulations of river plume dynamics cannot be achieved without a realistic representation of the flow and salinity structure near the river mouth that controls the initial formation and propagation of the plume in the coastal ocean. In this study, an unstructured grid model was used for simulations of river plume dynamics allowing fine grid resolution in the river and in regions near the coast with a coarse grid in the far field of the river plume in the coastal ocean, in the vertical, fine fixed levels were used near the free surface, and coarse vertical levels were used over the continental shelf. The simulations have demonstrated the uniquely important role played by Coriolis acceleration. Without Coriolis acceleration, no trapped river plume can be formed no matter how favorable the ambient conditions might be. The simulation results show properties of the river plume and the characteristics of flow and salinity within the estuary; they are completely consistent with the physics of estuaries and coastal oceans.

Conference Paper↗

USGS2011

Effect of dietary salt on migration and survival of yearling steelhead produced at Iron Gate Hatchery, Klamath River, 2009

We surgically implanted radio transmitters into 30 hatchery yearling steelhead (Oncorhynchus mykiss) released from Iron Gate Hatchery during the spring of 2009 to improve our understanding of the effect of dietary salt on their out-migration and survival. Steelhead yearlings were divided into two feed treatments to test the efficacy of a salt-enriched feed in promoting out-migration. Fish were fed either their regular diet (control treatment) or a salt-enriched diet (test treatment) for 38 d prior to their release. We implanted 15 fish of each treatment with radio transmitters for a total of 30 tagged individuals. Nine of the radio-tagged steelhead (four of the control treatment; five of the test treatment) completed their downstream migration to the estuary within the 60-d operational period of the tags. Tagged fish migrated from the hatchery release site to the estuary in an average of 45 d. Neither migration nor survival differed between diet treatments, but small sample size and the relatively short duration of this study limit the conclusiveness of our findings.

California↗

USGS1988

The ecology of the soft-bottom benthos of San Francisco Bay: a community profile

This profile, part of a series of profiles concerning coastal habitats of the United States, is a detailed examination of the soft-bottom benthos of San Francisco Bay. A U.S. Fish and Wildlife Service and California Department of Fish and Game report (1979) entitled "Protection and Restoration of San Francisco Bay Fish and Wildlife Habitat" provides clear recognition of the importance of intertidal and subtidal soft-bottom habitats and their associated organisms to the bay's birds and fishes and to the overall functioning of the estuary. The purpose of this profile is to provide a description of the structure and functioning of the benthic community in San Francisco Bay (exclusive of its tidal marshes, which are discussed by M. Josselyn [1983] in another profile). The habitats covered in this volume include all nonvegetated soft-bottom intertidal and subtidal areas of the bay between the Golden Gate and the mouths of the Sacramento and San Joaquin Rivers to the northeast, and to the southern extremity of the bay. The profile provides a reference to the scientific information concerning the animals and plants of the bay's benthic communities, their importance to the bay ecosystem, and their value as a resource measured in human terms. Because there have been few process-oriented studies of the benthos of San Francisco Bay (e.g., field and laboratory rate-measurement experiments), the material presented herein is largely descriptive. Nonetheless, we have described the processes that interconnect the various physical, chemical, and biological components of the benthic environment, and the important couplings between this environment and the water column above, with reference to research results from other estuaries where necessary. We consider the role of the benthic community as a food source for fish, aquatic birds, and humans; as a consumer or degrader of organic materials including wastes; as a recycler of minerals and nutrients; and as an accumulator of pollutants.

California↗

USGS1983

Results of an adaptive environmental assessment modeling workshop concerning potential impacts of drilling muds and cuttings on the marine environment

Drilling fluids or "muds" are essential components of modern drilling operations. They provide integrity for the well bore, a medium for removal of formation cuttings, and lubrication and cooling of the drill bit and pipe. The modeling workshop described in this report was conducted September 14-18, 1981 in Gulf Breeze, Florida to consider potential impacts of discharged drilling muds and cuttings on the marine environment. The broad goals of the workshop were synthesis of information on fate and effects, identification of general relationships between drilling fluids and the marine environment, and identification of site-specific variables likely to determine impacts of drilling muds and cuttings in various marine sites. The workshop was structured around construction of a model simulating fate and effects of discharges from a single rig into open water areas of the Gulf of Mexico, and discussion of factors that might produce different fate and effects in enclosed areas such as bays and estuaries. The simulation model was composed of four connected submodels. A Discharge/Fate submodel dealt with the discharge characteristics of the rig and the subsequent fate of discharged material. Three effects submodels then calculated biological responses at distances away from the rig for the water column, soft bottom benthos (assuming the rig was located over a soft bottom environment), and hard bottom benthos (assuming the rig was located over a hard bottom environment). The model focused on direct linkages between the discharge and various organisms rather than on how the marine ecosystem itself is interconnected. Behavior of the simulation model indicated relatively localized effects of drilling muds and cuttings discharged from a single platform into open water areas. Water column fate and effects were dominated by rapid dilution. Effects from deposition of spent mud and cuttings were spatially limited with relatively rapid recovery, especially in soft bottom benthic communities which were conceptualized as being adapted to frequent storms. This behavior was generated by the set of assumptions about linkages and functional relationships used to construct the model. Areas of uncertainty included methods for extrapolating 96-hr LC50 so results to exposures of varying lengths and concentrations; recovery rates of benthic communities; responses to various depths and rates of burial; fate and effects of the plume in relationship to stratification layers; and long-term and sub-lethal effects of slightly elevated concentrations of discharged materials. Evaluation of the assumptions of the Soft Bottom Submodel suggest that the assumptions used may have been relatively liberal estimates of resiliency of these communities. Discussion of "closed" water bodies such as bays and estuaries indicated several reasons to expect different and more complex fate and effects behavior in these areas. These factors included different species and communities (such as aquatic macrophytes and oyster beds), more complex circulation and stratification patterns, and potentially more active resuspension processes. Much of the possible difference in behavior in these areas centers around the extent to which they are “closed” or in the relative residence times of water and sediments in these areas as they determine the long-term dispersion of discharged material. Despite the complexity and variability of these areas, a large body of knowledge (such as that concerning fate and physical effects of dredge spoil) that could be effectively employed in analysis of potential fate and physical effects in enclosed areas was identified.

Report↗

USGS2009

Estuarine Ecology of Juvenile Salmon in Western Alaska: a Review

In the late 1990s and early 2000s, large declines in numbers of chum salmon Oncorhynchus keta and Chinook salmon O. tshawytscha returning to the Arctic-YukonKuskokwim (AYK) region (Alaska, USA) illuminated the need for an improved understanding of the variables controlling salmon abundance at all life stages. In addressing questions about salmon abundance, large gaps in our knowledge of basic salmon life history and the critical early marine life stage were revealed. In this paper, results from studies conducted on the estuarine ecology of juvenile salmon in western Alaska are summarized and compared, emphasizing timing and distribution during outmigration, environmental conditions, age and growth, feeding, and energy content of salmon smolts. In western Alaska, water temperature dramatically changes with season, ranging from 0°C after ice melt in late spring/early summer to 19°C in July. Juvenile salmon were found in AYK estuaries from early May until August or September, but to date no information is available on their residence duration or survival probability. Chum salmon were the most abundant juvenile salmon reported, ranging in percent catch from <0.1% to 4.7% and most research effort has focused on this species. Abundances of Chinook salmon, sockeye salmon O. nerka, and pink salmon O. gorbuscha varied among estuaries, while coho salmon O. kisutch juveniles were consistently rare, never amounting to more than 0.8% of the catch. Dietary composition of juvenile salmon was highly variable and a shift was commonly reported from epibenthic and neustonic prey in lower salinity water to pelagic prey in higher salinity water. Gaps in the knowledge of AYK salmon estuarine ecology are still evident. For example, data on outmigration patterns and residence timing and duration, rearing conditions and their effect on diet, growth, and survival are often completely lacking or available only for few selected years and sites. Filling gaps in knowledge concerning salmon use and survival in estuarine and near-shore habitats within the AYK region will aid in assessing the relative roles of all habitats (freshwater to marine) in controlling salmon abundance.

Alaska↗

USGS2015

Estuarine water quality in parks of the Northeast Coastal and Barrier Network: vital signs estuarine nutrient-enrichment monitoring, 2006-11

This report summarizes results of water-quality monitoring within estuaries of the National Park Service Northeast Coastal and Barrier Network (NCBN) from 2006 through 2011. Data collection formed part of the NCBN Vital Signs Monitoring Program implemented to detect threats of estuarine nutrient enrichment. Data included here were collected from six parks at predetermined intervals: Cape Cod National Seashore, Massachusetts (2007, 2008, 2009, 2010, 2011); Fire Island National Seashore, New York (2009, 2011); Gateway National Recreation Area, New York and New Jersey (2010); Assateague Island National Seashore, Maryland and Virginia (2006, 2008, 2010); George Washington Birthplace National Monument, Virginia (2009, 2011); and Colonial National Historic Park, Virginia (2008, 2010). Monitoring variables consisted of dissolved-oxygen concentration, chlorophyll a concentration, attenuation of downwelling photosynthetically available radiation (PAR), turbidity, water temperature, and salinity. All monitoring was conducted during four-week summer index periods. The monitoring design incorporated data collection at multiple, complementary spatial and temporal scales. Within each park, a spatial survey was conducted once during the index period following a probability design using a grid of tessellated hexagons as the basis for sample site selection. The spatial survey was supplemented with weekly measurements at a subset of sites and continuous monitoring at a single reference site. Within parks, data were reported as area-weighted water-quality conditions during each index period, the location and extent of estuarine area within condition categories, and spatial and temporal trends. In addition, we used a repeated measures analysis of variance to determine the extent to which variability in three water quality metrics (chlorophyll a in surface water, dissolved oxygen in bottom water, and water clarity expressed by PAR attenuation) was explained by year to year changes in each park's respective estuary.

Maryland, Massachusetts, New Jersey, New York, Vir↗

USGS2015

An updated conceptual model of Delta Smelt biology: Our evolving understanding of an estuarine fish

The main purpose of this report is to provide an up-to-date assessment and conceptual model of factors affecting Delta Smelt (Hypomesus transpacificus) throughout its primarily annual life cycle and to demonstrate how this conceptual model can be used for scientific and management purposes. The Delta Smelt is a small estuarine fish that only occurs in the San Francisco Estuary. Once abundant, it is now rare and has been protected under the federal and California Endangered Species Acts since 1993. The Delta Smelt listing was related to a step decline in the early 1980s; however, population abundance decreased even further with the onset of the “pelagic organism decline” (POD) around 2002. A substantial, albeit short-lived, increase in abundance of all life stages in 2011 showed that the Delta Smelt population can still rebound when conditions are favorable for spawning, growth, and survival. In this report, we update previous conceptual models for Delta Smelt to reflect new data and information since the release of the last synthesis report about the POD by the Interagency Ecological Program for the San Francisco Estuary (IEP) in 2010. Specific objectives include: 1. Provide decision makers with a practical tool for evaluating difficult trade-offs associated with management and policy decisions. 2. Provide scientists with a framework from which they can formulate and evaluate hypotheses using qualitative or quantitative models. 3. Provide the general public with a new way of learning about Delta Smelt and their habitat. Our updated conceptual model describes the habitat conditions and ecosystem drivers affecting each Delta Smelt life stage, across seasons and how the seasonal effects contribute to the annual success of the species. The conceptual model consists of two nested and linked levels of increasing specificity. The general life cycle conceptual model for four Delta Smelt life stages (adults, eggs and larvae, juveniles, and subadults) includes stationary ecosystem components and dynamic environmental drivers, habitat attributes, and Delta Smelt responses. The more detailed life stage transition conceptual models for each of the four Delta Smelt life stages describe relationships between environmental drivers, key habitat attributes, and the responses of Delta Smelt to habitat attributes as they transition from one life stage to the next. Our analyses and conceptual model show that good larval recruitment is essential for setting the stage for a strong year class; however, increased growth and survival through subsequent life stages are also needed to achieve and sustain higher population abundance. We used our conceptual model to generate 16 hypotheses about the factors that may have contributed to the 2011 increase in Delta Smelt relative abundance. We then evaluated these hypotheses by comparing habitat conditions and Delta Smelt responses in the wet year 2011 to those in the prior wet year 2006 and in the drier years 2005 and 2010. Larval recruitment was similarly high in both wet years and lower in the drier antecedent years, but juvenile and adult abundance increased only in 2011. In 2005 and 2006, the population was limited by very poor survival from the larval to the juvenile life stage. We found that in 2011, Delta Smelt may have benefitted from a combination of favorable habitat conditions throughout the year, including: 1. Adults and larvae benefitted from prolonged cool spring water temperatures, high 2011 winter and spring outflows which reduced entrainment risk and possibly improved other habitat conditions, and possibly enhanced food availability in late spring. 2. Juveniles benefitted from cool water temperatures in late spring and early summer as well as from improved food availability and low levels of harmful Microcystis. 3. Subadults also benefitted from improved food availability and from favorable habitat conditions in the large, low salinity zone (salinity 1-6) located more toward Suisun Bay,

California↗

USGS2014

Structure and vulnerability of Pacific Northwest tidal wetlands – A summary of wetland climate change research by the Western Ecology Division, U.S. EPA

Climate change poses a serious threat to the tidal wetlands of the Pacific Northwest (PNW) region of the U.S. In response to this threat, scientists at the Western Ecology Division of the U.S. EPA at and the Western Fisheries Research Center of the U.S. Geological Survey, along with other partners, initiated a series of studies on the structure and vulnerability of tidal wetlands to climate change. One research thrust was to evaluate community structure of PNW marshes, experimentally assess the vulnerability of marsh plants to inundation and salinity stress (as would happen with sea level rise), and evaluate the utility of the National Wetland Inventory (NWI) classification system. Another research thrust was to develop tools that provide insights into possible impacts of climate change. This effort included enhancing the Sea Level Affecting Marshes Model (SLAMM) to predict the effects of sea level rise on submerged aquatic vegetation (Zostera marina) distributions, evaluating changes in river flow into coastal estuaries in response to precipitation changes, and synthesizing Pacific Coast estuary, watershed, and climate data in a downloadable tool. Because the research resulting from these efforts was published in multiple venues, we summarized them in this document. We anticipate that future research efforts by the U.S. EPA will continue with a focus on climate change impacts on a regional scale.

California, Oregon, Washington↗

USGS2011

Diet of juvenile and adult American shad in the Columbia River

The diet of juvenile and adult American shad Alosa sapidissima captured from various locations in the Columbia River was investigated during 2007 and 2008. Collection efforts in 2007 were restricted to fish collected from existing adult and juvenile fish collection facilities located at Bonneville Dam and to adult shad captured by angling downstream from Bonneville Dam. In 2008, we used gillnets, electrofishing, beach seining, or cast nets to collect juvenile and adult shad from the saline estuary near Astoria (approximately river km 24) to just upstream from McNary Dam (approximately river km 472). We examined the stomach contents of 436 American shad captured in 2007 and 1,272 captured in 2008. Fish caught within the river were much more likely to contain food items than fish removed from fish collection facilities. The diet of age-0 American shad varied spatially and temporally, but was comprised primarily of crustaceans and insects. Prey diversity of age-0 American shad, as assessed by the Shannon Diversity Index, increased with decreasing distance to the estuary. Pre- and partial-spawn American shad primarily consumed Corophium spp. throughout the Columbia River; however, post-spawn adults primarily consumed gastropods upstream of McNary Dam

Oregon↗

USGS2006

Projecting future sea level

California’s coastal observations and global model projections indicate that California’s open coast and estuaries will experience increasing sea levels over the next century. Sea level rise has affected much of the coast of California, including the Southern California coast, the Central California open coast, and the San Francisco Bay and upper estuary. These trends, quantified from a small set of California tide gages, have ranged from 10–20 centimeters (cm) (3.9–7.9 inches) per century, quite similar to that estimated for global mean sea level. So far, there is little evidence that the rate of rise has accelerated, and the rate of rise at California tide gages has actually flattened since 1980, but projections suggest substantial sea level rise may occur over the next century. Climate change simulations project a substantial rate of global sea level rise over the next century due to thermal expansion as the oceans warm and runoff from melting land-based snow and ice accelerates. Sea level rise projected from the models increases with the amount of warming. Relative to sea levels in 2000, by the 2070–2099 period, sea level rise projections range from 11–54 cm (4.3–21 in) for simulations following the lower (B1) greenhouse gas (GHG) emissions scenario, from 14–61 cm (5.5–24 in) for the middle-upper (A2) emission scenario, and from 17–72 cm (6.7–28 in) for the highest (A1fi) scenario. In addition to relatively steady secular trends, sea levels along the California coast undergo shorter period variability above or below predicted tide levels and changes associated with long-term trends. These variations are caused by weather events and by seasonal to decadal climate fluctuations over the Pacific Ocean that in turn affect the Pacific coast. Highest coastal sea levels have occurred when winter storms and Pacific climate disturbances, such as El Niño, have coincided with high astronomical tides. This study considers a range of projected future global sea level rises in examining possible impacts at California coastal and estuarine stations. Two climate models and three scenarios considered in this scenarios study provide a set of possible future weather and short-period climate fluctuations, and a range of potential long-term sea level rise values. A range of mean sea level rise was considered in combination with weather and El Niño fluctuations extracted from two global climate models and two GHG emissions scenarios. The mean sea level rise values, determined from a survey of several climate models, range from approximately 10–80 cm (3.9–31 in) between 2000 and 2100. The middle to higher end of this range would substantially exceed the historical rate of sea level rise of 15–20 cm (5.9–7.9 in)per century observed at San Francisco and San Diego during the last 100 years. Gradual sea level rise progressively worsens the impacts of high tides and the surge and waves associated with storms. The potential for impacts of future sea level rise was assessed from the occurrence of hourly sea level extremes. The occurrence of extreme events follows a sharply escalating pattern as the magnitude of future sea level rise increases. The confluence of Low barometric pressures from storms and the presence large waves at the same time substantially increases the likelihood of high, damaging sea levels along the California coast. Similarly, astronomical tides and disturbances in sea level that are caused by weather and climate fluctuations are x transmitted into the San Francisco Bay and Delta, and on into the lower reaches of the Sacramento River. In addition to elevating Bay and Delta sea levels directly through inverse barometer and wind effects, storms may generate heavy precipitation and high fresh water runoff and cause floods in the Sacramento/San Joaquin Delta, increasing the potential for inundation of levees and other structures. There may also be increased risk of levee failure due to the hydraulics and geometry of these structures. Rising sea levels from climate change will increase the frequency and duration of extreme high water levels, causing historical coastal and San Francisco Bay/Delta structure design criteria to be exceeded.

California↗

USGS2003

Comparison of salinity and temperature at continuous monitoring stations and nearby monthly measurement sites in San Francisco Bay

Salinity and temperature are crucial state variables affecting estuarine habitat an d, thus, are measured by various San Francisco Estuary programs. This article presents a comparison of salinity and temperature data collected at seven continuo us monitoring stations throughout San Francisco Bay (Figure 1) with data collected monthly by the US Geological Survey (USGS) research vessel ( RV ) Polaris . The data comparison was done to determine if the continuous monitoring stations, which mostly are located near shore and always on structures in the water, are representative of water conditions in the main channel of the estuary where the RV Polaris collects measurements.

California↗

USGS1998

Results from the hydrodynamic element of the 1994 entrapment zone study in Suisun Bay

The entrapment zo as long been considered an important region of the San Francisco estuary. It has been the subject of several previous studies, and its location has been suggested as an index of condition of the estuarine ecosystem.A close correlate of this location, X2 1, is now used as a management objective on the basis that X2 is correlated with the abundance or survival of several estuarine-dependent species. X2 is a crude tool to use for this purpose, but it can be refined only through improved understanding of the various mechanisms underlying these correlations. These mechanisms probably differ among species, but for species resident in and near the entrapment zone, the correlation with X2 may be due to variations in intenSity oftrapping mechanisms with pOSition of the entrapment zone. Therefore, it is worthwhile to investigate these trapping mechanisms, the nature of the entrapment zone as habitat, and the responses of the entrapment zone to changes in X2 or outflow from the Sacramento-San Joaquin Delta. Studies ofthe entrapment zone ofthe San Francisco estuary have been conducted in springs of 1994, 1995, and 1996. These studies have been funded by the Interagency Ecological Program and conducted by scientists from IEP member agencies, the Romberg Tiburon Center for Environmental Studies, Bodega Marine Laboratory, and the University of California at Santa Cruz. This report presents results from 1994, a low-flow year. Subsequent reports will describe results from 1995 and 1996 and highlight differences among years. This report is organized in chapters that comprise more-or-Iess independent papers, with an introductory chapter for the entire study. This Executive Summary presents highlights of the overall study plan and summarizes the major findings.

California↗

USGS2001

Simplified conversions between specific conductance and salinity units for use with data from monitoring stations

The U.S. Geological Survey, Bureau of Reclamation, and the California Department of Water Resources maintain a large number of monitoring stations that record specific conductance, often referred to as “electrical conductivity,” in San Francisco Bay Estuary and the Sacramento-San Joaquin Delta. Specific conductance units that have been normalized to a standard temperature are useful in fresh waters, but conversion to salinity units has some considerable advantages in brackish waters of the estuary and Delta. For example, salinity is linearly related to the mixing ratio of freshwater and seawater, which is not the case for specific conductance, even when values are normalized to a standard temperature. The Practical Salinity Scale 1978 is based on specific conductance, temperature, and pressure measurements of seawater and freshwater mixtures (Lewis 1980 and references therein). Equations and data that define the scale make possible conversions between specific conductance and salinity values. This article presents a simplified conversion to salinity units for use with specific conductance data from monitoring stations that have been normalized to a standard temperature of 25 °C and an equation for the reverse calculation. Although these previously undocumented methods have been shared with many IEP agencies over the last two decades, the sources of the equations and data are identified here so that the original literature can be accessed.

Interagency Ecological Program Newsletter↗

USGS2000

Nutrient pollution of coastal rivers, bays, and seas

Over the past 40 years, antipollution laws have greatly reduced discharges of toxic substances into our coastal waters. This effort, however, has focused largely on point-source pollution of industrial and municipal effluent. No comparable effort has been made to restrict the input of nitrogen (N) from municipal effluent, nor to control the flows of N and phosphorus (P) that enter waterways from dispersed or nonpoint sources such as agricultural and urban runoff or as airborne pollutants. As a result, inputs of nonpoint pollutants, particularly N, have increased dramatically. Nonpoint pollution from N and P now represents the largest pollution problem facing the vital coastal waters of the United States. Nutrient pollution is the common thread that links an array of problems along the nations coastline, including eutrophication, harmful algal blooms, dead zones, fish kills, some shellfish poisonings, loss of seagrass and kelp beds, some coral reef destruction, and even some marine mammal and seabird deaths. More than 60 percent of our coastal rivers and bays in every coastal state of the continental United States are moderately to severely degraded by nutrient pollution. This degradation is particularly severe in the mid Atlantic states, in the southeast, and in the Gulf of Mexico. A recent report from the National Research Council entitled Clean Coastal Waters: Understanding and Reduc- ing the Effects of Nutrient Pollution concludes that: Nutrient over-enrichment of coastal ecosystems generally triggers ecological changes that decrease the biologi- cal diversity of bays and estuaries. While moderate N enrichment of some coastal waters may increase fish production, over-enrichment generally degrades the marine food web that supports commercially valuable fish. The marked increase in nutrient pollution of coastal waters has been accompanied by an increase in harmful algal blooms, and in at least some cases, pollution has triggered these blooms. High nutrient levels and the changes they cause in water quality and the makeup of the algal community are detrimental to the health of coral reefs and the diversity of animal life supported by seagrass and kelp communi- ties. Research during the past decade confirms that N is the chief culprit in eutrophication and other impacts of nutrient over-enrichment in temperate coastal waters, while P is most problematic in eutrophication of freshwa- ter lakes. Human conversion of atmospheric N into biologically useable forms, principally synthetic inorganic fertilizers, now matches the natural rate of biological N fixation from all the land surfaces of the earth. Both agriculture and the burning of fossil fuels contribute significantly to nonpoint flows of N to coastal waters, either as direct runoff or airborne pollutants. N from animal wastes that leaks directly to surface waters or is volatilized to the atmosphere as ammonia may be the largest single source of N that moves from agricultural operations into coastal waters. The National Research Council report recommended that, as a minimum goal, the nation should work to reverse nutrient should be taken to assure that the 40 percent of coastal areas now ranked as healthy do not develop symptoms of nutrient pollution in 10 percent of its degraded coastal systems by 2010 and 25 percent of them by 2020. Also, action should be taken to assure that the 40 percent of coastal areas now ranked as healthy do not develop symptoms of nutrient pollution. Meeting these goals will require an array of strategies and approaches tailored to specific regions and coastal ecosystems. There is an urgent need for development and testing of techniques that can reliably pinpoint the sources of N pollutants to an estuary. For some coastal systems, N removal during treatment of human sewage may be sufficient to reverse nutrient pollution. For most coastal systems, however, the solutions will be more complex and may involve controls on N compounds emitted during fossil fuel combustion as well as incentives to reduce over-fertilization of agricul- tural fields and nutrient pollution from animal wastes in livestock feedlot operations.

Alabama, California, Connecticut, Delaware, Florid↗

USGS1996

Seasonal fluctuations of water quality in San Francisco Bay during the first three years of the regional monitoring program, 1993-1995

The 1995 Regional Monitoring Program (RMP) Annual Report includes monitoring results from the Base Program, Pilot and Special Studies, and summary and perspective articles contributed by RMP investigators and other scientists. The purpose of the RMP is to provide information on the status and trends of contamination in San Francisco Estuary water, sediment, and bivalve tissue, and to assess the potential for biological effects from exposure to those contaminants. The objectives, background, and rationale for the RMP are described in the Introduction (Chapter 1). The 1995 RMP Base Program was essentially the same as in 1994. Water monitoring was conducted in February, April, and August at 24 stations throughout the Estuary. Aquatic bioassays were conducted in February and August at 13 of those stations. Sediment monitoring was conducted in February and August at all 24 stations, and sediment bioassays were conducted at 12 of those stations. Bioaccumulation of contaminants by transplanted bivalves was monitored at 15 stations during two 90 day sampling periods: January to April and July to September. Pilot Studies on benthic fauna and tidal wetlands were conducted and Special Studies on trends in trace elements and development of sediment indicators were also included.

California↗

USGS2000

Exposure of delta smelt to dissolved pesticides in 1998 and 1999

Delta smelt is a threatened species in the San Francisco Bay Estuary. Pesticide toxicity is a possible cause for the need to list this fish (Bennett and Moyle 1996; Moyle and others 1996). Numerous pesticides are transported into the estuary from area rivers (MacCoy and others 1995). However, there are minimal data to document the presence, or absence, of pesticides within delta smelt habitat, especially during their vulnerable early life stages. This study, conducted by the U.S. Geological Survey (USGS), documents the occurrence of pesticides within delta smelt habitat; specifically, the length and variability of their potential exposure to multiple dissolved pesticides. This article reviews delta smelt habitat and early life stages followed by an explanation of the study design for assessing pesticide exposure. Results show the co-occurrence of multiple pesticides and delta smelt in their native habitat; these results are presented within the context of possible toxic effects to delta smelt. Finally, the annual variability of pesticide distributions is discussed.

Interagency Ecological Program Newsletter↗

USGS2009

Pilot study to access the role of Ceratomyxa shasta infection in mortality of fall-run Chinook smolts migrating through the lower Klamath River in 2008

Apparent survival and migration rate of radio-tagged hatchery subyearling Chinook salmon released at Iron Gate Hatchery was monitored in the Klamath River to see if the timing of mortality coincided with observations of ceratomyxosis in re-captured coded wire tag cohorts. Despite rapid emigration, these relatively large (mean fork length 92 mm) smolts had a cumulative apparent survival to the estuary of 0.074 (SE 0.024) and standardized rates of survival per 100 km tended to decrease linearly with distance from the hatchery. The last fish detection occurred 26 days after release but median travel time between Iron Gate Hatchery (rkm 309) and the last receiver near the Klamath estuary (Blake’s Riffle rkm 13) was about 10 days. The majority of apparent mortality (8-10 d post-release) occurred before disease from Ceratomyxa shasta infection is expected after exposure to infectious waters. Despite numerous observations of ceratomyxosis in the Klamath R. during June, an obvious link between disease and apparent survival was not present in this study. Future studies should examine the acute (e.g., predator types and densities) and chronic (e.g., swimming performance impairment due to disease) mortality factors for juvenile Chinook salmon smolts in the Klamath River.

California↗